Apache Spark - A unified analytics engine for large-scale data processing
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hyukjinkwon 8a545822d0 [SPARK-24364][SS] Prevent InMemoryFileIndex from failing if file path doesn't exist
## What changes were proposed in this pull request?

This PR proposes to follow up https://github.com/apache/spark/pull/15153 and complete SPARK-17599.

`FileSystem` operation (`fs.getFileBlockLocations`) can still fail if the file path does not exist. For example see the exception message below:

```
Error occurred while processing: File does not exist: /rel/00171151/input/PJ/part-00136-b6403bac-a240-44f8-a792-fc2e174682b7-c000.csv
...
java.io.FileNotFoundException: File does not exist: /rel/00171151/input/PJ/part-00136-b6403bac-a240-44f8-a792-fc2e174682b7-c000.csv
...
org.apache.hadoop.hdfs.DistributedFileSystem.getFileBlockLocations(DistributedFileSystem.java:249)
	at org.apache.hadoop.hdfs.DistributedFileSystem.getFileBlockLocations(DistributedFileSystem.java:229)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$listLeafFiles$3.apply(InMemoryFileIndex.scala:314)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$listLeafFiles$3.apply(InMemoryFileIndex.scala:297)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
	at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:186)
	at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
	at scala.collection.mutable.ArrayOps$ofRef.map(ArrayOps.scala:186)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$.org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$listLeafFiles(InMemoryFileIndex.scala:297)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$bulkListLeafFiles$1.apply(InMemoryFileIndex.scala:174)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$$anonfun$org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$bulkListLeafFiles$1.apply(InMemoryFileIndex.scala:173)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
	at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
	at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
	at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
	at scala.collection.AbstractTraversable.map(Traversable.scala:104)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$.org$apache$spark$sql$execution$datasources$InMemoryFileIndex$$bulkListLeafFiles(InMemoryFileIndex.scala:173)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.listLeafFiles(InMemoryFileIndex.scala:126)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.refresh0(InMemoryFileIndex.scala:91)
	at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.<init>(InMemoryFileIndex.scala:67)
	at org.apache.spark.sql.execution.datasources.DataSource.tempFileIndex$lzycompute$1(DataSource.scala:161)
	at org.apache.spark.sql.execution.datasources.DataSource.org$apache$spark$sql$execution$datasources$DataSource$$tempFileIndex$1(DataSource.scala:152)
	at org.apache.spark.sql.execution.datasources.DataSource.getOrInferFileFormatSchema(DataSource.scala:166)
	at org.apache.spark.sql.execution.datasources.DataSource.sourceSchema(DataSource.scala:261)
	at org.apache.spark.sql.execution.datasources.DataSource.sourceInfo$lzycompute(DataSource.scala:94)
	at org.apache.spark.sql.execution.datasources.DataSource.sourceInfo(DataSource.scala:94)
	at org.apache.spark.sql.execution.streaming.StreamingRelation$.apply(StreamingRelation.scala:33)
	at org.apache.spark.sql.streaming.DataStreamReader.load(DataStreamReader.scala:196)
	at org.apache.spark.sql.streaming.DataStreamReader.load(DataStreamReader.scala:206)
	at com.hwx.StreamTest$.main(StreamTest.scala:97)
	at com.hwx.StreamTest.main(StreamTest.scala)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
	at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:906)
	at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:197)
	at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:227)
	at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:136)
	at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
Caused by: org.apache.hadoop.ipc.RemoteException(java.io.FileNotFoundException): File does not exist: /rel/00171151/input/PJ/part-00136-b6403bac-a240-44f8-a792-fc2e174682b7-c000.csv
...
```

So, it fixes it to make a warning instead.

## How was this patch tested?

It's hard to write a test. Manually tested multiple times.

