spark-instrumented-optimizer/python/pyspark/ml/tests.py
Xiangrui Meng cf4e04a0c5 [SPARK-7380] [MLLIB] pipeline stages should be copyable in Python
This PR makes pipeline stages in Python copyable and hence simplifies some implementations. It also includes the following changes:

1. Rename `paramMap` and `defaultParamMap` to `_paramMap` and `_defaultParamMap`, respectively.
2. Accept a list of param maps in `fit`.
3. Use parent uid and name to identify param.

jkbradley

Author: Xiangrui Meng <meng@databricks.com>
Author: Joseph K. Bradley <joseph@databricks.com>

Closes #6088 from mengxr/SPARK-7380 and squashes the following commits:

413c463 [Xiangrui Meng] remove unnecessary doc
4159f35 [Xiangrui Meng] Merge remote-tracking branch 'apache/master' into SPARK-7380
611c719 [Xiangrui Meng] fix python style
68862b8 [Xiangrui Meng] update _java_obj initialization
927ad19 [Xiangrui Meng] fix ml/tests.py
0138fc3 [Xiangrui Meng] update feature transformers and fix a bug in RegexTokenizer
9ca44fb [Xiangrui Meng] simplify Java wrappers and add tests
c7d84ef [Xiangrui Meng] update ml/tests.py to test copy params
7e0d27f [Xiangrui Meng] merge master
46840fb [Xiangrui Meng] update wrappers
b6db1ed [Xiangrui Meng] update all self.paramMap to self._paramMap
46cb6ed [Xiangrui Meng] merge master
a163413 [Xiangrui Meng] fix style
1042e80 [Xiangrui Meng] Merge remote-tracking branch 'apache/master' into SPARK-7380
9630eae [Xiangrui Meng] fix Identifiable._randomUID
13bd70a [Xiangrui Meng] update ml/tests.py
64a536c [Xiangrui Meng] use _fit/_transform/_evaluate to simplify the impl
02abf13 [Xiangrui Meng] Merge remote-tracking branch 'apache/master' into copyable-python
66ce18c [Joseph K. Bradley] some cleanups before sending to Xiangrui
7431272 [Joseph K. Bradley] Rebased with master

(cherry picked from commit 9c7e802a5a)
Signed-off-by: Xiangrui Meng <meng@databricks.com>
2015-05-18 12:02:26 -07:00

