Fixed the following failure in https://amplab.cs.berkeley.edu/jenkins/job/NewSparkPullRequestBuilder/1787/testReport/junit/org.apache.spark.streaming/CheckpointSuite/recovery_maintains_rate_controller/
```
sbt.ForkMain$ForkError: The code passed to eventually never returned normally. Attempted 660 times over 10.000044392000001 seconds. Last failure message: 9223372036854775807 did not equal 200.
at org.scalatest.concurrent.Eventually$class.tryTryAgain$1(Eventually.scala:420)
at org.scalatest.concurrent.Eventually$class.eventually(Eventually.scala:438)
at org.scalatest.concurrent.Eventually$.eventually(Eventually.scala:478)
at org.scalatest.concurrent.Eventually$class.eventually(Eventually.scala:336)
at org.scalatest.concurrent.Eventually$.eventually(Eventually.scala:478)
at org.apache.spark.streaming.CheckpointSuite$$anonfun$15.apply$mcV$sp(CheckpointSuite.scala:413)
at org.apache.spark.streaming.CheckpointSuite$$anonfun$15.apply(CheckpointSuite.scala:396)
at org.apache.spark.streaming.CheckpointSuite$$anonfun$15.apply(CheckpointSuite.scala:396)
at org.scalatest.Transformer$$anonfun$apply$1.apply$mcV$sp(Transformer.scala:22)
at org.scalatest.OutcomeOf$class.outcomeOf(OutcomeOf.scala:85)
at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
at org.scalatest.Transformer.apply(Transformer.scala:22)
```
In this test, it calls `advanceTimeWithRealDelay(ssc, 2)` to run two batch jobs. However, one race condition is these two jobs can finish before the receiver is registered. Then `UpdateRateLimit` won't be sent to the receiver and `getDefaultBlockGeneratorRateLimit` cannot be updated.
Here are the logs related to this issue:
```
15/09/22 19:28:26.154 pool-1-thread-1-ScalaTest-running-CheckpointSuite INFO CheckpointSuite: Manual clock before advancing = 2500
15/09/22 19:28:26.869 JobScheduler INFO JobScheduler: Finished job streaming job 3000 ms.0 from job set of time 3000 ms
15/09/22 19:28:26.869 JobScheduler INFO JobScheduler: Total delay: 1442975303.869 s for time 3000 ms (execution: 0.711 s)
15/09/22 19:28:26.873 JobScheduler INFO JobScheduler: Finished job streaming job 3500 ms.0 from job set of time 3500 ms
15/09/22 19:28:26.873 JobScheduler INFO JobScheduler: Total delay: 1442975303.373 s for time 3500 ms (execution: 0.004 s)
15/09/22 19:28:26.879 sparkDriver-akka.actor.default-dispatcher-3 INFO ReceiverTracker: Registered receiver for stream 0 from localhost:57749
15/09/22 19:28:27.154 pool-1-thread-1-ScalaTest-running-CheckpointSuite INFO CheckpointSuite: Manual clock after advancing = 3500
```
`advanceTimeWithRealDelay(ssc, 2)` triggered job 3000ms and 3500ms but the receiver was registered after job 3000ms and 3500ms finished.
So we should make sure the receiver online before running `advanceTimeWithRealDelay(ssc, 2)`.
Author: zsxwing <zsxwing@gmail.com>
Closes#8877 from zsxwing/SPARK-10769.
`blockIntervalTimer.stop(interruptTimer = false)` doesn't guarantee calling `updateCurrentBuffer`. So it's possible that `blockIntervalTimer` will exit when `updateCurrentBuffer` is not empty. Then the data in `currentBuffer` will be lost.
To reproduce it, you can add `Thread.sleep(200)` in this line (69c9c17716/streaming/src/main/scala/org/apache/spark/streaming/util/RecurringTimer.scala (L100)) and run `StreamingContexSuite`.
