Commit graph

8058 commits

Author SHA1 Message Date
Michael Armbrust 39db1bfdab [SQL] Update SQL Programming Guide
Author: Michael Armbrust <michael@databricks.com>
Author: Yin Huai <huai@cse.ohio-state.edu>

Closes #2258 from marmbrus/sqlDocUpdate and squashes the following commits:

f3d450b [Michael Armbrust] fix brackets
bea3bfa [Michael Armbrust] Davies suggestions
3a29fe2 [Michael Armbrust] tighten visibility
a71aa36 [Michael Armbrust] Draft of doc updates
52932c0 [Michael Armbrust] Merge remote-tracking branch 'origin/master' into sqlDocUpdate
1e8c849 [Yin Huai] Update the example used for applySchema.
9457c39 [Yin Huai] Update doc.
31ba240 [Yin Huai] Merge remote-tracking branch 'upstream/master' into dataTypeDoc
29bc668 [Yin Huai] Draft doc for data type and schema APIs.
2014-09-07 21:34:46 -04:00
Eric Liang 6754570d83 [SPARK-3394] [SQL] Fix crash in TakeOrdered when limit is 0
This resolves https://issues.apache.org/jira/browse/SPARK-3394

Author: Eric Liang <ekl@google.com>

Closes #2264 from ericl/spark-3394 and squashes the following commits:

c87355b [Eric Liang] refactor
bfb6140 [Eric Liang] change RDD takeOrdered instead
7a51528 [Eric Liang] fix takeordered when limit = 0
2014-09-07 17:57:59 -07:00
Reynold Xin 3fb57a0ab3 [SPARK-3353] parent stage should have lower stage id.
Previously parent stages had higher stage id, but parent stages are executed first. This pull request changes the behavior so parent stages would have lower stage id.

For example, command:
```scala
sc.parallelize(1 to 10).map(x=>(x,x)).reduceByKey(_+_).count
```
breaks down into 2 stages.

The old web UI:
![screen shot 2014-09-04 at 12 42 44 am](https://cloud.githubusercontent.com/assets/323388/4146177/60fb4f42-3407-11e4-819f-853eb0e22b25.png)

Web UI with this patch:
![screen shot 2014-09-04 at 12 44 55 am](https://cloud.githubusercontent.com/assets/323388/4146178/62e08e62-3407-11e4-867b-a36b10534464.png)

Author: Reynold Xin <rxin@apache.org>

Closes #2273 from rxin/lower-stage-id and squashes the following commits:

abbb4c6 [Reynold Xin] Fixed SparkListenerSuite.
0e02379 [Reynold Xin] Updated DAGSchedulerSuite.
54ccea3 [Reynold Xin] [SPARK-3353] parent stage should have lower stage id.
2014-09-06 19:06:30 -07:00
Davies Liu 110fb8b24d [SPARK-2334] fix AttributeError when call PipelineRDD.id()
The underline JavaRDD for PipelineRDD is created lazily, it's delayed until call _jrdd.

The id of JavaRDD is cached as `_id`, it saves a RPC call in py4j for later calls.

closes #1276

Author: Davies Liu <davies.liu@gmail.com>

Closes #2296 from davies/id and squashes the following commits:

e197958 [Davies Liu] fix style
9721716 [Davies Liu] fix id of PipelineRDD
2014-09-06 16:12:29 -07:00
GuoQiang Li 21a1e1bb89 [SPARK-3273][SPARK-3301]We should read the version information from the same place
Author: GuoQiang Li <witgo@qq.com>

Closes #2175 from witgo/SPARK-3273 and squashes the following commits:

cf9c65a [GuoQiang Li] We should read the version information from the same place
2a44e2f [GuoQiang Li] The spark version in the welcome message of pyspark is not correct
2014-09-06 15:08:43 -07:00
GuoQiang Li 607ae39c22 [SPARK-3397] Bump pom.xml version number of master branch to 1.2.0-SNAPSHOT
Author: GuoQiang Li <witgo@qq.com>

