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16017 commits

Author SHA1 Message Date
Jakob Odersky 80127935df [SPARK-10001] [CORE] Interrupt tasks in repl with Ctrl+C
## What changes were proposed in this pull request?

Improve signal handling to allow interrupting running tasks from the REPL (with Ctrl+C).
If no tasks are running or Ctrl+C is pressed twice, the signal is forwarded to the default handler resulting in the usual termination of the application.

This PR is a rewrite of -- and therefore closes #8216 -- as per piaozhexiu's request

## How was this patch tested?
Signal handling is not easily testable therefore no unit tests were added. Nevertheless, the new functionality is implemented in a best-effort approach, soft-failing in case signals aren't available on a specific OS.

Author: Jakob Odersky <jakob@odersky.com>

Closes #12557 from jodersky/SPARK-10001-sigint.
2016-04-21 22:04:08 -07:00
Reynold Xin 3405cc7758 [SPARK-14835][SQL] Remove MetastoreRelation dependency from SQLBuilder
## What changes were proposed in this pull request?
This patch removes SQLBuilder's dependency on MetastoreRelation. We should be able to move SQLBuilder into the sql/core package after this change.

## How was this patch tested?
N/A - covered by existing tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12594 from rxin/SPARK-14835.
2016-04-21 21:48:48 -07:00
Cheng Lian 145433f1aa [SPARK-14369] [SQL] Locality support for FileScanRDD
(This PR is a rebased version of PR #12153.)

## What changes were proposed in this pull request?

This PR adds preliminary locality support for `FileFormat` data sources by overriding `FileScanRDD.preferredLocations()`. The strategy can be divided into two parts:

1.  Block location lookup

    Unlike `HadoopRDD` or `NewHadoopRDD`, `FileScanRDD` doesn't have access to the underlying `InputFormat` or `InputSplit`, and thus can't rely on `InputSplit.getLocations()` to gather locality information. Instead, this PR queries block locations using `FileSystem.getBlockLocations()` after listing all `FileStatus`es in `HDFSFileCatalog` and convert all `FileStatus`es into `LocatedFileStatus`es.

    Note that although S3/S3A/S3N file systems don't provide valid locality information, their `getLocatedStatus()` implementations don't actually issue remote calls either. So there's no need to special case these file systems.

2.  Selecting preferred locations

    For each `FilePartition`, we pick up top 3 locations that containing the most data to be retrieved. This isn't necessarily the best algorithm out there. Further improvements may be brought up in follow-up PRs.

## How was this patch tested?

Tested by overriding default `FileSystem` implementation for `file:///` with a mocked one, which returns mocked block locations.

Author: Cheng Lian <lian@databricks.com>

Closes #12527 from liancheng/spark-14369-locality-rebased.
2016-04-21 21:48:09 -07:00
Sameer Agarwal b29bc3f515 [SPARK-14680] [SQL] Support all datatypes to use VectorizedHashmap in TungstenAggregate
## What changes were proposed in this pull request?

This PR adds support for all primitive datatypes, decimal types and stringtypes in the VectorizedHashmap during aggregation.

## How was this patch tested?

Existing tests for group-by aggregates should already test for all these datatypes. Additionally, manually inspected the generated code for all supported datatypes (details below).

Author: Sameer Agarwal <sameer@databricks.com>

Closes #12440 from sameeragarwal/all-datatypes.
2016-04-21 21:31:01 -07:00
Takuya UESHIN f1fdb23821 [SPARK-14793] [SQL] Code generation for large complex type exceeds JVM size limit.
## What changes were proposed in this pull request?

Code generation for complex type, `CreateArray`, `CreateMap`, `CreateStruct`, `CreateNamedStruct`, exceeds JVM size limit for large elements.

We should split generated code into multiple `apply` functions if the complex types have large elements,  like `UnsafeProjection` or others for large expressions.

## How was this patch tested?

I added some tests to check if the generated codes for the expressions exceed or not.

Author: Takuya UESHIN <ueshin@happy-camper.st>

Closes #12559 from ueshin/issues/SPARK-14793.
2016-04-21 21:17:56 -07:00
Andrew Or df1953f0df [SPARK-14824][SQL] Rename HiveContext object to HiveUtils
## What changes were proposed in this pull request?