I cannot write a unit test to reproduce it because I cannot find an approach to force `RecurringTimer` suspend at this line for a few milliseconds.
There was a failure in Jenkins here: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/41455/console
This PR updates RecurringTimer to make sure `stop(interruptTimer = false)` will call `callback` at least once after the `stop` method is called.
Author: zsxwing <zsxwing@gmail.com>
Closes#8417 from zsxwing/SPARK-10224.
The Scala example under the "Example: Pipeline" heading in this
document initializes the "test" variable to a DataFrame. Because test
is already a DF, there is not need to call test.toDF as the example
does in a subsequent line: model.transform(test.toDF). So, I removed
the extraneous toDF invocation.
Author: Matt Hagen <anonz3000@gmail.com>
Closes#8875 from hagenhaus/SPARK-10663.
**Please attribute this PR to `Zhichao Li <zhichao.liintel.com>`.**
This PR is based on PR #8476 authored by zhichao-li. It fixes SPARK-10310 by adding field delimiter SerDe property to the default `LazySimpleSerDe`, and enabling default record reader/writer classes.
Currently, we only support `LazySimpleSerDe`, used together with `TextRecordReader` and `TextRecordWriter`, and don't support customizing record reader/writer using `RECORDREADER`/`RECORDWRITER` clauses. This should be addressed in separate PR(s).
Author: Cheng Lian <lian@databricks.com>
Closes#8860 from liancheng/spark-10310/fix-script-trans-delimiters.
This patch refactors Python UDF handling:
1. Extract the per-partition Python UDF calling logic from PythonRDD into a PythonRunner. PythonRunner itself expects iterator as input/output, and thus has no dependency on RDD. This way, we can use PythonRunner directly in a mapPartitions call, or in the future in an environment without RDDs.
2. Use PythonRunner in Spark SQL's BatchPythonEvaluation.
3. Updated BatchPythonEvaluation to only use its input once, rather than twice. This should fix Python UDF performance regression in Spark 1.5.
There are a number of small cleanups I wanted to do when I looked at the code, but I kept most of those out so the diff looks small.
This basically implements the approach in https://github.com/apache/spark/pull/8833, but with some code moving around so the correctness doesn't depend on the inner workings of Spark serialization and task execution.
Author: Reynold Xin <rxin@databricks.com>
Closes#8835 from rxin/python-iter-refactor.
https://issues.apache.org/jira/browse/SPARK-10672
With changes in this PR, we will fallback to same the metadata of a table in Spark SQL specific way if we fail to save it in a hive compatible way (Hive throws an exception because of its internal restrictions, e.g. binary and decimal types cannot be saved to parquet if the metastore is running Hive 0.13). I manually tested the fix with the following test in `DataSourceWithHiveMetastoreCatalogSuite` (`spark.sql.hive.metastore.version=0.13` and `spark.sql.hive.metastore.jars`=`maven`).
```
test(s"fail to save metadata of a parquet table in hive 0.13") {
withTempPath { dir =>
withTable("t") {
val path = dir.getCanonicalPath
sql(
s"""CREATE TABLE t USING $provider
|OPTIONS (path '$path')
|AS SELECT 1 AS d1, cast("val_1" as binary) AS d2
""".stripMargin)
sql(
s"""describe formatted t
""".stripMargin).collect.foreach(println)
sqlContext.table("t").show
}
}
}
}
```
Without this fix, we will fail with the following error.
