spark-instrumented-optimizer/docs
Joseph K. Bradley 657a88835d [SPARK-4580] [SPARK-4610] [mllib] [docs] Documentation for tree ensembles + DecisionTree API fix
Major changes:
* Added programming guide sections for tree ensembles
* Added examples for tree ensembles
* Updated DecisionTree programming guide with more info on parameters
* **API change**: Standardized the tree parameter for the number of classes (for classification)

Minor changes:
* Updated decision tree documentation
* Updated existing tree and tree ensemble examples
 * Use train/test split, and compute test error instead of training error.
 * Fixed decision_tree_runner.py to actually use the number of classes it computes from data. (small bug fix)

Note: I know this is a lot of lines, but most is covered by:
* Programming guide sections for gradient boosting and random forests.  (The changes are probably best viewed by generating the docs locally.)
* New examples (which were copied from the programming guide)
* The "numClasses" renaming

I have run all examples and relevant unit tests.

CC: mengxr manishamde codedeft

Author: Joseph K. Bradley <joseph@databricks.com>
Author: Joseph K. Bradley <joseph.kurata.bradley@gmail.com>

Closes #3461 from jkbradley/ensemble-docs and squashes the following commits:

70a75f3 [Joseph K. Bradley] updated forest vs boosting comparison
d1de753 [Joseph K. Bradley] Added note about toString and toDebugString for DecisionTree to migration guide
8e87f8f [Joseph K. Bradley] Combined GBT and RandomForest guides into one ensembles guide
6fab846 [Joseph K. Bradley] small fixes based on review
b9f8576 [Joseph K. Bradley] updated decision tree doc
375204c [Joseph K. Bradley] fixed python style
2b60b6e [Joseph K. Bradley] merged Java RandomForest examples into 1 file.  added header.  Fixed small bug in same example in the programming guide.
706d332 [Joseph K. Bradley] updated python DT runner to print full model if it is small
c76c823 [Joseph K. Bradley] added migration guide for mllib
abe5ed7 [Joseph K. Bradley] added examples for random forest in Java and Python to examples folder
07fc11d [Joseph K. Bradley] Renamed numClassesForClassification to numClasses everywhere in trees and ensembles. This is a breaking API change, but it was necessary to correct an API inconsistency in Spark 1.1 (where Python DecisionTree used numClasses but Scala used numClassesForClassification).
cdfdfbc [Joseph K. Bradley] added examples for GBT
6372a2b [Joseph K. Bradley] updated decision tree examples to use random split.  tested all of them.
ad3e695 [Joseph K. Bradley] added gbt and random forest to programming guide.  still need to update their examples
2014-12-04 09:57:50 +08:00
..
_layouts Add a Community Projects page 2014-09-16 13:46:06 -07:00
_plugins [SPARK-3412] [PySpark] Replace Epydoc with Sphinx to generate Python API docs 2014-10-07 18:09:27 -07:00
css [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
img [Doc][GraphX] Remove unused png files. 2014-11-21 00:30:58 -08:00
js [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
_config.yml Bumping version to 1.3.0-SNAPSHOT. 2014-11-18 21:24:18 -08:00
api.md [SPARK-1439, SPARK-1440] Generate unified Scaladoc across projects and Javadocs 2014-04-21 21:57:40 -07:00
bagel-programming-guide.md SPARK-2363. Clean MLlib's sample data files 2014-07-13 19:27:43 -07:00
building-spark.md [DOCS][BUILD] Add instruction to use change-version-to-2.11.sh in 'Building for Scala 2.11'. 2014-11-30 00:10:31 -05:00
cluster-overview.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
configuration.md [SPARK-4686] Link to allowed master URLs is broken 2014-12-02 09:06:02 -08:00
contributing-to-spark.md Work in progress: 2013-09-08 00:29:11 -07:00
ec2-scripts.md [Spark-4509] Revert EC2 tag-based cluster membership patch 2014-11-25 16:07:09 -08:00
graphx-programming-guide.md [Doc][GraphX] Remove Motivation section and did some minor update. 2014-11-21 00:29:02 -08:00
