This patch modifies Spark's SBT build so that it no longer uses `retrieveManaged` / `lib_managed` to store its dependencies. The motivations for this change are nicely described on the JIRA ticket ([SPARK-7841](https://issues.apache.org/jira/browse/SPARK-7841)); my personal interest in doing this stems from the fact that `lib_managed` has caused me some pain while debugging dependency issues in another PR of mine.
Removing our use of `lib_managed` would be trivial except for one snag: the Datanucleus JARs, required by Spark SQL's Hive integration, cannot be included in assembly JARs due to problems with merging OSGI `plugin.xml` files. As a result, several places in the packaging and deployment pipeline assume that these Datanucleus JARs are copied to `lib_managed/jars`. In the interest of maintaining compatibility, I have chosen to retain the `lib_managed/jars` directory _only_ for these Datanucleus JARs and have added custom code to `SparkBuild.scala` to automatically copy those JARs to that folder as part of the `assembly` task.
`dev/mima` also depended on `lib_managed` in a hacky way in order to set classpaths when generating MiMa excludes; I've updated this to obtain the classpaths directly from SBT instead.
/cc dragos marmbrus pwendell srowen
Author: Josh Rosen <joshrosen@databricks.com>
Closes#9575 from JoshRosen/SPARK-7841.
Spark should build against Scala 2.10.5, since that includes a fix for Scaladoc that will fix doc snapshot publishing: https://issues.scala-lang.org/browse/SI-8479
Author: Josh Rosen <joshrosen@databricks.com>
Closes#9450 from JoshRosen/upgrade-to-scala-2.10.5.
This commit refactors the `run-tests-jenkins` script into Python. This refactoring was done by brennonyork in #7401; this PR contains a few minor edits from joshrosen in order to bring it up to date with other recent changes.
From the original PR description (by brennonyork):
Currently a few things are left out that, could and I think should, be smaller JIRA's after this.
1. There are still a few areas where we use environment variables where we don't need to (like `CURRENT_BLOCK`). I might get around to fixing this one in lieu of everything else, but wanted to point that out.
2. The PR tests are still written in bash. I opted to not change those and just rewrite the runner into Python. This is a great follow-on JIRA IMO.
3. All of the linting scripts are still in bash as well and would likely do to just add those in as follow-on JIRA's as well.
Closes#7401.
Author: Brennon York <brennon.york@capitalone.com>
Closes#9161 from JoshRosen/run-tests-jenkins-refactoring.
Our merge script now turns
```
[SPARK-1234][SPARK-1235][SPARK-1236][SQL] description
```
into
```
[SPARK-1234] [SPARK-1235] [SPARK-1236] [SQL] description
```
The extra spaces are more annoying in git since the first line of a git commit is supposed to be very short.
Doctest passes with the following command:
```
python -m doctest merge_spark_pr.py
```
Author: Reynold Xin <rxin@databricks.com>
Closes#9156 from rxin/SPARK-11169.
Removes any extra strings from the Java version, fixing subsequent integer parsing.
This is required since some OpenJDK versions (specifically in Debian testing), append an extra "-internal" string to the version field.
Author: Jakob Odersky <jodersky@gmail.com>
Closes#9111 from jodersky/fixtestrunner.
Spark's release packaging scripts used to live in a separate repository. Although these scripts are now part of the Spark repo, there are some minor patches made against the old repos that are missing in Spark's copy of the script. This PR ports those changes.
/cc shivaram, who originally submitted these changes against https://github.com/rxin/spark-utils
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8986 from JoshRosen/port-release-build-fixes-from-rxin-repo.
As of https://issues.apache.org/jira/browse/SPARK-7561, we no longer need to use our custom SCP-based mechanism for archiving Jenkins logs on the master machine; this has been superseded by the use of a Jenkins plugin which archives the logs and provides public links to view them.
Per shaneknapp, we should remove this log syncing mechanism if it is no longer necessary; removing the need to SCP from the Jenkins workers to the masters is a desired step as part of some larger Jenkins infra refactoring.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8793 from JoshRosen/remove-jenkins-ssh-to-master.
The calculation of Spark version is downloading
Scala and Zinc in the build directory which is
inflating the size of the source distribution.
Reseting the repo before packaging the source
distribution fix this issue.
Author: Luciano Resende <lresende@apache.org>
Closes#8774 from lresende/spark-10511.
This change does two things:
- tag a few tests and adds the mechanism in the build to be able to disable those tags,
both in maven and sbt, for both junit and scalatest suites.
- add some logic to run-tests.py to disable some tags depending on what files have
changed; that's used to disable expensive tests when a module hasn't explicitly
been changed, to speed up testing for changes that don't directly affect those
modules.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#8437 from vanzin/test-tags.
Location of JIRAError has moved between old and new versions of python-jira package.
Longer term it probably makes sense to pin to specific versions (as mentioned in https://issues.apache.org/jira/browse/SPARK-10498 ) but for now, making release tools works with both new and old versions of python-jira.
Author: Holden Karau <holden@pigscanfly.ca>
Closes#8661 from holdenk/SPARK-10497-release-utils-does-not-work-with-new-jira-python.
This is just some small glue code to actually make use of the
AMPLAB_JENKINS_BUILD_TOOL switch. As far as I can tell, we actually
don't currently use the Maven support in the tool even though it exists.
This patch switches to Maven when the PR title contains "test-maven".
There are a few small other pieces of cleanup in the patch as well.
Author: Patrick Wendell <patrick@databricks.com>
Closes#7878 from pwendell/maven-tests.
JoshRosen we'd like to check the SparkR source code with the `dev/lint-r` script on the Jenkins. I tried to incorporate the script into `dev/run-test.py`. Could you review it when you have time?
shivaram I modified `dev/lint-r` and `dev/lint-r.R` to install lintr package into a local directory(`R/lib/`) and to exit with a lint status. Could you review it?
