spark-instrumented-optimizer/docs
Xin Ren 9cb1eb7af7 [SPARK-16381][SQL][SPARKR] Update SQL examples and programming guide for R language binding
https://issues.apache.org/jira/browse/SPARK-16381

## What changes were proposed in this pull request?

Update SQL examples and programming guide for R language binding.

Here I just follow example https://github.com/apache/spark/compare/master...liancheng:example-snippet-extraction, created a separate R file to store all the example code.

## How was this patch tested?

Manual test on my local machine.
Screenshot as below:

![screen shot 2016-07-06 at 4 52 25 pm](https://cloud.githubusercontent.com/assets/3925641/16638180/13925a58-439a-11e6-8d57-8451a63dcae9.png)

Author: Xin Ren <iamshrek@126.com>

Closes #14082 from keypointt/SPARK-16381.
2016-07-11 20:05:28 +08:00
..
_data [SPARK-12247][ML][DOC] Documentation for spark.ml's ALS and collaborative filtering in general 2016-02-16 13:03:28 +00:00
_includes [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
_layouts [SPARK-16256][SQL][STREAMING] Added Structured Streaming Programming Guide 2016-06-29 11:45:57 -07:00
_plugins [SPARK-16294][SQL] Labelling support for the include_example Jekyll plugin 2016-06-29 22:50:53 -07:00
css [SPARK-12324][MLLIB][DOC] Fixes the sidebar in the ML documentation 2015-12-16 10:12:33 -08:00
img [MINOR][DOCS] Remove unused images; crush PNGs that could use it for good measure 2016-07-04 09:21:58 +01:00
js [SPARK-12324][MLLIB][DOC] Fixes the sidebar in the ML documentation 2015-12-16 10:12:33 -08:00
_config.yml [SPARK-13189] Cleanup build references to Scala 2.10 2016-02-09 11:56:25 -08:00
api.md [SPARK-8639] [DOCS] Fixed Minor Typos in Documentation 2015-06-27 08:47:00 +03:00
building-spark.md [SPARK-15333][DOCS] Reorganize building-spark.md; rationalize vs wiki 2016-05-17 16:40:38 +01:00
cluster-overview.md [SPARK-7997][CORE] Remove Akka from Spark Core and Streaming 2016-01-22 21:20:04 -08:00
configuration.md [DOC][SQL] update out-of-date code snippets using SQLContext in all documents. 2016-07-06 10:41:48 -07:00
contributing-to-spark.md Work in progress: 2013-09-08 00:29:11 -07:00
ec2-scripts.md [SPARK-14742][DOCS] Redirect spark-ec2 doc to new location 2016-04-20 10:46:02 -07:00
graphx-programming-guide.md [SPARK-16345][DOCUMENTATION][EXAMPLES][GRAPHX] Extract graphx programming guide example snippets from source files instead of hard code them 2016-07-02 16:29:00 +01:00
hadoop-provided.md [SPARK-6511] [docs] Fix example command in hadoop-provided docs. 2015-06-11 15:29:03 -07:00
hardware-provisioning.md [MINOR] fix typo in documents 2016-06-07 13:29:27 +01:00
index.md [SPARK-15238] Clarify supported Python versions 2016-05-11 11:00:12 +01:00
java-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
job-scheduling.md Fix dynamic allocation docs to address cached data. 2016-04-26 09:31:53 +01:00
ml-advanced.md [SPARK-11959][SPARK-15484][DOC][ML] Document WLS and IRLS 2016-05-27 13:16:22 -07:00
ml-ann.md [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
ml-classification-regression.md [SPARK-15608][ML][EXAMPLES][DOC] add examples and documents of ml.isotonic regression 2016-06-16 17:35:40 -07:00
ml-clustering.md [SPARK-15394][ML][DOCS] User guide typos and grammar audit 2016-05-19 23:29:37 -07:00
ml-collaborative-filtering.md [SPARK-15502][DOC][ML][PYSPARK] add guide note that ALS only supports integer ids 2016-05-24 11:34:06 -07:00
ml-decision-tree.md [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
ml-ensembles.md [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
ml-features.md [SPARK-15997][DOC][ML] Update user guide for HashingTF, QuantileVectorizer and CountVectorizer 2016-06-24 13:25:40 +02:00
ml-guide.md [SPARK-15394][ML][DOCS] User guide typos and grammar audit 2016-05-19 23:29:37 -07:00
ml-linear-methods.md [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
ml-survival-regression.md [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
mllib-classification-regression.md [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
mllib-clustering.md [SPARK-16040][MLLIB][DOC] spark.mllib PIC document extra line of refernece 2016-06-19 20:19:40 +01:00
mllib-collaborative-filtering.md [SPARK-12632][PYSPARK][DOC] PySpark fpm and als parameter desc to consistent format 2016-02-22 12:48:37 +02:00
