Apache Spark - A unified analytics engine for large-scale data processing
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zsxwing 874a2ca93d [SPARK-7174][Core] Move calling TaskScheduler.executorHeartbeatReceived to another thread
`HeartbeatReceiver` will call `TaskScheduler.executorHeartbeatReceived`, which is a blocking operation because `TaskScheduler.executorHeartbeatReceived` will call

```Scala
    blockManagerMaster.driverEndpoint.askWithReply[Boolean](
      BlockManagerHeartbeat(blockManagerId), 600 seconds)
```

finally. Even if it asks from a local Actor, it may block the current Akka thread. E.g., the reply may be dispatched to the same thread of the ask operation. So the reply cannot be processed. An extreme case is setting the thread number of Akka dispatch thread pool to 1.

jstack log:

```
"sparkDriver-akka.actor.default-dispatcher-14" daemon prio=10 tid=0x00007f2a8c02d000 nid=0x725 waiting on condition [0x00007f2b1d6d0000]
   java.lang.Thread.State: TIMED_WAITING (parking)
	at sun.misc.Unsafe.park(Native Method)
	- parking to wait for  <0x00000006197a0868> (a scala.concurrent.impl.Promise$CompletionLatch)
	at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:226)
	at java.util.concurrent.locks.AbstractQueuedSynchronizer.doAcquireSharedNanos(AbstractQueuedSynchronizer.java:1033)
	at java.util.concurrent.locks.AbstractQueuedSynchronizer.tryAcquireSharedNanos(AbstractQueuedSynchronizer.java:1326)
	at scala.concurrent.impl.Promise$DefaultPromise.tryAwait(Promise.scala:208)
	at scala.concurrent.impl.Promise$DefaultPromise.ready(Promise.scala:218)
	at scala.concurrent.impl.Promise$DefaultPromise.result(Promise.scala:223)
	at scala.concurrent.Await$$anonfun$result$1.apply(package.scala:107)
	at akka.dispatch.MonitorableThreadFactory$AkkaForkJoinWorkerThread$$anon$3.block(ThreadPoolBuilder.scala:169)
	at scala.concurrent.forkjoin.ForkJoinPool.managedBlock(ForkJoinPool.java:3640)
	at akka.dispatch.MonitorableThreadFactory$AkkaForkJoinWorkerThread.blockOn(ThreadPoolBuilder.scala:167)
	at scala.concurrent.Await$.result(package.scala:107)
	at org.apache.spark.rpc.RpcEndpointRef.askWithReply(RpcEnv.scala:355)
	at org.apache.spark.scheduler.DAGScheduler.executorHeartbeatReceived(DAGScheduler.scala:169)
	at org.apache.spark.scheduler.TaskSchedulerImpl.executorHeartbeatReceived(TaskSchedulerImpl.scala:367)
	at org.apache.spark.HeartbeatReceiver$$anonfun$receiveAndReply$1.applyOrElse(HeartbeatReceiver.scala:103)
	at org.apache.spark.rpc.akka.AkkaRpcEnv.org$apache$spark$rpc$akka$AkkaRpcEnv$$processMessage(AkkaRpcEnv.scala:182)
	at org.apache.spark.rpc.akka.AkkaRpcEnv$$anonfun$actorRef$lzycompute$1$1$$anon$1$$anonfun$receiveWithLogging$1$$anonfun$applyOrElse$4.apply$mcV$sp(AkkaRpcEnv.scala:128)
	at org.apache.spark.rpc.akka.AkkaRpcEnv.org$apache$spark$rpc$akka$AkkaRpcEnv$$safelyCall(AkkaRpcEnv.scala:203)
	at org.apache.spark.rpc.akka.AkkaRpcEnv$$anonfun$actorRef$lzycompute$1$1$$anon$1$$anonfun$receiveWithLogging$1.applyOrElse(AkkaRpcEnv.scala:127)
	at scala.runtime.AbstractPartialFunction$mcVL$sp.apply$mcVL$sp(AbstractPartialFunction.scala:33)
	at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:33)
	at scala.runtime.AbstractPartialFunction$mcVL$sp.apply(AbstractPartialFunction.scala:25)
	at org.apache.spark.util.ActorLogReceive$$anon$1.apply(ActorLogReceive.scala:59)
	at org.apache.spark.util.ActorLogReceive$$anon$1.apply(ActorLogReceive.scala:42)
	at scala.PartialFunction$class.applyOrElse(PartialFunction.scala:118)
	at org.apache.spark.util.ActorLogReceive$$anon$1.applyOrElse(ActorLogReceive.scala:42)
	at akka.actor.Actor$class.aroundReceive(Actor.scala:465)
	at org.apache.spark.rpc.akka.AkkaRpcEnv$$anonfun$actorRef$lzycompute$1$1$$anon$1.aroundReceive(AkkaRpcEnv.scala:94)
	at akka.actor.ActorCell.receiveMessage(ActorCell.scala:516)
	at akka.actor.ActorCell.invoke(ActorCell.scala:487)
	at akka.dispatch.Mailbox.processMailbox(Mailbox.scala:238)
	at akka.dispatch.Mailbox.run(Mailbox.scala:220)
	at akka.dispatch.ForkJoinExecutorConfigurator$AkkaForkJoinTask.exec(AbstractDispatcher.scala:393)
	at scala.concurrent.forkjoin.ForkJoinTask.doExec(ForkJoinTask.java:260)
	at scala.concurrent.forkjoin.ForkJoinPool$WorkQueue.runTask(ForkJoinPool.java:1339)
	at scala.concurrent.forkjoin.ForkJoinPool.runWorker(ForkJoinPool.java:1979)
	at scala.concurrent.forkjoin.ForkJoinWorkerThread.run(ForkJoinWorkerThread.java:107)
```