- [[SPARK-8505] Add settings to kick `lint-r` from `./dev/run-test.py` - ASF JIRA](https://issues.apache.org/jira/browse/SPARK-8505)
Author: Yu ISHIKAWA <yuu.ishikawa@gmail.com>
Closes#7883 from yu-iskw/SPARK-8505.
The current `release-build.sh` has a typo which breaks snapshot publication for Scala 2.11. We should change the Scala version to 2.11 and clean before building a 2.11 snapshot.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8325 from JoshRosen/fix-2.11-snapshots.
This update contains some code changes to the release scripts that allow easier nightly publishing. I've been using these new scripts on Jenkins for cutting and publishing nightly snapshots for the last month or so, and it has been going well. I'd like to get them merged back upstream so this can be maintained by the community.
The main changes are:
1. Separates the release tagging from various build possibilities for an already tagged release (`release-tag.sh` and `release-build.sh`).
2. Allow for injecting credentials through the environment, including GPG keys. This is then paired with secure key injection in Jenkins.
3. Support for copying build results to a remote directory, and also "rotating" results, e.g. the ability to keep the last N copies of binary or doc builds.
I'm happy if anyone wants to take a look at this - it's not user facing but an internal utility used for generating releases.
Author: Patrick Wendell <patrick@databricks.com>
Closes#7411 from pwendell/release-script-updates and squashes the following commits:
74f9beb [Patrick Wendell] Moving maven build command to a variable
233ce85 [Patrick Wendell] [SPARK-1517] Refactor release scripts to facilitate nightly publishing
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#8092 from tdas/SPARK-9727 and squashes the following commits:
b1b01fd [Tathagata Das] Updated streaming kinesis project name
This PR is based on #4229, thanks prabeesh.
Closes#4229
Author: Prabeesh K <prabsmails@gmail.com>
Author: zsxwing <zsxwing@gmail.com>
Author: prabs <prabsmails@gmail.com>
Author: Prabeesh K <prabeesh.k@namshi.com>
Closes#7833 from zsxwing/pr4229 and squashes the following commits:
9570bec [zsxwing] Fix the variable name and check null in finally
4a9c79e [zsxwing] Fix pom.xml indentation
abf5f18 [zsxwing] Merge branch 'master' into pr4229
935615c [zsxwing] Fix the flaky MQTT tests
47278c5 [zsxwing] Include the project class files
478f844 [zsxwing] Add unpack
5f8a1d4 [zsxwing] Make the maven build generate the test jar for Python MQTT tests
734db99 [zsxwing] Merge branch 'master' into pr4229
126608a [Prabeesh K] address the comments
b90b709 [Prabeesh K] Merge pull request #1 from zsxwing/pr4229
d07f454 [zsxwing] Register StreamingListerner before starting StreamingContext; Revert unncessary changes; fix the python unit test
a6747cb [Prabeesh K] wait for starting the receiver before publishing data
87fc677 [Prabeesh K] address the comments:
97244ec [zsxwing] Make sbt build the assembly test jar for streaming mqtt
80474d1 [Prabeesh K] fix
1f0cfe9 [Prabeesh K] python style fix
e1ee016 [Prabeesh K] scala style fix
a5a8f9f [Prabeesh K] added Python test
9767d82 [Prabeesh K] implemented Python-friendly class
a11968b [Prabeesh K] fixed python style
795ec27 [Prabeesh K] address comments
ee387ae [Prabeesh K] Fix assembly jar location of mqtt-assembly
3f4df12 [Prabeesh K] updated version
b34c3c1 [prabs] adress comments
3aa7fff [prabs] Added Python streaming mqtt word count example
b7d42ff [prabs] Mqtt streaming support in Python
This PR adds the RowMatrix, IndexedRowMatrix, and CoordinateMatrix distributed matrices to PySpark. Each distributed matrix class acts as a wrapper around the Scala/Java counterpart by maintaining a reference to the Java object. New distributed matrices can be created using factory methods added to DistributedMatrices, which creates the Java distributed matrix and then wraps it with the corresponding PySpark class. This design allows for simple conversion between the various distributed matrices, and lets us re-use the Scala code. Serialization between Python and Java is implemented using DataFrames as needed for IndexedRowMatrix and CoordinateMatrix for simplicity. Associated documentation and unit-tests have also been added. To facilitate code review, this PR implements access to the rows/entries as RDDs, the number of rows & columns, and conversions between the various distributed matrices (not including BlockMatrix), and does not implement the other linear algebra functions of the matrices, although this will be very simple to add now.
Author: Mike Dusenberry <mwdusenb@us.ibm.com>
Closes#7554 from dusenberrymw/SPARK-6485_Add_CoordinateMatrix_RowMatrix_IndexedMatrix_to_PySpark and squashes the following commits:
bb039cb [Mike Dusenberry] Minor documentation update.
b887c18 [Mike Dusenberry] Updating the matrix conversion logic again to make it even cleaner. Now, we allow the 'rows' parameter in the constructors to be either an RDD or the Java matrix object. If 'rows' is an RDD, we create a Java matrix object, wrap it, and then store that. If 'rows' is a Java matrix object of the correct type, we just wrap and store that directly. This is only for internal usage, and publicly, we still require 'rows' to be an RDD. We no longer store the 'rows' RDD, and instead just compute it from the Java object when needed. The point of this is that when we do matrix conversions, we do the conversion on the Scala/Java side, which returns a Java object, so we should use that directly, but exposing 'java_matrix' parameter in the public API is not ideal. This non-public feature of allowing 'rows' to be a Java matrix object is documented in the '__init__' constructor docstrings, which are not part of the generated public API, and doctests are also included.
7f0dcb6 [Mike Dusenberry] Updating module docstring.
cfc1be5 [Mike Dusenberry] Use 'new SQLContext(matrix.rows.sparkContext)' rather than 'SQLContext.getOrCreate', as the later doesn't guarantee that the SparkContext will be the same as for the matrix.rows data.
