Website/lib/lab_metadata.rb

module LabMetadata

  @@cnames = {}

  def LabMetadata.build_people_metadata
    $db["lab/members"].each do |name, data|
      data["link_relative"] = not(data.has_key? "link")
      data["name"] = name
      unless data.has_key? "shortname"
        data["shortname"] =
          name.
            downcase.
            gsub(/ /, "_").
            gsub(/[^a-z0-9A-Z_]/, "")
      end
      @@cnames[name] = name
      @@cnames[data["shortname"]] = name
      @@cnames[data["ubit"]] = name if data.has_key? "ubit"
      page = "/people/#{data["shortname"]}.html"
      unless data.has_key? "link"
        data["link"] = page
      end
        data["page"] = page
    end

    $db["lab/alumni"].each do |name, data|
      data["name"] = name      
      @@cnames[name] = name
      @@cnames[data["shortname"]] = name
      @@cnames[data["ubit"]] = name if data.has_key? "ubit"
    end
  end

  def LabMetadata.is_member?(name)
    $db["lab/members"].has_key? name or $db["lab/alumni"].has_key? name
  end

  def LabMetadata.create_people_pages
  	known_pages = 
	  	GemSmith::all_outputs.
	  		delete_if { |x| not /people\/.*\.html$/ =~ x }

    $db["lab/members"].each do |name, data|
    	unless known_pages.include? data["page"]
    		GemSmith::add_file_string(data["page"], "#{name} hasn't written anything about themselves yet.")
    	end
    	GemSmith::metadata_for(data["page"]).merge!({
    		title: name,
    		name: name
  		}.merge(data))
    end
  end

  def LabMetadata.project_link(project)
    data = $db["lab/projects"].fetch(project, {})
    url = data.fetch("url", "/research/#{project}")
    name = data.fetch("name", project.gsub(/[_-]/, " ").capitalize)
    return "<a href=\"#{url}\">#{name}</a>"
  end

  def LabMetadata.data_for(person)
    cname = @@cnames[person] || person
    data = $db["lab/members"][cname]
    if data.nil?
      data = $db["people"][cname]
    end
    data
  end

  def LabMetadata.link_for(person)
    cname = @@cnames[person] || person
  	data = $db["lab/members"][cname]
  	unless data.nil? then
      link = 
        if /^https?:\/\// =~ data["link"] then data["link"] 
        else GemSmith::root_path(data["link"]) end
      "<a class=\"lab_member\" href=\"#{link}\">#{person}</a>" 
    else
      alum = $db["lab/alumni/#{cname}"]
      if alum and alum["link"] then
        "<a class=\"lab_member\" href=\"#{alum["link"]}\">#{person}</a>"
      elsif alum then
        "<span class=\"lab_member\">#{person}</span>"
      else
        person
      end
    end
	end

  def LabMetadata.publications_for(person)
    cname = @@cnames[person]
    raise "Unknown person '#{person}'" if cname.nil?
  	$db["publications"].
  		where { |pub| pub["authors"].include? cname }
  end

  def LabMetadata.shortname_for(publication)
    venue = LabMetadata.complete_venue(publication)
    publication.fetch("shortname", [
        publication["authors"][0].split(/ +/)[-1].downcase,
        publication["year"],
        publication["venue"].nil? ? nil : publication["venue"].downcase.gsub(/[^a-zA-Z0-9\-]/, ""),
        publication["title"].split(/ +/).
          map {|x| x.downcase.gsub(/[^a-zA-Z0-9\-]/, "") }.
          delete_if {|x| ["the", "a"].include? x }[0]
      ].compact.join(":")
    )
  end

  def LabMetadata.bibtex_for(publication)
    venue = LabMetadata.complete_venue(publication)
    authors = publication["authors"].
      map { |author| 
        author = author.split(/ +/)
        last = author.pop
        "#{last}, #{author.join(" ")}"
      }

