spark-instrumented-optimizer/R/pkg/tests/run-all.R
Shivaram Venkataraman 1219d7a434 [SPARK-22889][SPARKR] Set overwrite=T when install SparkR in tests
## What changes were proposed in this pull request?

Since all CRAN checks go through the same machine, if there is an older partial download or partial install of Spark left behind the tests fail. This PR overwrites the install files when running tests. This shouldn't affect Jenkins as `SPARK_HOME` is set when running Jenkins tests.

## How was this patch tested?

Test manually by running `R CMD check --as-cran`

Author: Shivaram Venkataraman <shivaram@cs.berkeley.edu>

Closes #20060 from shivaram/sparkr-overwrite-cran.
2017-12-23 10:27:14 -08:00

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2.5 KiB
R

#
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library(testthat)
library(SparkR)
# Turn all warnings into errors
options("warn" = 2)
if (.Platform$OS.type == "windows") {
Sys.setenv(TZ = "GMT")
}
# Setup global test environment
# Install Spark first to set SPARK_HOME
# NOTE(shivaram): We set overwrite to handle any old tar.gz files or directories left behind on
# CRAN machines. For Jenkins we should already have SPARK_HOME set.
install.spark(overwrite = TRUE)
sparkRDir <- file.path(Sys.getenv("SPARK_HOME"), "R")
sparkRWhitelistSQLDirs <- c("spark-warehouse", "metastore_db")
invisible(lapply(sparkRWhitelistSQLDirs,
function(x) { unlink(file.path(sparkRDir, x), recursive = TRUE, force = TRUE)}))
sparkRFilesBefore <- list.files(path = sparkRDir, all.files = TRUE)
sparkRTestMaster <- "local[1]"
sparkRTestConfig <- list()
if (identical(Sys.getenv("NOT_CRAN"), "true")) {
sparkRTestMaster <- ""
} else {
# Disable hsperfdata on CRAN
old_java_opt <- Sys.getenv("_JAVA_OPTIONS")
Sys.setenv("_JAVA_OPTIONS" = paste("-XX:-UsePerfData", old_java_opt))
tmpDir <- tempdir()
tmpArg <- paste0("-Djava.io.tmpdir=", tmpDir)
sparkRTestConfig <- list(spark.driver.extraJavaOptions = tmpArg,
spark.executor.extraJavaOptions = tmpArg)
}
test_package("SparkR")
if (identical(Sys.getenv("NOT_CRAN"), "true")) {
# set random seed for predictable results. mostly for base's sample() in tree and classification
set.seed(42)
# for testthat 1.0.2 later, change reporter from "summary" to default_reporter()
testthat:::run_tests("SparkR",
file.path(sparkRDir, "pkg", "tests", "fulltests"),
NULL,
"summary")
}
SparkR:::uninstallDownloadedSpark()