Apache Spark - A unified analytics engine for large-scale data processing
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wangmiao1981 a7b46c627b [SPARK-20307][SPARKR] SparkR: pass on setHandleInvalid to spark.mllib functions that use StringIndexer
## What changes were proposed in this pull request?

For randomForest classifier, if test data contains unseen labels, it will throw an error. The StringIndexer already has the handleInvalid logic. The patch add a new method to set the underlying StringIndexer handleInvalid logic.

This patch should also apply to other classifiers. This PR focuses on the main logic and randomForest classifier. I will do follow-up PR for other classifiers.

## How was this patch tested?

Add a new unit test based on the error case in the JIRA.

Author: wangmiao1981 <wm624@hotmail.com>

Closes #18496 from wangmiao1981/handle.
2017-07-07 23:51:32 -07:00
.github [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
assembly [SPARK-7481][BUILD] Add spark-hadoop-cloud module to pull in object store access. 2017-05-07 10:15:31 +01:00
bin [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
build [SPARK-19550][BUILD][CORE][WIP] Remove Java 7 support 2017-02-16 12:32:45 +00:00
common [SPARK-17528][SQL] data should be copied properly before saving into InternalRow 2017-07-01 09:25:29 +08:00
conf [SPARK-20995][CORE] Spark-env.sh.template' should add 'YARN_CONF_DIR' configuration instructions. 2017-06-09 09:26:30 +01:00
core [SPARK-20379][CORE] Allow SSL config to reference env variables. 2017-07-08 14:20:09 +08:00
data [SPARK-16421][EXAMPLES][ML] Improve ML Example Outputs 2016-08-05 20:57:46 +01:00
dev [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
docs [SPARK-21069][SS][DOCS] Add rate source to programming guide. 2017-07-07 23:33:12 -07:00
examples [MINOR][BUILD] Fix Java linter errors 2017-06-19 20:17:54 +01:00
external [SPARK-18004][SQL] Make sure the date or timestamp related predicate can be pushed down to Oracle correctly 2017-07-02 17:37:47 -07:00
graphx [SPARK-20523][BUILD] Clean up build warnings for 2.2.0 release 2017-05-03 10:18:35 +01:00
hadoop-cloud [SPARK-7481][BUILD] Add spark-hadoop-cloud module to pull in object store access. 2017-05-07 10:15:31 +01:00
launcher [SPARK-20922][CORE] Add whitelist of classes that can be deserialized by the launcher. 2017-06-01 14:44:34 -07:00
licenses [MINOR][BUILD] Add modernizr MIT license; specify "2014 and onwards" in license copyright 2016-06-04 21:41:27 +01:00
mllib [SPARK-20307][SPARKR] SparkR: pass on setHandleInvalid to spark.mllib functions that use StringIndexer 2017-07-07 23:51:32 -07:00
mllib-local [SPARK-20677][MLLIB][ML] Follow-up to ALS recommend-all performance PRs 2017-05-16 10:59:34 +02:00
project [SPARK-19937] Collect metrics for remote bytes read to disk during shuffle. 2017-06-22 14:10:51 -07:00
python [SPARK-21327][SQL][PYSPARK] ArrayConstructor should handle an array of typecode 'l' as long rather than int in Python 2. 2017-07-07 14:05:22 +09:00
R [SPARK-20307][SPARKR] SparkR: pass on setHandleInvalid to spark.mllib functions that use StringIndexer 2017-07-07 23:51:32 -07:00
repl [SPARK-20548][FLAKY-TEST] share one REPL instance among REPL test cases 2017-05-10 00:09:35 +08:00
resource-managers [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
sbin [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
sql [SPARK-21281][SQL] Use string types by default if array and map have no argument 2017-07-07 23:05:38 -07:00
streaming [SPARK-19688][STREAMING] Not to read spark.yarn.credentials.file from checkpoint. 2017-06-19 10:24:29 -07:00
tools [SPARK-20453] Bump master branch version to 2.3.0-SNAPSHOT 2017-04-24 21:48:04 -07:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [MINOR][SPARKR] ignore Rplots.pdf test output after running R tests 2017-07-04 12:37:29 -07:00
.travis.yml [SPARK-19801][BUILD] Remove JDK7 from Travis CI 2017-03-03 12:00:54 +01:00
appveyor.yml [MINOR][R] Add knitr and rmarkdown packages/improve output for version info in AppVeyor tests 2017-06-18 08:43:47 +01:00
CONTRIBUTING.md [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
LICENSE [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6 2017-07-05 16:33:23 -07:00
NOTICE [SPARK-18262][BUILD][SQL] JSON.org license is now CatX 2016-11-10 10:20:03 -08:00
pom.xml Revert "[SPARK-13534][PYSPARK] Using Apache Arrow to increase performance of DataFrame.toPandas" 2017-06-28 14:28:40 +08:00
README.md [MINOR][DOCS] Replace non-breaking space to normal spaces that breaks rendering markdown 2017-04-03 10:09:11 +01:00
scalastyle-config.xml [SPARK-13747][CORE] Add ThreadUtils.awaitReady and disallow Await.ready 2017-05-17 17:21:46 -07:00

Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

You can build Spark using more than one thread by using the -T option with Maven, see "Parallel builds in Maven 3". More detailed documentation is available from the project site, at "Building Spark".

For general development tips, including info on developing Spark using an IDE, see "Useful Developer Tools".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

Contributing

Please review the Contribution to Spark guide for information on how to get started contributing to the project.