687e345 [Mike Dusenberry] Improving conversion performance. This adds an optional 'java_matrix' parameter to the constructors, and pulls the conversion logic out into a '_create_from_java' function. Now, if the constructors are given a valid Java distributed matrix object as 'java_matrix', they will store those internally, rather than create a new one on the Scala/Java side.
3e50b6e [Mike Dusenberry] Moving the distributed matrices to pyspark.mllib.linalg.distributed.
308f197 [Mike Dusenberry] Using properties for better documentation.
1633f86 [Mike Dusenberry] Minor documentation cleanup.
f0c13a7 [Mike Dusenberry] CoordinateMatrix should inherit from DistributedMatrix.
ffdd724 [Mike Dusenberry] Updating doctests to make documentation cleaner.
3fd4016 [Mike Dusenberry] Updating docstrings.
27cd5f6 [Mike Dusenberry] Simplifying input conversions in the constructors for each distributed matrix.
a409cf5 [Mike Dusenberry] Updating doctests to be less verbose by using lists instead of DenseVectors explicitly.
d19b0ba [Mike Dusenberry] Updating code and documentation to note that a vector-like object (numpy array, list, etc.) can be used in place of explicit Vector object, and adding conversions when necessary to RowMatrix construction.
4bd756d [Mike Dusenberry] Adding param documentation to IndexedRow and MatrixEntry.
c6bded5 [Mike Dusenberry] Move conversion logic from tuples to IndexedRow or MatrixEntry types from within the IndexedRowMatrix and CoordinateMatrix constructors to separate _convert_to_indexed_row and _convert_to_matrix_entry functions.
329638b [Mike Dusenberry] Moving the Experimental tag to the top of each docstring.
0be6826 [Mike Dusenberry] Simplifying doctests by removing duplicated rows/entries RDDs within the various tests.
c0900df [Mike Dusenberry] Adding the colons that were accidentally not inserted.
4ad6819 [Mike Dusenberry] Documenting the and parameters.
3b854b9 [Mike Dusenberry] Minor updates to documentation.
10046e8 [Mike Dusenberry] Updating documentation to use class constructors instead of the removed DistributedMatrices factory methods.
119018d [Mike Dusenberry] Adding static methods to each of the distributed matrix classes to consolidate conversion logic.
4d7af86 [Mike Dusenberry] Adding type checks to the constructors. Although it is slightly verbose, it is better for the user to have a good error message than a cryptic stacktrace.
93b6a3d [Mike Dusenberry] Pulling the DistributedMatrices Python class out of this pull request.
f6f3c68 [Mike Dusenberry] Pulling the DistributedMatrices Scala class out of this pull request.
6a3ecb7 [Mike Dusenberry] Updating pattern matching.
08f287b [Mike Dusenberry] Slight reformatting of the documentation.
a245dc0 [Mike Dusenberry] Updating Python doctests for compatability between Python 2 & 3. Since Python 3 removed the idea of a separate 'long' type, all values that would have been outputted as a 'long' (ex: '4L') will now be treated as an 'int' and outputed as one (ex: '4'). The doctests now explicitly convert to ints so that both Python 2 and 3 will have the same output. This is fine since the values are all small, and thus can be easily represented as ints.
4d3a37e [Mike Dusenberry] Reformatting a few long Python doctest lines.
7e3ca16 [Mike Dusenberry] Fixing long lines.
f721ead [Mike Dusenberry] Updating documentation for each of the distributed matrices.
ab0e8b6 [Mike Dusenberry] Updating unit test to be more useful.
dda2f89 [Mike Dusenberry] Added wrappers for the conversions between the various distributed matrices. Added logic to be able to access the rows/entries of the distributed matrices, which requires serialization through DataFrames for IndexedRowMatrix and CoordinateMatrix types. Added unit tests.
0cd7166 [Mike Dusenberry] Implemented the CoordinateMatrix API in PySpark, following the idea of the IndexedRowMatrix API, including using DataFrames for serialization.
3c369cb [Mike Dusenberry] Updating the architecture a bit to make conversions between the various distributed matrix types easier. The different distributed matrix classes are now only wrappers around the Java objects, and take the Java object as an argument during construction. This way, we can call for example on an , which returns a reference to a Java RowMatrix object, and then construct a PySpark RowMatrix object wrapped around the Java object. This is analogous to the behavior of PySpark RDDs and DataFrames. We now delegate creation of the various distributed matrices from scratch in PySpark to the factory methods on .
4bdd09b [Mike Dusenberry] Implemented the IndexedRowMatrix API in PySpark, following the idea of the RowMatrix API. Note that for the IndexedRowMatrix, we use DataFrames to serialize the data between Python and Scala/Java, so we accept PySpark RDDs, then convert to a DataFrame, then convert back to RDDs on the Scala/Java side before constructing the IndexedRowMatrix.
23bf1ec [Mike Dusenberry] Updating documentation to add PySpark RowMatrix. Inserting newline above doctest so that it renders properly in API docs.
b194623 [Mike Dusenberry] Updating design to have a PySpark RowMatrix simply create and keep a reference to a wrapper over a Java RowMatrix. Updating DistributedMatrices factory methods to accept numRows and numCols with default values. Updating PySpark DistributedMatrices factory method to simply create a PySpark RowMatrix. Adding additional doctests for numRows and numCols parameters.
bc2d220 [Mike Dusenberry] Adding unit tests for RowMatrix methods.
d7e316f [Mike Dusenberry] Implemented the RowMatrix API in PySpark by doing the following: Added a DistributedMatrices class to contain factory methods for creating the various distributed matrices. Added a factory method for creating a RowMatrix from an RDD of Vectors. Added a createRowMatrix function to the PythonMLlibAPI to interface with the factory method. Added DistributedMatrix, DistributedMatrices, and RowMatrix classes to the pyspark.mllib.linalg api.
Cherry picked the parts of the initial SPARK-8064 WiP branch needed to get sql/hive to compile against hive 1.2.1. That's the ASF release packaged under org.apache.hive, not any fork.