This PR moved this blocking operation to a separated thread.

Author: zsxwing <zsxwing@gmail.com>

Closes #5723 from zsxwing/SPARK-7174 and squashes the following commits:

98bfe48 [zsxwing] Use a single thread for checking timeout and reporting executorHeartbeatReceived
5b3b545 [zsxwing] Move calling `TaskScheduler.executorHeartbeatReceived` to another thread to avoid blocking the Akka thread pool
2015-04-27 21:45:40 -07:00
assembly [SPARK-6122] [CORE] Upgrade tachyon-client version to 0.6.3 2015-04-24 17:57:41 -04:00
bagel [SPARK-6758]block the right jetty package in log 2015-04-09 17:44:08 -04:00
bin [SPARK-4897] [PySpark] Python 3 support 2015-04-16 16:20:57 -07:00
build SPARK-5856: In Maven build script, launch Zinc with more memory 2015-02-17 10:10:01 -08:00
conf [SPARK-6758]block the right jetty package in log 2015-04-09 17:44:08 -04:00
core [SPARK-7174][Core] Move calling TaskScheduler.executorHeartbeatReceived to another thread 2015-04-27 21:45:40 -07:00
data/mllib [SPARK-5939][MLLib] make FPGrowth example app take parameters 2015-02-23 08:47:28 -08:00
dev [SPARK-4925] Publish Spark SQL hive-thriftserver maven artifact 2015-04-27 11:27:56 -07:00
docker [SPARK-1342] Scala 2.10.4 2014-04-01 18:35:50 -07:00
docs [SPARK-7136][Docs] Spark SQL and DataFrame Guide fix example file and paths 2015-04-24 20:25:07 -07:00
ec2 [SPARK-4897] [PySpark] Python 3 support 2015-04-16 16:20:57 -07:00
examples [SPARK-7090] [MLLIB] Introduce LDAOptimizer to LDA to further improve extensibility 2015-04-27 19:02:51 -07:00
external [SPARK-7145] [CORE] commons-lang (2.x) classes used instead of commons-lang3 (3.x); commons-io used without dependency 2015-04-27 19:50:55 -04:00
extras [SPARK-6440][CORE]Handle IPv6 addresses properly when constructing URI 2015-04-13 12:55:25 +01:00
graphx SPARK-6710 GraphX Fixed Wrong initial bias in GraphX SVDPlusPlus 2015-04-11 21:01:23 -07:00
launcher [SPARK-6122] [CORE] Upgrade tachyon-client version to 0.6.3 2015-04-24 17:57:41 -04:00
mllib [SPARK-7090] [MLLIB] Introduce LDAOptimizer to LDA to further improve extensibility 2015-04-27 19:02:51 -07:00
network [SPARK-7003] Improve reliability of connection failure detection between Netty block transfer service endpoints 2015-04-20 09:54:21 -07:00
project [SPARK-7090] [MLLIB] Introduce LDAOptimizer to LDA to further improve extensibility 2015-04-27 19:02:51 -07:00
python [SPARK-7152][SQL] Add a Column expression for partition ID. 2015-04-26 11:46:58 -07:00
R [SPARK-6991] [SPARKR] Adds support for zipPartitions. 2015-04-27 15:04:37 -07:00
