spark-instrumented-optimizer/make-distribution.sh
Sun Rui 835a79d78e [SPARK-10500][SPARKR] sparkr.zip cannot be created if /R/lib is unwritable
The basic idea is that:
The archive of the SparkR package itself, that is sparkr.zip, is created during build process and is contained in the Spark binary distribution. No change to it after the distribution is installed as the directory it resides ($SPARK_HOME/R/lib) may not be writable.

When there is R source code contained in jars or Spark packages specified with "--jars" or "--packages" command line option, a temporary directory is created by calling Utils.createTempDir() where the R packages built from the R source code will be installed. The temporary directory is writable, and won't interfere with each other when there are multiple SparkR sessions, and will be deleted when this SparkR session ends. The R binary packages installed in the temporary directory then are packed into an archive named rpkg.zip.

sparkr.zip and rpkg.zip are distributed to the cluster in YARN modes.

The distribution of rpkg.zip in Standalone modes is not supported in this PR, and will be address in another PR.

Various R files are updated to accept multiple lib paths (one is for SparkR package, the other is for other R packages)  so that these package can be accessed in R.

Author: Sun Rui <rui.sun@intel.com>

Closes #9390 from sun-rui/SPARK-10500.
2015-11-15 19:29:09 -08:00

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#!/usr/bin/env bash
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
#
# Script to create a binary distribution for easy deploys of Spark.
# The distribution directory defaults to dist/ but can be overridden below.
# The distribution contains fat (assembly) jars that include the Scala library,
# so it is completely self contained.
# It does not contain source or *.class files.
set -o pipefail
set -e
set -x
# Figure out where the Spark framework is installed
SPARK_HOME="$(cd "`dirname "$0"`"; pwd)"
DISTDIR="$SPARK_HOME/dist"
SPARK_TACHYON=false
TACHYON_VERSION="0.8.1"
TACHYON_TGZ="tachyon-${TACHYON_VERSION}-bin.tar.gz"
TACHYON_URL="http://tachyon-project.org/downloads/files/${TACHYON_VERSION}/${TACHYON_TGZ}"
MAKE_TGZ=false
NAME=none
MVN="$SPARK_HOME/build/mvn"
function exit_with_usage {
echo "make-distribution.sh - tool for making binary distributions of Spark"
echo ""
echo "usage:"
cl_options="[--name] [--tgz] [--mvn <mvn-command>] [--with-tachyon]"
echo "./make-distribution.sh $cl_options <maven build options>"
echo "See Spark's \"Building Spark\" doc for correct Maven options."
echo ""
exit 1
}
# Parse arguments
while (( "$#" )); do
case $1 in
--hadoop)
echo "Error: '--hadoop' is no longer supported:"
echo "Error: use Maven profiles and options -Dhadoop.version and -Dyarn.version instead."
echo "Error: Related profiles include hadoop-1, hadoop-2.2, hadoop-2.3 and hadoop-2.4."
exit_with_usage
;;
--with-yarn)
