Apache Spark - A unified analytics engine for large-scale data processing
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Kent Yao f4c73b7c68 [SPARK-27301][DSTREAM] Shorten the FileSystem cached life cycle to the cleanup method inner scope
## What changes were proposed in this pull request?

The cached FileSystem's token will expire if no tokens explicitly are add into it.

```scala
19/03/28 13:40:16 INFO storage.BlockManager: Removing RDD 83189
19/03/28 13:40:16 INFO rdd.MapPartitionsRDD: Removing RDD 82860 from persistence list
19/03/28 13:40:16 INFO spark.ContextCleaner: Cleaned shuffle 6005
19/03/28 13:40:16 INFO storage.BlockManager: Removing RDD 82860
19/03/28 13:40:16 INFO scheduler.ReceivedBlockTracker: Deleting batches:
19/03/28 13:40:16 INFO scheduler.InputInfoTracker: remove old batch metadata: 1553750250000 ms
19/03/28 13:40:17 WARN security.UserGroupInformation: PriviledgedActionException as:ursHADOOP.HZ.NETEASE.COM (auth:KERBEROS) cause:org.apache.hadoop.ipc.RemoteException(org.apache.hadoop.security.token.SecretManager$InvalidToken): token (HDFS_DELEGATION_TOKEN token 53240500 for urs) is expired, current time: 2019-03-28 13:40:17,010+0800 expected renewal time: 2019-03-28 13:39:48,523+0800
19/03/28 13:40:17 WARN ipc.Client: Exception encountered while connecting to the server : org.apache.hadoop.ipc.RemoteException(org.apache.hadoop.security.token.SecretManager$InvalidToken): token (HDFS_DELEGATION_TOKEN token 53240500 for urs) is expired, current time: 2019-03-28 13:40:17,010+0800 expected renewal time: 2019-03-28 13:39:48,523+0800
19/03/28 13:40:17 WARN security.UserGroupInformation: PriviledgedActionException as:ursHADOOP.HZ.NETEASE.COM (auth:KERBEROS) cause:org.apache.hadoop.ipc.RemoteException(org.apache.hadoop.security.token.SecretManager$InvalidToken): token (HDFS_DELEGATION_TOKEN token 53240500 for urs) is expired, current time: 2019-03-28 13:40:17,010+0800 expected renewal time: 2019-03-28 13:39:48,523+0800
19/03/28 13:40:17 WARN hdfs.LeaseRenewer: Failed to renew lease for [DFSClient_NONMAPREDUCE_-1396157959_1] for 53 seconds. Will retry shortly ...
org.apache.hadoop.ipc.RemoteException(org.apache.hadoop.security.token.SecretManager$InvalidToken): token (HDFS_DELEGATION_TOKEN token 53240500 for urs) is expired, current time: 2019-03-28 13:40:17,010+0800 expected renewal time: 2019-03-28 13:39:48,523+0800
at org.apache.hadoop.ipc.Client.call(Client.java:1468)
at org.apache.hadoop.ipc.Client.call(Client.java:1399)
at org.apache.hadoop.ipc.ProtobufRpcEngine$Invoker.invoke(ProtobufRpcEngine.java:232)
at com.sun.proxy.$Proxy11.renewLease(Unknown Source)
at org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.renewLease(ClientNamenodeProtocolTranslatorPB.java:571)
at sun.reflect.GeneratedMethodAccessor40.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:187)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy12.renewLease(Unknown Source)
at org.apache.hadoop.hdfs.DFSClient.renewLease(DFSClient.java:878)
at org.apache.hadoop.hdfs.LeaseRenewer.renew(LeaseRenewer.java:417)
at org.apache.hadoop.hdfs.LeaseRenewer.run(LeaseRenewer.java:442)
at org.apache.hadoop.hdfs.LeaseRenewer.access$700(LeaseRenewer.java:71)
at org.apache.hadoop.hdfs.LeaseRenewer$1.run(LeaseRenewer.java:298)
at java.lang.Thread.run(Thread.java:748)
```

This PR shorten the FileSystem cached life cycle to the cleanup method inner scope in case of token expiry.

