This PR is to provide two common `coalesce` and `repartition` in Dataset APIs.
After reading the comments of SPARK-9999, I am unclear about the plan for supporting re-partitioning in Dataset APIs. Currently, both RDD APIs and Dataframe APIs provide users such a flexibility to control the number of partitions.
In most traditional RDBMS, they expose the number of partitions, the partitioning columns, the table partitioning methods to DBAs for performance tuning and storage planning. Normally, these parameters could largely affect the query performance. Since the actual performance depends on the workload types, I think it is almost impossible to automate the discovery of the best partitioning strategy for all the scenarios.
I am wondering if Dataset APIs are planning to hide these APIs from users? Feel free to reject my PR if it does not match the plan.
Thank you for your answers. marmbrus rxin cloud-fan
Author: gatorsmile <gatorsmile@gmail.com>
Closes#9899 from gatorsmile/coalesce.
When using remote Hive metastore, `hive.metastore.uris` is set to the metastore URI. However, it overrides `javax.jdo.option.ConnectionURL` unexpectedly, thus the execution Hive client connects to the actual remote Hive metastore instead of the Derby metastore created in the temporary directory. Cleaning this configuration for the execution Hive client fixes this issue.
Author: Cheng Lian <lian@databricks.com>
Closes#9895 from liancheng/spark-11783.clean-remote-metastore-config.
After calling spill() on SortedIterator, the array inside InMemorySorter is not needed, it should be freed during spilling, this could help to join multiple tables with limited memory.
Author: Davies Liu <davies@databricks.com>
Closes#9793 from davies/free_array.
In the default Spark distribution, there are currently two separate
log4j config files, with different default values for the root logger,
so that when running the shell you have a different default log level.
This makes the shell more usable, since the logs don't overwhelm the
output.
But if you install a custom log4j.properties, you lose that, because
then it's going to be used no matter whether you're running a regular
app or the shell.
With this change, the overriding of the log level is done differently;
the log level repl's main class (org.apache.spark.repl.Main) is used
to define the root logger's level when running the shell, defaulting
to WARN if it's not set explicitly.
On a somewhat related change, the shell output about the "sc" variable
was changed a bit to contain a little more useful information about
the application, since when the root logger's log level is WARN, that
information is never shown to the user.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#9816 from vanzin/shell-logging.
Currently pivot's signature looks like
```scala
scala.annotation.varargs
def pivot(pivotColumn: Column, values: Column*): GroupedData
scala.annotation.varargs
def pivot(pivotColumn: String, values: Any*): GroupedData
```
I think we can remove the one that takes "Column" types, since callers should always be passing in literals. It'd also be more clear if the values are not varargs, but rather Seq or java.util.List.
I also made similar changes for Python.
Author: Reynold Xin <rxin@databricks.com>
Closes#9929 from rxin/SPARK-11946.
This is continuation of SPARK-11761
Andrew suggested adding this protection. See tail of https://github.com/apache/spark/pull/9741
Author: tedyu <yuzhihong@gmail.com>
Closes#9852 from tedyu/master.
Add read/write support to LDA, similar to ALS.
save/load for ml.LocalLDAModel is done.
For DistributedLDAModel, I'm not sure if we can invoke save on the mllib.DistributedLDAModel directly. I'll send update after some test.
Author: Yuhao Yang <hhbyyh@gmail.com>
Closes#9894 from hhbyyh/ldaMLsave.
Doc for 1.6 that the summaries mostly ignore the weight column.
To be corrected for 1.7
CC: mengxr thunterdb
Author: Joseph K. Bradley <joseph@databricks.com>
Closes#9927 from jkbradley/linregsummary-doc.
we should pass in resolved encodera to logical `CoGroup` and bind them in physical `CoGroup`
Author: Wenchen Fan <wenchen@databricks.com>
Closes#9928 from cloud-fan/cogroup.
`SessionManager` will set the `operationLog` if the configuration `hive.server2.logging.operation.enabled` is true in version of hive 1.2.1.
But the spark did not adapt to this change, so no matter enabled the configuration or not, spark thrift server will always log the warn message.
PS: if `hive.server2.logging.operation.enabled` is false, it should log the warn message (the same as hive thrift server).
Author: huangzhaowei <carlmartinmax@gmail.com>
Closes#9056 from SaintBacchus/SPARK-11043.
Based on feedback from Matei, this is more consistent with mapPartitions in Spark.
Also addresses some of the cleanups from a previous commit that renames the type variables.
Author: Reynold Xin <rxin@databricks.com>
Closes#9919 from rxin/SPARK-11933.
This is to bring the API documentation of StreamingLogisticReressionWithSGD and StreamingLinearRegressionWithSGC in line with the Scala versions.
-Fixed the algorithm descriptions
-Added default values to parameter descriptions
-Changed StreamingLogisticRegressionWithSGD regParam to default to 0, as in the Scala version
Author: Bryan Cutler <bjcutler@us.ibm.com>
Closes#9141 from BryanCutler/StreamingLogisticRegressionWithSGD-python-api-sync.
This patch attempts to speed up VersionsSuite by storing fetched Hive JARs in an Ivy cache that persists across tests runs. If `SPARK_VERSIONS_SUITE_IVY_PATH` is set, that path will be used for the cache; if it is not set, VersionsSuite will create a temporary Ivy cache which is deleted after the test completes.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#9624 from JoshRosen/SPARK-9866.