    type, meta =
    case venue["type"]
      when "workshop", "conference", "demo"
        [ "inproceedings",
          {
            author: authors.join(" and "),
            title: publication["title"],
            booktitle: LabMetadata.venue_name(venue, size: :short),
            year: publication["year"]
          }
        ]
      when "chapter", "book"
        [
          "incollection",
          {
            author: authors.join(" and "),
            title: publication["title"],
            editor: publication["editor"],
            booktitle: publication["booktitle"],
            publisher: venue["publisher"],
            year: publication["year"],
            pages: publication["pages"]
          }
        ]
      when "journal"
        [ "article",
          {
            author: authors.join(" and "),
            title: publication["title"],
            journal: LabMetadata.venue_name(venue, size: :short),
            volume: publication["volume"],
            number: publication["number"],
            year: publication["year"],
            month: publication["month"],
            pages: publication["pages"]
          }
        ]
      when "techreport"
        [ "techreport",
          {
            author: authors.join(" and "),
            title: publication["title"],
            institution: LabMetadata.venue_name(venue, size: :short),
            year: publication["year"]
          }
        ]
      when "patent", "panel"
        [ "misc",
          {
            title: publication["title"],
            author: authors.join(" and "),
            year: publication["year"]
          }
        ]
      when "thesis"
        [
          "#{venue["degree"].downcase}thesis",
          {
            author: authors.join(" and "),
            title: publication["title"],
            school: venue["school"],
            year: publication["year"]
          }
        ]
      when "abstract"
        [ "misc",
          {
            author: authors.join(" and "),
            title: publication["title"],
            howpublished: LabMetadata.venue_name(venue, size: :short),
            year: publication["year"]
          }
        ]
      else 
        raise "Unknown venue type '#{venue["type"]}' for publication '#{publication["title"]}'"
      end

    "@#{type}{#{LabMetadata.shortname_for(publication)},"+(
      meta.delete_if { |k,v| v.nil? }.
           map { |k,v| "\n   #{k} = {#{v}}" }.
           join(",")
    )+"\n}"
  end

  def LabMetadata.members_on_project(project, role = /.*/)
    role = case role
            when :student then /PhD|BS|MS/ 
            else role
           end
    $db["lab/members"].values
      .where { |m| m.fetch("projects", []).include? project }
      .select { |m| role =~ m.fetch("status", "") }
      .map { |m| m["name"] }
  end

  def LabMetadata.alumni_on_project(project)
    $db["lab/alumni"].values.
      where { |m| m.fetch("projects", []).include? project }.
      map { |m| m["name"] }
  end

  def LabMetadata.complete_venue(record)
    v = record["venue"];
    t = record["track"];
    y = record["year"]
    v = $db["venues"][v];
    ## if there is no additional metadata for the venue, we're done.
    return record         if v.nil?;
    ## if there's no request for a subtrack or year, merge with what we have.
    result = 
      if t.nil? then v.clone.merge record
      else
        tracks = v["tracks"] 
        if tracks.nil? then record
        elsif tracks[t].nil? then record
        else tracks[t].clone.merge record
        end 
      end

    if result.has_key? "years" and not y.nil? and result["years"].has_key? y.to_s
      result = result.merge result["years"][y.to_s]
    end

    return result
  end

  def LabMetadata.venue_name(record, args = {})
    v = LabMetadata.complete_venue(record)
    short = v["acronym"] || v["venue"]
    raise "Unknown venue: #{short}" if v.nil?
    raise "Unknown abbreviation: #{v}" if short.nil?
    case args.fetch(:size, :full_parens) 
      when :full_parens then "#{v["fullname"]} (#{short})"
      when :full then v["fullname"]
      when :short then short
    end
  end

  def LabMetadata.venue_selectivity(record, params = {})
    rounding = params.fetch(:rounding, 2)
    year = record["year"].to_s
    v = LabMetadata.complete_venue(record)
    sel_data = v["selectivity"]
    if sel_data.nil?
      "unavailable"
    elsif sel_data["average"].is_a? Numeric
      "approximately #{(sel_data["average"]*100).round(rounding)}%"
    elsif not sel_data["average"].nil?
      sel_data["average"]
    else
      "approximately #{
        (sel_data.keys.
              delete_if { |k| /a-zA-Z/ =~ k }.
              map { |k| sel_data[k].to_f }.
              avg * 100).round(rounding)
      }%"
    end
  end