```
org.apache.hadoop.hive.ql.metadata.HiveException: java.lang.UnsupportedOperationException: Unknown field type: binary
at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:619)
at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:576)
at org.apache.spark.sql.hive.client.ClientWrapper$$anonfun$createTable$1.apply$mcV$sp(ClientWrapper.scala:359)
at org.apache.spark.sql.hive.client.ClientWrapper$$anonfun$createTable$1.apply(ClientWrapper.scala:357)
at org.apache.spark.sql.hive.client.ClientWrapper$$anonfun$createTable$1.apply(ClientWrapper.scala:357)
at org.apache.spark.sql.hive.client.ClientWrapper$$anonfun$withHiveState$1.apply(ClientWrapper.scala:256)
at org.apache.spark.sql.hive.client.ClientWrapper.retryLocked(ClientWrapper.scala:211)
at org.apache.spark.sql.hive.client.ClientWrapper.withHiveState(ClientWrapper.scala:248)
at org.apache.spark.sql.hive.client.ClientWrapper.createTable(ClientWrapper.scala:357)
at org.apache.spark.sql.hive.HiveMetastoreCatalog.createDataSourceTable(HiveMetastoreCatalog.scala:358)
at org.apache.spark.sql.hive.execution.CreateMetastoreDataSourceAsSelect.run(commands.scala:285)
at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult$lzycompute(commands.scala:57)
at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult(commands.scala:57)
at org.apache.spark.sql.execution.ExecutedCommand.doExecute(commands.scala:69)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$5.apply(SparkPlan.scala:140)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$5.apply(SparkPlan.scala:138)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:150)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:138)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:58)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:58)
at org.apache.spark.sql.DataFrame.<init>(DataFrame.scala:144)
at org.apache.spark.sql.DataFrame.<init>(DataFrame.scala:129)
at org.apache.spark.sql.DataFrame$.apply(DataFrame.scala:51)
at org.apache.spark.sql.SQLContext.sql(SQLContext.scala:725)
at org.apache.spark.sql.test.SQLTestUtils$$anonfun$sql$1.apply(SQLTestUtils.scala:56)
at org.apache.spark.sql.test.SQLTestUtils$$anonfun$sql$1.apply(SQLTestUtils.scala:56)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1$$anonfun$apply$mcV$sp$2$$anonfun$apply$2.apply$mcV$sp(HiveMetastoreCatalogSuite.scala:165)
at org.apache.spark.sql.test.SQLTestUtils$class.withTable(SQLTestUtils.scala:150)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite.withTable(HiveMetastoreCatalogSuite.scala:52)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1$$anonfun$apply$mcV$sp$2.apply(HiveMetastoreCatalogSuite.scala:162)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1$$anonfun$apply$mcV$sp$2.apply(HiveMetastoreCatalogSuite.scala:161)
at org.apache.spark.sql.test.SQLTestUtils$class.withTempPath(SQLTestUtils.scala:125)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite.withTempPath(HiveMetastoreCatalogSuite.scala:52)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1.apply$mcV$sp(HiveMetastoreCatalogSuite.scala:161)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1.apply(HiveMetastoreCatalogSuite.scala:161)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1.apply(HiveMetastoreCatalogSuite.scala:161)
at org.scalatest.Transformer$$anonfun$apply$1.apply$mcV$sp(Transformer.scala:22)
at org.scalatest.OutcomeOf$class.outcomeOf(OutcomeOf.scala:85)
at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
at org.scalatest.Transformer.apply(Transformer.scala:22)
at org.scalatest.Transformer.apply(Transformer.scala:20)
at org.scalatest.FunSuiteLike$$anon$1.apply(FunSuiteLike.scala:166)
at org.apache.spark.SparkFunSuite.withFixture(SparkFunSuite.scala:42)
at org.scalatest.FunSuiteLike$class.invokeWithFixture$1(FunSuiteLike.scala:163)
at org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:175)
at org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:175)
at org.scalatest.SuperEngine.runTestImpl(Engine.scala:306)
at org.scalatest.FunSuiteLike$class.runTest(FunSuiteLike.scala:175)
at org.scalatest.FunSuite.runTest(FunSuite.scala:1555)
at org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:208)
