### What changes were proposed in this pull request?
When loading DataFrames from JDBC datasource with Kerberos authentication, remote executors (yarn-client/cluster etc. modes) fail to establish a connection due to lack of Kerberos ticket or ability to generate it.
This is a real issue when trying to ingest data from kerberized data sources (SQL Server, Oracle) in enterprise environment where exposing simple authentication access is not an option due to IT policy issues.
In this PR I've added MS SQL support.
What this PR contains:
* Added `MSSQLConnectionProvider`
* Added `MSSQLConnectionProviderSuite`
* Changed MS SQL JDBC driver to use the latest (test scope only)
* Changed `MsSqlServerIntegrationSuite` docker image to use the latest
* Added a version comment to `MariaDBConnectionProvider` to increase trackability
### Why are the changes needed?
Missing JDBC kerberos support.
### Does this PR introduce _any_ user-facing change?
Yes, now user is able to connect to MS SQL using kerberos.
### How was this patch tested?
* Additional + existing unit tests
* Existing integration tests
* Test on cluster manually
Closes#28635 from gaborgsomogyi/SPARK-31337.
Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@apache.org>
### What changes were proposed in this pull request?
This PR upgrades HtmlUnit.
Selenium and Jetty also upgraded because of dependency.
### Why are the changes needed?
Recently, a security issue which affects HtmlUnit is reported.
https://nvd.nist.gov/vuln/detail/CVE-2020-5529
According to the report, arbitrary code can be run by malicious users.
HtmlUnit is used for test so the impact might not be large but it's better to upgrade it just in case.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
Existing testcases.
Closes#28585 from sarutak/upgrade-htmlunit.
Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
### What changes were proposed in this pull request?
This PR upgrades HtmlUnit.
Selenium and Jetty also upgraded because of dependency.
### Why are the changes needed?
Recently, a security issue which affects HtmlUnit is reported.
https://nvd.nist.gov/vuln/detail/CVE-2020-5529
According to the report, arbitrary code can be run by malicious users.
HtmlUnit is used for test so the impact might not be large but it's better to upgrade it just in case.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
Existing testcases.
Closes#28585 from sarutak/upgrade-htmlunit.
Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
This reverts commit 92877c4ef2.
Closes#28602 from gengliangwang/revertSPARK-31765.
Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
### What changes were proposed in this pull request?
This PR upgrades HtmlUnit.
Selenium and Jetty also upgraded because of dependency.
### Why are the changes needed?
Recently, a security issue which affects HtmlUnit is reported.
https://nvd.nist.gov/vuln/detail/CVE-2020-5529
According to the report, arbitrary code can be run by malicious users.
HtmlUnit is used for test so the impact might not be large but it's better to upgrade it just in case.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
Existing testcases.
Closes#28585 from sarutak/upgrade-htmlunit.
Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
### What changes were proposed in this pull request?
When loading DataFrames from JDBC datasource with Kerberos authentication, remote executors (yarn-client/cluster etc. modes) fail to establish a connection due to lack of Kerberos ticket or ability to generate it.
This is a real issue when trying to ingest data from kerberized data sources (SQL Server, Oracle) in enterprise environment where exposing simple authentication access is not an option due to IT policy issues.
In this PR I've added DB2 support (other supported databases will come in later PRs).
What this PR contains:
* Added `DB2ConnectionProvider`
* Added `DB2ConnectionProviderSuite`
* Added `DB2KrbIntegrationSuite` docker integration test
* Changed DB2 JDBC driver to use the latest (test scope only)
* Changed test table data type to a type which is supported by all the databases
* Removed double connection creation on test side
* Increased connection timeout in docker tests because DB2 docker takes quite a time to start
### Why are the changes needed?
Missing JDBC kerberos support.
### Does this PR introduce any user-facing change?
Yes, now user is able to connect to DB2 using kerberos.
### How was this patch tested?
* Additional + existing unit tests
* Additional + existing integration tests
* Test on cluster manually
Closes#28215 from gaborgsomogyi/SPARK-31272.
Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@apache.org>
### What changes were proposed in this pull request?
When loading DataFrames from JDBC datasource with Kerberos authentication, remote executors (yarn-client/cluster etc. modes) fail to establish a connection due to lack of Kerberos ticket or ability to generate it.
This is a real issue when trying to ingest data from kerberized data sources (SQL Server, Oracle) in enterprise environment where exposing simple authentication access is not an option due to IT policy issues.
In this PR I've added MariaDB support (other supported databases will come in later PRs).