Just a rename so we can get rid of `HiveContext.scala`. Note that this will conflict with #12585.

## How was this patch tested?

No change in functionality.

Author: Andrew Or <andrew@databricks.com>

Closes #12586 from andrewor14/rename-hc-object.
2016-04-21 17:57:59 -07:00
Reynold Xin 0bf8df250e [HOTFIX] Fix Java 7 compilation break 2016-04-21 17:52:10 -07:00
Reynold Xin f181aee07c [SPARK-14821][SQL] Implement AnalyzeTable in sql/core and remove HiveSqlAstBuilder
## What changes were proposed in this pull request?
This patch moves analyze table parsing into SparkSqlAstBuilder and removes HiveSqlAstBuilder.

In order to avoid extensive refactoring, I created a common trait for CatalogRelation and MetastoreRelation, and match on that. In the future we should probably just consolidate the two into a single thing so we don't need this common trait.

## How was this patch tested?
Updated unit tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12584 from rxin/SPARK-14821.
2016-04-21 17:41:29 -07:00
Yanbo Liang 4e726227a3 [SPARK-14479][ML] GLM supports output link prediction
## What changes were proposed in this pull request?
GLM supports output link prediction.
## How was this patch tested?
unit test.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #12287 from yanboliang/spark-14479.
2016-04-21 17:31:33 -07:00
Joseph K. Bradley f25a3ea8d3 [SPARK-14734][ML][MLLIB] Added asML, fromML methods for all spark.mllib Vector, Matrix types
## What changes were proposed in this pull request?

For maintaining wrappers around spark.mllib algorithms in spark.ml, it will be useful to have ```private[spark]``` methods for converting from one linear algebra representation to another.
This PR adds toNew, fromNew methods for all spark.mllib Vector and Matrix types.

## How was this patch tested?

Unit tests for all conversions

Author: Joseph K. Bradley <joseph@databricks.com>

Closes #12504 from jkbradley/linalg-conversions.
2016-04-21 16:50:09 -07:00
Eric Liang e2b5647ab9 [SPARK-14724] Use radix sort for shuffles and sort operator when possible
## What changes were proposed in this pull request?

Spark currently uses TimSort for all in-memory sorts, including sorts done for shuffle. One low-hanging fruit is to use radix sort when possible (e.g. sorting by integer keys). This PR adds a radix sort implementation to the unsafe sort package and switches shuffles and sorts to use it when possible.

The current implementation does not have special support for null values, so we cannot radix-sort `LongType`. I will address this in a follow-up PR.

## How was this patch tested?

Unit tests, enabling radix sort on existing tests. Microbenchmark results:

```
Running benchmark: radix sort 25000000
Java HotSpot(TM) 64-Bit Server VM 1.8.0_66-b17 on Linux 3.13.0-44-generic
Intel(R) Core(TM) i7-4600U CPU  2.10GHz

radix sort 25000000:                Best/Avg Time(ms)    Rate(M/s)   Per Row(ns)   Relative
-------------------------------------------------------------------------------------------
reference TimSort key prefix array     15546 / 15859          1.6         621.9       1.0X
reference Arrays.sort                    2416 / 2446         10.3          96.6       6.4X
radix sort one byte                       133 /  137        188.4           5.3     117.2X
radix sort two bytes                      255 /  258         98.2          10.2      61.1X
radix sort eight bytes                    991 /  997         25.2          39.6      15.7X
radix sort key prefix array              1540 / 1563         16.2          61.6      10.1X
```

I also ran a mix of the supported TPCDS queries and compared TimSort vs RadixSort metrics. The overall benchmark ran ~10% faster with radix sort on. In the breakdown below, the radix-enabled sort phases averaged about 20x faster than TimSort, however sorting is only a small fraction of the overall runtime. About half of the TPCDS queries were able to take advantage of radix sort.

```
TPCDS on master: 2499s real time, 8185s executor
    - 1171s in TimSort, avg 267 MB/s
(note the /s accounting is weird here since dataSize counts the record sizes too)

TPCDS with radix enabled: 2294s real time, 7391s executor
    - 596s in TimSort, avg 254 MB/s
    - 26s in radix sort, avg 4.2 GB/s
```

cc davies rxin

Author: Eric Liang <ekl@databricks.com>

Closes #12490 from ericl/sort-benchmark.
2016-04-21 16:48:51 -07:00
Xin Ren 6d1e4c4a65 [SPARK-14569][ML] Log instrumentation in KMeans
## What changes were proposed in this pull request?