at org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:208)
at org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:413)
at org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:401)
at scala.collection.immutable.List.foreach(List.scala:318)
at org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:401)
at org.scalatest.SuperEngine.org$scalatest$SuperEngine$$runTestsInBranch(Engine.scala:396)
at org.scalatest.SuperEngine.runTestsImpl(Engine.scala:483)
at org.scalatest.FunSuiteLike$class.runTests(FunSuiteLike.scala:208)
at org.scalatest.FunSuite.runTests(FunSuite.scala:1555)
at org.scalatest.Suite$class.run(Suite.scala:1424)
at org.scalatest.FunSuite.org$scalatest$FunSuiteLike$$super$run(FunSuite.scala:1555)
at org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:212)
at org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:212)
at org.scalatest.SuperEngine.runImpl(Engine.scala:545)
at org.scalatest.FunSuiteLike$class.run(FunSuiteLike.scala:212)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite.org$scalatest$BeforeAndAfterAll$$super$run(HiveMetastoreCatalogSuite.scala:52)
at org.scalatest.BeforeAndAfterAll$class.liftedTree1$1(BeforeAndAfterAll.scala:257)
at org.scalatest.BeforeAndAfterAll$class.run(BeforeAndAfterAll.scala:256)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite.run(HiveMetastoreCatalogSuite.scala:52)
at org.scalatest.tools.Framework.org$scalatest$tools$Framework$$runSuite(Framework.scala:462)
at org.scalatest.tools.Framework$ScalaTestTask.execute(Framework.scala:671)
at sbt.ForkMain$Run$2.call(ForkMain.java:294)
at sbt.ForkMain$Run$2.call(ForkMain.java:284)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.UnsupportedOperationException: Unknown field type: binary
at org.apache.hadoop.hive.ql.io.parquet.serde.ArrayWritableObjectInspector.getObjectInspector(ArrayWritableObjectInspector.java:108)
at org.apache.hadoop.hive.ql.io.parquet.serde.ArrayWritableObjectInspector.<init>(ArrayWritableObjectInspector.java:60)
at org.apache.hadoop.hive.ql.io.parquet.serde.ParquetHiveSerDe.initialize(ParquetHiveSerDe.java:113)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.getDeserializer(MetaStoreUtils.java:339)
at org.apache.hadoop.hive.ql.metadata.Table.getDeserializerFromMetaStore(Table.java:288)
at org.apache.hadoop.hive.ql.metadata.Table.checkValidity(Table.java:194)
at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:597)
... 76 more
```
Author: Yin Huai <yhuai@databricks.com>
Closes#8824 from yhuai/datasourceMetadata.
The current shuffle code has an interface named ShuffleReader with only one implementation, HashShuffleReader. This naming is confusing, since the same read path code is used for both sort- and hash-based shuffle. This patch addresses this by renaming HashShuffleReader to BlockStoreShuffleReader.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8825 from JoshRosen/shuffle-reader-cleanup.
If we cache the InputFormat, all tasks on the same executor will share it.
Some InputFormat is thread safety, but some are not, such as HiveHBaseTableInputFormat. If tasks share a non thread safe InputFormat, unexpected error may be occurs.
To avoid it, I think we should delete the input format caching.
Author: xutingjun <xutingjun@huawei.com>
Author: meiyoula <1039320815@qq.com>
Author: Xutingjun <xutingjun@huawei.com>
Closes#7918 from XuTingjun/cached_inputFormat.
Currently when you set illegal value for params of array type (such as IntArrayParam, DoubleArrayParam, StringArrayParam), it will throw IllegalArgumentException but with incomprehensible error information.
Take ```VectorSlicer.setNames``` as an example:
```scala
val vectorSlicer = new VectorSlicer().setInputCol("features").setOutputCol("result")
// The value of setNames must be contain distinct elements, so the next line will throw exception.
vectorSlicer.setIndices(Array.empty).setNames(Array("f1", "f4", "f1"))
```
It will throw IllegalArgumentException as:
```
vectorSlicer_b3b4d1a10f43 parameter names given invalid value [Ljava.lang.String;798256c5.
java.lang.IllegalArgumentException: vectorSlicer_b3b4d1a10f43 parameter names given invalid value [Ljava.lang.String;798256c5.