## How was this patch tested?

existing ut

Closes #24235 from yaooqinn/SPARK-27301.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2019-03-30 02:35:49 -05:00
.github [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
assembly [SPARK-26134][CORE] Upgrading Hadoop to 2.7.4 to fix java.version problem 2018-11-21 23:09:57 -08:00
bin [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
build [SPARK-26144][BUILD] build/mvn should detect scala.version based on scala.binary.version 2018-11-22 14:49:41 -08:00
common [SPARK-27275][CORE] Fix potential corruption in EncryptedMessage.transferTo 2019-03-26 15:48:29 -07:00
conf [SPARK-26890][DOC] Add list of available Dropwizard metrics in Spark and add additional configuration details to the monitoring documentation 2019-02-27 10:07:15 -06:00
core [SPARK-27244][CORE] Redact Passwords While Using Option logConf=true 2019-03-29 14:16:53 -05:00
data [SPARK-22666][ML][SQL] Spark datasource for image format 2018-09-05 11:59:00 -07:00
dev [SPARK-27277][INFRA] Recover from setting fix version failure in merge script 2019-03-26 21:14:07 +09:00
docs [SPARK-27252][SQL] Make current_date() independent from time zones 2019-03-28 18:44:08 -07:00
examples [SPARK-24902][K8S] Add PV integration tests 2019-03-27 13:00:56 -07:00
external [SPARK-27155][TEST] Parameterize Oracle docker image name 2019-03-25 15:17:41 -05:00
graphx [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
hadoop-cloud [SPARK-27175][BUILD] Upgrade hadoop-3 to 3.2.0 2019-03-16 19:42:05 -05:00
launcher [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
licenses [SPARK-24654][BUILD] Update, fix LICENSE and NOTICE, and specialize for source vs binary 2018-06-30 19:27:16 -05:00
licenses-binary [SPARK-26986][ML][FOLLOWUP] Add JAXB reference impl to build for Java 9+ 2019-03-01 11:23:40 -06:00
mllib [SPARK-24102][ML][MLLIB][PYSPARK][FOLLOWUP] Added weight column to pyspark API for regression evaluator and metrics 2019-03-26 09:06:04 -05:00
mllib-local [SPARK-19591][ML][MLLIB] Add sample weights to decision trees 2019-01-24 18:20:28 -07:00
project [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
python [SPARK-24102][ML][MLLIB][PYSPARK][FOLLOWUP] Added weight column to pyspark API for regression evaluator and metrics 2019-03-26 09:06:04 -05:00
R [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
repl [SPARK-27121][REPL] Resolve Scala compiler failure for Java 9+ in REPL 2019-03-30 02:30:34 -05:00
resource-managers [SPARK-24902][K8S] Add PV integration tests 2019-03-27 13:00:56 -07:00
sbin [SPARK-27056][MESOS] Remove start-shuffle-service.sh 2019-03-08 18:51:38 -06:00
sql [SPARK-27320][SQL] Replacing index with iterator to traverse the expressions list in AggregationIterator, which make it simpler 2019-03-30 02:27:12 -05:00
streaming [SPARK-27301][DSTREAM] Shorten the FileSystem cached life cycle to the cleanup method inner scope 2019-03-30 02:35:49 -05:00
tools [SPARK-25956] Make Scala 2.12 as default Scala version in Spark 3.0 2018-11-14 16:22:23 -08:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [MINOR][DOC] Documentation on JVM options for SBT 2019-01-22 18:27:24 -06:00
appveyor.yml [MINOR][BUILD] Remove -Phive-thriftserver profile within appveyor.yml 2018-07-30 10:01:18 +08:00
CONTRIBUTING.md [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
LICENSE [SPARK-24654][BUILD] Update, fix LICENSE and NOTICE, and specialize for source vs binary 2018-06-30 19:27:16 -05:00
LICENSE-binary [SPARK-27054][BUILD][SQL] Remove the Calcite dependency 2019-03-09 16:34:24 -08:00
NOTICE [SPARK-23654][BUILD] remove jets3t as a dependency of spark 2018-08-16 12:34:23 -07:00
NOTICE-binary [SPARK-27054][BUILD][SQL] Remove the Calcite dependency 2019-03-09 16:34:24 -08:00
pom.xml [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
README.md [SPARK-7721][INFRA] Run and generate test coverage report from Python via Jenkins 2019-02-01 10:18:08 +08:00
scalastyle-config.xml [SPARK-25986][BUILD] Add rules to ban throw Errors in application code 2018-11-14 13:05:18 -08:00

Apache Spark

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Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

You can build Spark using more than one thread by using the -T option with Maven, see "Parallel builds in Maven 3". More detailed documentation is available from the project site, at "Building Spark".

For general development tips, including info on developing Spark using an IDE, see "Useful Developer Tools".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

There is also a Kubernetes integration test, see resource-managers/kubernetes/integration-tests/README.md

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version and Enabling YARN" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

Contributing

Please review the Contribution to Spark guide for information on how to get started contributing to the project.