https://issues.apache.org/jira/browse/SPARK-14569

Log instrumentation in KMeans:

- featuresCol
- predictionCol
- k
- initMode
- initSteps
- maxIter
- seed
- tol
- summary

## How was this patch tested?

Manually test on local machine, by running and checking output of org.apache.spark.examples.ml.KMeansExample

Author: Xin Ren <iamshrek@126.com>

Closes #12432 from keypointt/SPARK-14569.
2016-04-21 16:29:39 -07:00
Dongjoon Hyun 411454475a [SPARK-14780] [R] Add setLogLevel to SparkR
## What changes were proposed in this pull request?

This PR aims to add `setLogLevel` function to SparkR shell.

**Spark Shell**
```scala
scala> sc.setLogLevel("ERROR")
```

**PySpark**
```python
>>> sc.setLogLevel("ERROR")
```

**SparkR (this PR)**
```r
> setLogLevel(sc, "ERROR")
NULL
```

## How was this patch tested?

Pass the Jenkins tests including a new R testcase.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #12547 from dongjoon-hyun/SPARK-14780.
2016-04-21 16:09:50 -07:00
Sameer Agarwal f82aa82480 [SPARK-14774][SQL] Write unscaled values in ColumnVector.putDecimal
## What changes were proposed in this pull request?

We recently made `ColumnarBatch.row` mutable and added a new `ColumnVector.putDecimal` method to support putting `Decimal` values in the `ColumnarBatch`. This unfortunately introduced a bug wherein we were not updating the vector with the proper unscaled values.

## How was this patch tested?

This codepath is hit only when the vectorized aggregate hashmap is enabled. https://github.com/apache/spark/pull/12440 makes sure that a number of regression tests/benchmarks test this bugfix.

Author: Sameer Agarwal <sameer@databricks.com>

Closes #12541 from sameeragarwal/fix-bigdecimal.
2016-04-21 16:00:59 -07:00
Reynold Xin 1a95397bb6 [SPARK-14798][SQL] Move native command and script transformation parsing into SparkSqlAstBuilder
## What changes were proposed in this pull request?
This patch moves native command and script transformation into SparkSqlAstBuilder. This builds on #12561. See the last commit for diff.

## How was this patch tested?
Updated test cases to reflect this.

Author: Reynold Xin <rxin@databricks.com>

Closes #12564 from rxin/SPARK-14798.
2016-04-21 15:59:37 -07:00
Andrew Or ef6be7bedd [MINOR] Comment whitespace changes in #12553 2016-04-21 14:52:42 -07:00
Andrew Or a2e8d4fddd [SPARK-13643][SQL] Implement SparkSession
## What changes were proposed in this pull request?

After removing most of `HiveContext` in 8fc267ab33 we can now move existing functionality in `SQLContext` to `SparkSession`. As of this PR `SQLContext` becomes a simple wrapper that has a `SparkSession` and delegates all functionality to it.

## How was this patch tested?

Jenkins.

Author: Andrew Or <andrew@databricks.com>

Closes #12553 from andrewor14/implement-spark-session.
2016-04-21 14:18:18 -07:00
Reynold Xin 8e1bb0456d [SPARK-14801][SQL] Move MetastoreRelation to its own file
## What changes were proposed in this pull request?
This class is currently in HiveMetastoreCatalog.scala, which is a large file that makes refactoring and searching of usage difficult. Moving it out so I can then do SPARK-14799 and make the review of that simpler.

## How was this patch tested?
N/A - this is a straightforward move and should be covered by existing tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12567 from rxin/SPARK-14801.
2016-04-21 11:54:10 -07:00
Shixiong Zhu e4904d870a [SPARK-14699][CORE] Stop endpoints before closing the connections and don't stop client in Outbox
## What changes were proposed in this pull request?