```
We should distinguish the value of array type from primitive type at Param.validate(value: T), and we will get better error information.
```
vectorSlicer_3b744ea277b2 parameter names given invalid value [f1,f4,f1].
java.lang.IllegalArgumentException: vectorSlicer_3b744ea277b2 parameter names given invalid value [f1,f4,f1].
```
Author: Yanbo Liang <ybliang8@gmail.com>
Closes#8863 from yanboliang/spark-10750.
NodeIdCache: prevNodeIdsForInstances.unpersist() needs to be called at end of training.
Author: Holden Karau <holden@pigscanfly.ca>
Closes#8541 from holdenk/SPARK-9962-decission-tree-training-prevNodeIdsForiNstances-unpersist-at-end-of-training.
JIRA: https://issues.apache.org/jira/browse/SPARK-10446
Currently the method `join(right: DataFrame, usingColumns: Seq[String])` only supports inner join. It is more convenient to have it support other join types.
Author: Liang-Chi Hsieh <viirya@appier.com>
Closes#8600 from viirya/usingcolumns_df.
Reading from Microsoft SQL Server over jdbc fails when the table contains datetimeoffset types.
This patch registers a SQLServer JDBC Dialect that maps datetimeoffset to a String, as Microsoft suggest.
Author: Ewan Leith <ewan.leith@realitymine.com>
Closes#8575 from realitymine-coordinator/sqlserver.
Remove ._SUCCESS.crc hidden file that may cause problems in distribution tar archive, and is not used
Author: Sean Owen <sowen@cloudera.com>
Closes#8846 from srowen/SPARK-10716.
from the issue:
In Scala, I can supply a custom partitioner to reduceByKey (and other aggregation/repartitioning methods like aggregateByKey and combinedByKey), but as far as I can tell from the Pyspark API, there's no way to do the same in Python.
Here's an example of my code in Scala:
weblogs.map(s => (getFileType(s), 1)).reduceByKey(new FileTypePartitioner(),_+_)
But I can't figure out how to do the same in Python. The closest I can get is to call repartition before reduceByKey like so:
weblogs.map(lambda s: (getFileType(s), 1)).partitionBy(3,hash_filetype).reduceByKey(lambda v1,v2: v1+v2).collect()
But that defeats the purpose, because I'm shuffling twice instead of once, so my performance is worse instead of better.
Author: Holden Karau <holden@pigscanfly.ca>
Closes#8569 from holdenk/SPARK-9821-pyspark-reduceByKey-should-take-a-custom-partitioner.
In ```RUtils.sparkRPackagePath()``` we
1. Call ``` sys.props("spark.submit.deployMode")``` which returns null if ```spark.submit.deployMode``` is not suet
2. Call ``` sparkConf.get("spark.submit.deployMode")``` which throws ```NoSuchElementException``` if ```spark.submit.deployMode``` is not set. This patch simply passes a default value ("cluster") for ```spark.submit.deployMode```.
cc rxin
Author: Hossein <hossein@databricks.com>
Closes#8832 from falaki/SPARK-10711.
The job group, and job descriptions information is passed through thread local properties, and get inherited by child threads. In case of spark streaming, the streaming jobs inherit these properties from the thread that called streamingContext.start(). This may not make sense.
1. Job group: This is mainly used for cancelling a group of jobs together. It does not make sense to cancel streaming jobs like this, as the effect will be unpredictable. And its not a valid usecase any way, to cancel a streaming context, call streamingContext.stop()
2. Job description: This is used to pass on nice text descriptions for jobs to show up in the UI. The job description of the thread that calls streamingContext.start() is not useful for all the streaming jobs, as it does not make sense for all of the streaming jobs to have the same description, and the description may or may not be related to streaming.
