f377431a57
Add single pseudo-eigenvector PIC Including documentations and updated pom.xml with the following codes: mllib/src/main/scala/org/apache/spark/mllib/clustering/PIClustering.scala mllib/src/test/scala/org/apache/spark/mllib/clustering/PIClusteringSuite.scala Author: sboeschhuawei <stephen.boesch@huawei.com> Author: Fan Jiang <fanjiang.sc@huawei.com> Author: Jiang Fan <fjiang6@gmail.com> Author: Stephen Boesch <stephen.boesch@huawei.com> Author: Xiangrui Meng <meng@databricks.com> Closes #4254 from fjiang6/PIC and squashes the following commits: 4550850 [sboeschhuawei] Removed pic test data f292f31 [Stephen Boesch] Merge pull request #44 from mengxr/SPARK-4259 4b78aaf [Xiangrui Meng] refactor PIC 24fbf52 [sboeschhuawei] Updated API to be similar to KMeans plus other changes requested by Xiangrui on the PR c12dfc8 [sboeschhuawei] Removed examples files and added pic_data.txt. Revamped testcases yet to come 92d4752 [sboeschhuawei] Move the Guassian/ Affinity matrix calcs out of PIC. Presently in the test suite 7ebd149 [sboeschhuawei] Incorporate Xiangrui's first set of PR comments except restructure PIC.run to take Graph but do not remove Gaussian 121e4d5 [sboeschhuawei] Remove unused testing data files 1c3a62e [sboeschhuawei] removed matplot.py and reordered all private methods to bottom of PIC 218a49d [sboeschhuawei] Applied Xiangrui's comments - especially removing RDD/PICLinalg classes and making noncritical methods private 43ab10b [sboeschhuawei] Change last two println's to log4j logger 88aacc8 [sboeschhuawei] Add assert to testcase on cluster sizes 24f438e [sboeschhuawei] fixed incorrect markdown in clustering doc 060e6bf [sboeschhuawei] Added link to PIC doc from the main clustering md doc be659e3 [sboeschhuawei] Added mllib specific log4j 90e7fa4 [sboeschhuawei] Converted from custom Linalg routines to Breeze: added JavaDoc comments; added Markdown documentation bea48ea [sboeschhuawei] Converted custom Linear Algebra datatypes/routines to use Breeze. b29c0db [Fan Jiang] Update PIClustering.scala ace9749 [Fan Jiang] Update PIClustering.scala a112f38 [sboeschhuawei] Added graphx main and test jars as dependencies to mllib/pom.xml f656c34 [sboeschhuawei] Added iris dataset b7dbcbe [sboeschhuawei] Added axes and combined into single plot for matplotlib a2b1e57 [sboeschhuawei] Revert inadvertent update to KMeans 9294263 [sboeschhuawei] Added visualization/plotting of input/output data e5df2b8 [sboeschhuawei] First end to end working PIC 0700335 [sboeschhuawei] First end to end working version: but has bad performance issue 32a90dc [sboeschhuawei] Update circles test data values 0ef163f [sboeschhuawei] Added ConcentricCircles data generation and KMeans clustering 3fd5bc8 [sboeschhuawei] PIClustering is running in new branch (up to the pseudo-eigenvector convergence step) d5aae20 [Jiang Fan] Adding Power Iteration Clustering and Suite test a3c5fbe [Jiang Fan] Adding Power Iteration Clustering
141 lines
4.8 KiB
XML
141 lines
4.8 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
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<!--
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~ Licensed to the Apache Software Foundation (ASF) under one or more
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~ contributor license agreements. See the NOTICE file distributed with
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~ this work for additional information regarding copyright ownership.
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~ The ASF licenses this file to You under the Apache License, Version 2.0
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~ (the "License"); you may not use this file except in compliance with
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~ the License. You may obtain a copy of the License at
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~
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~ http://www.apache.org/licenses/LICENSE-2.0
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~
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~ Unless required by applicable law or agreed to in writing, software
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~ distributed under the License is distributed on an "AS IS" BASIS,
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~ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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~ See the License for the specific language governing permissions and
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~ limitations under the License.
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-->
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<parent>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-parent</artifactId>
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<version>1.3.0-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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</parent>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-mllib_2.10</artifactId>
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<properties>
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<sbt.project.name>mllib</sbt.project.name>
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</properties>
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<packaging>jar</packaging>
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<name>Spark Project ML Library</name>
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<url>http://spark.apache.org/</url>
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<dependencies>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-core_${scala.binary.version}</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-streaming_${scala.binary.version}</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-sql_${scala.binary.version}</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-graphx_${scala.binary.version}</artifactId>
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>org.jblas</groupId>
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<artifactId>jblas</artifactId>
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<version>${jblas.version}</version>
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</dependency>
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<dependency>
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<groupId>org.scalanlp</groupId>
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<artifactId>breeze_${scala.binary.version}</artifactId>
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<version>0.10</version>
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<exclusions>
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<!-- This is included as a compile-scoped dependency by jtransforms, which is
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a dependency of breeze. -->
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<exclusion>
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<groupId>junit</groupId>
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<artifactId>junit</artifactId>
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</exclusion>
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<exclusion>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-math3</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-math3</artifactId>
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</dependency>
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<dependency>
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<groupId>org.scalacheck</groupId>
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<artifactId>scalacheck_${scala.binary.version}</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>junit</groupId>
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<artifactId>junit</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>com.novocode</groupId>
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<artifactId>junit-interface</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.mockito</groupId>
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<artifactId>mockito-all</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-streaming_${scala.binary.version}</artifactId>
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<version>${project.version}</version>
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<type>test-jar</type>
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<scope>test</scope>
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</dependency>
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</dependencies>
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<profiles>
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<profile>
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<id>netlib-lgpl</id>
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<dependencies>
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<dependency>
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<groupId>com.github.fommil.netlib</groupId>
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<artifactId>all</artifactId>
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<version>1.1.2</version>
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<type>pom</type>
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</dependency>
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</dependencies>
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</profile>
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</profiles>
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<build>
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<outputDirectory>target/scala-${scala.binary.version}/classes</outputDirectory>
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<testOutputDirectory>target/scala-${scala.binary.version}/test-classes</testOutputDirectory>
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<resources>
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<resource>
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<directory>../python</directory>
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<includes>
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<include>pyspark/mllib/*.py</include>
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<include>pyspark/mllib/stat/*.py</include>
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<include>pyspark/ml/*.py</include>
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<include>pyspark/ml/param/*.py</include>
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</includes>
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</resource>
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</resources>
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</build>
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</project>
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