In general, `onDisconnected` is for dealing with unexpected network disconnections. When RpcEnv.shutdown is called, the disconnections are expected so RpcEnv should not fire these events.

This PR moves `dispatcher.stop()` above closing the connections so that when stopping RpcEnv, the endpoints won't receive `onDisconnected` events.

In addition, Outbox should not close the client since it will be reused by others. This PR fixes it as well.

## How was this patch tested?

test("SPARK-14699: RpcEnv.shutdown should not fire onDisconnected events")

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #12481 from zsxwing/SPARK-14699.
2016-04-21 11:51:04 -07:00
Reynold Xin 3a21e8d5ed [SPARK-14795][SQL] Remove the use of Hive's variable substitution
## What changes were proposed in this pull request?
This patch builds on #12556 and completely removes the use of Hive's variable substitution.

## How was this patch tested?
Covered by existing tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12561 from rxin/SPARK-14795.
2016-04-21 11:42:25 -07:00
Reynold Xin 79008e6cfd [SPARK-14799][SQL] Remove MetastoreRelation dependency from AnalyzeTable - part 1
## What changes were proposed in this pull request?
This patch isolates AnalyzeTable's dependency on MetastoreRelation into a single line. After this we can work on converging MetastoreRelation and CatalogTable.

## How was this patch tested?
Covered by existing tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12566 from rxin/SPARK-14799.
2016-04-21 10:57:16 -07:00
Josh Rosen a70d40314c [SPARK-14783] Preserve full exception stacktrace in IsolatedClientLoader
In IsolatedClientLoader, we have a`catch` block which throws an exception without wrapping the original exception, causing the full exception stacktrace and any nested exceptions to be lost. This patch fixes this, improving the usefulness of classloading error messages.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #12548 from JoshRosen/improve-logging-for-hive-classloader-issues.
2016-04-21 10:43:22 -07:00
Lianhui Wang 4f369176b7 [SPARK-4452] [CORE] Shuffle data structures can starve others on the same thread for memory
## What changes were proposed in this pull request?
In #9241 It implemented a mechanism to call spill() on those SQL operators that support spilling if there is not enough memory for execution.
But ExternalSorter and AppendOnlyMap in Spark core are not worked. So this PR make them benefit from #9241. Now when there is not enough memory for execution, it can get memory by spilling ExternalSorter and AppendOnlyMap in Spark core.

## How was this patch tested?
add two unit tests for it.

Author: Lianhui Wang <lianhuiwang09@gmail.com>

Closes #10024 from lianhuiwang/SPARK-4452-2.
2016-04-21 10:02:23 -07:00
Josh Rosen 649335d6c1 [SPARK-14797][BUILD] Spark SQL POM should not hardcode spark-sketch_2.11 dep.
Spark SQL's POM hardcodes a dependency on `spark-sketch_2.11`, which causes Scala 2.10 builds to include the `_2.11` dependency. This is harmless since `spark-sketch` is a pure-Java module (see #12334 for a discussion of dropping the Scala version suffixes from these modules' artifactIds), but it's confusing to people looking at the published POMs.

This patch fixes this by using `${scala.binary.version}` to substitute the correct suffix, and also adds a set of Maven Enforcer rules to ensure that `_2.11` artifacts are not used in 2.10 builds (and vice-versa).

/cc ahirreddy, who spotted this issue.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #12563 from JoshRosen/fix-sketch-scala-version.
2016-04-21 09:57:26 -07:00
Parth Brahmbhatt 6fdd0e32a6 [SPARK-13988][CORE] Make replaying event logs multi threaded in Histo…ry server to ensure a single large log does not block other logs from being rendered.
## What changes were proposed in this pull request?
The patch makes event log processing multi threaded.

## How was this patch tested?
Existing tests pass, there is no new tests needed to test the functionality as this is a perf improvement. I tested the patch locally by generating one big event log (big1), one small event log(small1) and again a big event log(big2). Without this patch UI does not render any app for almost 30 seconds and then big2 and small1 appears. another 30 second delay and finally big1 also shows up in UI. With this change small1 shows up immediately and big1 and big2 comes up in 30 seconds. Locally it also displays them in the correct order in the UI.