What this PR contains:
* Introduced `SecureConnectionProvider` and added basic secure functionalities
* Added `MariaDBConnectionProvider`
* Added `MariaDBConnectionProviderSuite`
* Added `MariaDBKrbIntegrationSuite` docker integration test
* Added some missing code documentation
### Why are the changes needed?
Missing JDBC kerberos support.
### Does this PR introduce any user-facing change?
Yes, now user is able to connect to MariaDB using kerberos.
### How was this patch tested?
* Additional + existing unit tests
* Additional + existing integration tests
* Test on cluster manually
Closes#28019 from gaborgsomogyi/SPARK-31021.
Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@apache.org>
### What changes were proposed in this pull request?
- Add a UI test for Structured Streaming UI
- Fix the unsafe usages of `SimpleDateFormat` by using a ThreadLocal shared object.
- Use `start` to replace `submission` to be consistent with the API `StreamingQuery.start()`.
### Why are the changes needed?
Structured Streaming UI is missing UI tests.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
The new test.
Closes#27732 from zsxwing/ss-ui-test.
Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
This patch is to bump the master branch version to 3.1.0-SNAPSHOT.
### Why are the changes needed?
N/A
### Does this PR introduce any user-facing change?
N/A
### How was this patch tested?
N/A
Closes#27698 from gatorsmile/updateVersion.
Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
1. Revert "Preparing development version 3.0.1-SNAPSHOT": 56dcd79
2. Revert "Preparing Spark release v3.0.0-preview2-rc2": c216ef1
### Why are the changes needed?
Shouldn't change master.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
manual test:
https://github.com/apache/spark/compare/5de5e46..wangyum:revert-masterCloses#26915 from wangyum/revert-master.
Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Yuming Wang <wgyumg@gmail.com>
### What changes were proposed in this pull request?
Move some classes extending Scala collections into parallel source trees, to support 2.13; other minor collection-related modifications.
Modify some classes extending Scala collections to work with 2.13 as well as 2.12. In many cases, this means introducing parallel source trees, as the type hierarchy changed in ways that one class can't support both.
### Why are the changes needed?
To support building for Scala 2.13 in the future.
### Does this PR introduce any user-facing change?
There should be no behavior change.
### How was this patch tested?
Existing tests. Note that the 2.13 changes are not tested by the PR builder, of course. They compile in 2.13 but can't even be tested locally. Later, once the project can be compiled for 2.13, thus tested, it's possible the 2.13 implementations will need updates.
Closes#26728 from srowen/SPARK-30012.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
# What changes were proposed in this pull request?
This PR aims to relocate the following internal dependencies to compile `sql/core` without `-Phive-2.3` profile.
1. Move the `hive-storage-api` to `sql/core` which is using `hive-storage-api` really.
**BEFORE (sql/core compilation)**
```
$ ./build/mvn -DskipTests --pl sql/core --am compile
...
[ERROR] [Error] /Users/dongjoon/APACHE/spark/sql/core/v2.3/src/main/scala/org/apache/spark/sql/execution/datasources/orc/OrcFilters.scala:21: object hive is not a member of package org.apache.hadoop
...
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
```
**AFTER (sql/core compilation)**
```
$ ./build/mvn -DskipTests --pl sql/core --am compile
...
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 02:04 min
[INFO] Finished at: 2019-11-25T00:20:11-08:00
[INFO] ------------------------------------------------------------------------
```
2. For (1), add `commons-lang:commons-lang` test dependency to `spark-core` module to manage the dependency explicitly. Without this, `core` module fails to build the test classes.
```
$ ./build/mvn -DskipTests --pl core --am package -Phadoop-3.2
...
[INFO] --- scala-maven-plugin:4.3.0:testCompile (scala-test-compile-first) spark-core_2.12 ---
[INFO] Using incremental compilation using Mixed compile order
[INFO] Compiler bridge file: /Users/dongjoon/.sbt/1.0/zinc/org.scala-sbt/org.scala-sbt-compiler-bridge_2.12-1.3.1-bin_2.12.10__52.0-1.3.1_20191012T045515.jar
[INFO] Compiling 271 Scala sources and 26 Java sources to /spark/core/target/scala-2.12/test-classes ...
[ERROR] [Error] /spark/core/src/test/scala/org/apache/spark/util/PropertiesCloneBenchmark.scala:23: object lang is not a member of package org.apache.commons
[ERROR] [Error] /spark/core/src/test/scala/org/apache/spark/util/PropertiesCloneBenchmark.scala:49: not found: value SerializationUtils
[ERROR] two errors found
```
**BEFORE (commons-lang:commons-lang)**
The following is the previous `core` module's `commons-lang:commons-lang` dependency.
