spark-instrumented-optimizer/dev/run-tests
Davies Liu 04e44b37cc [SPARK-4897] [PySpark] Python 3 support
This PR update PySpark to support Python 3 (tested with 3.4).

Known issue: unpickle array from Pyrolite is broken in Python 3, those tests are skipped.

TODO: ec2/spark-ec2.py is not fully tested with python3.

Author: Davies Liu <davies@databricks.com>
Author: twneale <twneale@gmail.com>
Author: Josh Rosen <joshrosen@databricks.com>

Closes #5173 from davies/python3 and squashes the following commits:

d7d6323 [Davies Liu] fix tests
6c52a98 [Davies Liu] fix mllib test
99e334f [Davies Liu] update timeout
b716610 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
cafd5ec [Davies Liu] adddress comments from @mengxr
bf225d7 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
179fc8d [Davies Liu] tuning flaky tests
8c8b957 [Davies Liu] fix ResourceWarning in Python 3
5c57c95 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
4006829 [Davies Liu] fix test
2fc0066 [Davies Liu] add python3 path
71535e9 [Davies Liu] fix xrange and divide
5a55ab4 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
125f12c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
ed498c8 [Davies Liu] fix compatibility with python 3
820e649 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
e8ce8c9 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
ad7c374 [Davies Liu] fix mllib test and warning
ef1fc2f [Davies Liu] fix tests
4eee14a [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
20112ff [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
59bb492 [Davies Liu] fix tests
1da268c [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
ca0fdd3 [Davies Liu] fix code style
9563a15 [Davies Liu] add imap back for python 2
0b1ec04 [Davies Liu] make python examples work with Python 3
d2fd566 [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
a716d34 [Davies Liu] test with python 3.4
f1700e8 [Davies Liu] fix test in python3
671b1db [Davies Liu] fix test in python3
692ff47 [Davies Liu] fix flaky test
7b9699f [Davies Liu] invalidate import cache for Python 3.3+
9c58497 [Davies Liu] fix kill worker
309bfbf [Davies Liu] keep compatibility
5707476 [Davies Liu] cleanup, fix hash of string in 3.3+
8662d5b [Davies Liu] Merge branch 'master' of github.com:apache/spark into python3
f53e1f0 [Davies Liu] fix tests
70b6b73 [Davies Liu] compile ec2/spark_ec2.py in python 3
a39167e [Davies Liu] support customize class in __main__
814c77b [Davies Liu] run unittests with python 3
7f4476e [Davies Liu] mllib tests passed
d737924 [Davies Liu] pass ml tests
375ea17 [Davies Liu] SQL tests pass
6cc42a9 [Davies Liu] rename
431a8de [Davies Liu] streaming tests pass
78901a7 [Davies Liu] fix hash of serializer in Python 3
24b2f2e [Davies Liu] pass all RDD tests
35f48fe [Davies Liu] run future again
1eebac2 [Davies Liu] fix conflict in ec2/spark_ec2.py
6e3c21d [Davies Liu] make cloudpickle work with Python3
2fb2db3 [Josh Rosen] Guard more changes behind sys.version; still doesn't run
1aa5e8f [twneale] Turned out `pickle.DictionaryType is dict` == True, so swapped it out
7354371 [twneale] buffer --> memoryview  I'm not super sure if this a valid change, but the 2.7 docs recommend using memoryview over buffer where possible, so hoping it'll work.
b69ccdf [twneale] Uses the pure python pickle._Pickler instead of c-extension _pickle.Pickler. It appears pyspark 2.7 uses the pure python pickler as well, so this shouldn't degrade pickling performance (?).
f40d925 [twneale] xrange --> range
e104215 [twneale] Replaces 2.7 types.InstsanceType with 3.4 `object`....could be horribly wrong depending on how types.InstanceType is used elsewhere in the package--see http://bugs.python.org/issue8206
79de9d0 [twneale] Replaces python2.7 `file` with 3.4 _io.TextIOWrapper
2adb42d [Josh Rosen] Fix up some import differences between Python 2 and 3
854be27 [Josh Rosen] Run `futurize` on Python code:
7c5b4ce [Josh Rosen] Remove Python 3 check in shell.py.
2015-04-16 16:20:57 -07:00