The solution in this PR is meant for the Spark master branch, where local properties are inherited by cloning the properties. The job group and job description in the thread that starts the streaming scheduler are explicitly removed, so that all the subsequent child threads does not inherit them. Also, the starting is done in a new child thread, so that setting the job group and description for streaming, does not change those properties in the thread that called streamingContext.start().
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#8781 from tdas/SPARK-10649.
It would be nice to support creating a DataFrame directly from a Java List of Row.
Author: Holden Karau <holden@pigscanfly.ca>
Closes#8779 from holdenk/SPARK-10630-create-DataFrame-from-Java-List.
From JIRA: Add Python API, user guide and example for ml.feature.CountVectorizerModel
Author: Holden Karau <holden@pigscanfly.ca>
Closes#8561 from holdenk/SPARK-9769-add-python-api-for-countvectorizermodel.
Track pending tasks by partition ID instead of Task objects.
Before this change, failure & retry could result in a case where a stage got submitted before the map output from its dependencies get registered. This was due to an error in the condition for registering map outputs.
Author: hushan[胡珊] <hushan@xiaomi.com>
Author: Imran Rashid <irashid@cloudera.com>
Closes#7699 from squito/SPARK-5259.
In many modeling application, data points are not necessarily sampled with equal probabilities. Linear regression should support weighting which account the over or under sampling.
work in progress.
Author: Meihua Wu <meihuawu@umich.edu>
Closes#8631 from rotationsymmetry/SPARK-9642.
I noticed only one block manager registered with master in an unsuccessful build (https://amplab.cs.berkeley.edu/jenkins/job/Spark-Master-SBT/AMPLAB_JENKINS_BUILD_PROFILE=hadoop2.2,label=spark-test/3534/)
```
15/09/16 13:02:30.981 pool-1-thread-1-ScalaTest-running-BroadcastSuite INFO SparkContext: Running Spark version 1.6.0-SNAPSHOT
...
15/09/16 13:02:38.133 sparkDriver-akka.actor.default-dispatcher-19 INFO BlockManagerMasterEndpoint: Registering block manager localhost:48196 with 530.3 MB RAM, BlockManagerId(0, localhost, 48196)
```
In addition, the first block manager needed 7+ seconds to start. But the test expected 2 block managers so it failed.
However, there was no exception in this log file. So I checked a successful build (https://amplab.cs.berkeley.edu/jenkins/job/Spark-Master-SBT/3536/AMPLAB_JENKINS_BUILD_PROFILE=hadoop2.2,label=spark-test/) and it needed 4-5 seconds to set up the local cluster:
```
15/09/16 18:11:27.738 sparkWorker1-akka.actor.default-dispatcher-5 INFO Worker: Running Spark version 1.6.0-SNAPSHOT
...
15/09/16 18:11:30.838 sparkDriver-akka.actor.default-dispatcher-20 INFO BlockManagerMasterEndpoint: Registering block manager localhost:54202 with 530.3 MB RAM, BlockManagerId(1, localhost, 54202)
15/09/16 18:11:32.112 sparkDriver-akka.actor.default-dispatcher-20 INFO BlockManagerMasterEndpoint: Registering block manager localhost:32955 with 530.3 MB RAM, BlockManagerId(0, localhost, 32955)
```
In this build, the first block manager needed only 3+ seconds to start.
Comparing these two builds, I guess it's possible that the local cluster in `BroadcastSuite` cannot be ready in 10 seconds if the Jenkins worker is busy. So I just increased the timeout to 60 seconds to see if this can fix the issue.
Author: zsxwing <zsxwing@gmail.com>
Closes#8813 from zsxwing/fix-BroadcastSuite.
SPARK-3136 added a large number of functions for creating Java RandomRDDs, but for people that want to use custom RandomDataGenerators we should make a Java friendly method.