Author: Parth Brahmbhatt <pbrahmbhatt@netflix.com>

Closes #11800 from Parth-Brahmbhatt/SPARK-13988.
2016-04-21 06:58:00 -05:00
Liang-Chi Hsieh 4ac6e75cd6 [HOTFIX] Remove wrong DDL tests
## What changes were proposed in this pull request?

As we moved most parsing rules to `SparkSqlParser`, some tests expected to throw exception are not correct anymore.

## How was this patch tested?
`DDLCommandSuite`

Author: Liang-Chi Hsieh <simonh@tw.ibm.com>

Closes #12572 from viirya/hotfix-ddl.
2016-04-21 13:18:39 +02:00
Bryan Cutler d53a51c1e5 [SPARK-14779][CORE] Corrected log message in Worker case KillExecutor
In o.a.s.deploy.worker.Worker.scala, when receiving a KillExecutor message from an invalid Master, fixed typo by changing the log message to read "..attemped to kill executor.."

Author: Bryan Cutler <cutlerb@gmail.com>

Closes #12546 from BryanCutler/worker-killexecutor-log-message.
2016-04-21 11:33:42 +01:00
hyukjinkwon ec2a276022 [SPARK-14787][SQL] Upgrade Joda-Time library from 2.9 to 2.9.3
## What changes were proposed in this pull request?
https://issues.apache.org/jira/browse/SPARK-14787

The possible problems are described in the JIRA above. Please refer this if you are wondering the purpose of this PR.

This PR upgrades Joda-Time library from 2.9 to 2.9.3.

## How was this patch tested?

`sbt scalastyle` and Jenkins tests in this PR.

closes #11847

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #12552 from HyukjinKwon/SPARK-14787.
2016-04-21 11:32:27 +01:00
Arash Parsa 2b8906c437 [SPARK-14739][PYSPARK] Fix Vectors parser bugs
## What changes were proposed in this pull request?

The PySpark deserialization has a bug that shows while deserializing all zero sparse vectors. This fix filters out empty string tokens before casting, hence properly stringified SparseVectors successfully get parsed.

## How was this patch tested?

Standard unit-tests similar to other methods.

Author: Arash Parsa <arash@ip-192-168-50-106.ec2.internal>
Author: Arash Parsa <arashpa@gmail.com>
Author: Vishnu Prasad <vishnu667@gmail.com>
Author: Vishnu Prasad S <vishnu667@gmail.com>

Closes #12516 from arashpa/SPARK-14739.
2016-04-21 11:29:24 +01:00
Sean Owen 8bd05c9db2 [SPARK-8393][STREAMING] JavaStreamingContext#awaitTermination() throws non-declared InterruptedException
## What changes were proposed in this pull request?

`JavaStreamingContext.awaitTermination` methods should be declared as `throws[InterruptedException]` so that this exception can be handled in Java code. Note this is not just a doc change, but an API change, since now (in Java) the method has a checked exception to handle. All await-like methods in Java APIs behave this way, so seems worthwhile for 2.0.

## How was this patch tested?

Jenkins tests

Author: Sean Owen <sowen@cloudera.com>

Closes #12418 from srowen/SPARK-8393.
2016-04-21 11:03:16 +01:00
Wenchen Fan cb51680d22 [SPARK-14753][CORE] remove internal flag in Accumulable
## What changes were proposed in this pull request?

the `Accumulable.internal` flag is only used to avoid registering internal accumulators for 2 certain cases:

1. `TaskMetrics.createTempShuffleReadMetrics`: the accumulators in the temp shuffle read metrics should not be registered.
2. `TaskMetrics.fromAccumulatorUpdates`: the created task metrics is only used to post event, accumulators inside it should not be registered.

For 1, we can create a `TempShuffleReadMetrics` that don't create accumulators, just keep the data and merge it at last.
For 2, we can un-register these accumulators immediately.

