spark-instrumented-optimizer/docs
Sam Halliday 56aff4bd6c SPARK-5665 [DOCS] Update netlib-java documentation
I am the author of netlib-java and I found this documentation to be out of date. Some main points:

1. Breeze has not depended on jBLAS for some time
2. netlib-java provides a pure JVM implementation as the fallback (the original docs did not appear to be aware of this, claiming that gfortran was necessary)
3. The licensing issue is not just about LGPL: optimised natives have proprietary licenses. Building with the LGPL flag turned on really doesn't help you get past this.
4. I really think it's best to direct people to my detailed setup guide instead of trying to compress it into one sentence. It is different for each architecture, each OS, and for each backend.

I hope this helps to clear things up 😄

Author: Sam Halliday <sam.halliday@Gmail.com>
Author: Sam Halliday <sam.halliday@gmail.com>

Closes #4448 from fommil/patch-1 and squashes the following commits:

18cda11 [Sam Halliday] remove link to skillsmatters at request of @mengxr
a35e4a9 [Sam Halliday] reword netlib-java/breeze docs
2015-02-08 16:34:26 -08:00
..
_layouts [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
_plugins [SPARK-4501][Core] - Create build/mvn to automatically download maven/zinc/scalac 2014-12-27 13:26:38 -08:00
css [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
img [SPARK-4259][MLlib]: Add Power Iteration Clustering Algorithm with Gaussian Similarity Function 2015-01-30 14:09:49 -08:00
js [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
_config.yml [DOC] Fixed Mesos version in doc from 0.18.1 to 0.21.0 2015-01-09 14:40:45 -08:00
api.md [SPARK-1439, SPARK-1440] Generate unified Scaladoc across projects and Javadocs 2014-04-21 21:57:40 -07:00
bagel-programming-guide.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
building-spark.md [Doc] Minor: Fixes several formatting issues 2015-02-02 21:14:21 -08:00
cluster-overview.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
configuration.md [SPARK-5636] Ramp up faster in dynamic allocation 2015-02-06 10:55:13 -08:00
contributing-to-spark.md Work in progress: 2013-09-08 00:29:11 -07:00
ec2-scripts.md Update ec2-scripts.md 2015-02-06 11:04:48 +00:00
graphx-programming-guide.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
hadoop-third-party-distributions.md [SPARK-4501][Core] - Create build/mvn to automatically download maven/zinc/scalac 2014-12-27 13:26:38 -08:00
hardware-provisioning.md Change port from 3030 to 4040 2013-09-11 10:01:38 -07:00
index.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
java-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
job-scheduling.md SPARK-4585. Spark dynamic executor allocation should use minExecutors as... 2015-02-02 12:27:08 -08:00
ml-guide.md [SPARK-5254][MLLIB] remove developers section from spark.ml guide 2015-01-14 18:54:17 -08:00
mllib-classification-regression.md SPARK-2830 [MLlib]: re-organize mllib documentation 2014-08-12 17:15:21 -07:00
mllib-clustering.md [SPARK-5013] [MLlib] Added documentation and sample data file for GaussianMixture 2015-02-06 10:26:51 -08:00
mllib-collaborative-filtering.md [MLlib] fix python example of ALS in guide 2015-01-27 15:33:01 -08:00
mllib-data-types.md [SPARK-2830][MLLIB] doc update for 1.1 2014-08-27 01:19:48 -07:00
mllib-decision-tree.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
mllib-dimensionality-reduction.md SPARK-1307 [DOCS] Don't use term 'standalone' to refer to a Spark Application 2014-10-14 21:37:51 -07:00
mllib-ensembles.md [SPARK-4580] [SPARK-4610] [mllib] [docs] Documentation for tree ensembles + DecisionTree API fix 2014-12-04 09:57:50 +08:00
mllib-feature-extraction.md [SPARK-5207] [MLLIB] StandardScalerModel mean and variance re-use 2015-02-01 09:21:14 -08:00
mllib-guide.md SPARK-5665 [DOCS] Update netlib-java documentation 2015-02-08 16:34:26 -08:00
mllib-linear-methods.md [SPARK-4711] [mllib] [docs] Programming guide advice on choosing optimizer 2014-12-04 08:58:03 +08:00
mllib-naive-bayes.md fixed MLlib Naive-Bayes java example bug 2014-11-04 09:53:43 -08:00
mllib-optimization.md [SPARK-4711] [mllib] [docs] Programming guide advice on choosing optimizer 2014-12-04 08:58:03 +08:00
mllib-statistics.md [SPARK-3964] [MLlib] [PySpark] add Hypothesis test Python API 2014-11-04 21:35:52 -08:00
monitoring.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
programming-guide.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
python-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
quick-start.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
README.md [SPARK-4501][Core] - Create build/mvn to automatically download maven/zinc/scalac 2014-12-27 13:26:38 -08:00
running-on-mesos.md Add mesos specific configurations into doc 2014-12-18 12:15:53 -08:00
running-on-yarn.md [SPARK-2945][YARN][Doc]add doc for spark.executor.instances 2015-02-06 11:58:22 -08:00
scala-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
security.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
spark-standalone.md [SPARK-4771][Docs] Document standalone cluster supervise mode 2014-12-10 12:41:36 -08:00
sql-programming-guide.md [Branch-1.3] [DOC] doc fix for date 2015-02-05 12:42:27 -08:00
storage-openstack-swift.md [SPARK-938][doc] Add OpenStack Swift support 2014-09-07 20:56:04 -07:00
streaming-custom-receivers.md [SPARK-4806] Streaming doc update for 1.2 2014-12-11 06:21:23 -08:00
streaming-flume-integration.md [SPARK-4806] Streaming doc update for 1.2 2014-12-11 06:21:23 -08:00
streaming-kafka-integration.md [SPARK-5058] Part 2. Typos and broken URL 2015-01-23 23:34:11 -08:00
streaming-kinesis-integration.md SPARK-3069 [DOCS] Build instructions in README are outdated 2014-09-16 09:18:03 -07:00
streaming-programming-guide.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00
submitting-applications.md SPARK-4506 [DOCS] Addendum: Update more docs to reflect that standalone works in cluster mode 2015-01-25 15:25:05 -08:00
tuning.md [SPARK-5608] Improve SEO of Spark documentation pages 2015-02-05 11:12:50 -08:00

