spark-instrumented-optimizer/sql
Matei Zaharia e966284409 SPARK-2045 Sort-based shuffle
This adds a new ShuffleManager based on sorting, as described in https://issues.apache.org/jira/browse/SPARK-2045. The bulk of the code is in an ExternalSorter class that is similar to ExternalAppendOnlyMap, but sorts key-value pairs by partition ID and can be used to create a single sorted file with a map task's output. (Longer-term I think this can take on the remaining functionality in ExternalAppendOnlyMap and replace it so we don't have code duplication.)

The main TODOs still left are:
- [x] enabling ExternalSorter to merge across spilled files
  - [x] with an Ordering
  - [x] without an Ordering, using the keys' hash codes
- [x] adding more tests (e.g. a version of our shuffle suite that runs on this)
- [x] rebasing on top of the size-tracking refactoring in #1165 when that is merged
- [x] disabling spilling if spark.shuffle.spill is set to false

Despite this though, this seems to work pretty well (running successfully in cases where the hash shuffle would OOM, such as 1000 reduce tasks on executors with only 1G memory), and it seems to be comparable in speed or faster than hash-based shuffle (it will create much fewer files for the OS to keep track of). So I'm posting it to get some early feedback.

After these TODOs are done, I'd also like to enable ExternalSorter to sort data within each partition by a key as well, which will allow us to use it to implement external spilling in reduce tasks in `sortByKey`.

Author: Matei Zaharia <matei@databricks.com>

Closes #1499 from mateiz/sort-based-shuffle and squashes the following commits:

bd841f9 [Matei Zaharia] Various review comments
d1c137fd [Matei Zaharia] Various review comments
a611159 [Matei Zaharia] Compile fixes due to rebase
62c56c8 [Matei Zaharia] Fix ShuffledRDD sometimes not returning Tuple2s.
f617432 [Matei Zaharia] Fix a failing test (seems to be due to change in SizeTracker logic)
9464d5f [Matei Zaharia] Simplify code and fix conflicts after latest rebase
0174149 [Matei Zaharia] Add cleanup behavior and cleanup tests for sort-based shuffle
eb4ee0d [Matei Zaharia] Remove customizable element type in ShuffledRDD
fa2e8db [Matei Zaharia] Allow nextBatchStream to be called after we're done looking at all streams
a34b352 [Matei Zaharia] Fix tracking of indices within a partition in SpillReader, and add test
03e1006 [Matei Zaharia] Add a SortShuffleSuite that runs ShuffleSuite with sort-based shuffle
3c7ff1f [Matei Zaharia] Obey the spark.shuffle.spill setting in ExternalSorter
ad65fbd [Matei Zaharia] Rebase on top of Aaron's Sorter change, and use Sorter in our buffer
44d2a93 [Matei Zaharia] Use estimateSize instead of atGrowThreshold to test collection sizes
5686f71 [Matei Zaharia] Optimize merging phase for in-memory only data:
5461cbb [Matei Zaharia] Review comments and more tests (e.g. tests with 1 element per partition)
e9ad356 [Matei Zaharia] Update ContextCleanerSuite to make sure shuffle cleanup tests use hash shuffle (since they were written for it)
c72362a [Matei Zaharia] Added bug fix and test for when iterators are empty
de1fb40 [Matei Zaharia] Make trait SizeTrackingCollection private[spark]
4988d16 [Matei Zaharia] tweak
c1b7572 [Matei Zaharia] Small optimization
ba7db7f [Matei Zaharia] Handle null keys in hash-based comparator, and add tests for collisions
ef4e397 [Matei Zaharia] Support for partial aggregation even without an Ordering
4b7a5ce [Matei Zaharia] More tests, and ability to sort data if a total ordering is given
e1f84be [Matei Zaharia] Fix disk block manager test
5a40a1c [Matei Zaharia] More tests
614f1b4 [Matei Zaharia] Add spill metrics to map tasks
cc52caf [Matei Zaharia] Add more error handling and tests for error cases
bbf359d [Matei Zaharia] More work
3a56341 [Matei Zaharia] More partial work towards sort-based shuffle
7a0895d [Matei Zaharia] Some more partial work towards sort-based shuffle
b615476 [Matei Zaharia] Scaffolding for sort-based shuffle
2014-07-30 18:07:59 -07:00
..
catalyst [SPARK-2179][SQL] Public API for DataTypes and Schema 2014-07-30 00:15:31 -07:00
core SPARK-2045 Sort-based shuffle 2014-07-30 18:07:59 -07:00
hive [SPARK-2734][SQL] Remove tables from cache when DROP TABLE is run. 2014-07-30 17:30:51 -07:00
hive-thriftserver [SPARK-2410][SQL] Merging Hive Thrift/JDBC server (with Maven profile fix) 2014-07-28 12:07:30 -07:00
README.md [SPARK-1342] Scala 2.10.4 2014-04-01 18:35:50 -07:00