1. **branch-2.4**
```
$ mvn dependency:tree -Dincludes=commons-lang:commons-lang
[INFO] --- maven-dependency-plugin:3.0.2:tree (default-cli) spark-core_2.11 ---
[INFO] org.apache.spark:spark-core_2.11🫙2.4.5-SNAPSHOT
[INFO] \- org.spark-project.hive:hive-exec:jar:1.2.1.spark2:provided
[INFO] \- commons-lang:commons-lang:jar:2.6:compile
```
2. **v3.0.0-preview (-Phadoop-3.2)**
```
$ mvn dependency:tree -Dincludes=commons-lang:commons-lang -Phadoop-3.2
[INFO] --- maven-dependency-plugin:3.1.1:tree (default-cli) spark-core_2.12 ---
[INFO] org.apache.spark:spark-core_2.12🫙3.0.0-preview
[INFO] \- org.apache.hive:hive-storage-api:jar:2.6.0:compile
[INFO] \- commons-lang:commons-lang:jar:2.6:compile
```
3. **v3.0.0-preview(default)**
```
$ mvn dependency:tree -Dincludes=commons-lang:commons-lang
[INFO] --- maven-dependency-plugin:3.1.1:tree (default-cli) spark-core_2.12 ---
[INFO] org.apache.spark:spark-core_2.12🫙3.0.0-preview
[INFO] \- org.apache.hadoop:hadoop-client:jar:2.7.4:compile
[INFO] \- org.apache.hadoop:hadoop-common:jar:2.7.4:compile
[INFO] \- commons-lang:commons-lang:jar:2.6:compile
```
**AFTER (commons-lang:commons-lang)**
```
$ mvn dependency:tree -Dincludes=commons-lang:commons-lang
[INFO] --- maven-dependency-plugin:3.1.1:tree (default-cli) spark-core_2.12 ---
[INFO] org.apache.spark:spark-core_2.12🫙3.0.0-SNAPSHOT
[INFO] \- commons-lang:commons-lang:jar:2.6:test
```
Since we wanted to verify that this PR doesn't change `hive-1.2` profile, we merged
[SPARK-30005 Update `test-dependencies.sh` to check `hive-1.2/2.3` profile](a1706e2fa7) before this PR.
### Why are the changes needed?
- Apache Spark 2.4's `sql/core` is using `Apache ORC (nohive)` jars including shaded `hive-storage-api` to access ORC data sources.
- Apache Spark 3.0's `sql/core` is using `Apache Hive` jars directly. Previously, `-Phadoop-3.2` hid this `hive-storage-api` dependency. Now, we are using `-Phive-2.3` instead. As I mentioned [previously](https://github.com/apache/spark/pull/26619#issuecomment-556926064), this PR is required to compile `sql/core` module without `-Phive-2.3`.
- For `sql/hive` and `sql/hive-thriftserver`, it's natural that we need `-Phive-1.2` or `-Phive-2.3`.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
This will pass the Jenkins (with the dependency check and unit tests).
We need to check manually with `./build/mvn -DskipTests --pl sql/core --am compile`.
This closes#26657 .
Closes#26658 from dongjoon-hyun/SPARK-30015.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to add `io.netty.tryReflectionSetAccessible=true` to the testing configuration for JDK11 because this is an officially documented requirement of Apache Arrow.
Apache Arrow community documented this requirement at `0.15.0` ([ARROW-6206](https://github.com/apache/arrow/pull/5078)).
> #### For java 9 or later, should set "-Dio.netty.tryReflectionSetAccessible=true".
> This fixes `java.lang.UnsupportedOperationException: sun.misc.Unsafe or java.nio.DirectByteBuffer.(long, int) not available`. thrown by netty.
### Why are the changes needed?
After ARROW-3191, Arrow Java library requires the property `io.netty.tryReflectionSetAccessible` to be set to true for JDK >= 9. After https://github.com/apache/spark/pull/26133, JDK11 Jenkins job seem to fail.
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-3.2-jdk-11/676/
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-3.2-jdk-11/677/
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-maven-hadoop-3.2-jdk-11/678/
```scala
Previous exception in task:
sun.misc.Unsafe or java.nio.DirectByteBuffer.<init>(long, int) not available

io.netty.util.internal.PlatformDependent.directBuffer(PlatformDependent.java:473)

io.netty.buffer.NettyArrowBuf.getDirectBuffer(NettyArrowBuf.java:243)

io.netty.buffer.NettyArrowBuf.nioBuffer(NettyArrowBuf.java:233)

io.netty.buffer.ArrowBuf.nioBuffer(ArrowBuf.java:245)

org.apache.arrow.vector.ipc.message.ArrowRecordBatch.computeBodyLength(ArrowRecordBatch.java:222)

```
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins with JDK11.
