Apache Spark - A unified analytics engine for large-scale data processing
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Cheng Lian 7dbca68e92 [BUGFIX] In-memory columnar storage bug fixes
Fixed several bugs of in-memory columnar storage to make `HiveInMemoryCompatibilitySuite` pass.

@rxin @marmbrus It is reasonable to include `HiveInMemoryCompatibilitySuite` in this PR, but I didn't, since it significantly increases test execution time. What do you think?

**UPDATE** `HiveCompatibilitySuite` has been made to cache tables in memory. `HiveInMemoryCompatibilitySuite` was removed.

Author: Cheng Lian <lian.cs.zju@gmail.com>
Author: Michael Armbrust <michael@databricks.com>

Closes #374 from liancheng/inMemBugFix and squashes the following commits:

6ad6d9b [Cheng Lian] Merged HiveCompatibilitySuite and HiveInMemoryCompatibilitySuite
5bdbfe7 [Cheng Lian] Revert 882c538 & 8426ddc, which introduced regression
882c538 [Cheng Lian] Remove attributes field from InMemoryColumnarTableScan
32cc9ce [Cheng Lian] Code style cleanup
99382bf [Cheng Lian] Enable compression by default
4390bcc [Cheng Lian] Report error for any Throwable in HiveComparisonTest
d1df4fd [Michael Armbrust] Remove test tables that might always get created anyway?
ab9e807 [Michael Armbrust] Fix the logged console version of failed test cases to use the new syntax.
1965123 [Michael Armbrust] Don't use coalesce for gathering all data to a single partition, as it does not work correctly with mutable rows.
e36cdd0 [Michael Armbrust] Spelling.
2d0e168 [Michael Armbrust] Run Hive tests in-memory too.
6360723 [Cheng Lian] Made PreInsertionCasts support SparkLogicalPlan and InMemoryColumnarTableScan
c9b0f6f [Cheng Lian] Let InsertIntoTable support InMemoryColumnarTableScan
9c8fc40 [Cheng Lian] Disable compression by default
e619995 [Cheng Lian] Bug fix: incorrect byte order in CompressionScheme.columnHeaderSize
8426ddc [Cheng Lian] Bug fix: InMemoryColumnarTableScan should cache columns specified by the attributes argument
036cd09 [Cheng Lian] Clean up unused imports
44591a5 [Cheng Lian] Bug fix: NullableColumnAccessor.hasNext must take nulls into account
052bf41 [Cheng Lian] Bug fix: should only gather compressibility info for non-null values
95b3301 [Cheng Lian] Fixed bugs in IntegralDelta
2014-04-14 15:22:43 -07:00
assembly SPARK-1314: Use SPARK_HIVE to determine if we include Hive in packaging 2014-04-06 17:48:41 -07:00
bagel Remove Unnecessary Whitespace's 2014-04-10 15:04:13 -07:00
bin [SPARK-1276] Add a HistoryServer to render persisted UI 2014-04-10 10:39:34 -07:00
conf Revert "[SPARK-1150] fix repo location in create script" 2014-03-01 17:15:38 -08:00
core [SPARK-1415] Hadoop min split for wholeTextFiles() 2014-04-13 13:18:52 -07:00
data moved user scripts to bin folder 2013-09-23 12:46:48 +08:00
dev SPARK-1431: Allow merging conflicting pull requests 2014-04-06 21:04:45 -07:00
docker [SPARK-1342] Scala 2.10.4 2014-04-01 18:35:50 -07:00
docs Some clean up in build/docs 2014-04-11 10:45:27 -07:00
ec2 Add Spark v0.9.1 to ec2 launch script and use it as the default 2014-04-10 18:25:54 -07:00
examples SPARK-1446: Spark examples should not do a System.exit 2014-04-10 00:37:21 -07:00
external Remove Unnecessary Whitespace's 2014-04-10 15:04:13 -07:00
extras Spark 1271: Co-Group and Group-By should pass Iterable[X] 2014-04-08 18:15:59 -07:00
graphx Remove Unnecessary Whitespace's 2014-04-10 15:04:13 -07:00
mllib [WIP] [SPARK-1328] Add vector statistics 2014-04-11 19:43:22 -07:00
project [SPARK-1386] Web UI for Spark Streaming 2014-04-11 23:33:49 -07:00
python Set spark.executor.uri from environment variable (needed by Mesos) 2014-04-10 17:49:30 -07:00
repl SPARK-1480: Clean up use of classloaders 2014-04-13 08:58:37 -07:00
sbin [SPARK-1276] Add a HistoryServer to render persisted UI 2014-04-10 10:39:34 -07:00
sbt [SQL] Un-ignore a test that is now passing. 2014-03-26 18:19:15 -07:00
sql [BUGFIX] In-memory columnar storage bug fixes 2014-04-14 15:22:43 -07:00
streaming [SPARK-1386] Web UI for Spark Streaming 2014-04-11 23:33:49 -07:00
tools SPARK-1093: Annotate developer and experimental API's 2014-04-09 01:14:46 -07:00
yarn SPARK-1417: Spark on Yarn - spark UI link from resourcemanager is broken 2014-04-11 13:17:48 +05:30
.gitignore SPARK-1336 Reducing the output of run-tests script. 2014-03-29 23:03:03 -07:00
.rat-excludes HOTFIX: Ignore python metastore files in RAT checks. 2014-04-11 13:23:21 -07:00
.travis.yml Cut down the granularity of travis tests. 2014-03-27 08:53:42 -07:00
LICENSE Merge the old sbt-launch-lib.bash with the new sbt-launcher jar downloading logic. 2014-03-02 00:35:23 -08:00
make-distribution.sh fix path for jar, make sed actually work on OSX 2014-03-28 13:33:35 -07:00
NOTICE [SPARK-1212] Adding sparse data support and update KMeans 2014-03-23 17:34:02 -07:00
pom.xml SPARK-1057 (alternative) Remove fastutil 2014-04-11 22:46:47 -07:00
README.md Removed reference to incubation in README.md. 2014-02-26 16:52:26 -08:00
scalastyle-config.xml SPARK-1096, a space after comment start style checker. 2014-03-28 00:21:49 -07:00