Tests not run yet: that's what the machines are for
Author: Steve Loughran <stevel@hortonworks.com>
Author: Cheng Lian <lian@databricks.com>
Author: Michael Armbrust <michael@databricks.com>
Author: Patrick Wendell <patrick@databricks.com>
Closes#7191 from steveloughran/stevel/feature/SPARK-8064-hive-1.2-002 and squashes the following commits:
7556d85 [Cheng Lian] Updates .q files and corresponding golden files
ef4af62 [Steve Loughran] Merge commit '6a92bb09f46a04d6cd8c41bdba3ecb727ebb9030' into stevel/feature/SPARK-8064-hive-1.2-002
6a92bb0 [Cheng Lian] Overrides HiveConf time vars
dcbb391 [Cheng Lian] Adds com.twitter:parquet-hadoop-bundle:1.6.0 for Hive Parquet SerDe
0bbe475 [Steve Loughran] SPARK-8064 scalastyle rejects the standard Hadoop ASF license header...
fdf759b [Steve Loughran] SPARK-8064 classpath dependency suite to be in sync with shading in final (?) hive-exec spark
7a6c727 [Steve Loughran] SPARK-8064 switch to second staging repo of the spark-hive artifacts. This one has the protobuf-shaded hive-exec jar
376c003 [Steve Loughran] SPARK-8064 purge duplicate protobuf declaration
2c74697 [Steve Loughran] SPARK-8064 switch to the protobuf shaded hive-exec jar with tests to chase it down
cc44020 [Steve Loughran] SPARK-8064 remove hadoop.version from runtest.py, as profile will fix that automatically.
6901fa9 [Steve Loughran] SPARK-8064 explicit protobuf import
da310dc [Michael Armbrust] Fixes for Hive tests.
a775a75 [Steve Loughran] SPARK-8064 cherry-pick-incomplete
7404f34 [Patrick Wendell] Add spark-hive staging repo
832c164 [Steve Loughran] SPARK-8064 try to supress compiler warnings on Complex.java pasted-thrift-code
312c0d4 [Steve Loughran] SPARK-8064 maven/ivy dependency purge; calcite declaration needed
fa5ae7b [Steve Loughran] HIVE-8064 fix up hive-thriftserver dependencies and cut back on evicted references in the hive- packages; this keeps mvn and ivy resolution compatible, as the reconciliation policy is "by hand"
c188048 [Steve Loughran] SPARK-8064 manage the Hive depencencies to that -things that aren't needed are excluded -sql/hive built with ivy is in sync with the maven reconciliation policy, rather than latest-first
4c8be8d [Cheng Lian] WIP: Partial fix for Thrift server and CLI tests
314eb3c [Steve Loughran] SPARK-8064 deprecation warning noise in one of the tests
17b0341 [Steve Loughran] SPARK-8064 IDE-hinted cleanups of Complex.java to reduce compiler warnings. It's all autogenerated code, so still ugly.
d029b92 [Steve Loughran] SPARK-8064 rely on unescaping to have already taken place, so go straight to map of serde options
23eca7e [Steve Loughran] HIVE-8064 handle raw and escaped property tokens
54d9b06 [Steve Loughran] SPARK-8064 fix compilation regression surfacing from rebase
0b12d5f [Steve Loughran] HIVE-8064 use subset of hive complex type whose types deserialize
fce73b6 [Steve Loughran] SPARK-8064 poms rely implicitly on the version of kryo chill provides
fd3aa5d [Steve Loughran] SPARK-8064 version of hive to d/l from ivy is 1.2.1
dc73ece [Steve Loughran] SPARK-8064 revert to master's determinstic pushdown strategy
d3c1e4a [Steve Loughran] SPARK-8064 purge UnionType
051cc21 [Steve Loughran] SPARK-8064 switch to an unshaded version of hive-exec-core, which must have been built with Kryo 2.21. This currently looks for a (locally built) version 1.2.1.spark
6684c60 [Steve Loughran] SPARK-8064 ignore RTE raised in blocking process.exitValue() call
e6121e5 [Steve Loughran] SPARK-8064 address review comments
aa43dc6 [Steve Loughran] SPARK-8064 more robust teardown on JavaMetastoreDatasourcesSuite
f2bff01 [Steve Loughran] SPARK-8064 better takeup of asynchronously caught error text
8b1ef38 [Steve Loughran] SPARK-8064: on failures executing spark-submit in HiveSparkSubmitSuite, print command line and all logged output.
5a9ce6b [Steve Loughran] SPARK-8064 add explicit reason for kv split failure, rather than array OOB. *does not address the issue*
642b63a [Steve Loughran] SPARK-8064 reinstate something cut briefly during rebasing
97194dc [Steve Loughran] SPARK-8064 add extra logging to the YarnClusterSuite classpath test. There should be no reason why this is failing on jenkins, but as it is (and presumably its CP-related), improve the logging including any exception raised.
335357f [Steve Loughran] SPARK-8064 fail fast on thrive process spawning tests on exit codes and/or error string patterns seen in log.