Closes#26552 from dongjoon-hyun/SPARK-ARROW-JDK11.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
To push the built jars to maven release repository, we need to remove the 'SNAPSHOT' tag from the version name.
Made the following changes in this PR:
* Update all the `3.0.0-SNAPSHOT` version name to `3.0.0-preview`
* Update the sparkR version number check logic to allow jvm version like `3.0.0-preview`
**Please note those changes were generated by the release script in the past, but this time since we manually add tags on master branch, we need to manually apply those changes too.**
We shall revert the changes after 3.0.0-preview release passed.
### Why are the changes needed?
To make the maven release repository to accept the built jars.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
N/A
### What changes were proposed in this pull request?
To push the built jars to maven release repository, we need to remove the 'SNAPSHOT' tag from the version name.
Made the following changes in this PR:
* Update all the `3.0.0-SNAPSHOT` version name to `3.0.0-preview`
* Update the PySpark version from `3.0.0.dev0` to `3.0.0`
**Please note those changes were generated by the release script in the past, but this time since we manually add tags on master branch, we need to manually apply those changes too.**
We shall revert the changes after 3.0.0-preview release passed.
### Why are the changes needed?
To make the maven release repository to accept the built jars.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
N/A
Closes#26243 from jiangxb1987/3.0.0-preview-prepare.
Lead-authored-by: Xingbo Jiang <xingbo.jiang@databricks.com>
Co-authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Xingbo Jiang <xingbo.jiang@databricks.com>
Updating univocity-parsers version to 2.8.3, which adds support for multiple character delimiters
Moving univocity-parsers version to spark-parent pom dependencyManagement section
Adding new utility method to build multi-char delimiter string, which delegates to existing one
Adding tests for multiple character delimited CSV
### What changes were proposed in this pull request?
Adds support for parsing CSV data using multiple-character delimiters. Existing logic for converting the input delimiter string to characters was kept and invoked in a loop. Project dependencies were updated to remove redundant declaration of `univocity-parsers` version, and also to change that version to the latest.
### Why are the changes needed?
It is quite common for people to have delimited data, where the delimiter is not a single character, but rather a sequence of characters. Currently, it is difficult to handle such data in Spark (typically needs pre-processing).
### Does this PR introduce any user-facing change?
Yes. Specifying the "delimiter" option for the DataFrame read, and providing more than one character, will no longer result in an exception. Instead, it will be converted as before and passed to the underlying library (Univocity), which has accepted multiple character delimiters since 2.8.0.
### How was this patch tested?
The `CSVSuite` tests were confirmed passing (including new methods), and `sbt` tests for `sql` were executed.
Closes#26027 from jeff303/SPARK-24540.
Authored-by: Jeff Evans <jeffrey.wayne.evans@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
Scala 2.13 removes the parallel collections classes to a separate library, so first, this establishes a `scala-2.13` profile to bring it back, for future use.
However the library enables use of `.par` implicit conversions via a new class that is not in 2.12, which makes cross-building hard. This implements a suggested workaround from https://github.com/scala/scala-parallel-collections/issues/22 to avoid `.par` entirely.
### Why are the changes needed?
To compile for 2.13 and later to work with 2.13.
### Does this PR introduce any user-facing change?
Should not, no.
### How was this patch tested?
Existing tests.
Closes#25980 from srowen/SPARK-29296.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
Currently we are in a strange status that, some data source v2 interfaces(catalog related) are in sql/catalyst, some data source v2 interfaces(Table, ScanBuilder, DataReader, etc.) are in sql/core.
I don't see a reason to keep data source v2 API in 2 modules. If we should pick one module, I think sql/catalyst is the one to go.
Catalyst module already has some user-facing stuff like DataType, Row, etc. And we have to update `Analyzer` and `SessionCatalog` to support the new catalog plugin, which needs to be in the catalyst module.
This PR can solve the problem we have in https://github.com/apache/spark/pull/24246
## How was this patch tested?
existing tests
Closes#24416 from cloud-fan/move.
Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
## What changes were proposed in this pull request?
To make https://github.com/apache/spark/pull/23788 easy to review. This PR moves `OrcColumnVector.java`, `OrcShimUtils.scala`, `OrcFilters.scala` and `OrcFilterSuite.scala` to `sql/core/v1.2.1` and copies it to `sql/core/v2.3.4`.
## How was this patch tested?
manual tests
```shell
diff -urNa sql/core/v1.2.1 sql/core/v2.3.4
```
Closes#24119 from wangyum/SPARK-27182.
Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
## What changes were proposed in this pull request?
This PR makes Spark's default Scala version as 2.12, and Scala 2.11 will be the alternative version. This implies that Scala 2.12 will be used by our CI builds including pull request builds.
We'll update the Jenkins to include a new compile-only jobs for Scala 2.11 to ensure the code can be still compiled with Scala 2.11.
## How was this patch tested?
existing tests
Closes#22967 from dbtsai/scala2.12.
Authored-by: DB Tsai <d_tsai@apple.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
## What changes were proposed in this pull request?
Upgrade ASM to 7.x to support JDK11
## How was this patch tested?
Existing tests.
Closes#22953 from dbtsai/asm7.
Authored-by: DB Tsai <d_tsai@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
## What changes were proposed in this pull request?
This patch is to bump the master branch version to 3.0.0-SNAPSHOT.
## How was this patch tested?
N/A
Closes#22606 from gatorsmile/bump3.0.
Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
## What changes were proposed in this pull request?
In the dev list, we can still discuss whether the next version is 2.5.0 or 3.0.0. Let us first bump the master branch version to `2.5.0-SNAPSHOT`.
## How was this patch tested?
N/A
Closes#22426 from gatorsmile/bumpVersionMaster.
Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
## What changes were proposed in this pull request?
During upgrading Apache ORC to 1.5.2 ([SPARK-24576](https://issues.apache.org/jira/browse/SPARK-24576)), `sql/core` module overrides the exclusion rules of parent pom file and it causes published `spark-sql_2.1X` artifacts have incomplete exclusion rules ([SPARK-25019](https://issues.apache.org/jira/browse/SPARK-25019)). This PR fixes it by moving the newly added exclusion rule to the parent pom. This also fixes the sbt build hack introduced at that time.
## How was this patch tested?
Pass the existing dependency check and the tests.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#22003 from dongjoon-hyun/SPARK-25019.
## What changes were proposed in this pull request?
Upgrade Apache Avro from 1.7.7 to 1.8.2. The major new features:
1. More logical types. From the spec of 1.8.2 https://avro.apache.org/docs/1.8.2/spec.html#Logical+Types we can see comparing to [1.7.7](https://avro.apache.org/docs/1.7.7/spec.html#Logical+Types), the new version support:
- Date
- Time (millisecond precision)
- Time (microsecond precision)
- Timestamp (millisecond precision)
- Timestamp (microsecond precision)
- Duration
2. Single-object encoding: https://avro.apache.org/docs/1.8.2/spec.html#single_object_encoding
This PR aims to update Apache Spark to support these new features.
## How was this patch tested?
Unit test
Author: Gengliang Wang <gengliang.wang@databricks.com>
Closes#21761 from gengliangwang/upgrade_avro_1.8.
## What changes were proposed in this pull request?
This issue aims to upgrade Apache ORC library from 1.4.4 to 1.5.2 in order to bring the following benefits into Apache Spark.
- [ORC-91](https://issues.apache.org/jira/browse/ORC-91) Support for variable length blocks in HDFS (The current space wasted in ORC to padding is known to be 5%.)
- [ORC-344](https://issues.apache.org/jira/browse/ORC-344) Support for using Decimal64ColumnVector
In addition to that, Apache Hive 3.1 and 3.2 will use ORC 1.5.1 ([HIVE-19669](https://issues.apache.org/jira/browse/HIVE-19465)) and 1.5.2 ([HIVE-19792](https://issues.apache.org/jira/browse/HIVE-19792)) respectively. This will improve the compatibility between Apache Spark and Apache Hive by sharing the common library.
## How was this patch tested?
Pass the Jenkins with all existing tests.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#21582 from dongjoon-hyun/SPARK-24576.
## What changes were proposed in this pull request?
Upgrade ASM to 6.1 to support JDK9+
## How was this patch tested?
Existing tests.
Author: DB Tsai <d_tsai@apple.com>
Closes#21459 from dbtsai/asm.
## What changes were proposed in this pull request?
Remove `MaxPermSize` for `sql` module
## How was this patch tested?
Manually tested.
Author: Yuming Wang <yumwang@ebay.com>
Closes#20268 from wangyum/SPARK-19550-MaxPermSize.
## What changes were proposed in this pull request?
This patch bumps the master branch version to `2.4.0-SNAPSHOT`.
## How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#20222 from gatorsmile/bump24.
## What changes were proposed in this pull request?
There was a bug in Univocity Parser that causes the issue in SPARK-22516. This was fixed by upgrading from 2.5.4 to 2.5.9 version of the library :
**Executing**
```
spark.read.option("header","true").option("inferSchema", "true").option("multiLine", "true").option("comment", "g").csv("test_file_without_eof_char.csv").show()
```
**Before**
```
ERROR Executor: Exception in task 0.0 in stage 6.0 (TID 6)
com.univocity.parsers.common.TextParsingException: java.lang.IllegalArgumentException - Unable to skip 1 lines from line 2. End of input reached
...