mllib-data-types.md [SPARK-15883][MLLIB][DOCS] Fix broken links in mllib documents 2016-06-11 12:55:38 +01:00
mllib-decision-tree.md [SPARK-15883][MLLIB][DOCS] Fix broken links in mllib documents 2016-06-11 12:55:38 +01:00
mllib-dimensionality-reduction.md [SPARK-13016][DOCUMENTATION] Replace example code in mllib-dimensionality-reduction.md using include_example 2016-02-22 17:16:56 -08:00
mllib-ensembles.md [SPARK-15883][MLLIB][DOCS] Fix broken links in mllib documents 2016-06-11 12:55:38 +01:00
mllib-evaluation-metrics.md [SPARK-15617][ML][DOC] Clarify that fMeasure in MulticlassMetrics is "micro" f1_score 2016-06-04 13:56:04 +01:00
mllib-feature-extraction.md [SPARK-15883][MLLIB][DOCS] Fix broken links in mllib documents 2016-06-11 12:55:38 +01:00
mllib-frequent-pattern-mining.md [MINOR][DOCS] Fix all typos in markdown files of doc and similar patterns in other comments 2016-02-22 09:52:07 +00:00
mllib-guide.md [SPARK-15643][DOC][ML] Add breaking changes to ML migration guide 2016-06-30 17:55:14 -07:00
mllib-isotonic-regression.md [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
mllib-linear-methods.md [SPARK-15883][MLLIB][DOCS] Fix broken links in mllib documents 2016-06-11 12:55:38 +01:00
mllib-migration-guides.md [SPARK-15643][DOC][ML] Update spark.ml and spark.mllib migration guide from 1.6 to 2.0 2016-06-28 11:54:25 -07:00
mllib-naive-bayes.md [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
mllib-optimization.md [SPARK-12212][ML][DOC] Clarifies the difference between spark.ml, spark.mllib and mllib in the documentation. 2015-12-10 12:50:46 -08:00
mllib-pmml-model-export.md [SPARK-15883][MLLIB][DOCS] Fix broken links in mllib documents 2016-06-11 12:55:38 +01:00
mllib-statistics.md [SPARK-15883][MLLIB][DOCS] Fix broken links in mllib documents 2016-06-11 12:55:38 +01:00
monitoring.md [SPARK-15966][DOC] Add closing tag to fix rendering issue for Spark monitoring 2016-06-16 17:46:19 -07:00
programming-guide.md [SPARK-16025][CORE] Document OFF_HEAP storage level in 2.0 2016-06-20 21:56:44 -07:00
python-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
quick-start.md [DOCUMENTATION] Fixed target JAR path 2016-06-08 17:22:55 +01:00
README.md [SPARK-15412][PYSPARK][SPARKR][DOCS] Improve linear isotonic regression pydoc & doc build insturctions 2016-05-24 22:20:00 -07:00
running-on-mesos.md [SPARK-11857][MESOS] Deprecate fine grained 2016-07-08 20:20:26 -07:00
running-on-yarn.md [SPARK-15990][YARN] Add rolling log aggregation support for Spark on yarn 2016-06-29 08:17:27 -05:00
scala-programming-guide.md [SPARK-1566] consolidate programming guide, and general doc updates 2014-05-30 00:34:33 -07:00
security.md [SPARK-4224][CORE][YARN] Support group acls 2016-05-04 08:45:43 -05:00
spark-standalone.md [SPARK-15806][DOCUMENTATION] update doc for SPARK_MASTER_IP 2016-06-12 14:25:48 +01:00
sparkr.md [SPARK-16088][SPARKR] update setJobGroup, cancelJobGroup, clearJobGroup 2016-06-23 09:45:01 -07:00
sql-programming-guide.md [SPARK-16381][SQL][SPARKR] Update SQL examples and programming guide for R language binding 2016-07-11 20:05:28 +08:00
storage-openstack-swift.md [SPARK-938][doc] Add OpenStack Swift support 2014-09-07 20:56:04 -07:00
streaming-custom-receivers.md [MINOR] Fix Typos 'a -> an' 2016-05-26 22:39:14 -07:00
streaming-flume-integration.md [MINOR][DOCS] Fix all typos in markdown files of doc and similar patterns in other comments 2016-02-22 09:52:07 +00:00
streaming-kafka-integration.md [DOCS] fix example code issues in documentation 2016-05-30 09:12:02 -05:00
streaming-kinesis-integration.md [SPARK-13595][BUILD] Move docker, extras modules into external 2016-03-09 18:27:44 +00:00
streaming-programming-guide.md [DOC][SQL] update out-of-date code snippets using SQLContext in all documents. 2016-07-06 10:41:48 -07:00
structured-streaming-programming-guide.md [SPARK-16256][DOCS] Fix window operation diagram 2016-06-30 14:01:34 -07:00
submitting-applications.md [DOCS][MINOR] Remove sentence about Mesos not supporting cluster mode. 2016-04-07 17:41:55 -07:00
tuning.md [SPARK-15796][CORE] Reduce spark.memory.fraction default to avoid overrunning old gen in JVM default config 2016-06-16 23:04:10 +02:00

