spark-instrumented-optimizer/R/pkg/inst/tests/testthat/test_utils.R
Felix Cheung c34b546d67 [SPARK-16519][SPARKR] Handle SparkR RDD generics that create warnings in R CMD check
## What changes were proposed in this pull request?

Rename RDD functions for now to avoid CRAN check warnings.
Some RDD functions are sharing generics with DataFrame functions (hence the problem) so after the renames we need to add new generics, for now.

## How was this patch tested?

unit tests

Author: Felix Cheung <felixcheung_m@hotmail.com>

Closes #14626 from felixcheung/rrddfunctions.
2016-08-16 11:19:18 -07:00

187 lines
6.6 KiB
R

#
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context("functions in utils.R")
# JavaSparkContext handle
sparkSession <- sparkR.session(enableHiveSupport = FALSE)
sc <- callJStatic("org.apache.spark.sql.api.r.SQLUtils", "getJavaSparkContext", sparkSession)
test_that("convertJListToRList() gives back (deserializes) the original JLists
of strings and integers", {
# It's hard to manually create a Java List using rJava, since it does not
# support generics well. Instead, we rely on collectRDD() returning a
# JList.
nums <- as.list(1:10)
rdd <- parallelize(sc, nums, 1L)
jList <- callJMethod(rdd@jrdd, "collect")
rList <- convertJListToRList(jList, flatten = TRUE)
expect_equal(rList, nums)
strs <- as.list("hello", "spark")
rdd <- parallelize(sc, strs, 2L)
jList <- callJMethod(rdd@jrdd, "collect")
rList <- convertJListToRList(jList, flatten = TRUE)
expect_equal(rList, strs)
})
test_that("serializeToBytes on RDD", {
# File content
mockFile <- c("Spark is pretty.", "Spark is awesome.")
fileName <- tempfile(pattern = "spark-test", fileext = ".tmp")
writeLines(mockFile, fileName)
text.rdd <- textFile(sc, fileName)
expect_equal(getSerializedMode(text.rdd), "string")
ser.rdd <- serializeToBytes(text.rdd)
expect_equal(collectRDD(ser.rdd), as.list(mockFile))
expect_equal(getSerializedMode(ser.rdd), "byte")
unlink(fileName)
})
test_that("cleanClosure on R functions", {
y <- c(1, 2, 3)
g <- function(x) { x + 1 }
f <- function(x) { g(x) + y }
newF <- cleanClosure(f)
env <- environment(newF)
expect_equal(length(ls(env)), 2) # y, g
actual <- get("y", envir = env, inherits = FALSE)
expect_equal(actual, y)
actual <- get("g", envir = env, inherits = FALSE)
expect_equal(actual, g)
# Test for nested enclosures and package variables.
env2 <- new.env()
funcEnv <- new.env(parent = env2)
f <- function(x) { log(g(x) + y) }
environment(f) <- funcEnv # enclosing relationship: f -> funcEnv -> env2 -> .GlobalEnv
newF <- cleanClosure(f)
env <- environment(newF)
expect_equal(length(ls(env)), 2) # "min" should not be included
actual <- get("y", envir = env, inherits = FALSE)
expect_equal(actual, y)
actual <- get("g", envir = env, inherits = FALSE)
expect_equal(actual, g)
base <- c(1, 2, 3)
l <- list(field = matrix(1))
field <- matrix(2)
defUse <- 3
g <- function(x) { x + y }
f <- function(x) {
defUse <- base::as.integer(x) + 1 # Test for access operators `::`.
lapply(x, g) + 1 # Test for capturing function call "g"'s closure as a argument of lapply.
l$field[1, 1] <- 3 # Test for access operators `$`.
res <- defUse + l$field[1, ] # Test for def-use chain of "defUse", and "" symbol.
f(res) # Test for recursive calls.
}
newF <- cleanClosure(f)
env <- environment(newF)
# TODO(shivaram): length(ls(env)) is 4 here for some reason and `lapply` is included in `env`.
# Disabling this test till we debug this.
#
# nolint start
# expect_equal(length(ls(env)), 3) # Only "g", "l" and "f". No "base", "field" or "defUse".
# nolint end
expect_true("g" %in% ls(env))
expect_true("l" %in% ls(env))
expect_true("f" %in% ls(env))
expect_equal(get("l", envir = env, inherits = FALSE), l)
# "y" should be in the environemnt of g.
newG <- get("g", envir = env, inherits = FALSE)
env <- environment(newG)
expect_equal(length(ls(env)), 1)
actual <- get("y", envir = env, inherits = FALSE)
expect_equal(actual, y)
# Test for function (and variable) definitions.
f <- function(x) {
g <- function(y) { y * 2 }
g(x)
}
newF <- cleanClosure(f)
env <- environment(newF)
expect_equal(length(ls(env)), 0) # "y" and "g" should not be included.
# Test for overriding variables in base namespace (Issue: SparkR-196).
nums <- as.list(1:10)
rdd <- parallelize(sc, nums, 2L)
t <- 4 # Override base::t in .GlobalEnv.
f <- function(x) { x > t }
newF <- cleanClosure(f)
env <- environment(newF)
expect_equal(ls(env), "t")
expect_equal(get("t", envir = env, inherits = FALSE), t)
actual <- collectRDD(lapply(rdd, f))
expected <- as.list(c(rep(FALSE, 4), rep(TRUE, 6)))
expect_equal(actual, expected)
# Test for broadcast variables.
a <- matrix(nrow = 10, ncol = 10, data = rnorm(100))
aBroadcast <- broadcast(sc, a)
normMultiply <- function(x) { norm(aBroadcast$value) * x }
newnormMultiply <- SparkR:::cleanClosure(normMultiply)
env <- environment(newnormMultiply)
expect_equal(ls(env), "aBroadcast")
expect_equal(get("aBroadcast", envir = env, inherits = FALSE), aBroadcast)
})
test_that("varargsToJProperties", {
jprops <- newJObject("java.util.Properties")
expect_true(class(jprops) == "jobj")
jprops <- varargsToJProperties(abc = "123")
expect_true(class(jprops) == "jobj")
expect_equal(callJMethod(jprops, "getProperty", "abc"), "123")
jprops <- varargsToJProperties(abc = "abc", b = 1)
expect_equal(callJMethod(jprops, "getProperty", "abc"), "abc")
expect_equal(callJMethod(jprops, "getProperty", "b"), "1")
jprops <- varargsToJProperties()
expect_equal(callJMethod(jprops, "size"), 0L)
})
test_that("convertToJSaveMode", {
s <- convertToJSaveMode("error")
expect_true(class(s) == "jobj")
expect_match(capture.output(print.jobj(s)), "Java ref type org.apache.spark.sql.SaveMode id ")
expect_error(convertToJSaveMode("foo"),
'mode should be one of "append", "overwrite", "error", "ignore"') #nolint
})
test_that("hashCode", {
expect_error(hashCode("bc53d3605e8a5b7de1e8e271c2317645"), NA)
})
test_that("overrideEnvs", {
config <- new.env()
config[["spark.master"]] <- "foo"
config[["config_only"]] <- "ok"
param <- new.env()
param[["spark.master"]] <- "local"
param[["param_only"]] <- "blah"
overrideEnvs(config, param)
expect_equal(config[["spark.master"]], "local")
expect_equal(config[["param_only"]], "blah")
expect_equal(config[["config_only"]], "ok")
})
sparkR.session.stop()