TODO: remove `internal` flag in `AccumulableInfo` with followup PR

## How was this patch tested?

existing tests.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #12525 from cloud-fan/acc.
2016-04-21 01:06:22 -07:00
Reynold Xin 228128ce25 [SPARK-14794][SQL] Don't pass analyze command into Hive
## What changes were proposed in this pull request?
We shouldn't pass analyze command to Hive because some of those would require running MapReduce jobs. For now, let's just always run the no scan analyze.

## How was this patch tested?
Updated test case to reflect this change.

Author: Reynold Xin <rxin@databricks.com>

Closes #12558 from rxin/parser-analyze.
2016-04-21 00:31:06 -07:00
Reynold Xin 3b9fd51739 [HOTFIX] Disable flaky tests 2016-04-21 00:25:28 -07:00
Reynold Xin 77d847ddb2 [SPARK-14792][SQL] Move as many parsing rules as possible into SQL parser
## What changes were proposed in this pull request?
This patch moves as many parsing rules as possible into SQL parser. There are only three more left after this patch: (1) run native command, (2) analyze, and (3) script IO. These 3 will be dealt with in a follow-up PR.

## How was this patch tested?
No test change. This simply moves code around.

Author: Reynold Xin <rxin@databricks.com>

Closes #12556 from rxin/SPARK-14792.
2016-04-21 00:24:24 -07:00
Josh Rosen cfe472a34e [SPARK-14786] Remove hive-cli dependency from hive subproject
The `hive` subproject currently depends on `hive-cli` in order to perform a check to see whether a `SessionState` is an instance of `org.apache.hadoop.hive.cli.CliSessionState` (see #9589). The introduction of this `hive-cli` dependency has caused problems for users whose Hive metastore JAR classpaths don't include the `hive-cli` classes (such as in #11495).

This patch removes this dependency on `hive-cli` and replaces the `isInstanceOf` check by reflection. I added a Maven Enforcer rule to ban `hive-cli` from the `hive` subproject in order to make sure that this dependency is not accidentally reintroduced.

/cc rxin yhuai adrian-wang preecet

Author: Josh Rosen <joshrosen@databricks.com>

Closes #12551 from JoshRosen/remove-hive-cli-dep-from-hive-subproject.
2016-04-20 22:50:27 -07:00
Reynold Xin 8045814114 [SPARK-14782][SPARK-14778][SQL] Remove HiveConf dependency from HiveSqlAstBuilder
## What changes were proposed in this pull request?
The patch removes HiveConf dependency from HiveSqlAstBuilder. This is required in order to merge HiveSqlParser and SparkSqlAstBuilder, which would require getting rid of the Hive specific dependencies in HiveSqlParser.

This patch also accomplishes [SPARK-14778] Remove HiveSessionState.substitutor.

## How was this patch tested?
This should be covered by existing tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12550 from rxin/SPARK-14782.
2016-04-20 21:20:51 -07:00
Josh Rosen 90933e2afa [HOTFIX] Ignore all Docker integration tests
The Docker integration tests are failing very often (https://spark-tests.appspot.com/failed-tests) so I think we should disable these suites for now until we have time to improve them.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #12549 from JoshRosen/ignore-all-docker-tests.
2016-04-20 20:30:43 -07:00
Reynold Xin 24f338ba7b [SPARK-14775][SQL] Remove TestHiveSparkSession.rewritePaths
## What changes were proposed in this pull request?
The path rewrite in TestHiveSparkSession is pretty hacky. I think we can remove those complexity and just do a string replacement when we read the query files in. This would remove the overloading of runNativeSql in TestHive, which will simplify the removal of Hive specific variable substitution.

## How was this patch tested?
This is a small test refactoring to simplify test infrastructure.

Author: Reynold Xin <rxin@databricks.com>

Closes #12543 from rxin/SPARK-14775.
2016-04-20 17:56:31 -07:00
Marcelo Vanzin f47dbf27fa [SPARK-14602][YARN] Use SparkConf to propagate the list of cached files.
This change avoids using the environment to pass this information, since
with many jars it's easy to hit limits on certain OSes. Instead, it encodes
the information into the Spark configuration propagated to the AM.

The first problem that needed to be solved is a chicken & egg issue: the
config file is distributed using the cache, and it needs to contain information
about the files that are being distributed. To solve that, the code now treats
the config archive especially, and uses slightly different code to distribute
it, so that only its cache path needs to be saved to the config file.