Welcome to the Spark documentation!

This readme will walk you through navigating and building the Spark documentation, which is included here with the Spark source code. You can also find documentation specific to release versions of Spark at http://spark.apache.org/documentation.html.

Read on to learn more about viewing documentation in plain text (i.e., markdown) or building the documentation yourself. Why build it yourself? So that you have the docs that corresponds to whichever version of Spark you currently have checked out of revision control.

Prerequisites

The Spark documentation build uses a number of tools to build HTML docs and API docs in Scala, Python and R.

You need to have Ruby and Python installed. Also install the following libraries:

    $ sudo gem install jekyll jekyll-redirect-from pygments.rb
    $ sudo pip install Pygments
    # Following is needed only for generating API docs
    $ sudo pip install sphinx
    $ sudo Rscript -e 'install.packages(c("knitr", "devtools", "roxygen2", "testthat"), repos="http://cran.stat.ucla.edu/")'

(Note: If you are on a system with both Ruby 1.9 and Ruby 2.0 you may need to replace gem with gem2.0)

Generating the Documentation HTML

We include the Spark documentation as part of the source (as opposed to using a hosted wiki, such as the github wiki, as the definitive documentation) to enable the documentation to evolve along with the source code and be captured by revision control (currently git). This way the code automatically includes the version of the documentation that is relevant regardless of which version or release you have checked out or downloaded.

In this directory you will find textfiles formatted using Markdown, with an ".md" suffix. You can read those text files directly if you want. Start with index.md.

Execute jekyll build from the docs/ directory to compile the site. Compiling the site with Jekyll will create a directory called _site containing index.html as well as the rest of the compiled files.

$ cd docs
$ jekyll build

You can modify the default Jekyll build as follows:

    # Skip generating API docs (which takes a while)
    $ SKIP_API=1 jekyll build
    
    # Serve content locally on port 4000
    $ jekyll serve --watch
    
    # Build the site with extra features used on the live page
    $ PRODUCTION=1 jekyll build

API Docs (Scaladoc, Sphinx, roxygen2)

You can build just the Spark scaladoc by running build/sbt unidoc from the SPARK_PROJECT_ROOT directory.

Similarly, you can build just the PySpark docs by running make html from the SPARK_PROJECT_ROOT/python/docs directory. Documentation is only generated for classes that are listed as public in __init__.py. The SparkR docs can be built by running SPARK_PROJECT_ROOT/R/create-docs.sh.

When you run jekyll in the docs directory, it will also copy over the scaladoc for the various Spark subprojects into the docs directory (and then also into the _site directory). We use a jekyll plugin to run build/sbt unidoc before building the site so if you haven't run it (recently) it may take some time as it generates all of the scaladoc. The jekyll plugin also generates the PySpark docs using Sphinx.

NOTE: To skip the step of building and copying over the Scala, Python, R API docs, run SKIP_API=1 jekyll.