Apache Spark - A unified analytics engine for large-scale data processing
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Takeshi Yamamuro ccba622e35 [SPARK-19896][SQL] Throw an exception if case classes have circular references in toDS
## What changes were proposed in this pull request?
If case classes have circular references below, it throws StackOverflowError;
```
scala> :pasge
case class classA(i: Int, cls: classB)
case class classB(cls: classA)

scala> Seq(classA(0, null)).toDS()
java.lang.StackOverflowError
  at scala.reflect.internal.Symbols$Symbol.info(Symbols.scala:1494)
  at scala.reflect.runtime.JavaMirrors$JavaMirror$$anon$1.scala$reflect$runtime$SynchronizedSymbols$SynchronizedSymbol$$super$info(JavaMirrors.scala:66)
  at scala.reflect.runtime.SynchronizedSymbols$SynchronizedSymbol$$anonfun$info$1.apply(SynchronizedSymbols.scala:127)
  at scala.reflect.runtime.SynchronizedSymbols$SynchronizedSymbol$$anonfun$info$1.apply(SynchronizedSymbols.scala:127)
  at scala.reflect.runtime.Gil$class.gilSynchronized(Gil.scala:19)
  at scala.reflect.runtime.JavaUniverse.gilSynchronized(JavaUniverse.scala:16)
  at scala.reflect.runtime.SynchronizedSymbols$SynchronizedSymbol$class.gilSynchronizedIfNotThreadsafe(SynchronizedSymbols.scala:123)
  at scala.reflect.runtime.JavaMirrors$JavaMirror$$anon$1.gilSynchronizedIfNotThreadsafe(JavaMirrors.scala:66)
  at scala.reflect.runtime.SynchronizedSymbols$SynchronizedSymbol$class.info(SynchronizedSymbols.scala:127)
  at scala.reflect.runtime.JavaMirrors$JavaMirror$$anon$1.info(JavaMirrors.scala:66)
  at scala.reflect.internal.Mirrors$RootsBase.getModuleOrClass(Mirrors.scala:48)
  at scala.reflect.internal.Mirrors$RootsBase.getModuleOrClass(Mirrors.scala:45)
  at scala.reflect.internal.Mirrors$RootsBase.getModuleOrClass(Mirrors.scala:45)
  at scala.reflect.internal.Mirrors$RootsBase.getModuleOrClass(Mirrors.scala:45)
  at scala.reflect.internal.Mirrors$RootsBase.getModuleOrClass(Mirrors.scala:45)
```
This pr added code to throw UnsupportedOperationException in that case as follows;
```
scala> :paste
case class A(cls: B)
case class B(cls: A)

scala> Seq(A(null)).toDS()
java.lang.UnsupportedOperationException: cannot have circular references in class, but got the circular reference of class B
  at org.apache.spark.sql.catalyst.ScalaReflection$.org$apache$spark$sql$catalyst$ScalaReflection$$serializerFor(ScalaReflection.scala:627)
  at org.apache.spark.sql.catalyst.ScalaReflection$$anonfun$9.apply(ScalaReflection.scala:644)
  at org.apache.spark.sql.catalyst.ScalaReflection$$anonfun$9.apply(ScalaReflection.scala:632)
  at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
  at scala.collection.TraversableLike$$anonfun$flatMap$1.apply(TraversableLike.scala:241)
  at scala.collection.immutable.List.foreach(List.scala:381)
  at scala.collection.TraversableLike$class.flatMap(TraversableLike.scala:241)
```