The second problem is that the extra information would show up in the Web UI,
which made the environment tab even more noisy than it already is when lots
of jars are listed. This is solved by two changes: the list of cached files
is now read only once in the AM, and propagated down to the ExecutorRunnable
code (which actually sends the list to the NMs when starting containers). The
second change is to unset those config entries after the list is read, so that
the SparkContext never sees them.

Tested with both client and cluster mode by running "run-example SparkPi". This
uploads a whole lot of files when run from a build dir (instead of a distribution,
where the list is cleaned up), and I verified that the configs do not show
up in the UI.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #12487 from vanzin/SPARK-14602.
2016-04-20 16:57:23 -07:00
Reynold Xin 334c293ec0 [SPARK-14769][SQL] Create built-in functionality for variable substitution
## What changes were proposed in this pull request?
In order to fully merge the Hive parser and the SQL parser, we'd need to support variable substitution in Spark. The implementation of the substitute algorithm is mostly copied from Hive, but I simplified the overall structure quite a bit and added more comprehensive test coverage.

Note that this pull request does not yet use this functionality anywhere.

## How was this patch tested?
Added VariableSubstitutionSuite for unit tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12538 from rxin/SPARK-14769.
2016-04-20 16:32:38 -07:00
Reynold Xin b28fe448d9 [SPARK-14770][SQL] Remove unused queries in hive module test resources
## What changes were proposed in this pull request?
We currently have five folders in queries: clientcompare, clientnegative, clientpositive, negative, and positive. Only clientpositive is used. We can remove the rest.

## How was this patch tested?
N/A - removing unused test resources.

Author: Reynold Xin <rxin@databricks.com>

Closes #12540 from rxin/SPARK-14770.
2016-04-20 16:29:26 -07:00
Subhobrata Dey fd82681945 [SPARK-14749][SQL, TESTS] PlannerSuite failed when it run individually
## What changes were proposed in this pull request?

3 testcases namely,

```
"count is partially aggregated"
"count distinct is partially aggregated"
"mixed aggregates are partially aggregated"
```

were failing when running PlannerSuite individually.
The PR provides a fix for this.

## How was this patch tested?

unit tests

(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Author: Subhobrata Dey <sbcd90@gmail.com>

Closes #12532 from sbcd90/plannersuitetestsfix.
2016-04-20 14:26:07 -07:00
Sheamus K. Parkes e7791c4f69 [SPARK-13842] [PYSPARK] pyspark.sql.types.StructType accessor enhancements
## What changes were proposed in this pull request?

Expand the possible ways to interact with the contents of a `pyspark.sql.types.StructType` instance.
  - Iterating a `StructType` will iterate its fields
    - `[field.name for field in my_structtype]`
  - Indexing with a string will return a field by name
    - `my_structtype['my_field_name']`
  - Indexing with an integer will return a field by position
    - `my_structtype[0]`
  - Indexing with a slice will return a new `StructType` with just the chosen fields:
    - `my_structtype[1:3]`
  - The length is the number of fields (should also provide "truthiness" for free)
    - `len(my_structtype) == 2`

## How was this patch tested?

Extended the unit test coverage in the accompanying `tests.py`.

Author: Sheamus K. Parkes <shea.parkes@milliman.com>

Closes #12251 from skparkes/pyspark-structtype-enhance.
2016-04-20 13:45:14 -07:00
Shixiong Zhu 7bc948557b [SPARK-14678][SQL] Add a file sink log to support versioning and compaction
## What changes were proposed in this pull request?

This PR adds a special log for FileStreamSink for two purposes:

- Versioning. A future Spark version should be able to read the metadata of an old FileStreamSink.
- Compaction. As reading from many small files is usually pretty slow, we should compact small metadata files into big files.

FileStreamSinkLog has a new log format instead of Java serialization format. It will write one log file for each batch. The first line of the log file is the version number, and there are multiple JSON lines following. Each JSON line is a JSON format of FileLog.