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#!/usr/bin/env bash
#
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under the Apache License, Version 2.0
# (the "License"); you may not use this file except in compliance with
# the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# Go to the Spark project root directory
FWDIR="$(cd "`dirname $0`"/..; pwd)"
cd "$FWDIR"
# Clean up work directory and caches
rm -rf ./work
rm -rf ~/.ivy2/local/org.apache.spark
rm -rf ~/.ivy2/cache/org.apache.spark
source "$FWDIR/dev/run-tests-codes.sh"
CURRENT_BLOCK=$BLOCK_GENERAL
function handle_error () {
echo "[error] Got a return code of $? on line $1 of the run-tests script."
exit $CURRENT_BLOCK
}
# Build against the right version of Hadoop.
{
if [ -n "$AMPLAB_JENKINS_BUILD_PROFILE" ]; then
if [ "$AMPLAB_JENKINS_BUILD_PROFILE" = "hadoop1.0" ]; then
export SBT_MAVEN_PROFILES_ARGS="-Dhadoop.version=1.0.4"
elif [ "$AMPLAB_JENKINS_BUILD_PROFILE" = "hadoop2.0" ]; then
export SBT_MAVEN_PROFILES_ARGS="-Dhadoop.version=2.0.0-mr1-cdh4.1.1"
elif [ "$AMPLAB_JENKINS_BUILD_PROFILE" = "hadoop2.2" ]; then
export SBT_MAVEN_PROFILES_ARGS="-Pyarn -Phadoop-2.2 -Dhadoop.version=2.2.0"
elif [ "$AMPLAB_JENKINS_BUILD_PROFILE" = "hadoop2.3" ]; then
export SBT_MAVEN_PROFILES_ARGS="-Pyarn -Phadoop-2.3 -Dhadoop.version=2.3.0"
fi
fi
if [ -z "$SBT_MAVEN_PROFILES_ARGS" ]; then
export SBT_MAVEN_PROFILES_ARGS="-Pyarn -Phadoop-2.3 -Dhadoop.version=2.3.0"
fi
}
export SBT_MAVEN_PROFILES_ARGS="$SBT_MAVEN_PROFILES_ARGS -Pkinesis-asl"
# Determine Java path and version.
{
if test -x "$JAVA_HOME/bin/java"; then
declare java_cmd="$JAVA_HOME/bin/java"
else
declare java_cmd=java
fi
# We can't use sed -r -e due to OS X / BSD compatibility; hence, all the parentheses.
JAVA_VERSION=$(
$java_cmd -version 2>&1 \
| grep -e "^java version" --max-count=1 \
| sed "s/java version \"\(.*\)\.\(.*\)\.\(.*\)\"/\1\2/"
)
if [ "$JAVA_VERSION" -lt 18 ]; then
echo "[warn] Java 8 tests will not run because JDK version is < 1.8."
fi
}
# Only run Hive tests if there are SQL changes.
# Partial solution for SPARK-1455.
if [ -n "$AMPLAB_JENKINS" ]; then
git fetch origin master:master
sql_diffs=$(
git diff --name-only master \
| grep -e "^sql/" -e "^bin/spark-sql" -e "^sbin/start-thriftserver.sh"
)
non_sql_diffs=$(
git diff --name-only master \
| grep -v -e "^sql/" -e "^bin/spark-sql" -e "^sbin/start-thriftserver.sh"
)
if [ -n "$sql_diffs" ]; then
echo "[info] Detected changes in SQL. Will run Hive test suite."
_RUN_SQL_TESTS=true
if [ -z "$non_sql_diffs" ]; then
echo "[info] Detected no changes except in SQL. Will only run SQL tests."
_SQL_TESTS_ONLY=true
fi
fi
fi
set -o pipefail
trap 'handle_error $LINENO' ERR
echo ""
echo "========================================================================="
echo "Running Apache RAT checks"
echo "========================================================================="
CURRENT_BLOCK=$BLOCK_RAT
./dev/check-license
echo ""
echo "========================================================================="
echo "Running Scala style checks"
echo "========================================================================="
CURRENT_BLOCK=$BLOCK_SCALA_STYLE
./dev/lint-scala
echo ""
echo "========================================================================="
echo "Running Python style checks"
echo "========================================================================="
CURRENT_BLOCK=$BLOCK_PYTHON_STYLE
./dev/lint-python
echo ""
echo "========================================================================="
echo "Building Spark"
echo "========================================================================="
CURRENT_BLOCK=$BLOCK_BUILD
{
HIVE_BUILD_ARGS="$SBT_MAVEN_PROFILES_ARGS -Phive -Phive-thriftserver"
HIVE_12_BUILD_ARGS="$HIVE_BUILD_ARGS -Phive-0.12.0"
# First build with Hive 0.12.0 to ensure patches do not break the Hive 0.12.0 build
echo "[info] Compile with Hive 0.12.0"
[ -d "lib_managed" ] && rm -rf lib_managed