Author: Holden Karau <holden@pigscanfly.ca>
Closes#8782 from holdenk/SPARK-10626-create-java-friendly-method-for-randomRDD.
There are some missing API docs in pyspark.mllib.linalg.Vector (including DenseVector and SparseVector). We should add them based on their Scala counterparts.
Author: vinodkc <vinod.kc.in@gmail.com>
Closes#8834 from vinodkc/fix_SPARK-10631.
There are duplicate set of initialization flag in `WeightedLeastSquares#add`.
`initialized` is already set in `init(Int)`.
Author: lewuathe <lewuathe@me.com>
Closes#8837 from Lewuathe/duplicate-initialization-flag.
Note methods that fail for cols > 65535; note that SVD does not require n >= m
CC mengxr
Author: Sean Owen <sowen@cloudera.com>
Closes#8839 from srowen/SPARK-5905.
It does not make much sense to set `spark.shuffle.spill` or `spark.sql.planner.externalSort` to false: I believe that these configurations were initially added as "escape hatches" to guard against bugs in the external operators, but these operators are now mature and well-tested. In addition, these configurations are not handled in a consistent way anymore: SQL's Tungsten codepath ignores these configurations and will continue to use spilling operators. Similarly, Spark Core's `tungsten-sort` shuffle manager does not respect `spark.shuffle.spill=false`.
This pull request removes these configurations, adds warnings at the appropriate places, and deletes a large amount of code which was only used in code paths that did not support spilling.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8831 from JoshRosen/remove-ability-to-disable-spilling.
Since `scala.util.parsing.combinator.Parsers` is thread-safe since Scala 2.10 (See [SI-4929](https://issues.scala-lang.org/browse/SI-4929)), we can change SqlParser to object to avoid memory leak.
I didn't change other subclasses of `scala.util.parsing.combinator.Parsers` because there is only one instance in one SQLContext, which should not be an issue.
Author: zsxwing <zsxwing@gmail.com>
Closes#8357 from zsxwing/sql-memory-leak.
In Spark 1.5.0, Spark SQL is compatible with Hive 0.12.0 through 1.2.1 but the documentation is wrong.
/CC yhuai
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>
Closes#8776 from sarutak/SPARK-10584-2.
When `TungstenAggregation` hits memory pressure, it switches from hash-based to sort-based aggregation in-place. However, in the process we try to allocate the pointer array for writing to the new `UnsafeExternalSorter` *before* actually freeing the memory from the hash map. This lead to the following exception:
```
java.io.IOException: Could not acquire 65536 bytes of memory
at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.initializeForWriting(UnsafeExternalSorter.java:169)
at org.apache.spark.util.collection.unsafe.sort.UnsafeExternalSorter.spill(UnsafeExternalSorter.java:220)
at org.apache.spark.sql.execution.UnsafeKVExternalSorter.<init>(UnsafeKVExternalSorter.java:126)
at org.apache.spark.sql.execution.UnsafeFixedWidthAggregationMap.destructAndCreateExternalSorter(UnsafeFixedWidthAggregationMap.java:257)
at org.apache.spark.sql.execution.aggregate.TungstenAggregationIterator.switchToSortBasedAggregation(TungstenAggregationIterator.scala:435)
```
Author: Andrew Or <andrew@databricks.com>
Closes#8827 from andrewor14/allocate-pointer-array.
When pushing down a leaf predicate, ORC `SearchArgument` builder requires an extra "parent" predicate (any one among `AND`/`OR`/`NOT`) to wrap the leaf predicate. E.g., to push down `a < 1`, we must build `AND(a < 1)` instead. Fortunately, when actually constructing the `SearchArgument`, the builder will eliminate all those unnecessary wrappers.
This PR is based on #8783 authored by zhzhan. I also took the chance to simply `OrcFilters` a little bit to improve readability.
Author: Cheng Lian <lian@databricks.com>
Closes#8799 from liancheng/spark-10623/fix-orc-ppd.
