Apache Spark - A unified analytics engine for large-scale data processing
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Bryan Cutler f62f44f2a2 [SPARK-27387][PYTHON][TESTS] Replace sqlutils.assertPandasEqual with Pandas assert_frame_equals
## What changes were proposed in this pull request?

Running PySpark tests with Pandas 0.24.x causes a failure in `test_pandas_udf_grouped_map` test_supported_types:
`ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all()`

This is because a column is an ArrayType and the method `sqlutils ReusedSQLTestCase.assertPandasEqual ` does not properly check this.

This PR removes `assertPandasEqual` and replaces it with the built-in `pandas.util.testing.assert_frame_equal` which can properly handle columns of ArrayType and also prints out better diff between the DataFrames when an error occurs.

Additionally, imports of pandas and pyarrow were moved to the top of related test files to avoid duplicating the same import many times.

## How was this patch tested?

Existing tests

Closes #24306 from BryanCutler/python-pandas-assert_frame_equal-SPARK-27387.

Authored-by: Bryan Cutler <cutlerb@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2019-04-10 07:50:25 +09:00
.github [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
assembly [SPARK-26134][CORE] Upgrading Hadoop to 2.7.4 to fix java.version problem 2018-11-21 23:09:57 -08:00
bin [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
build [SPARK-26144][BUILD] build/mvn should detect scala.version based on scala.binary.version 2018-11-22 14:49:41 -08:00
common [SPARK-27275][CORE] Fix potential corruption in EncryptedMessage.transferTo 2019-03-26 15:48:29 -07:00
conf [SPARK-26890][DOC] Add list of available Dropwizard metrics in Spark and add additional configuration details to the monitoring documentation 2019-02-27 10:07:15 -06:00
core [SPARK-27394][WEBUI] Flush LiveEntity if necessary when receiving SparkListenerExecutorMetricsUpdate 2019-04-09 08:26:00 -07:00
data [SPARK-22666][ML][SQL] Spark datasource for image format 2018-09-05 11:59:00 -07:00
dev [SPARK-27176][SQL] Upgrade hadoop-3's built-in Hive maven dependencies to 2.3.4 2019-04-08 08:42:21 -07:00
docs [SPARK-27394][WEBUI] Flush LiveEntity if necessary when receiving SparkListenerExecutorMetricsUpdate 2019-04-09 08:26:00 -07:00
examples [SPARK-24902][K8S] Add PV integration tests 2019-03-27 13:00:56 -07:00
external [SPARK-27399][STREAMING][KAFKA] Arrange scattered config and reduce hardcode for kafka 10. 2019-04-06 18:05:15 -05:00
graphx [SPARK-27323][CORE][SQL][STREAMING] Use Single-Abstract-Method support in Scala 2.12 to simplify code 2019-04-02 07:37:05 -07:00
hadoop-cloud [SPARK-27175][BUILD] Upgrade hadoop-3 to 3.2.0 2019-03-16 19:42:05 -05:00
launcher [SPARK-26132][BUILD][CORE] Remove support for Scala 2.11 in Spark 3.0.0 2019-03-25 10:46:42 -05:00
licenses [SPARK-27358][UI] Update jquery to 1.12.x to pick up security fixes 2019-04-05 12:54:01 -05:00
licenses-binary [SPARK-27358][UI] Update jquery to 1.12.x to pick up security fixes 2019-04-05 12:54:01 -05:00
mllib [SPARK-26881][MLLIB] Heuristic for tree aggregate depth 2019-04-08 20:56:53 -05:00
mllib-local [SPARK-19591][ML][MLLIB] Add sample weights to decision trees 2019-01-24 18:20:28 -07:00
project [MINOR][BUILD] Add ASF license header to plugins.sbt 2019-03-30 12:47:02 -05:00
python [SPARK-27387][PYTHON][TESTS] Replace sqlutils.assertPandasEqual with Pandas assert_frame_equals 2019-04-10 07:50:25 +09:00
R [SPARK-25496][SQL] Deprecate from_utc_timestamp and to_utc_timestamp 2019-04-03 10:55:56 +08:00
repl [SPARK-27323][CORE][SQL][STREAMING] Use Single-Abstract-Method support in Scala 2.12 to simplify code 2019-04-02 07:37:05 -07:00
resource-managers [SPARK-13704][CORE][YARN] Reduce rack resolution time 2019-04-08 10:47:06 -05:00
sbin [SPARK-27056][MESOS] Remove start-shuffle-service.sh 2019-03-08 18:51:38 -06:00
sql [SPARK-27401][SQL] Refactoring conversion of Timestamp to/from java.sql.Timestamp 2019-04-09 15:42:27 -07:00
streaming [MINOR][DSTREAMS] Add DStreamCheckpointData.cleanup warning if delete returns false 2019-04-02 18:34:40 -05:00
tools [SPARK-25956] Make Scala 2.12 as default Scala version in Spark 3.0 2018-11-14 16:22:23 -08:00
.gitattributes [SPARK-3870] EOL character enforcement 2014-10-31 12:39:52 -07:00
.gitignore [MINOR][DOC] Documentation on JVM options for SBT 2019-01-22 18:27:24 -06:00
appveyor.yml [MINOR][BUILD] Remove -Phive-thriftserver profile within appveyor.yml 2018-07-30 10:01:18 +08:00
CONTRIBUTING.md [SPARK-18073][DOCS][WIP] Migrate wiki to spark.apache.org web site 2016-11-23 11:25:47 +00:00
LICENSE [SPARK-24654][BUILD] Update, fix LICENSE and NOTICE, and specialize for source vs binary 2018-06-30 19:27:16 -05:00
LICENSE-binary [MINOR] Update the scala version of LICENSE-binary to 2.12 2019-03-30 12:46:08 -05:00
NOTICE [SPARK-23654][BUILD] remove jets3t as a dependency of spark 2018-08-16 12:34:23 -07:00
NOTICE-binary [SPARK-27054][BUILD][SQL] Remove the Calcite dependency 2019-03-09 16:34:24 -08:00
pom.xml [SPARK-27176][SQL] Upgrade hadoop-3's built-in Hive maven dependencies to 2.3.4 2019-04-08 08:42:21 -07:00
README.md [SPARK-7721][INFRA] Run and generate test coverage report from Python via Jenkins 2019-02-01 10:18:08 +08:00
scalastyle-config.xml [SPARK-25986][BUILD] Add rules to ban throw Errors in application code 2018-11-14 13:05:18 -08:00

Apache Spark

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Spark is a fast and general cluster computing system for Big Data. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Spark Streaming for stream processing.

http://spark.apache.org/

Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

You can build Spark using more than one thread by using the -T option with Maven, see "Parallel builds in Maven 3". More detailed documentation is available from the project site, at "Building Spark".

For general development tips, including info on developing Spark using an IDE, see "Useful Developer Tools".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1000:

scala> sc.parallelize(1 to 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1000:

>>> sc.parallelize(range(1000)).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

There is also a Kubernetes integration test, see resource-managers/kubernetes/integration-tests/README.md

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version and Enabling YARN" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

Contributing

Please review the Contribution to Spark guide for information on how to get started contributing to the project.