Welcome to the Spark documentation!

This readme will walk you through navigating and building the Spark documentation, which is included here with the Spark source code. You can also find documentation specific to release versions of Spark at http://spark.apache.org/documentation.html.

Read on to learn more about viewing documentation in plain text (i.e., markdown) or building the documentation yourself. Why build it yourself? So that you have the docs that corresponds to whichever version of Spark you currently have checked out of revision control.

Generating the Documentation HTML

We include the Spark documentation as part of the source (as opposed to using a hosted wiki, such as the github wiki, as the definitive documentation) to enable the documentation to evolve along with the source code and be captured by revision control (currently git). This way the code automatically includes the version of the documentation that is relevant regardless of which version or release you have checked out or downloaded.

In this directory you will find textfiles formatted using Markdown, with an ".md" suffix. You can read those text files directly if you want. Start with index.md.

The markdown code can be compiled to HTML using the Jekyll tool. Jekyll and a few dependencies must be installed for this to work. We recommend installing via the Ruby Gem dependency manager. Since the exact HTML output varies between versions of Jekyll and its dependencies, we list specific versions here in some cases:

$ sudo gem install jekyll
$ sudo gem install jekyll-redirect-from

Execute jekyll from the docs/ directory. Compiling the site with Jekyll will create a directory called _site containing index.html as well as the rest of the compiled files.

You can modify the default Jekyll build as follows:

# Skip generating API docs (which takes a while)
$ SKIP_API=1 jekyll build
# Serve content locally on port 4000
$ jekyll serve --watch
# Build the site with extra features used on the live page
$ PRODUCTION=1 jekyll build

Pygments

We also use pygments (http://pygments.org) for syntax highlighting in documentation markdown pages, so you will also need to install that (it requires Python) by running sudo pip install Pygments.

To mark a block of code in your markdown to be syntax highlighted by jekyll during the compile phase, use the following sytax:

{% highlight scala %}
// Your scala code goes here, you can replace scala with many other
// supported languages too.
{% endhighlight %}

Sphinx

We use Sphinx to generate Python API docs, so you will need to install it by running sudo pip install sphinx.

API Docs (Scaladoc and Sphinx)

You can build just the Spark scaladoc by running build/sbt doc from the SPARK_PROJECT_ROOT directory.

Similarly, you can build just the PySpark docs by running make html from the SPARK_PROJECT_ROOT/python/docs directory. Documentation is only generated for classes that are listed as public in __init__.py.

When you run jekyll in the docs directory, it will also copy over the scaladoc for the various Spark subprojects into the docs directory (and then also into the _site directory). We use a jekyll plugin to run build/sbt doc before building the site so if you haven't run it (recently) it may take some time as it generates all of the scaladoc. The jekyll plugin also generates the PySpark docs Sphinx.

NOTE: To skip the step of building and copying over the Scala and Python API docs, run SKIP_API=1 jekyll.