Internal state when error was thrown: line=3, column=0, record=2, charIndex=31
at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:339)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:475)
at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anon$1.next(UnivocityParser.scala:281)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
```
**After**
```
+-------+-------+
|column1|column2|
+-------+-------+
| abc| def|
+-------+-------+
```
## How was this patch tested?
The already existing `CSVSuite.commented lines in CSV data` test was extended to parse the file also in multiline mode. The test input file was modified to also include a comment in the last line.
Author: smurakozi <smurakozi@gmail.com>
Closes#19906 from smurakozi/SPARK-22516.
## What changes were proposed in this pull request?
Set `-ea` and `-Xss4m` consistently for tests, to fix in particular:
```
OrderingSuite:
...
- GenerateOrdering with ShortType
*** RUN ABORTED ***
java.lang.StackOverflowError:
at org.codehaus.janino.CodeContext.flowAnalysis(CodeContext.java:370)
at org.codehaus.janino.CodeContext.flowAnalysis(CodeContext.java:541)
at org.codehaus.janino.CodeContext.flowAnalysis(CodeContext.java:541)
at org.codehaus.janino.CodeContext.flowAnalysis(CodeContext.java:541)
at org.codehaus.janino.CodeContext.flowAnalysis(CodeContext.java:541)
at org.codehaus.janino.CodeContext.flowAnalysis(CodeContext.java:541)
at org.codehaus.janino.CodeContext.flowAnalysis(CodeContext.java:541)
at org.codehaus.janino.CodeContext.flowAnalysis(CodeContext.java:541)
...
```
## How was this patch tested?
Existing tests. Manually verified it resolves the StackOverflowError this intends to resolve.
Author: Sean Owen <sowen@cloudera.com>
Closes#19820 from srowen/SPARK-22607.
## What changes were proposed in this pull request?
There was a bug in Univocity Parser that causes the issue in SPARK-20978. This was fixed as below:
```scala
val df = spark.read.schema("a string, b string, unparsed string").option("columnNameOfCorruptRecord", "unparsed").csv(Seq("a").toDS())
df.show()
```
**Before**
```
java.lang.NullPointerException
at scala.collection.immutable.StringLike$class.stripLineEnd(StringLike.scala:89)
at scala.collection.immutable.StringOps.stripLineEnd(StringOps.scala:29)
at org.apache.spark.sql.execution.datasources.csv.UnivocityParser.org$apache$spark$sql$execution$datasources$csv$UnivocityParser$$getCurrentInput(UnivocityParser.scala:56)
at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anonfun$org$apache$spark$sql$execution$datasources$csv$UnivocityParser$$convert$1.apply(UnivocityParser.scala:207)
at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anonfun$org$apache$spark$sql$execution$datasources$csv$UnivocityParser$$convert$1.apply(UnivocityParser.scala:207)
...
```
**After**
```
+---+----+--------+
| a| b|unparsed|
+---+----+--------+
| a|null| a|
+---+----+--------+
```
It was fixed in 2.5.0 and 2.5.4 was released. I guess it'd be safe to upgrade this.
## How was this patch tested?
Unit test added in `CSVSuite.scala`.
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#19113 from HyukjinKwon/bump-up-univocity.
## What changes were proposed in this pull request?
Like Parquet, this PR aims to depend on the latest Apache ORC 1.4 for Apache Spark 2.3. There are key benefits for Apache ORC 1.4.
- Stability: Apache ORC 1.4.0 has many fixes and we can depend on ORC community more.
- Maintainability: Reduce the Hive dependency and can remove old legacy code later.
Later, we can get the following two key benefits by adding new ORCFileFormat in SPARK-20728 (#17980), too.
- Usability: User can use ORC data sources without hive module, i.e, -Phive.
- Speed: Use both Spark ColumnarBatch and ORC RowBatch together. This will be faster than the current implementation in Spark.
## How was this patch tested?
Pass the jenkins.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#18640 from dongjoon-hyun/SPARK-21422.
## What changes were proposed in this pull request?
Taking over https://github.com/apache/spark/pull/18789 ; Closes#18789
Update Jackson to 2.6.7 uniformly, and some components to 2.6.7.1, to get some fixes and prep for Scala 2.12
## How was this patch tested?
Existing tests
Author: Sean Owen <sowen@cloudera.com>
Closes#18881 from srowen/SPARK-20433.