Spark SQL

This module provides support for executing relational queries expressed in either SQL or a LINQ-like Scala DSL.

Spark SQL is broken up into three subprojects:

  • Catalyst (sql/catalyst) - An implementation-agnostic framework for manipulating trees of relational operators and expressions.
  • Execution (sql/core) - A query planner / execution engine for translating Catalysts logical query plans into Spark RDDs. This component also includes a new public interface, SQLContext, that allows users to execute SQL or LINQ statements against existing RDDs and Parquet files.
  • Hive Support (sql/hive) - Includes an extension of SQLContext called HiveContext that allows users to write queries using a subset of HiveQL and access data from a Hive Metastore using Hive SerDes. There are also wrappers that allows users to run queries that include Hive UDFs, UDAFs, and UDTFs.

Other dependencies for developers

In order to create new hive test cases , you will need to set several environmental variables.

export HIVE_HOME="<path to>/hive/build/dist"
export HIVE_DEV_HOME="<path to>/hive/"
export HADOOP_HOME="<path to>/hadoop-1.0.4"

Using the console

An interactive scala console can be invoked by running sbt/sbt hive/console. From here you can execute queries and inspect the various stages of query optimization.

catalyst$ sbt/sbt hive/console

[info] Starting scala interpreter...
import org.apache.spark.sql.catalyst.analysis._
import org.apache.spark.sql.catalyst.dsl._
import org.apache.spark.sql.catalyst.errors._
import org.apache.spark.sql.catalyst.expressions._
import org.apache.spark.sql.catalyst.plans.logical._
import org.apache.spark.sql.catalyst.rules._
import org.apache.spark.sql.catalyst.types._
import org.apache.spark.sql.catalyst.util._
import org.apache.spark.sql.execution
import org.apache.spark.sql.hive._
import org.apache.spark.sql.hive.TestHive._
Welcome to Scala version 2.10.4 (Java HotSpot(TM) 64-Bit Server VM, Java 1.7.0_45).
Type in expressions to have them evaluated.
Type :help for more information.

scala> val query = sql("SELECT * FROM (SELECT * FROM src) a")
query: org.apache.spark.sql.ExecutedQuery =
SELECT * FROM (SELECT * FROM src) a
=== Query Plan ===
Project [key#6:0.0,value#7:0.1]
 HiveTableScan [key#6,value#7], (MetastoreRelation default, src, None), None

Query results are RDDs and can be operated as such.

scala> query.collect()
res8: Array[org.apache.spark.sql.execution.Row] = Array([238,val_238], [86,val_86], [311,val_311]...

You can also build further queries on top of these RDDs using the query DSL.

scala> query.where('key === 100).toRdd.collect()
res11: Array[org.apache.spark.sql.execution.Row] = Array([100,val_100], [100,val_100])

From the console you can even write rules that transform query plans. For example, the above query has redundant project operators that aren't doing anything. This redundancy can be eliminated using the transform function that is available on all TreeNode objects.

scala> query.logicalPlan
res1: catalyst.plans.logical.LogicalPlan = 
Project {key#0,value#1}
 Project {key#0,value#1}
  MetastoreRelation default, src, None


scala> query.logicalPlan transform {
     |   case Project(projectList, child) if projectList == child.output => child
     | }
res2: catalyst.plans.logical.LogicalPlan = 
Project {key#0,value#1}
 MetastoreRelation default, src, None