hadoop-third-party-distributions.md SPARK-3069 [DOCS] Build instructions in README are outdated 2014-09-16 09:18:03 -07:00
hardware-provisioning.md Change port from 3030 to 4040 2013-09-11 10:01:38 -07:00
index.md SPARK-971 [DOCS] Link to Confluence wiki from project website / documentation 2014-11-09 17:40:48 -08:00
java-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
job-scheduling.md SPARK-1183. Don't use "worker" to mean executor 2014-03-13 12:11:33 -07:00
mllib-classification-regression.md SPARK-2830 [MLlib]: re-organize mllib documentation 2014-08-12 17:15:21 -07:00
mllib-clustering.md Streaming KMeans [MLLIB][SPARK-3254] 2014-10-31 22:30:12 -07:00
mllib-collaborative-filtering.md SPARK-1307 [DOCS] Don't use term 'standalone' to refer to a Spark Application 2014-10-14 21:37:51 -07:00
mllib-data-types.md [SPARK-2830][MLLIB] doc update for 1.1 2014-08-27 01:19:48 -07:00
mllib-decision-tree.md [SPARK-4580] [SPARK-4610] [mllib] [docs] Documentation for tree ensembles + DecisionTree API fix 2014-12-04 09:57:50 +08:00
mllib-dimensionality-reduction.md SPARK-1307 [DOCS] Don't use term 'standalone' to refer to a Spark Application 2014-10-14 21:37:51 -07:00
mllib-ensembles.md [SPARK-4580] [SPARK-4610] [mllib] [docs] Documentation for tree ensembles + DecisionTree API fix 2014-12-04 09:57:50 +08:00
mllib-feature-extraction.md [SPARK-3838][examples][mllib][python] Word2Vec example in python 2014-10-31 18:33:19 -07:00
mllib-guide.md [SPARK-4580] [SPARK-4610] [mllib] [docs] Documentation for tree ensembles + DecisionTree API fix 2014-12-04 09:57:50 +08:00
mllib-linear-methods.md [SPARK-4711] [mllib] [docs] Programming guide advice on choosing optimizer 2014-12-04 08:58:03 +08:00
mllib-naive-bayes.md fixed MLlib Naive-Bayes java example bug 2014-11-04 09:53:43 -08:00
mllib-optimization.md [SPARK-4711] [mllib] [docs] Programming guide advice on choosing optimizer 2014-12-04 08:58:03 +08:00
mllib-statistics.md [SPARK-3964] [MLlib] [PySpark] add Hypothesis test Python API 2014-11-04 21:35:52 -08:00
monitoring.md [SPARK-4546] Improve HistoryServer first time user experience 2014-11-25 15:48:02 -08:00
programming-guide.md Documentation: add description for repartitionAndSortWithinPartitions 2014-12-01 08:45:34 -08:00
python-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
quick-start.md SPARK-4170 [CORE] Closure problems when running Scala app that "extends App" 2014-11-27 09:03:17 -08:00
README.md add Sphinx as a dependency of building docs 2014-11-20 19:13:16 -08:00
running-on-mesos.md [SPARK-3240] Adding known issue for MESOS-1688 2014-08-26 18:30:45 -07:00
running-on-yarn.md [SPARK-4642] Add description about spark.yarn.queue to running-on-YARN document. 2014-12-03 13:16:24 -08:00
scala-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
security.md [SPARK-2938] Support SASL authentication in NettyBlockTransferService 2014-11-04 16:15:38 -08:00
spark-standalone.md Docs : use "--total-executor-cores" rather than "--cores" after spark-shell 2014-09-27 09:42:01 -07:00
sql-programming-guide.md [SQL][DOC] Date type in SQL programming guide 2014-12-01 14:04:07 -08:00
storage-openstack-swift.md [SPARK-938][doc] Add OpenStack Swift support 2014-09-07 20:56:04 -07:00
streaming-custom-receivers.md [DOCS] Fixed wrong links 2014-08-19 22:43:22 -07:00
streaming-flume-integration.md [SPARK-2419][Streaming][Docs] Updates to the streaming programming guide 2014-09-03 17:38:01 -07:00
streaming-kafka-integration.md [SPARK-2419][Streaming][Docs] Updates to the streaming programming guide 2014-09-03 17:38:01 -07:00
streaming-kinesis-integration.md SPARK-3069 [DOCS] Build instructions in README are outdated 2014-09-16 09:18:03 -07:00
streaming-programming-guide.md SPARK-4040. Update documentation to exemplify use of local (n) value, fo... 2014-11-05 15:45:34 -08:00
submitting-applications.md SPARK-2310. Support arbitrary Spark properties on the command line with ... 2014-07-23 23:11:26 -07:00
tuning.md SPARK-1813. Add a utility to SparkConf that makes using Kryo really easy 2014-10-21 21:53:09 -07:00