## What changes were proposed in this pull request?
**For moudle below:**
common/network-common
streaming
sql/core
sql/catalyst
**tests.jar will install or deploy twice.Like:**
`[DEBUG] Installing org.apache.spark:spark-streaming_2.11/maven-metadata.xml to /home/mi/.m2/repository/org/apache/spark/spark-streaming_2.11/maven-metadata-local.xml
[INFO] Installing /home/mi/Work/Spark/scala2.11/spark/streaming/target/spark-streaming_2.11-2.1.0-mdh2.1.0.1-SNAPSHOT-tests.jar to /home/mi/.m2/repository/org/apache/spark/spark-streaming_2.11/2.1.0-mdh2.1.0.1-SNAPSHOT/spark-streaming_2.11-2.1.0-mdh2.1.0.1-SNAPSHOT-tests.jar
[DEBUG] Skipped re-installing /home/mi/Work/Spark/scala2.11/spark/streaming/target/spark-streaming_2.11-2.1.0-mdh2.1.0.1-SNAPSHOT-tests.jar to /home/mi/.m2/repository/org/apache/spark/spark-streaming_2.11/2.1.0-mdh2.1.0.1-SNAPSHOT/spark-streaming_2.11-2.1.0-mdh2.1.0.1-SNAPSHOT-tests.jar, seems unchanged`
**The reason is below:**
`[DEBUG] (f) artifact = org.apache.spark:spark-streaming_2.11🫙2.1.0-mdh2.1.0.1-SNAPSHOT
[DEBUG] (f) attachedArtifacts = [org.apache.spark:spark-streaming_2.11:test-jar:tests:2.1.0-mdh2.1.0.1-SNAPSHOT, org.apache.spark:spark-streaming_2.11🫙tests:2.1.0-mdh2.1.0.1-SNAPSHOT, org.apache.spark:spark
-streaming_2.11:java-source:sources:2.1.0-mdh2.1.0.1-SNAPSHOT, org.apache.spark:spark-streaming_2.11:java-source:test-sources:2.1.0-mdh2.1.0.1-SNAPSHOT, org.apache.spark:spark-streaming_2.11:javadoc:javadoc:2.1.0
-mdh2.1.0.1-SNAPSHOT]`
when executing 'mvn deploy' to nexus during release.I will fail since release nexus can not be overrided.
## How was this patch tested?
Execute 'mvn clean install -Pyarn -Phadoop-2.6 -Phadoop-provided -DskipTests'
Author: zhoukang <zhoukang199191@gmail.com>
Closes#18745 from caneGuy/zhoukang/fix-installtwice.
## What changes were proposed in this pull request?
Integrate Apache Arrow with Spark to increase performance of `DataFrame.toPandas`. This has been done by using Arrow to convert data partitions on the executor JVM to Arrow payload byte arrays where they are then served to the Python process. The Python DataFrame can then collect the Arrow payloads where they are combined and converted to a Pandas DataFrame. Data types except complex, date, timestamp, and decimal are currently supported, otherwise an `UnsupportedOperation` exception is thrown.
Additions to Spark include a Scala package private method `Dataset.toArrowPayload` that will convert data partitions in the executor JVM to `ArrowPayload`s as byte arrays so they can be easily served. A package private class/object `ArrowConverters` that provide data type mappings and conversion routines. In Python, a private method `DataFrame._collectAsArrow` is added to collect Arrow payloads and a SQLConf "spark.sql.execution.arrow.enable" can be used in `toPandas()` to enable using Arrow (uses the old conversion by default).
## How was this patch tested?
Added a new test suite `ArrowConvertersSuite` that will run tests on conversion of Datasets to Arrow payloads for supported types. The suite will generate a Dataset and matching Arrow JSON data, then the dataset is converted to an Arrow payload and finally validated against the JSON data. This will ensure that the schema and data has been converted correctly.
Added PySpark tests to verify the `toPandas` method is producing equal DataFrames with and without pyarrow. A roundtrip test to ensure the pandas DataFrame produced by pyspark is equal to a one made directly with pandas.
Author: Bryan Cutler <cutlerb@gmail.com>
Author: Li Jin <ice.xelloss@gmail.com>
Author: Li Jin <li.jin@twosigma.com>
Author: Wes McKinney <wes.mckinney@twosigma.com>
Closes#18459 from BryanCutler/toPandas_with_arrow-SPARK-13534.