3ed872f [Steve Loughran] SPARK-8064 rename field double to dbl
bca55e5 [Steve Loughran] SPARK-8064 missed one of the `date` escapes
41d6479 [Steve Loughran] SPARK-8064 wrap tests with withTable() calls to avoid table-exists exceptions
2bc29a4 [Steve Loughran] SPARK-8064 ParquetSuites to escape `date` field name
1ab9bc4 [Steve Loughran] SPARK-8064 TestHive to use sered2.thrift.test.Complex
bf3a249 [Steve Loughran] SPARK-8064: more resubmit than fix; tighten startup timeout to 60s. Still no obvious reason why jersey server code in spark-assembly isn't being picked up -it hasn't been shaded
c829b8f [Steve Loughran] SPARK-8064: reinstate yarn-rm-server dependencies to hive-exec to ensure that jersey server is on classpath on hadoop versions < 2.6
0b0f738 [Steve Loughran] SPARK-8064: thrift server startup to fail fast on any exception in the main thread
13abaf1 [Steve Loughran] SPARK-8064 Hive compatibilty tests sin sync with explain/show output from Hive 1.2.1
d14d5ea [Steve Loughran] SPARK-8064: DATE is now a predicate; you can't use it as a field in select ops
26eef1c [Steve Loughran] SPARK-8064: HIVE-9039 renamed TOK_UNION => TOK_UNIONALL while adding TOK_UNIONDISTINCT
3d64523 [Steve Loughran] SPARK-8064 improve diagns on uknown token; fix scalastyle failure
d0360f6 [Steve Loughran] SPARK-8064: delicate merge in of the branch vanzin/hive-1.1
1126e5a [Steve Loughran] SPARK-8064: name of unrecognized file format wasn't appearing in error text
8cb09c4 [Steve Loughran] SPARK-8064: test resilience/assertion improvements. Independent of the rest of the work; can be backported to earlier versions
dec12cb [Steve Loughran] SPARK-8064: when a CLI suite test fails include the full output text in the raised exception; this ensures that the stdout/stderr is included in jenkins reports, so it becomes possible to diagnose the cause.
463a670 [Steve Loughran] SPARK-8064 run-tests.py adds a hadoop-2.6 profile, and changes info messages to say "w/Hive 1.2.1" in console output
2531099 [Steve Loughran] SPARK-8064 successful attempt to get rid of pentaho as a transitive dependency of hive-exec
1d59100 [Steve Loughran] SPARK-8064 (unsuccessful) attempt to get rid of pentaho as a transitive dependency of hive-exec
75733fc [Steve Loughran] SPARK-8064 change thrift binary startup message to "Starting ThriftBinaryCLIService on port"
3ebc279 [Steve Loughran] SPARK-8064 move strings used to check for http/bin thrift services up into constants
c80979d [Steve Loughran] SPARK-8064: SparkSQLCLIDriver drops remote mode support. CLISuite Tests pass instead of timing out: undetected regression?
27e8370 [Steve Loughran] SPARK-8064 fix some style & IDE warnings
00e50d6 [Steve Loughran] SPARK-8064 stop excluding hive shims from dependency (commented out , for now)
cb4f142 [Steve Loughran] SPARK-8054 cut pentaho dependency from calcite
f7aa9cb [Steve Loughran] SPARK-8064 everything compiles with some commenting and moving of classes into a hive package
6c310b4 [Steve Loughran] SPARK-8064 subclass Hive ServerOptionsProcessor to make it public again
f61a675 [Steve Loughran] SPARK-8064 thrift server switched to Hive 1.2.1, though it doesn't compile everywhere
4890b9d [Steve Loughran] SPARK-8064, build against Hive 1.2.1
Update to shade plugin 2.4.1, which removes the need for the dependency-reduced-POM workaround and the 'release' profile. Fix management of shade plugin version so children inherit it; bump assembly plugin version while here
See https://issues.apache.org/jira/browse/SPARK-8819
I verified that `mvn clean package -DskipTests` works with Maven 3.3.3.
pwendell are you up for trying this for the 1.5.0 release?
Author: Sean Owen <sowen@cloudera.com>
Closes#7826 from srowen/SPARK-9507 and squashes the following commits:
e0b0fd2 [Sean Owen] Update to shade plugin 2.4.1, which removes the need for the dependency-reduced-POM workaround and the 'release' profile. Fix management of shade plugin version so children inherit it; bump assembly plugin version while here
This PR adds the Python API for Kinesis, including a Python example and a simple unit test.
Author: zsxwing <zsxwing@gmail.com>
Closes#6955 from zsxwing/kinesis-python and squashes the following commits:
e42e471 [zsxwing] Merge branch 'master' into kinesis-python
455f7ea [zsxwing] Remove streaming_kinesis_asl_assembly module and simply add the source folder to streaming_kinesis_asl module
32e6451 [zsxwing] Merge remote-tracking branch 'origin/master' into kinesis-python
5082d28 [zsxwing] Fix the syntax error for Python 2.6
fca416b [zsxwing] Fix wrong comparison
96670ff [zsxwing] Fix the compilation error after merging master
756a128 [zsxwing] Merge branch 'master' into kinesis-python
6c37395 [zsxwing] Print stack trace for debug
7c5cfb0 [zsxwing] RUN_KINESIS_TESTS -> ENABLE_KINESIS_TESTS
cc9d071 [zsxwing] Fix the python test errors
466b425 [zsxwing] Add python tests for Kinesis
e33d505 [zsxwing] Merge remote-tracking branch 'origin/master' into kinesis-python
3da2601 [zsxwing] Fix the kinesis folder
687446b [zsxwing] Fix the error message and the maven output path
add2beb [zsxwing] Merge branch 'master' into kinesis-python
4957c0b [zsxwing] Add the Python API for Kinesis
This is based on MechCoder 's PR https://github.com/apache/spark/pull/7731. Hopefully it could pass tests. MechCoder I tried to make minimal changes. If this passes Jenkins, we can merge this one first and then try to move `__init__.py` to `local.py` in a separate PR.
Closes#7731
Author: Xiangrui Meng <meng@databricks.com>
Closes#7746 from mengxr/SPARK-9408 and squashes the following commits:
0e05a3b [Xiangrui Meng] merge master
1135551 [Xiangrui Meng] add a comment for str(...)
c48cae0 [Xiangrui Meng] update tests
173a805 [Xiangrui Meng] move linalg.py to linalg/__init__.py
Author: zsxwing <zsxwing@gmail.com>
Closes#7711 from zsxwing/SPARK-9335-test and squashes the following commits:
c13ec2f [zsxwing] environs -> environ
69c2865 [zsxwing] Merge remote-tracking branch 'origin/master' into SPARK-9335-test
ef84a08 [zsxwing] Revert "Modify the Kinesis project to trigger ENABLE_KINESIS_TESTS"
f691028 [zsxwing] Modify the Kinesis project to trigger ENABLE_KINESIS_TESTS
7618205 [zsxwing] Enable Kinesis tests only when files in extras/kinesis-asl are changed
Instead of disabling all python style check, we should enable PEP8. So, this PR just comments out the part installing pylint.
