spark-instrumented-optimizer/python
Peng 79ff853631 [SPARK-17645][MLLIB][ML] add feature selector method based on: False Discovery Rate (FDR) and Family wise error rate (FWE)
## What changes were proposed in this pull request?

Univariate feature selection works by selecting the best features based on univariate statistical tests.
FDR and FWE are a popular univariate statistical test for feature selection.
In 2005, the Benjamini and Hochberg paper on FDR was identified as one of the 25 most-cited statistical papers. The FDR uses the Benjamini-Hochberg procedure in this PR. https://en.wikipedia.org/wiki/False_discovery_rate.
In statistics, FWE is the probability of making one or more false discoveries, or type I errors, among all the hypotheses when performing multiple hypotheses tests.
https://en.wikipedia.org/wiki/Family-wise_error_rate

We add  FDR and FWE methods for ChiSqSelector in this PR, like it is implemented in scikit-learn.
http://scikit-learn.org/stable/modules/feature_selection.html#univariate-feature-selection
## How was this patch tested?

ut will be added soon

(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)

(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Author: Peng <peng.meng@intel.com>
Author: Peng, Meng <peng.meng@intel.com>

Closes #15212 from mpjlu/fdr_fwe.
2016-12-28 00:49:36 -08:00
..
docs [SPARK-17960][PYSPARK][UPGRADE TO PY4J 0.10.4] 2016-10-21 09:48:24 +01:00
lib [SPARK-17960][PYSPARK][UPGRADE TO PY4J 0.10.4] 2016-10-21 09:48:24 +01:00
pyspark [SPARK-17645][MLLIB][ML] add feature selector method based on: False Discovery Rate (FDR) and Family wise error rate (FWE) 2016-12-28 00:49:36 -08:00
test_support [SPARK-17585][PYSPARK][CORE] PySpark SparkContext.addFile supports adding files recursively 2016-09-21 01:37:03 -07:00
.gitignore [SPARK-3946] gitignore in /python includes wrong directory 2014-10-14 14:09:39 -07:00
MANIFEST.in [SPARK-18652][PYTHON] Include the example data and third-party licenses in pyspark package. 2016-12-07 06:09:27 +08:00
pylintrc [SPARK-13596][BUILD] Move misc top-level build files into appropriate subdirs 2016-03-07 14:48:02 -08:00
README.md [SPARK-1267][SPARK-18129] Allow PySpark to be pip installed 2016-11-16 14:22:15 -08:00
run-tests [SPARK-8583] [SPARK-5482] [BUILD] Refactor python/run-tests to integrate with dev/run-tests module system 2015-06-27 20:24:34 -07:00
run-tests.py [SPARK-13579][BUILD] Stop building the main Spark assembly. 2016-04-04 16:52:22 -07:00
setup.cfg [SPARK-1267][SPARK-18129] Allow PySpark to be pip installed 2016-11-16 14:22:15 -08:00
setup.py [SPARK-18652][PYTHON] Include the example data and third-party licenses in pyspark package. 2016-12-07 06:09:27 +08:00

Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page

Python Packaging

This README file only contains basic information related to pip installed PySpark. This packaging is currently experimental and may change in future versions (although we will do our best to keep compatibility). Using PySpark requires the Spark JARs, and if you are building this from source please see the builder instructions at "Building Spark".

The Python packaging for Spark is not intended to replace all of the other use cases. This Python packaged version of Spark is suitable for interacting with an existing cluster (be it Spark standalone, YARN, or Mesos) - but does not contain the tools required to setup your own standalone Spark cluster. You can download the full version of Spark from the Apache Spark downloads page.

NOTE: If you are using this with a Spark standalone cluster you must ensure that the version (including minor version) matches or you may experience odd errors.

Python Requirements

At its core PySpark depends on Py4J (currently version 0.10.4), but additional sub-packages have their own requirements (including numpy and pandas).