## What changes were proposed in this pull request?
Integrate Apache Arrow with Spark to increase performance of `DataFrame.toPandas`. This has been done by using Arrow to convert data partitions on the executor JVM to Arrow payload byte arrays where they are then served to the Python process. The Python DataFrame can then collect the Arrow payloads where they are combined and converted to a Pandas DataFrame. All non-complex data types are currently supported, otherwise an `UnsupportedOperation` exception is thrown.
Additions to Spark include a Scala package private method `Dataset.toArrowPayloadBytes` that will convert data partitions in the executor JVM to `ArrowPayload`s as byte arrays so they can be easily served. A package private class/object `ArrowConverters` that provide data type mappings and conversion routines. In Python, a public method `DataFrame.collectAsArrow` is added to collect Arrow payloads and an optional flag in `toPandas(useArrow=False)` to enable using Arrow (uses the old conversion by default).
## How was this patch tested?
Added a new test suite `ArrowConvertersSuite` that will run tests on conversion of Datasets to Arrow payloads for supported types. The suite will generate a Dataset and matching Arrow JSON data, then the dataset is converted to an Arrow payload and finally validated against the JSON data. This will ensure that the schema and data has been converted correctly.
Added PySpark tests to verify the `toPandas` method is producing equal DataFrames with and without pyarrow. A roundtrip test to ensure the pandas DataFrame produced by pyspark is equal to a one made directly with pandas.
Author: Bryan Cutler <cutlerb@gmail.com>
Author: Li Jin <ice.xelloss@gmail.com>
Author: Li Jin <li.jin@twosigma.com>
Author: Wes McKinney <wes.mckinney@twosigma.com>
Closes#15821 from BryanCutler/wip-toPandas_with_arrow-SPARK-13534.
## What changes were proposed in this pull request?
This PR aims to clarify some outdated comments that i found at **spark-catalyst** and **spark-sql** pom files. Maven bug still happening and in order to track it I have updated the issue link and also the status of the issue.
Author: Marcos P <mpenate@stratio.com>
Closes#18374 from mpenate/fix/mng-3559-comment.
## What changes were proposed in this pull request?
This pull-request exclusively includes the class splitting feature described in #16648. When code for a given class would grow beyond 1600k bytes, a private, nested sub-class is generated into which subsequent functions are inlined. Additional sub-classes are generated as the code threshold is met subsequent times. This code includes 3 changes:
1. Includes helper maps, lists, and functions for keeping track of sub-classes during code generation (included in the `CodeGenerator` class). These helper functions allow nested classes and split functions to be initialized/declared/inlined to the appropriate locations in the various projection classes.
2. Changes `addNewFunction` to return a string to support instances where a split function is inlined to a nested class and not the outer class (and so must be invoked using the class-qualified name). Uses of `addNewFunction` throughout the codebase are modified so that the returned name is properly used.
3. Removes instances of the `this` keyword when used on data inside generated classes. All state declared in the outer class is by default global and accessible to the nested classes. However, if a reference to global state in a nested class is prepended with the `this` keyword, it would attempt to reference state belonging to the nested class (which would not exist), rather than the correct variable belonging to the outer class.
## How was this patch tested?
Added a test case to the `GeneratedProjectionSuite` that increases the number of columns tested in various projections to a threshold that would previously have triggered a `JaninoRuntimeException` for the Constant Pool.
Note: This PR does not address the second Constant Pool issue with code generation (also mentioned in #16648): excess global mutable state. A second PR may be opened to resolve that issue.
Author: ALeksander Eskilson <alek.eskilson@cerner.com>
Closes#18075 from bdrillard/class_splitting_only.
### What changes were proposed in this pull request?
This PR is to support JDBC data type TIME WITH TIME ZONE. It can be converted to TIMESTAMP
In addition, before this PR, for unsupported data types, we simply output the type number instead of the type name.
```
java.sql.SQLException: Unsupported type 2014
```
After this PR, the message is like
```
java.sql.SQLException: Unsupported type TIMESTAMP_WITH_TIMEZONE
```
- Also upgrade the H2 version to `1.4.195` which has the type fix for "TIMESTAMP WITH TIMEZONE". However, it is not fully supported. Thus, we capture the exception, but we still need it to partially test the support of "TIMESTAMP WITH TIMEZONE", because Docker tests are not regularly run.
### How was this patch tested?
Added test cases.
Author: Xiao Li <gatorsmile@gmail.com>
Closes#17835 from gatorsmile/h2.
## What changes were proposed in this pull request?
sq/core module currently declares asm as a test scope dependency. Transitively it should actually be a normal dependency since the actual core module defines it. This occasionally confuses IntelliJ.
## How was this patch tested?
N/A - This is a build change.
Author: Reynold Xin <rxin@databricks.com>
Closes#17574 from rxin/SPARK-20264.