Author: Yin Huai <yhuai@databricks.com>
Closes#7704 from yhuai/SPARK-9385 and squashes the following commits:
0056359 [Yin Huai] Enable PEP8 but disable installing pylint.
Add back change-version-to-X.sh scripts, as wrappers for new script, for backwards compatibility
Author: Sean Owen <sowen@cloudera.com>
Closes#7639 from srowen/SPARK-9304 and squashes the following commits:
9ab2681 [Sean Owen] Add deprecation message to wrappers
3c8c202 [Sean Owen] Add back change-version-to-X.sh scripts, as wrappers for new script, for backwards compatibility
Author: François Garillot <francois@garillot.net>
Closes#7595 from huitseeker/issue/SPARK-9250 and squashes the following commits:
80a0218 [François Garillot] [SPARK-9250] Make change-scala-version's usage more explicit, introduce a -h|--help option.
[[SPARK-9121] Get rid of the warnings about `no visible global function definition` in SparkR - ASF JIRA](https://issues.apache.org/jira/browse/SPARK-9121)
## The Result of `dev/lint-r`
[The result of lint-r for SPARK-9121 at the revision:1ddd0f2f1688560f88470e312b72af04364e2d49 when I have sent a PR](https://gist.github.com/yu-iskw/6f55953425901725edf6)
Author: Yu ISHIKAWA <yuu.ishikawa@gmail.com>
Closes#7567 from yu-iskw/SPARK-9121 and squashes the following commits:
c8cfd63 [Yu ISHIKAWA] Fix the typo
b1f19ed [Yu ISHIKAWA] Add a validate statement for local SparkR
1a03987 [Yu ISHIKAWA] Load the `testthat` package in `dev/lint-r.R`, instead of using the full path of function.
3a5e0ab [Yu ISHIKAWA] [SPARK-9121][SparkR] Get rid of the warnings about `no visible global function definition` in SparkR
These commits address a few minor issues in the Scala cross-version support in the build:
1. Correct two missing `${scala.binary.version}` pom file substitutions.
2. Don't update `scala.binary.version` in parent POM. This property is set through profiles.
3. Update the source of the generated scaladocs in `docs/_plugins/copy_api_dirs.rb`.
4. Factor common code out of `dev/change-version-to-*.sh` and add some validation. We also test `sed` to see if it's GNU sed and try `gsed` as an alternative if not. This prevents the script from running with a non-GNU sed.
This is my original work and I license this work to the Spark project under the Apache License.
Author: Michael Allman <michael@videoamp.com>
Closes#6832 from mallman/scala-versions and squashes the following commits:
cde2f17 [Michael Allman] Delete dev/change-version-to-*.sh, replacing them with single dev/change-scala-version.sh script that takes a version as argument
02296f2 [Michael Allman] Make the scala version change scripts cross-platform by restricting ourselves to POSIX sed syntax instead of looking for GNU sed
ad9b40a [Michael Allman] Factor change-scala-version.sh out of change-version-to-*.sh, adding command line argument validation and testing for GNU sed
bdd20bf [Michael Allman] Update source of scaladocs when changing Scala version
475088e [Michael Allman] Replace jackson-module-scala_2.10 with jackson-module-scala_${scala.binary.version}
Fixes feature introduced in #7508 to use the default value if nothing is specified in command line
cc liancheng rxin pwendell
Author: Shivaram Venkataraman <shivaram@cs.berkeley.edu>
Closes#7558 from shivaram/merge-script-fix and squashes the following commits:
7092141 [Shivaram Venkataraman] Use default primary author if unspecified
It's a common case that some contributor contributes an initial version of a feature/bugfix, and later on some other people (mostly committers) fork and add more improvements. When merging these PRs, we probably want to specify the original author as the primary author. Currently we can only do this by running
```
$ git commit --amend --author="name <email>"
```
manually right before the merge script pushes to Apache Git repo. It would be nice if the script accepts user specified primary author information.
Author: Cheng Lian <lian@databricks.com>
Closes#7508 from liancheng/spark-9179 and squashes the following commits:
218d88e [Cheng Lian] Allows committers to specify primary author of the PR to be merged
I Implemented the KMeans API for spark.ml Pipelines. But it doesn't include clustering abstractions for spark.ml (SPARK-7610). It would fit for another issues. And I'll try it later, since we are trying to add the hierarchical clustering algorithms in another issue. Thanks.
[SPARK-7879] KMeans API for spark.ml Pipelines - ASF JIRA https://issues.apache.org/jira/browse/SPARK-7879
Author: Yu ISHIKAWA <yuu.ishikawa@gmail.com>
Closes#6756 from yu-iskw/SPARK-7879 and squashes the following commits:
be752de [Yu ISHIKAWA] Add assertions
a14939b [Yu ISHIKAWA] Fix the dashed line's length in pyspark.ml.rst
4c61693 [Yu ISHIKAWA] Remove the test about whether "features" and "prediction" columns exist or not in Python
fb2417c [Yu ISHIKAWA] Use getInt, instead of get
f397be4 [Yu ISHIKAWA] Switch the comparisons.
ca78b7d [Yu ISHIKAWA] Add the Scala docs about the constraints of each parameter.
