Apache Spark - A unified analytics engine for large-scale data processing
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Venkata krishnan Sowrirajan 6c4552c650 [SPARK-27338][CORE] Fix deadlock in UnsafeExternalSorter.SpillableIterator when locking both UnsafeExternalSorter.SpillableIterator and TaskMemoryManager
## What changes were proposed in this pull request?

In `UnsafeExternalSorter.SpillableIterator#loadNext()` takes lock on the `UnsafeExternalSorter` and calls `freePage` once the `lastPage` is consumed which needs to take a lock on `TaskMemoryManager`. At the same time, there can be another MemoryConsumer using `UnsafeExternalSorter` as part of sorting can try to `allocatePage` needs to get lock on `TaskMemoryManager` which can cause spill to happen which requires lock on `UnsafeExternalSorter` again causing deadlock. This is a classic deadlock situation happening similar to the SPARK-26265.

To fix this, we can move the `freePage` call in `loadNext` outside of `Synchronized` block similar to the fix in SPARK-26265

## How was this patch tested?

Manual tests were being done and will also try to add a test.

Closes #24265 from venkata91/deadlock-sorter.

Authored-by: Venkata krishnan Sowrirajan <vsowrirajan@qubole.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2019-04-04 09:58:05 +08:00
.github [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
assembly [SPARK-26134][CORE] Upgrading Hadoop to 2.7.4 to fix java.version problem 2018-11-21 23:09:57 -08:00
bin [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
build [SPARK-26144][BUILD] build/mvn should detect scala.version based on scala.binary.version 2018-11-22 14:49:41 -08:00
common [SPARK-27275][CORE] Fix potential corruption in EncryptedMessage.transferTo 2019-03-26 15:48:29 -07:00
conf [SPARK-26890][DOC] Add list of available Dropwizard metrics in Spark and add additional configuration details to the monitoring documentation 2019-02-27 10:07:15 -06:00
core [SPARK-27338][CORE] Fix deadlock in UnsafeExternalSorter.SpillableIterator when locking both UnsafeExternalSorter.SpillableIterator and TaskMemoryManager 2019-04-04 09:58:05 +08:00
data [SPARK-22666][ML][SQL] Spark datasource for image format 2018-09-05 11:59:00 -07:00
dev [SPARK-27216][CORE] Upgrade RoaringBitmap to 0.7.45 to fix Kryo unsafe ser/dser issue 2019-04-03 20:09:50 -05:00
docs [SPARK-26918][DOCS] All .md should have ASF license header 2019-03-30 19:49:45 -05:00
examples [SPARK-24902][K8S] Add PV integration tests 2019-03-27 13:00:56 -07:00
external [SPARK-27323][CORE][SQL][STREAMING] Use Single-Abstract-Method support in Scala 2.12 to simplify code 2019-04-02 07:37:05 -07:00
graphx [SPARK-27323][CORE][SQL][STREAMING] Use Single-Abstract-Method support in Scala 2.12 to simplify code 2019-04-02 07:37:05 -07:00
hadoop-cloud [SPARK-27175][BUILD] Upgrade hadoop-3 to 3.2.0 2019-03-16 19:42:05 -05:00
launcher [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
licenses [SPARK-24654][BUILD] Update, fix LICENSE and NOTICE, and specialize for source vs binary 2018-06-30 19:27:16 -05:00
licenses-binary [SPARK-26986][ML][FOLLOWUP] Add JAXB reference impl to build for Java 9+ 2019-03-01 11:23:40 -06:00
mllib [SPARK-24102][ML][MLLIB][PYSPARK][FOLLOWUP] Added weight column to pyspark API for regression evaluator and metrics 2019-03-26 09:06:04 -05:00
mllib-local [SPARK-19591][ML][MLLIB] Add sample weights to decision trees 2019-01-24 18:20:28 -07:00
project [MINOR][BUILD] Add ASF license header to plugins.sbt 2019-03-30 12:47:02 -05:00
python [MINOR][DOC][SQL] Remove out-of-date doc about ORC in DataFrameReader and Writer 2019-04-03 09:11:09 -07:00
R [SPARK-25496][SQL] Deprecate from_utc_timestamp and to_utc_timestamp 2019-04-03 10:55:56 +08:00
repl [SPARK-27323][CORE][SQL][STREAMING] Use Single-Abstract-Method support in Scala 2.12 to simplify code 2019-04-02 07:37:05 -07:00
resource-managers [SPARK-27180][BUILD][YARN] Fix testing issues with yarn module in Hadoop-3 2019-04-02 15:38:26 -05:00
sbin [SPARK-27056][MESOS] Remove start-shuffle-service.sh 2019-03-08 18:51:38 -06:00
sql Revert "[SPARK-27278][SQL] Optimize GetMapValue when the map is a foldable and the key is not" 2019-04-03 09:41:13 -07:00
streaming [MINOR][DSTREAMS] Add DStreamCheckpointData.cleanup warning if delete returns false 2019-04-02 18:34:40 -05:00
tools [SPARK-25956] Make Scala 2.12 as default Scala version in Spark 3.0 2018-11-14 16:22:23 -08:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [MINOR][DOC] Documentation on JVM options for SBT 2019-01-22 18:27:24 -06:00
appveyor.yml [MINOR][BUILD] Remove -Phive-thriftserver profile within appveyor.yml 2018-07-30 10:01:18 +08:00
CONTRIBUTING.md [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
LICENSE [SPARK-24654][BUILD] Update, fix LICENSE and NOTICE, and specialize for source vs binary 2018-06-30 19:27:16 -05:00
LICENSE-binary [MINOR] Update the scala version of LICENSE-binary to 2.12 2019-03-30 12:46:08 -05:00
NOTICE [SPARK-23654][BUILD] remove jets3t as a dependency of spark 2018-08-16 12:34:23 -07:00
NOTICE-binary [SPARK-27054][BUILD][SQL] Remove the Calcite dependency 2019-03-09 16:34:24 -08:00
pom.xml [SPARK-27216][CORE] Upgrade RoaringBitmap to 0.7.45 to fix Kryo unsafe ser/dser issue 2019-04-03 20:09:50 -05:00
README.md [SPARK-7721][INFRA] Run and generate test coverage report from Python via Jenkins 2019-02-01 10:18:08 +08:00
scalastyle-config.xml [SPARK-25986][BUILD] Add rules to ban throw Errors in application code 2018-11-14 13:05:18 -08:00

Apache Spark

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Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

You can build Spark using more than one thread by using the -T option with Maven, see "Parallel builds in Maven 3". More detailed documentation is available from the project site, at "Building Spark".

For general development tips, including info on developing Spark using an IDE, see "Useful Developer Tools".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

There is also a Kubernetes integration test, see resource-managers/kubernetes/integration-tests/README.md

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version and Enabling YARN" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

Contributing

Please review the Contribution to Spark guide for information on how to get started contributing to the project.