echo "Error: '--with-yarn' is no longer supported, use Maven option -Pyarn"
exit_with_usage
;;
--with-hive)
echo "Error: '--with-hive' is no longer supported, use Maven options -Phive and -Phive-thriftserver"
exit_with_usage
;;
--skip-java-test)
SKIP_JAVA_TEST=true
;;
--with-tachyon)
SPARK_TACHYON=true
;;
--tgz)
MAKE_TGZ=true
;;
--mvn)
MVN="$2"
shift
;;
--name)
NAME="$2"
shift
;;
--help)
exit_with_usage
;;
*)
break
;;
esac
shift
done
if [ -z "$JAVA_HOME" ]; then
# Fall back on JAVA_HOME from rpm, if found
if [ $(command -v rpm) ]; then
RPM_JAVA_HOME="$(rpm -E %java_home 2>/dev/null)"
if [ "$RPM_JAVA_HOME" != "%java_home" ]; then
JAVA_HOME="$RPM_JAVA_HOME"
echo "No JAVA_HOME set, proceeding with '$JAVA_HOME' learned from rpm"
fi
fi
fi
if [ -z "$JAVA_HOME" ]; then
echo "Error: JAVA_HOME is not set, cannot proceed."
exit -1
fi
if [ $(command -v git) ]; then
GITREV=$(git rev-parse --short HEAD 2>/dev/null || :)
if [ ! -z "$GITREV" ]; then
GITREVSTRING=" (git revision $GITREV)"
fi
unset GITREV
fi
if [ ! "$(command -v "$MVN")" ] ; then
echo -e "Could not locate Maven command: '$MVN'."
echo -e "Specify the Maven command with the --mvn flag"
exit -1;
fi
VERSION=$("$MVN" help:evaluate -Dexpression=project.version $@ 2>/dev/null | grep -v "INFO" | tail -n 1)
SCALA_VERSION=$("$MVN" help:evaluate -Dexpression=scala.binary.version $@ 2>/dev/null\
| grep -v "INFO"\
| tail -n 1)
SPARK_HADOOP_VERSION=$("$MVN" help:evaluate -Dexpression=hadoop.version $@ 2>/dev/null\
| grep -v "INFO"\
| tail -n 1)
SPARK_HIVE=$("$MVN" help:evaluate -Dexpression=project.activeProfiles -pl sql/hive $@ 2>/dev/null\
| grep -v "INFO"\
| fgrep --count "<id>hive</id>";\
# Reset exit status to 0, otherwise the script stops here if the last grep finds nothing\
# because we use "set -o pipefail"
echo -n)
if [ "$NAME" == "none" ]; then
NAME=$SPARK_HADOOP_VERSION
fi
echo "Spark version is $VERSION"
if [ "$MAKE_TGZ" == "true" ]; then
echo "Making spark-$VERSION-bin-$NAME.tgz"
else
echo "Making distribution for Spark $VERSION in $DISTDIR..."
fi
if [ "$SPARK_TACHYON" == "true" ]; then
echo "Tachyon Enabled"
else
echo "Tachyon Disabled"
fi
# Build uber fat JAR
cd "$SPARK_HOME"
export MAVEN_OPTS="-Xmx2g -XX:MaxPermSize=512M -XX:ReservedCodeCacheSize=512m"
# Store the command as an array because $MVN variable might have spaces in it.
# Normal quoting tricks don't work.
# See: http://mywiki.wooledge.org/BashFAQ/050
BUILD_COMMAND=("$MVN" clean package -DskipTests $@)
# Actually build the jar
echo -e "\nBuilding with..."
echo -e "\$ ${BUILD_COMMAND[@]}\n"
"${BUILD_COMMAND[@]}"
# Make directories
rm -rf "$DISTDIR"
mkdir -p "$DISTDIR/lib"
echo "Spark $VERSION$GITREVSTRING built for Hadoop $SPARK_HADOOP_VERSION" > "$DISTDIR/RELEASE"
echo "Build flags: $@" >> "$DISTDIR/RELEASE"
# Copy jars
cp "$SPARK_HOME"/assembly/target/scala*/*assembly*hadoop*.jar "$DISTDIR/lib/"
cp "$SPARK_HOME"/examples/target/scala*/spark-examples*.jar "$DISTDIR/lib/"