effc650 [Yu ISHIKAWA] Using expertSetParam and expertGetParam
c8dc6e6 [Yu ISHIKAWA] Remove an unnecessary test
19a9d63 [Yu ISHIKAWA] Include spark.ml.clustering to python tests
1abb19c [Yu ISHIKAWA] Add the statements about spark.ml.clustering into pyspark.ml.rst
f8338bc [Yu ISHIKAWA] Add the placeholders in Python
4a03003 [Yu ISHIKAWA] Test for contains in Python
6566c8b [Yu ISHIKAWA] Use `get`, instead of `apply`
288e8d5 [Yu ISHIKAWA] Using `contains` to check the column names
5a7d574 [Yu ISHIKAWA] Renamce `validateInitializationMode` to `validateInitMode` and remove throwing exception
97cfae3 [Yu ISHIKAWA] Fix the type of return value of `KMeans.copy`
e933723 [Yu ISHIKAWA] Remove the default value of seed from the Model class
978ee2c [Yu ISHIKAWA] Modify the docs of KMeans, according to mllib's KMeans
2ec80bc [Yu ISHIKAWA] Fit on 1 line
e186be1 [Yu ISHIKAWA] Make a few variables, setters and getters be expert ones
b2c205c [Yu ISHIKAWA] Rename the method `getInitializationSteps` to `getInitSteps` and `setInitializationSteps` to `setInitSteps` in Scala and Python
f43f5b4 [Yu ISHIKAWA] Rename the method `getInitializationMode` to `getInitMode` and `setInitializationMode` to `setInitMode` in Scala and Python
3cb5ba4 [Yu ISHIKAWA] Modify the description about epsilon and the validation
4fa409b [Yu ISHIKAWA] Add a comment about the default value of epsilon
2f392e1 [Yu ISHIKAWA] Make some variables `final` and Use `IntParam` and `DoubleParam`
19326f8 [Yu ISHIKAWA] Use `udf`, instead of callUDF
4d2ad1e [Yu ISHIKAWA] Modify the indentations
0ae422f [Yu ISHIKAWA] Add a test for `setParams`
4ff7913 [Yu ISHIKAWA] Add "ml.clustering" to `javacOptions` in SparkBuild.scala
11ffdf1 [Yu ISHIKAWA] Use `===` and the variable
220a176 [Yu ISHIKAWA] Set a random seed in the unit testing
92c3efc [Yu ISHIKAWA] Make the points for a test be fewer
c758692 [Yu ISHIKAWA] Modify the parameters of KMeans in Python
6aca147 [Yu ISHIKAWA] Add some unit testings to validate the setter methods
687cacc [Yu ISHIKAWA] Alias mllib.KMeans as MLlibKMeans in KMeansSuite.scala
a4dfbef [Yu ISHIKAWA] Modify the last brace and indentations
5bedc51 [Yu ISHIKAWA] Remve an extra new line
444c289 [Yu ISHIKAWA] Add the validation for `runs`
e41989c [Yu ISHIKAWA] Modify how to validate `initStep`
7ea133a [Yu ISHIKAWA] Change how to validate `initMode`
7991e15 [Yu ISHIKAWA] Add a validation for `k`
c2df35d [Yu ISHIKAWA] Make `predict` private
93aa2ff [Yu ISHIKAWA] Use `withColumn` in `transform`
d3a79f7 [Yu ISHIKAWA] Remove the inhefited docs
e9532e1 [Yu ISHIKAWA] make `parentModel` of KMeansModel private
8559772 [Yu ISHIKAWA] Remove the `paramMap` parameter of KMeans
6684850 [Yu ISHIKAWA] Rename `initializationSteps` to `initSteps`
99b1b96 [Yu ISHIKAWA] Rename `initializationMode` to `initMode`
79ea82b [Yu ISHIKAWA] Modify the parameters of KMeans docs
6569bcd [Yu ISHIKAWA] Change how to set the default values with `setDefault`
20a795a [Yu ISHIKAWA] Change how to set the default values with `setDefault`
11c2a12 [Yu ISHIKAWA] Limit the imports
badb481 [Yu ISHIKAWA] Alias spark.mllib.{KMeans, KMeansModel}
f80319a [Yu ISHIKAWA] Rebase mater branch and add copy methods
85d92b1 [Yu ISHIKAWA] Add `KMeans.setPredictionCol`
aa9469d [Yu ISHIKAWA] Fix a python test suite error caused by python 3.x
c2d6bcb [Yu ISHIKAWA] ADD Java test suites of the KMeans API for spark.ml Pipeline
598ed2e [Yu ISHIKAWA] Implement the KMeans API for spark.ml Pipelines in Python
63ad785 [Yu ISHIKAWA] Implement the KMeans API for spark.ml Pipelines in Scala
This adds Pylint checks to PySpark.
For now this lazy installs using easy_install to /dev/pylint (similar to the pep8 script).
We still need to figure out what rules to be allowed.
Author: MechCoder <manojkumarsivaraj334@gmail.com>
Closes#7241 from MechCoder/pylint and squashes the following commits:
2fc7291 [MechCoder] Remove pylint test fail
6d883a2 [MechCoder] Silence warnings and make pylint tests fail to check if it works in jenkins
f3a5e17 [MechCoder] undefined-variable
ca8b749 [MechCoder] Minor changes
71629f8 [MechCoder] remove trailing whitespace
8498ff9 [MechCoder] Remove blacklisted arguments and pointless statements check
1dbd094 [MechCoder] Disable all checks for now
8b8aa8a [MechCoder] Add pylint configuration file
7871bb1 [MechCoder] [SPARK-8706] [PySpark] [Project infra] Add pylint checks to PySpark
This adds Pylint checks to PySpark.
For now this lazy installs using easy_install to /dev/pylint (similar to the pep8 script).
We still need to figure out what rules to be allowed.