FileStreamSinkLog will compact log files every "spark.sql.sink.file.log.compactLen" batches into a big file. When doing a compact, it will read all history logs and merge them with the new batch. During the compaction, it will also delete the files that are deleted (marked by FileLog.action). When the reader uses allLogs to list all files, this method only returns the visible files (drops the deleted files).

## How was this patch tested?

FileStreamSinkLogSuite

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #12435 from zsxwing/sink-log.
2016-04-20 13:33:04 -07:00
Yanbo Liang 296c384aff [MINOR][ML][PYSPARK] Fix omissive params which should use TypeConverter
## What changes were proposed in this pull request?
#11663 adds type conversion functionality for parameters in Pyspark. This PR find out the omissive ```Param``` that did not pass corresponding ```TypeConverter``` argument and fix them. After this PR, all params in pyspark/ml/ used ```TypeConverter```.

## How was this patch tested?
Existing tests.

cc jkbradley sethah

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #12529 from yanboliang/typeConverter.
2016-04-20 13:02:37 -07:00
Andrew Or 8fc267ab33 [SPARK-14720][SPARK-13643] Move Hive-specific methods into HiveSessionState and Create a SparkSession class
## What changes were proposed in this pull request?
This PR has two main changes.
1. Move Hive-specific methods from HiveContext to HiveSessionState, which help the work of removing HiveContext.
2. Create a SparkSession Class, which will later be the entry point of Spark SQL users.

## How was this patch tested?
Existing tests

This PR is trying to fix test failures of https://github.com/apache/spark/pull/12485.

Author: Andrew Or <andrew@databricks.com>
Author: Yin Huai <yhuai@databricks.com>

Closes #12522 from yhuai/spark-session.
2016-04-20 12:58:48 -07:00
Tathagata Das cb8ea9e1f3 [SPARK-14741][SQL] Fixed error in reading json file stream inside a partitioned directory
## What changes were proposed in this pull request?

Consider the following directory structure
dir/col=X/some-files
If we create a text format streaming dataframe on `dir/col=X/`  then it should not consider as partitioning in columns. Even though the streaming dataframe does not do so, the generated batch dataframes pick up col as a partitioning columns, causing mismatch streaming source schema and generated df schema. This leads to runtime failure:
```
18:55:11.262 ERROR org.apache.spark.sql.execution.streaming.StreamExecution: Query query-0 terminated with error
java.lang.AssertionError: assertion failed: Invalid batch: c#2 != c#7,type#8
```
The reason is that the partition inferring code has no idea of a base path, above which it should not search of partitions. This PR makes sure that the batch DF is generated with the basePath set as the original path on which the file stream source is defined.

## How was this patch tested?

New unit test

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #12517 from tdas/SPARK-14741.
2016-04-20 12:22:51 -07:00
Joseph K. Bradley acc7e592c4 [SPARK-14478][ML][MLLIB][DOC] Doc that StandardScaler uses the corrected sample std
## What changes were proposed in this pull request?

Currently, MLlib's StandardScaler scales columns using the corrected standard deviation (sqrt of unbiased variance). This matches what R's scale package does.

This PR documents this fact.

## How was this patch tested?

doc only

Author: Joseph K. Bradley <joseph@databricks.com>

Closes #12519 from jkbradley/scaler-variance-doc.
2016-04-20 11:48:30 -07:00
Yanbo Liang 08f84d7a9a [MINOR][ML][PYSPARK] Fix omissive param setters which should use _set method
## What changes were proposed in this pull request?
#11939 make Python param setters use the `_set` method. This PR fix omissive ones.

## How was this patch tested?
Existing tests.

cc jkbradley sethah

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #12531 from yanboliang/setters-omissive.
2016-04-20 20:06:27 +02:00
jerryshao 90cbc82fd4 [SPARK-14725][CORE] Remove HttpServer class
## What changes were proposed in this pull request?

This proposal removes the class `HttpServer`, with the changing of internal file/jar/class transmission to RPC layer, currently there's no code using this `HttpServer`, so here propose to remove it.

## How was this patch tested?

Unit test is verified locally.

Author: jerryshao <sshao@hortonworks.com>

Closes #12526 from jerryshao/SPARK-14725.
2016-04-20 10:48:11 -07:00