Apache Spark

Lightning-Fast Cluster Computing - http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project webpage at http://spark.apache.org/documentation.html. This README file only contains basic setup instructions.

Building

Spark requires Scala 2.10. The project is built using Simple Build Tool (SBT), which can be obtained here. If SBT is installed we will use the system version of sbt otherwise we will attempt to download it automatically. To build Spark and its example programs, run:

./sbt/sbt assembly

Once you've built Spark, the easiest way to start using it is the shell:

./bin/spark-shell

Or, for the Python API, the Python shell (./bin/pyspark).

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> <params>. For example:

./bin/run-example org.apache.spark.examples.SparkLR local[2]

will run the Logistic Regression example locally on 2 CPUs.

Each of the example programs prints usage help if no params are given.

All of the Spark samples take a <master> parameter that is the cluster URL to connect to. This can be a mesos:// or spark:// URL, or "local" to run locally with one thread, or "local[N]" to run locally with N threads.

Running tests

Testing first requires Building Spark. Once Spark is built, tests can be run using:

./sbt/sbt test

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs. You can change the version by setting the SPARK_HADOOP_VERSION environment when building Spark.

For Apache Hadoop versions 1.x, Cloudera CDH MRv1, and other Hadoop versions without YARN, use:

# Apache Hadoop 1.2.1
$ SPARK_HADOOP_VERSION=1.2.1 sbt/sbt assembly

# Cloudera CDH 4.2.0 with MapReduce v1
$ SPARK_HADOOP_VERSION=2.0.0-mr1-cdh4.2.0 sbt/sbt assembly

For Apache Hadoop 2.2.X, 2.1.X, 2.0.X, 0.23.x, Cloudera CDH MRv2, and other Hadoop versions with YARN, also set SPARK_YARN=true:

# Apache Hadoop 2.0.5-alpha
$ SPARK_HADOOP_VERSION=2.0.5-alpha SPARK_YARN=true sbt/sbt assembly

# Cloudera CDH 4.2.0 with MapReduce v2
$ SPARK_HADOOP_VERSION=2.0.0-cdh4.2.0 SPARK_YARN=true sbt/sbt assembly

# Apache Hadoop 2.2.X and newer
$ SPARK_HADOOP_VERSION=2.2.0 SPARK_YARN=true sbt/sbt assembly

When developing a Spark application, specify the Hadoop version by adding the "hadoop-client" artifact to your project's dependencies. For example, if you're using Hadoop 1.2.1 and build your application using SBT, add this entry to libraryDependencies:

"org.apache.hadoop" % "hadoop-client" % "1.2.1"

If your project is built with Maven, add this to your POM file's <dependencies> section:

<dependency>
  <groupId>org.apache.hadoop</groupId>
  <artifactId>hadoop-client</artifactId>
  <version>1.2.1</version>
</dependency>

Configuration

Please refer to the Configuration guide in the online documentation for an overview on how to configure Spark.

Contributing to Spark

Contributions via GitHub pull requests are gladly accepted from their original author. Along with any pull requests, please state that the contribution is your original work and that you license the work to the project under the project's open source license. Whether or not you state this explicitly, by submitting any copyrighted material via pull request, email, or other means you agree to license the material under the project's open source license and warrant that you have the legal authority to do so.