Welcome to the Spark documentation!

This readme will walk you through navigating and building the Spark documentation, which is included here with the Spark source code. You can also find documentation specific to release versions of Spark at http://spark.apache.org/documentation.html.

Read on to learn more about viewing documentation in plain text (i.e., markdown) or building the documentation yourself. Why build it yourself? So that you have the docs that corresponds to whichever version of Spark you currently have checked out of revision control.

Generating the Documentation HTML

We include the Spark documentation as part of the source (as opposed to using a hosted wiki, such as the github wiki, as the definitive documentation) to enable the documentation to evolve along with the source code and be captured by revision control (currently git). This way the code automatically includes the version of the documentation that is relevant regardless of which version or release you have checked out or downloaded.

In this directory you will find textfiles formatted using Markdown, with an ".md" suffix. You can read those text files directly if you want. Start with index.md.

The markdown code can be compiled to HTML using the Jekyll tool. Jekyll and a few dependencies must be installed for this to work. We recommend installing via the Ruby Gem dependency manager. Since the exact HTML output varies between versions of Jekyll and its dependencies, we list specific versions here in some cases:

$ sudo gem install jekyll
$ sudo gem install jekyll-redirect-from

Execute jekyll from the docs/ directory. Compiling the site with Jekyll will create a directory called _site containing index.html as well as the rest of the compiled files.

You can modify the default Jekyll build as follows:

# Skip generating API docs (which takes a while)
$ SKIP_API=1 jekyll build
# Serve content locally on port 4000
$ jekyll serve --watch
# Build the site with extra features used on the live page
$ PRODUCTION=1 jekyll build

Pygments

We also use pygments (http://pygments.org) for syntax highlighting in documentation markdown pages, so you will also need to install that (it requires Python) by running sudo pip install Pygments.

To mark a block of code in your markdown to be syntax highlighted by jekyll during the compile phase, use the following sytax:

{% highlight scala %}
// Your scala code goes here, you can replace scala with many other
// supported languages too.
{% endhighlight %}

Sphinx

We use Sphinx to generate Python API docs, so you will need to install it by running sudo pip install sphinx.

API Docs (Scaladoc and Sphinx)

You can build just the Spark scaladoc by running sbt/sbt doc from the SPARK_PROJECT_ROOT directory.

Similarly, you can build just the PySpark docs by running make html from the SPARK_PROJECT_ROOT/python/docs directory. Documentation is only generated for classes that are listed as public in __init__.py.

When you run jekyll in the docs directory, it will also copy over the scaladoc for the various Spark subprojects into the docs directory (and then also into the _site directory). We use a jekyll plugin to run sbt/sbt doc before building the site so if you haven't run it (recently) it may take some time as it generates all of the scaladoc. The jekyll plugin also generates the PySpark docs Sphinx.

NOTE: To skip the step of building and copying over the Scala and Python API docs, run SKIP_API=1 jekyll.