spark-instrumented-optimizer/python
Liang-Chi Hsieh 3e6a714c9e [SPARK-21766][PYSPARK][SQL] DataFrame toPandas() raises ValueError with nullable int columns
## What changes were proposed in this pull request?

When calling `DataFrame.toPandas()` (without Arrow enabled), if there is a `IntegralType` column (`IntegerType`, `ShortType`, `ByteType`) that has null values the following exception is thrown:

    ValueError: Cannot convert non-finite values (NA or inf) to integer

This is because the null values first get converted to float NaN during the construction of the Pandas DataFrame in `from_records`, and then it is attempted to be converted back to to an integer where it fails.

The fix is going to check if the Pandas DataFrame can cause such failure when converting, if so, we don't do the conversion and use the inferred type by Pandas.

Closes #18945

## How was this patch tested?

Added pyspark test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #19319 from viirya/SPARK-21766.
2017-09-22 22:39:47 +09:00
..
docs [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
lib [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
pyspark [SPARK-21766][PYSPARK][SQL] DataFrame toPandas() raises ValueError with nullable int columns 2017-09-22 22:39:47 +09:00
test_support [SPARK-19610][SQL] Support parsing multiline CSV files 2017-02-28 13:34:33 -08:00
.gitignore [SPARK-3946] gitignore in /python includes wrong directory 2014-10-14 14:09:39 -07:00
MANIFEST.in [SPARK-18652][PYTHON] Include the example data and third-party licenses in pyspark package. 2016-12-07 06:09:27 +08:00
pylintrc [SPARK-13596][BUILD] Move misc top-level build files into appropriate subdirs 2016-03-07 14:48:02 -08:00
README.md [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
run-tests [SPARK-8583] [SPARK-5482] [BUILD] Refactor python/run-tests to integrate with dev/run-tests module system 2015-06-27 20:24:34 -07:00
run-tests.py [SPARK-14280][BUILD][WIP] Update change-version.sh and pom.xml to add Scala 2.12 profiles and enable 2.12 compilation 2017-09-01 19:21:21 +01:00
setup.cfg [SPARK-1267][SPARK-18129] Allow PySpark to be pip installed 2016-11-16 14:22:15 -08:00
setup.py Fixed pandoc dependency issue in python/setup.py 2017-09-07 09:38:00 +09:00

Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page

Python Packaging

This README file only contains basic information related to pip installed PySpark. This packaging is currently experimental and may change in future versions (although we will do our best to keep compatibility). Using PySpark requires the Spark JARs, and if you are building this from source please see the builder instructions at "Building Spark".

The Python packaging for Spark is not intended to replace all of the other use cases. This Python packaged version of Spark is suitable for interacting with an existing cluster (be it Spark standalone, YARN, or Mesos) - but does not contain the tools required to setup your own standalone Spark cluster. You can download the full version of Spark from the Apache Spark downloads page.

NOTE: If you are using this with a Spark standalone cluster you must ensure that the version (including minor version) matches or you may experience odd errors.

Python Requirements

At its core PySpark depends on Py4J (currently version 0.10.6), but additional sub-packages have their own requirements (including numpy and pandas).