## How was this patch tested?
Added tests in `DatasetSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #17318 from maropu/SPARK-19896.
2017-03-18 14:40:16 +08:00
.github [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
assembly [SPARK-19550][BUILD][CORE][WIP] Remove Java 7 support 2017-02-16 12:32:45 +00:00
bin [SPARK-1267][SPARK-18129] Allow PySpark to be pip installed 2016-11-16 14:22:15 -08:00
build [SPARK-19550][BUILD][CORE][WIP] Remove Java 7 support 2017-02-16 12:32:45 +00:00
common [SPARK-19843][SQL][FOLLOWUP] Classdoc for IntWrapper and LongWrapper 2017-03-08 09:38:05 -08:00
conf [SPARK-17979][SPARK-14453] Remove deprecated SPARK_YARN_USER_ENV and SPARK_JAVA_OPTS 2017-03-10 13:34:01 -08:00
core [SPARK-13369] Add config for number of consecutive fetch failures 2017-03-17 09:33:58 -05:00
data [SPARK-16421][EXAMPLES][ML] Improve ML Example Outputs 2016-08-05 20:57:46 +01:00
dev [SPARK-19550] Follow-up: fixed a typo that fails the dev/make-distribution.sh script. 2017-02-18 14:08:59 +00:00
docs [SPARK-13369] Add config for number of consecutive fetch failures 2017-03-17 09:33:58 -05:00
examples [SPARK-19345][ML][DOC] Add doc for "coldStartStrategy" usage in ALS 2017-03-02 15:51:16 +02:00
external [SPARK-19721][SS] Good error message for version mismatch in log files 2017-03-16 13:05:36 -07:00
graphx [SPARK-18847][GRAPHX] PageRank gives incorrect results for graphs with sinks 2017-03-17 14:23:07 -07:00
launcher [SPARK-17979][SPARK-14453] Remove deprecated SPARK_YARN_USER_ENV and SPARK_JAVA_OPTS 2017-03-10 13:34:01 -08:00
licenses [MINOR][BUILD] Add modernizr MIT license; specify "2014 and onwards" in license copyright 2016-06-04 21:41:27 +01:00
mllib [SPARK-19635][ML] DataFrame-based API for chi square test 2017-03-16 17:10:15 -07:00
mllib-local [SPARK-19402][DOCS] Support LaTex inline formula correctly and fix warnings in Scala/Java APIs generation 2017-02-01 13:26:16 +00:00
project [SPARK-19874][BUILD] Hide API docs for org.apache.spark.sql.internal 2017-03-08 23:15:52 -08:00
python [SPARK-19986][TESTS] Make pyspark.streaming.tests.CheckpointTests more stable 2017-03-17 11:12:23 -07:00
R [SPARK-19828][R] Support array type in from_json in R 2017-03-14 19:51:25 -07:00
repl [SPARK-18055][SQL] Use correct mirror in ExpresionEncoder 2017-03-08 01:32:42 -08:00
resource-managers [SPARK-17979][SPARK-14453] Remove deprecated SPARK_YARN_USER_ENV and SPARK_JAVA_OPTS 2017-03-10 13:34:01 -08:00
sbin [SPARK-19083] sbin/start-history-server.sh script use of $@ without quotes 2017-01-06 09:57:49 -08:00
sql [SPARK-19896][SQL] Throw an exception if case classes have circular references in toDS 2017-03-18 14:40:16 +08:00
streaming [DOCS][SS] fix structured streaming python example 2017-03-12 08:29:37 +00:00
tools [SPARK-18695] Bump master branch version to 2.2.0-SNAPSHOT 2016-12-02 21:09:37 -08:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [SPARK-19562][BUILD] Added exclude for dev/pr-deps to gitignore 2017-02-13 11:22:31 +00:00
.travis.yml [SPARK-19801][BUILD] Remove JDK7 from Travis CI 2017-03-03 12:00:54 +01:00
appveyor.yml [SPARK-19660][CORE][SQL] Replace the configuration property names that are deprecated in the version of Hadoop 2.6 2017-02-28 10:13:42 +00:00
CONTRIBUTING.md [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
LICENSE [SPARK-17960][PYSPARK][UPGRADE TO PY4J 0.10.4] 2016-10-21 09:48:24 +01:00
NOTICE [SPARK-18262][BUILD][SQL] JSON.org license is now CatX 2016-11-10 10:20:03 -08:00
pom.xml [SPARK-19405][STREAMING] Support for cross-account Kinesis reads via STS 2017-02-22 11:32:36 -05:00
README.md [MINOR][DOCS] Remove Apache Spark Wiki address 2016-12-10 16:40:10 +00:00
scalastyle-config.xml [SPARK-13747][CORE] Fix potential ThreadLocal leaks in RPC when using ForkJoinPool 2016-12-13 09:53:22 -08:00

Apache Spark

Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

You can build Spark using more than one thread by using the -T option with Maven, see "Parallel builds in Maven 3". More detailed documentation is available from the project site, at "Building Spark".

For general development tips, including info on developing Spark using an IDE, see "Useful Developer Tools".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

## Contributing

Please review the Contribution to Spark guide for information on how to get started contributing to the project.