Apache Spark - A unified analytics engine for large-scale data processing
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Wenchen Fan a45133b826 [SPARK-21743][SQL] top-most limit should not cause memory leak
## What changes were proposed in this pull request?

For top-most limit, we will use a special operator to execute it: `CollectLimitExec`.

`CollectLimitExec` will retrieve `n`(which is the limit) rows from each partition of the child plan output, see https://github.com/apache/spark/blob/v2.2.0/sql/core/src/main/scala/org/apache/spark/sql/execution/SparkPlan.scala#L311. It's very likely that we don't exhaust the child plan output.

This is fine when whole-stage-codegen is off, as child plan will release the resource via task completion listener. However, when whole-stage codegen is on, the resource can only be released if all output is consumed.

To fix this memory leak, one simple approach is, when `CollectLimitExec` retrieve `n` rows from child plan output, child plan output should only have `n` rows, then the output is exhausted and resource is released. This can be done by wrapping child plan with `LocalLimit`

## How was this patch tested?

a regression test

Author: Wenchen Fan <wenchen@databricks.com>

Closes #18955 from cloud-fan/leak.
2017-08-16 22:37:45 -07:00
.github [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
assembly [SPARK-21422][BUILD] Depend on Apache ORC 1.4.0 2017-08-15 23:00:13 -07:00
bin [SPARK-19810][BUILD][CORE] Remove support for Scala 2.10 2017-07-13 17:06:24 +08:00
build [SPARK-19810][BUILD][CORE] Remove support for Scala 2.10 2017-07-13 17:06:24 +08:00
common [SPARK-21671][CORE] Move kvstore to "util" sub-package, add private annotation. 2017-08-08 14:33:27 -07:00
conf [SPARK-21305][ML][MLLIB] Add options to disable multi-threading of native BLAS 2017-07-12 11:02:04 +01:00
core [SPARK-3151][BLOCK MANAGER] DiskStore.getBytes fails for files larger than 2GB 2017-08-17 09:21:50 +08:00
data [SPARK-16421][EXAMPLES][ML] Improve ML Example Outputs 2016-08-05 20:57:46 +01:00
dev [SPARK-21422][BUILD] Depend on Apache ORC 1.4.0 2017-08-15 23:00:13 -07:00
docs [SPARK-21519][SQL] Add an option to the JDBC data source to initialize the target DB environment 2017-08-11 12:03:37 -07:00
examples [SPARK-21731][BUILD] Upgrade scalastyle to 0.9. 2017-08-15 13:59:00 -07:00
external [SPARK-21731][BUILD] Upgrade scalastyle to 0.9. 2017-08-15 13:59:00 -07:00
graphx [SPARK-21731][BUILD] Upgrade scalastyle to 0.9. 2017-08-15 13:59:00 -07:00
hadoop-cloud [SPARK-7481][BUILD] Add spark-hadoop-cloud module to pull in object store access. 2017-05-07 10:15:31 +01:00
launcher [SPARK-17742][CORE] Handle child process exit in SparkLauncher. 2017-08-15 11:26:29 -07:00
licenses [MINOR][BUILD] Add modernizr MIT license; specify "2014 and onwards" in license copyright 2016-06-04 21:41:27 +01:00
mllib [SPARK-21680][ML][MLLIB] optimize Vector compress 2017-08-16 19:05:20 +01:00
mllib-local [SPARK-21680][ML][MLLIB] optimize Vector compress 2017-08-16 19:05:20 +01:00
project [SPARK-21680][ML][MLLIB] optimize Vector compress 2017-08-16 19:05:20 +01:00
python [SPARK-21712][PYSPARK] Clarify type error for Column.substr() 2017-08-16 11:19:15 +09:00
R [SPARK-21622][ML][SPARKR] Support offset in SparkR GLM 2017-08-06 15:14:12 -07:00
repl [SPARK-21339][CORE] spark-shell --packages option does not add jars to classpath on windows 2017-08-01 13:39:23 -07:00
resource-managers [SPARK-21731][BUILD] Upgrade scalastyle to 0.9. 2017-08-15 13:59:00 -07:00
sbin [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
sql [SPARK-21743][SQL] top-most limit should not cause memory leak 2017-08-16 22:37:45 -07:00
streaming [SPARK-21731][BUILD] Upgrade scalastyle to 0.9. 2017-08-15 13:59:00 -07:00
tools [SPARK-20453] Bump master branch version to 2.3.0-SNAPSHOT 2017-04-24 21:48:04 -07:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [SPARK-21485][SQL][DOCS] Spark SQL documentation generation for built-in functions 2017-07-26 09:38:51 -07:00
.travis.yml [SPARK-19801][BUILD] Remove JDK7 from Travis CI 2017-03-03 12:00:54 +01:00
appveyor.yml [MINOR][R] Add knitr and rmarkdown packages/improve output for version info in AppVeyor tests 2017-06-18 08:43:47 +01:00
CONTRIBUTING.md [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
LICENSE [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
NOTICE [SPARK-18262][BUILD][SQL] JSON.org license is now CatX 2016-11-10 10:20:03 -08:00
pom.xml [SPARK-21422][BUILD] Depend on Apache ORC 1.4.0 2017-08-15 23:00:13 -07:00
README.md [MINOR][DOCS] Replace non-breaking space to normal spaces that breaks rendering markdown 2017-04-03 10:09:11 +01:00
scalastyle-config.xml [SPARK-13747][CORE] Add ThreadUtils.awaitReady and disallow Await.ready 2017-05-17 17:21:46 -07:00

Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

You can build Spark using more than one thread by using the -T option with Maven, see "Parallel builds in Maven 3". More detailed documentation is available from the project site, at "Building Spark".

For general development tips, including info on developing Spark using an IDE, see "Useful Developer Tools".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

Contributing

Please review the Contribution to Spark guide for information on how to get started contributing to the project.