echo "[info] Building Spark with these arguments: $HIVE_12_BUILD_ARGS"
if [ "${AMPLAB_JENKINS_BUILD_TOOL}" == "maven" ]; then
build/mvn $HIVE_12_BUILD_ARGS clean package -DskipTests
else
# NOTE: echo "q" is needed because sbt on encountering a build file with failure
# (either resolution or compilation) prompts the user for input either q, r, etc
# to quit or retry. This echo is there to make it not block.
# NOTE: Do not quote $BUILD_MVN_PROFILE_ARGS or else it will be interpreted as a
# single argument!
# QUESTION: Why doesn't 'yes "q"' work?
# QUESTION: Why doesn't 'grep -v -e "^\[info\] Resolving"' work?
echo -e "q\n" \
| build/sbt $HIVE_12_BUILD_ARGS clean hive/compile hive-thriftserver/compile \
| grep -v -e "info.*Resolving" -e "warn.*Merging" -e "info.*Including"
fi
# Then build with default Hive version (0.13.1) because tests are based on this version
echo "[info] Compile with Hive 0.13.1"
[ -d "lib_managed" ] && rm -rf lib_managed
echo "[info] Building Spark with these arguments: $HIVE_BUILD_ARGS"
if [ "${AMPLAB_JENKINS_BUILD_TOOL}" == "maven" ]; then
build/mvn $HIVE_BUILD_ARGS clean package -DskipTests
else
echo -e "q\n" \
| build/sbt $HIVE_BUILD_ARGS package assembly/assembly streaming-kafka-assembly/assembly \
| grep -v -e "info.*Resolving" -e "warn.*Merging" -e "info.*Including"
fi
}
echo ""
echo "========================================================================="
echo "Detecting binary incompatibilities with MiMa"
echo "========================================================================="
CURRENT_BLOCK=$BLOCK_MIMA
./dev/mima
echo ""
echo "========================================================================="
echo "Running Spark unit tests"
echo "========================================================================="
CURRENT_BLOCK=$BLOCK_SPARK_UNIT_TESTS
{
# If the Spark SQL tests are enabled, run the tests with the Hive profiles enabled.
# This must be a single argument, as it is.
if [ -n "$_RUN_SQL_TESTS" ]; then
SBT_MAVEN_PROFILES_ARGS="$SBT_MAVEN_PROFILES_ARGS -Phive -Phive-thriftserver"
fi
if [ -n "$_SQL_TESTS_ONLY" ]; then
# This must be an array of individual arguments. Otherwise, having one long string
# will be interpreted as a single test, which doesn't work.
SBT_MAVEN_TEST_ARGS=("catalyst/test" "sql/test" "hive/test" "hive-thriftserver/test" "mllib/test")
else
SBT_MAVEN_TEST_ARGS=("test")
fi
echo "[info] Running Spark tests with these arguments: $SBT_MAVEN_PROFILES_ARGS ${SBT_MAVEN_TEST_ARGS[@]}"
if [ "${AMPLAB_JENKINS_BUILD_TOOL}" == "maven" ]; then
build/mvn test $SBT_MAVEN_PROFILES_ARGS --fail-at-end
else
# NOTE: echo "q" is needed because sbt on encountering a build file with failure
# (either resolution or compilation) prompts the user for input either q, r, etc
# to quit or retry. This echo is there to make it not block.
# NOTE: Do not quote $SBT_MAVEN_PROFILES_ARGS or else it will be interpreted as a
# single argument!
# "${SBT_MAVEN_TEST_ARGS[@]}" is cool because it's an array.
# QUESTION: Why doesn't 'yes "q"' work?
# QUESTION: Why doesn't 'grep -v -e "^\[info\] Resolving"' work?
echo -e "q\n" \
| build/sbt $SBT_MAVEN_PROFILES_ARGS "${SBT_MAVEN_TEST_ARGS[@]}" \
| grep -v -e "info.*Resolving" -e "warn.*Merging" -e "info.*Including"
fi
}
echo ""
echo "========================================================================="
echo "Running PySpark tests"
echo "========================================================================="
CURRENT_BLOCK=$BLOCK_PYSPARK_UNIT_TESTS
# add path for python 3 in jenkins
export PATH="${PATH}:/home/anaonda/envs/py3k/bin"
./python/run-tests
echo ""
echo "========================================================================="
echo "Running SparkR tests"
echo "========================================================================="
CURRENT_BLOCK=$BLOCK_SPARKR_UNIT_TESTS
if [ $(command -v R) ]; then
./R/install-dev.sh
./R/run-tests.sh
else
echo "Ignoring SparkR tests as R was not found in PATH"
fi