Author: hyukjinkwon <gurwls223@apache.org>

Closes #21408 from HyukjinKwon/missing-files.
2018-05-24 13:21:02 +08:00
.github [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
assembly [SPARK-23807][BUILD] Add Hadoop 3.1 profile with relevant POM fix ups 2018-04-24 09:57:09 -07:00
bin [PYSPARK] Update py4j to version 0.10.7. 2018-05-09 10:47:35 -07:00
build [SPARK-19810][BUILD][CORE] Remove support for Scala 2.10 2017-07-13 17:06:24 +08:00
common [SPARK-23976][CORE] Detect length overflow in UTF8String.concat()/ByteArray.concat() 2018-05-02 10:41:34 +02:00
conf [SPARK-22466][SPARK SUBMIT] export SPARK_CONF_DIR while conf is default 2017-11-09 14:33:08 +09:00
core [MINOR][CORE] Cleanup unused vals in DAGScheduler.handleTaskCompletion 2018-05-24 11:42:25 +08:00
data [SPARK-23205][ML] Update ImageSchema.readImages to correctly set alpha values for four-channel images 2018-01-25 18:15:29 -06:00
dev [SPARK-24322][BUILD] Upgrade Apache ORC to 1.4.4 2018-05-24 11:34:13 +08:00
docs Revert "[SPARK-24244][SQL] Passing only required columns to the CSV parser" 2018-05-23 11:51:13 -07:00
examples [SPARK-22968][DSTREAM] Throw an exception on partition revoking issue 2018-04-17 21:08:42 -05:00
external [SPARK-19185][DSTREAMS] Avoid concurrent use of cached consumers in CachedKafkaConsumer 2018-05-22 13:43:45 -07:00
graphx [SPARK-23028] Bump master branch version to 2.4.0-SNAPSHOT 2018-01-13 00:37:59 +08:00
hadoop-cloud [SPARK-23807][BUILD] Add Hadoop 3.1 profile with relevant POM fix ups 2018-04-24 09:57:09 -07:00
launcher [SPARK-22941][CORE] Do not exit JVM when submit fails with in-process launcher. 2018-04-11 10:13:44 -05:00
licenses [SPARK-19112][CORE] Support for ZStandard codec 2017-11-01 14:54:08 +01:00
mllib [SPARK-20114][ML][FOLLOW-UP] spark.ml parity for sequential pattern mining - PrefixSpan 2018-05-23 11:00:23 -07:00
mllib-local [SPARK-23085][ML] API parity for mllib.linalg.Vectors.sparse 2018-01-19 09:28:35 -06:00
project [SPARK-20087][CORE] Attach accumulators / metrics to 'TaskKilled' end reason 2018-05-22 21:02:17 +08:00
python [SPARK-23935][SQL] Adding map_entries function 2018-05-21 23:14:03 +09:00
R [SPARK-23780][R] Failed to use googleVis library with new SparkR 2018-05-14 19:20:25 -07:00
repl [SPARK-23538][CORE] Remove custom configuration for SSL client. 2018-03-05 15:03:27 -08:00
resource-managers [SPARK-24209][SHS] Automatic retrieve proxyBase from Knox headers 2018-05-21 18:11:05 -07:00
sbin [PYSPARK] Update py4j to version 0.10.7. 2018-05-09 10:47:35 -07:00
sql [SPARK-24364][SS] Prevent InMemoryFileIndex from failing if file path doesn't exist 2018-05-24 13:21:02 +08:00
streaming [SPARK-24209][SHS] Automatic retrieve proxyBase from Knox headers 2018-05-21 18:11:05 -07:00
tools [SPARK-23028] Bump master branch version to 2.4.0-SNAPSHOT 2018-01-13 00:37:59 +08:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [SPARK-23572][DOCS] Bring "security.md" up to date. 2018-03-26 12:45:45 -07:00
.travis.yml [SPARK-18278][SCHEDULER] Spark on Kubernetes - Basic Scheduler Backend 2017-11-28 23:02:09 -08:00
appveyor.yml [SPARK-22817][R] Use fixed testthat version for SparkR tests in AppVeyor 2017-12-17 14:40:41 +09:00
CONTRIBUTING.md [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
LICENSE [PYSPARK] Update py4j to version 0.10.7. 2018-05-09 10:47:35 -07:00
NOTICE [SPARK-18278][SCHEDULER] Spark on Kubernetes - Basic Scheduler Backend 2017-11-28 23:02:09 -08:00
pom.xml [SPARK-24322][BUILD] Upgrade Apache ORC to 1.4.4 2018-05-24 11:34:13 +08:00
README.md [MINOR][DOCS] Replace non-breaking space to normal spaces that breaks rendering markdown 2017-04-03 10:09:11 +01:00
scalastyle-config.xml [SPARK-23550][CORE] Cleanup Utils. 2018-03-07 13:42:06 -08:00

Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

You can build Spark using more than one thread by using the -T option with Maven, see "Parallel builds in Maven 3". More detailed documentation is available from the project site, at "Building Spark".

For general development tips, including info on developing Spark using an IDE, see "Useful Developer Tools".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

Contributing

Please review the Contribution to Spark guide for information on how to get started contributing to the project.