Author: MechCoder <manojkumarsivaraj334@gmail.com>
Closes#7241 from MechCoder/pylint and squashes the following commits:
8496834 [MechCoder] Silence warnings and make pylint tests fail to check if it works in jenkins
57393a3 [MechCoder] undefined-variable
a8e2547 [MechCoder] Minor changes
7753810 [MechCoder] remove trailing whitespace
75c5d2b [MechCoder] Remove blacklisted arguments and pointless statements check
6bde250 [MechCoder] Disable all checks for now
3464666 [MechCoder] Add pylint configuration file
d28109f [MechCoder] [SPARK-8706] [PySpark] [Project infra] Add pylint checks to PySpark
Author: Jonathan Alter <jonalter@users.noreply.github.com>
Closes#7093 from jonalter/SPARK-7977 and squashes the following commits:
ccd44cc [Jonathan Alter] Changed println to log in ThreadingSuite
7fcac3e [Jonathan Alter] Reverting to println in ThreadingSuite
10724b6 [Jonathan Alter] Changing some printlns to logs in tests
eeec1e7 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
0b1dcb4 [Jonathan Alter] More println cleanup
aedaf80 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
925fd98 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
0c16fa3 [Jonathan Alter] Replacing some printlns with logs
45c7e05 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
5c8e283 [Jonathan Alter] Allowing println in audit-release examples
5b50da1 [Jonathan Alter] Allowing printlns in example files
ca4b477 [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
83ab635 [Jonathan Alter] Fixing new printlns
54b131f [Jonathan Alter] Merge branch 'master' of github.com:apache/spark into SPARK-7977
1cd8a81 [Jonathan Alter] Removing some unnecessary comments and printlns
b837c3a [Jonathan Alter] Disallowing println
when publishing releases. We named it as 'release-profile' because that is
the Maven convention. However, it turns out this special name causes several
other things to kick-in when we are creating releases that are not desirable.
For instance, it triggers the javadoc plugin to run, which actually fails
in our current build set-up.
The fix is just to rename this to a different profile to have no
collateral damage associated with its use.
This is a workaround for MSHADE-148, which leads to an infinite loop when building Spark with maven 3.3.x. This was originally caused by #6441, which added a bunch of test dependencies on the spark-core test module. Recently, it was revealed by #7193.
This patch adds a `-Prelease` profile. If present, it will set `createDependencyReducedPom` to true. The consequences are:
- If you are releasing Spark with this profile, you are fine as long as you use maven 3.2.x or before.
- If you are releasing Spark without this profile, you will run into SPARK-8781.
- If you are not releasing Spark but you are using this profile, you may run into SPARK-8819.
- If you are not releasing Spark and you did not include this profile, you are fine.
This is all documented in `pom.xml` and tested locally with both versions of maven.
Author: Andrew Or <andrew@databricks.com>
Closes#7219 from andrewor14/fix-maven-build and squashes the following commits:
1d37e87 [Andrew Or] Merge branch 'master' of github.com:apache/spark into fix-maven-build
3574ae4 [Andrew Or] Review comments
f39199c [Andrew Or] Create a -Prelease profile that flags `createDependencyReducedPom`
This commit allows `dev/merge_spark_pr.py` to use personal GitHub OAuth tokens in order to make authenticated requests. This is necessary to work around per-IP rate limiting issues.
To use a token, just set the `GITHUB_OAUTH_KEY` environment variable. You can create a personal token at https://github.com/settings/tokens; we only require `public_repo` scope.
If the script fails due to a rate-limit issue, it now logs a useful message directing the user to the OAuth token instructions.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#7136 from JoshRosen/pr-merge-script-oauth-authentication and squashes the following commits:
4d011bd [Josh Rosen] Fix error message
23d92ff [Josh Rosen] Support GitHub OAuth tokens in dev/merge_spark_pr.py
Author: zsxwing <zsxwing@gmail.com>
Closes#6830 from zsxwing/flume-python and squashes the following commits:
78dfdac [zsxwing] Fix the compile error in the test code
f1bf3c0 [zsxwing] Address TD's comments
0449723 [zsxwing] Add sbt goal streaming-flume-assembly/assembly
e93736b [zsxwing] Fix the test case for determine_modules_to_test
9d5821e [zsxwing] Fix pyspark_core dependencies
f9ee681 [zsxwing] Merge branch 'master' into flume-python
7a55837 [zsxwing] Add streaming_flume_assembly to run-tests.py
b96b0de [zsxwing] Merge branch 'master' into flume-python
ce85e83 [zsxwing] Fix incompatible issues for Python 3
01cbb3d [zsxwing] Add import sys
152364c [zsxwing] Fix the issue that StringIO doesn't work in Python 3
14ba0ff [zsxwing] Add flume-assembly for sbt building
b8d5551 [zsxwing] Merge branch 'master' into flume-python
4762c34 [zsxwing] Fix the doc
0336579 [zsxwing] Refactor Flume unit tests and also add tests for Python API
9f33873 [zsxwing] Add the Python API for Flume
This commit parallelizes the Python unit test execution, significantly reducing Jenkins build times. Parallelism is now configurable by passing the `-p` or `--parallelism` flags to either `dev/run-tests` or `python/run-tests` (the default parallelism is 4, but I've successfully tested with higher parallelism).
To avoid flakiness, I've disabled the Spark Web UI for the Python tests, similar to what we've done for the JVM tests.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#7031 from JoshRosen/parallelize-python-tests and squashes the following commits:
feb3763 [Josh Rosen] Re-enable other tests
f87ea81 [Josh Rosen] Only log output from failed tests
d4ded73 [Josh Rosen] Logging improvements
a2717e1 [Josh Rosen] Make parallelism configurable via dev/run-tests
1bacf1b [Josh Rosen] Merge remote-tracking branch 'origin/master' into parallelize-python-tests
110cd9d [Josh Rosen] Fix universal_newlines for Python 3
cd13db8 [Josh Rosen] Also log python_implementation
9e31127 [Josh Rosen] Log Python --version output for each executable.
a2b9094 [Josh Rosen] Bump up parallelism.
5552380 [Josh Rosen] Python 3 fix
866b5b9 [Josh Rosen] Fix lazy logging warnings in Prospector checks
87cb988 [Josh Rosen] Skip MLLib tests for PyPy
8309bfe [Josh Rosen] Temporarily disable parallelism to debug a failure
9129027 [Josh Rosen] Disable Spark UI in Python tests
037b686 [Josh Rosen] Temporarily disable JVM tests so we can test Python speedup in Jenkins.
af4cef4 [Josh Rosen] Initial attempt at parallelizing Python test execution