# This will fail if the -Pyarn profile is not provided
# In this case, silence the error and ignore the return code of this command
cp "$SPARK_HOME"/network/yarn/target/scala*/spark-*-yarn-shuffle.jar "$DISTDIR/lib/" &> /dev/null || :
# Copy example sources (needed for python and SQL)
mkdir -p "$DISTDIR/examples/src/main"
cp -r "$SPARK_HOME"/examples/src/main "$DISTDIR/examples/src/"
if [ "$SPARK_HIVE" == "1" ]; then
cp "$SPARK_HOME"/lib_managed/jars/datanucleus*.jar "$DISTDIR/lib/"
fi
# Copy license and ASF files
cp "$SPARK_HOME/LICENSE" "$DISTDIR"
cp -r "$SPARK_HOME/licenses" "$DISTDIR"
cp "$SPARK_HOME/NOTICE" "$DISTDIR"
if [ -e "$SPARK_HOME"/CHANGES.txt ]; then
cp "$SPARK_HOME/CHANGES.txt" "$DISTDIR"
fi
# Copy data files
cp -r "$SPARK_HOME/data" "$DISTDIR"
# Copy other things
mkdir "$DISTDIR"/conf
cp "$SPARK_HOME"/conf/*.template "$DISTDIR"/conf
cp "$SPARK_HOME/README.md" "$DISTDIR"
cp -r "$SPARK_HOME/bin" "$DISTDIR"
cp -r "$SPARK_HOME/python" "$DISTDIR"
cp -r "$SPARK_HOME/sbin" "$DISTDIR"
cp -r "$SPARK_HOME/ec2" "$DISTDIR"
# Copy SparkR if it exists
if [ -d "$SPARK_HOME"/R/lib/SparkR ]; then
mkdir -p "$DISTDIR"/R/lib
cp -r "$SPARK_HOME/R/lib/SparkR" "$DISTDIR"/R/lib
cp "$SPARK_HOME/R/lib/sparkr.zip" "$DISTDIR"/R/lib
fi
# Download and copy in tachyon, if requested
if [ "$SPARK_TACHYON" == "true" ]; then
TMPD=`mktemp -d 2>/dev/null || mktemp -d -t 'disttmp'`
pushd "$TMPD" > /dev/null
echo "Fetching tachyon tgz"
TACHYON_DL="${TACHYON_TGZ}.part"
if [ $(command -v curl) ]; then
curl --silent -k -L "${TACHYON_URL}" > "${TACHYON_DL}" && mv "${TACHYON_DL}" "${TACHYON_TGZ}"
elif [ $(command -v wget) ]; then
wget --quiet "${TACHYON_URL}" -O "${TACHYON_DL}" && mv "${TACHYON_DL}" "${TACHYON_TGZ}"
else
printf "You do not have curl or wget installed. please install Tachyon manually.\n"
exit -1
fi
tar xzf "${TACHYON_TGZ}"
cp "tachyon-${TACHYON_VERSION}/assembly/target/tachyon-assemblies-${TACHYON_VERSION}-jar-with-dependencies.jar" "$DISTDIR/lib"
mkdir -p "$DISTDIR/tachyon/src/main/java/tachyon/web"
cp -r "tachyon-${TACHYON_VERSION}"/{bin,conf,libexec} "$DISTDIR/tachyon"
cp -r "tachyon-${TACHYON_VERSION}"/servers/src/main/java/tachyon/web "$DISTDIR/tachyon/src/main/java/tachyon/web"
if [[ `uname -a` == Darwin* ]]; then
# need to run sed differently on osx
nl=$'\n'; sed -i "" -e "s|export TACHYON_JAR=\$TACHYON_HOME/target/\(.*\)|# This is set for spark's make-distribution\\$nl export TACHYON_JAR=\$TACHYON_HOME/../lib/\1|" "$DISTDIR/tachyon/libexec/tachyon-config.sh"
else
sed -i "s|export TACHYON_JAR=\$TACHYON_HOME/target/\(.*\)|# This is set for spark's make-distribution\n export TACHYON_JAR=\$TACHYON_HOME/../lib/\1|" "$DISTDIR/tachyon/libexec/tachyon-config.sh"
fi
popd > /dev/null
rm -rf "$TMPD"
fi
if [ "$MAKE_TGZ" == "true" ]; then
TARDIR_NAME=spark-$VERSION-bin-$NAME
TARDIR="$SPARK_HOME/$TARDIR_NAME"
rm -rf "$TARDIR"
cp -r "$DISTDIR" "$TARDIR"
tar czf "spark-$VERSION-bin-$NAME.tgz" -C "$SPARK_HOME" "$TARDIR_NAME"
rm -rf "$TARDIR"
fi