This change abstracts the code that serves jars / files to executors so that
each RpcEnv can have its own implementation; the akka version uses the existing
HTTP-based file serving mechanism, while the netty versions uses the new
stream support added to the network lib, which makes file transfers benefit
from the easier security configuration of the network library, and should also
reduce overhead overall.
The change includes a small fix to TransportChannelHandler so that it propagates
user events to downstream handlers.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#9530 from vanzin/SPARK-11140.
There's a very narrow race here where it would be possible for the timeout handler
to close a channel after the client factory verified that the channel was still
active. This change makes sure the client is marked as being recently in use so
that the timeout handler does not close it until a new timeout cycle elapses.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#9853 from vanzin/SPARK-11865.
This patch removes `spark.driver.allowMultipleContexts=true` from our test configuration. The multiple SparkContexts check was originally disabled because certain tests suites in SQL needed to create multiple contexts. As far as I know, this configuration change is no longer necessary, so we should remove it in order to make it easier to find test cleanup bugs.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#9865 from JoshRosen/SPARK-4424.
this currently breaks for python3 because `string` module doesn't have `letters` anymore, instead `ascii_letters` should be used
Author: Mortada Mehyar <mortada.mehyar@gmail.com>
Closes#9797 from mortada/python3_fix.
ML ```LinearRegression``` use ```data/mllib/sample_libsvm_data.txt``` as dataset in examples and user guide doc, but it's actually classification dataset rather than regression dataset. We should use ```data/mllib/sample_linear_regression_data.txt``` instead.
The deeper causes is that ```LinearRegression``` with "normal" solver can not solve this dataset correctly, may be due to the ill condition and unreasonable label. This issue has been reported at [SPARK-11918](https://issues.apache.org/jira/browse/SPARK-11918).
It will confuse users if they run the example code but get exception, so we should make this change which can clearly illustrate the usage of ```LinearRegression``` algorithm.
Author: Yanbo Liang <ybliang8@gmail.com>
Closes#9905 from yanboliang/spark-11920.
This way the timeout handling code can correctly close "hung" channels that are
processing streams.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#9747 from vanzin/SPARK-11762.
Add label expression support for AM to restrict it runs on the specific set of nodes. I tested it locally and works fine.
sryza and vanzin please help to review, thanks a lot.
Author: jerryshao <sshao@hortonworks.com>
Closes#9800 from jerryshao/SPARK-7173.
We should use `InternalRow.isNullAt` to check if the field is null before calling `InternalRow.getXXX`
Thanks gatorsmile who discovered this bug.
Author: Wenchen Fan <wenchen@databricks.com>
Closes#9904 from cloud-fan/null.
Can someone review my code to make sure I'm not missing anything? Thanks!
Author: Xiu Guo <xguo27@gmail.com>
Author: Xiu Guo <guoxi@us.ibm.com>
Closes#9612 from xguo27/SPARK-11628.
There is an unhandled case in the transform method of VectorAssembler if one of the input columns doesn't have one of the supported type DoubleType, NumericType, BooleanType or VectorUDT.
So, if you try to transform a column of StringType you get a cryptic "scala.MatchError: StringType".
This PR aims to fix this, throwing a SparkException when dealing with an unknown column type.
Author: BenFradet <benjamin.fradet@gmail.com>
Closes#9885 from BenFradet/SPARK-11902.
Like [SPARK-11852](https://issues.apache.org/jira/browse/SPARK-11852), ```k``` is params and we should save it under ```metadata/``` rather than both under ```data/``` and ```metadata/```. Refactor the constructor of ```ml.feature.PCAModel``` to take only ```pc``` but construct ```mllib.feature.PCAModel``` inside ```transform```.
Author: Yanbo Liang <ybliang8@gmail.com>
Closes#9897 from yanboliang/spark-11912.
This PR adds a sidebar menu when browsing the user guide of MLlib. It uses a YAML file to describe the structure of the documentation. It should be trivial to adapt this to the other projects.
Author: Timothy Hunter <timhunter@databricks.com>
Closes#9826 from thunterdb/spark-11835.
I believe this works for general estimators within CrossValidator, including compound estimators. (See the complex unit test.)
Added read/write for all 3 Evaluators as well.
CC: mengxr yanboliang
Author: Joseph K. Bradley <joseph@databricks.com>
Closes#9848 from jkbradley/cv-io.
We used the name `Dataset` to refer to `SchemaRDD` in 1.2 in ML pipelines and created this example file. Since `Dataset` has a new meaning in Spark 1.6, we should rename it to avoid confusion. This PR also removes support for dense format to simplify the example code.
cc: yinxusen
Author: Xiangrui Meng <meng@databricks.com>
Closes#9873 from mengxr/SPARK-11895.
1. Renamed map to mapGroup, flatMap to flatMapGroup.
2. Renamed asKey -> keyAs.
3. Added more documentation.
4. Changed type parameter T to V on GroupedDataset.
5. Added since versions for all functions.
Author: Reynold Xin <rxin@databricks.com>
Closes#9880 from rxin/SPARK-11899.
seems scala 2.11 doesn't support: define private methods in `trait xxx` and use it in `object xxx extend xxx`.
Author: Wenchen Fan <wenchen@databricks.com>
Closes#9879 from cloud-fan/follow.
In this PR I delete a method that breaks type inference for aggregators (only in the REPL)
The error when this method is present is:
```
<console>:38: error: missing parameter type for expanded function ((x$2) => x$2._2)
ds.groupBy(_._1).agg(sum(_._2), sum(_._3)).collect()
```
Author: Michael Armbrust <michael@databricks.com>
Closes#9870 from marmbrus/dataset-repl-agg.