  def LabMetadata.abbreviate_person(name)
    n = name.split(/ +/)
    last = n.pop
    (n.map { |n| "#{n[0]}." } + [last]).join(" ")
  end

  def LabMetadata.pubmed_abbreviation(name)
    n = name.split(/ +/)
    last = n.pop
    last + " " + n.map { |n| n[0] }.join("")
  end

  def LabMetadata.ris_for(pub)
    fields = []
    venue = LabMetadata.complete_venue(pub)
    fields.push(["TY", 
      case venue["type"]
      when "journal"                            then "JOUR"
      when "conference", "workshop", "abstract" then "CONF"
      when "thesis"                             then "THES"
      when "techreport"                         then "RPRT"
      when "chapter"                            then "CHAP"
      when "patent"                             then "PAT"
      else raise "Unknown pub type for RIS: '#{venue["type"]}' (in #{pub["title"]})"
      end
    ])
    pub["authors"].each do |au|
      au = au.split(" ")
      last = au.pop
      first = au.shift
      first = ([first] + au.map { |n| n[0]+"." }).join(" ")
      fields.push(["AU",
        "#{last}, #{first}"
      ])
    end
    fields.push(["PY", venue["year"].to_s])
    fields.push(["TI", pub["title"]])
    fields.push(["T2", venue["fullname"]])
    if venue["type"] == "journal" then
      if pub.include? "pages"
        pages = pub["pages"].split("-+")
        fields.push(["SP", pages[0]])
        fields.push(["EP", if pages.size > 1 then pages[1] else pages[0] end])
      end
      fields.push(["VL", pub["volume"].to_s])
    end
    fields.push(["ER", ""])
    fields.map { |tag,value| "#{tag} - #{value}" }.join("\n")
  end

  def LabMetadata.person_name(full, args = {})
    person = LabMetadata.data_for(full)
    person = {} if person.nil?
    case args.fetch(:size, :short)
      when :full then person["full"] or full
      when :short then person["short"] or abbreviate_person(full)
      when :last then person["last"] or full.split(/ +/).pop
    end
  end

  @@publication_erb = File.open("lib/publication.erb"){ |f| ERB.new(f.readlines.join) }

  def LabMetadata.render_pub(pub)
    b = binding()
    b.local_variable_set(:pub, pub)
    @@publication_erb.result(b)
  end

  def LabMetadata.render_pubs(publist)
    "<dl>\n"+publist.map { |pub| render_pub(pub) }.join("\n")+"\n</dt>"
  end

  def LabMetadata.info_for_affiliate(name)
    info = { "canonical" => name }
    while(info.include? "canonical")
      name = info["canonical"]
      info = $db["people"][name] or raise "Unknown Collaborator: #{name}"
    end
    return { "name" => name }.merge(info)
  end

  def LabMetadata.format_pub_for_report(pub)
    pub = LabMetadata::complete_venue(pub)
    pub =
      case pub["type"]
      when "conference", "journal", "workshop", "abstract" then
        [ pub["title"],
          pub["authors"].join(", "),
          "#{LabMetadata::venue_name(pub, size: :full_parens)} #{pub["year"]}",
          pub["urls"].map { |k,v| "#{k.capitalize}: #{v}" },
          LabMetadata.bibtex_for(pub).split("\n")
        ].flatten
      when "thesis" then
        [ pub["title"],
          pub["authors"].join(", "),
          "Thesis #{pub["degree"]} #{pub["year"]}",
          pub.fetch("urls", []).map { |k,v| "#{k.capitalize}: #{v}" },
          LabMetadata.bibtex_for(pub).split("\n")
        ].flatten
      else nil
      end
    pub = "> " + pub.join("\n  ") unless pub.nil?
    return pub
  end

end