repl [SPARK-7092] Update spark scala version to 2.11.6 2015-04-25 18:07:34 -04:00
sbin [SPARK-6952] Handle long args when detecting PID reuse 2015-04-17 11:08:37 +01:00
sbt Adde LICENSE Header to build/mvn, build/sbt and sbt/sbt 2014-12-29 10:48:53 -08:00
sql [SPARK-7145] [CORE] commons-lang (2.x) classes used instead of commons-lang3 (3.x); commons-io used without dependency 2015-04-27 19:50:55 -04:00
streaming Revert "[SPARK-6752][Streaming] Allow StreamingContext to be recreated from checkpoint and existing SparkContext" 2015-04-25 10:37:34 -07:00
tools [SPARK-6428] Turn on explicit type checking for public methods. 2015-04-03 01:25:02 -07:00
yarn [SPARK-7162] [YARN] Launcher error in yarn-client 2015-04-27 19:52:41 -04:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [SPARK-5654] Integrate SparkR 2015-04-08 22:45:40 -07:00
.rat-excludes [SPARK-5654] Integrate SparkR 2015-04-08 22:45:40 -07:00
CONTRIBUTING.md [SPARK-6889] [DOCS] CONTRIBUTING.md updates to accompany contribution doc updates 2015-04-21 22:34:31 -07:00
LICENSE SPARK-5984: Fix TimSort bug causes ArrayOutOfBoundsException 2015-02-28 18:55:34 -08:00
make-distribution.sh [SPARK-6122] [CORE] Upgrade tachyon-client version to 0.6.3 2015-04-24 17:57:41 -04:00
NOTICE SPARK-1827. LICENSE and NOTICE files need a refresh to contain transitive dependency info 2014-05-14 09:38:33 -07:00
pom.xml [SPARK-7092] Update spark scala version to 2.11.6 2015-04-25 18:07:34 -04:00
README.md [docs] [SPARK-6306] Readme points to dead link 2015-03-12 15:01:33 +00:00
scalastyle-config.xml [SPARK-6428] Turn on explicit type checking for public methods. 2015-04-03 01:25:02 -07:00
tox.ini [SPARK-3073] [PySpark] use external sort in sortBy() and sortByKey() 2014-08-26 16:57:40 -07:00

Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, and Python, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and structured data processing, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page and project wiki. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.) More detailed documentation is available from the project site, at "Building Spark".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn-cluster" or "yarn-client" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run all automated tests.

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions. See also "Third Party Hadoop Distributions" for guidance on building a Spark application that works with a particular distribution.

Configuration

Please refer to the Configuration guide in the online documentation for an overview on how to configure Spark.