205 lines
7 KiB
Python

#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
"""
Unit tests for Spark ML Python APIs.
"""
import sys
if sys.version_info[:2] <= (2, 6):
try:
import unittest2 as unittest
except ImportError:
sys.stderr.write('Please install unittest2 to test with Python 2.6 or earlier')
sys.exit(1)
else:
import unittest
from pyspark.tests import ReusedPySparkTestCase as PySparkTestCase
from pyspark.sql import DataFrame, SQLContext
from pyspark.ml.param import Param, Params
from pyspark.ml.param.shared import HasMaxIter, HasInputCol
from pyspark.ml import Estimator, Model, Pipeline, Transformer
from pyspark.ml.feature import *
from pyspark.mllib.linalg import DenseVector
class MockDataset(DataFrame):
def __init__(self):
self.index = 0
class HasFake(Params):
def __init__(self):
super(HasFake, self).__init__()
self.fake = Param(self, "fake", "fake param")
def getFake(self):
return self.getOrDefault(self.fake)
class MockTransformer(Transformer, HasFake):
def __init__(self):
super(MockTransformer, self).__init__()
self.dataset_index = None
def _transform(self, dataset):
self.dataset_index = dataset.index
dataset.index += 1
return dataset
class MockEstimator(Estimator, HasFake):
def __init__(self):
super(MockEstimator, self).__init__()
self.dataset_index = None
def _fit(self, dataset):
self.dataset_index = dataset.index
model = MockModel()
self._copyValues(model)
return model
class MockModel(MockTransformer, Model, HasFake):
pass
class PipelineTests(PySparkTestCase):
def test_pipeline(self):
dataset = MockDataset()
estimator0 = MockEstimator()
transformer1 = MockTransformer()
estimator2 = MockEstimator()
transformer3 = MockTransformer()
pipeline = Pipeline(stages=[estimator0, transformer1, estimator2, transformer3])
pipeline_model = pipeline.fit(dataset, {estimator0.fake: 0, transformer1.fake: 1})
model0, transformer1, model2, transformer3 = pipeline_model.stages
self.assertEqual(0, model0.dataset_index)
self.assertEqual(0, model0.getFake())
self.assertEqual(1, transformer1.dataset_index)
self.assertEqual(1, transformer1.getFake())
self.assertEqual(2, dataset.index)
self.assertIsNone(model2.dataset_index, "The last model shouldn't be called in fit.")
self.assertIsNone(transformer3.dataset_index,
"The last transformer shouldn't be called in fit.")
dataset = pipeline_model.transform(dataset)
self.assertEqual(2, model0.dataset_index)
self.assertEqual(3, transformer1.dataset_index)
self.assertEqual(4, model2.dataset_index)
self.assertEqual(5, transformer3.dataset_index)
self.assertEqual(6, dataset.index)
class TestParams(HasMaxIter, HasInputCol):
"""
A subclass of Params mixed with HasMaxIter and HasInputCol.
"""
def __init__(self):
super(TestParams, self).__init__()
self._setDefault(maxIter=10)
class ParamTests(PySparkTestCase):
def test_param(self):
testParams = TestParams()
maxIter = testParams.maxIter
self.assertEqual(maxIter.name, "maxIter")
self.assertEqual(maxIter.doc, "max number of iterations (>= 0)")
self.assertTrue(maxIter.parent == testParams.uid)
def test_params(self):
testParams = TestParams()
maxIter = testParams.maxIter
inputCol = testParams.inputCol
params = testParams.params
self.assertEqual(params, [inputCol, maxIter])
self.assertTrue(testParams.hasParam(maxIter))
self.assertTrue(testParams.hasDefault(maxIter))
self.assertFalse(testParams.isSet(maxIter))
self.assertTrue(testParams.isDefined(maxIter))
self.assertEqual(testParams.getMaxIter(), 10)
testParams.setMaxIter(100)
self.assertTrue(testParams.isSet(maxIter))
self.assertEquals(testParams.getMaxIter(), 100)
self.assertTrue(testParams.hasParam(inputCol))
self.assertFalse(testParams.hasDefault(inputCol))
self.assertFalse(testParams.isSet(inputCol))
self.assertFalse(testParams.isDefined(inputCol))
with self.assertRaises(KeyError):
testParams.getInputCol()
self.assertEquals(
testParams.explainParams(),
"\n".join(["inputCol: input column name (undefined)",
"maxIter: max number of iterations (>= 0) (default: 10, current: 100)"]))
class FeatureTests(PySparkTestCase):
def test_binarizer(self):
b0 = Binarizer()
self.assertListEqual(b0.params, [b0.inputCol, b0.outputCol, b0.threshold])
self.assertTrue(all([~b0.isSet(p) for p in b0.params]))
self.assertTrue(b0.hasDefault(b0.threshold))
self.assertEqual(b0.getThreshold(), 0.0)
b0.setParams(inputCol="input", outputCol="output").setThreshold(1.0)
self.assertTrue(all([b0.isSet(p) for p in b0.params]))
self.assertEqual(b0.getThreshold(), 1.0)
self.assertEqual(b0.getInputCol(), "input")
self.assertEqual(b0.getOutputCol(), "output")
b0c = b0.copy({b0.threshold: 2.0})
self.assertEqual(b0c.uid, b0.uid)
self.assertListEqual(b0c.params, b0.params)
self.assertEqual(b0c.getThreshold(), 2.0)
b1 = Binarizer(threshold=2.0, inputCol="input", outputCol="output")
self.assertNotEqual(b1.uid, b0.uid)
self.assertEqual(b1.getThreshold(), 2.0)
self.assertEqual(b1.getInputCol(), "input")
self.assertEqual(b1.getOutputCol(), "output")
def test_idf(self):
sqlContext = SQLContext(self.sc)
dataset = sqlContext.createDataFrame([
(DenseVector([1.0, 2.0]),),
(DenseVector([0.0, 1.0]),),
(DenseVector([3.0, 0.2]),)], ["tf"])
idf0 = IDF(inputCol="tf")
self.assertListEqual(idf0.params, [idf0.inputCol, idf0.minDocFreq, idf0.outputCol])
idf0m = idf0.fit(dataset, {idf0.outputCol: "idf"})
self.assertEqual(idf0m.uid, idf0.uid,
"Model should inherit the UID from its parent estimator.")
output = idf0m.transform(dataset)
self.assertIsNotNone(output.head().idf)
if __name__ == "__main__":
unittest.main()