Closes #2268 from witgo/SPARK-3397 and squashes the following commits:

eaf913f [GuoQiang Li] Bump pom.xml version number of master branch to 1.2.0-SNAPSHOT
2014-09-06 15:04:50 -07:00
Holden Karau da35330e83 Spark-3406 add a default storage level to python RDD persist API
Author: Holden Karau <holden@pigscanfly.ca>

Closes #2280 from holdenk/SPARK-3406-Python-RDD-persist-api-does-not-have-default-storage-level and squashes the following commits:

33eaade [Holden Karau] As Josh pointed out, sql also override persist. Make persist behave the same as in the underlying RDD as well
e658227 [Holden Karau] Fix the test I added
e95a6c5 [Holden Karau] The Python persist function did not have a default storageLevel unlike the Scala API. Noticed this issue because we got a bug report back from the book where we had documented it as if it was the same as the Scala API
2014-09-06 14:49:25 -07:00
Tathagata Das baff7e9361 [SPARK-2419][Streaming][Docs] More updates to the streaming programming guide
- Improvements to the kinesis integration guide from @cfregly
- More information about unified input dstreams in main guide

Author: Tathagata Das <tathagata.das1565@gmail.com>
Author: Chris Fregly <chris@fregly.com>

Closes #2307 from tdas/streaming-doc-fix1 and squashes the following commits:

ec40b5d [Tathagata Das] Updated figure with kinesis
fdb9c5e [Tathagata Das] Fixed style issues with kinesis guide
036d219 [Chris Fregly] updated kinesis docs and added an arch diagram
24f622a [Tathagata Das] More modifications.
2014-09-06 14:46:43 -07:00
Nicholas Chammas 0c681dd6b2 [EC2] don't duplicate default values
This PR makes two minor changes to the `spark-ec2` script:

1. The script's input parameter default values are duplicated into the help text. This is unnecessary. This PR replaces the duplicated info with the appropriate `optparse`  placeholder.
2. The default Spark version currently needs to be updated by hand during each release, which is known to be a faulty process. This PR places that default value in an easy-to-spot place.

Author: Nicholas Chammas <nicholas.chammas@gmail.com>

Closes #2290 from nchammas/spark-ec2-default-version and squashes the following commits:

0c6d3bb [Nicholas Chammas] don't duplicate default values
2014-09-06 14:39:29 -07:00
Reynold Xin 1b9001f78d [SPARK-3409][SQL] Avoid pulling in Exchange operator itself in Exchange's closures.
This is a tiny teeny optimization to move the if check of sortBasedShuffledOn to outside the closures so the closures don't need to pull in the entire Exchange operator object.

Author: Reynold Xin <rxin@apache.org>

Closes #2282 from rxin/SPARK-3409 and squashes the following commits:

1de3f88 [Reynold Xin] [SPARK-3409][SQL] Avoid pulling in Exchange operator itself in Exchange's closures.
2014-09-06 00:33:00 -07:00
Nicholas Chammas 9422c4ee0e [SPARK-3361] Expand PEP 8 checks to include EC2 script and Python examples
This PR resolves [SPARK-3361](https://issues.apache.org/jira/browse/SPARK-3361) by expanding the PEP 8 checks to cover the remaining Python code base:
* The EC2 script
* All Python / PySpark examples

Author: Nicholas Chammas <nicholas.chammas@gmail.com>

Closes #2297 from nchammas/pep8-rulez and squashes the following commits:

1e5ac9a [Nicholas Chammas] PEP 8 fixes to Python examples
c3dbeff [Nicholas Chammas] PEP 8 fixes to EC2 script
65ef6e8 [Nicholas Chammas] expand PEP 8 checks
2014-09-05 23:08:54 -07:00
Nicholas Chammas 19f61c1659 [Build] suppress curl/wget progress bars
In the Jenkins console output, `curl` gives us mountains of `#` symbols as it tries to show its download progress.

![noise from curl in Jenkins output](http://i.imgur.com/P2E7yUw.png)

I don't think this is useful so I've changed things to suppress these progress bars. If there is actually some use to this, feel free to reject this proposal.

Author: Nicholas Chammas <nicholas.chammas@gmail.com>

Closes #2279 from nchammas/trim-test-output and squashes the following commits:

14a720c [Nicholas Chammas] suppress curl/wget progress bars
2014-09-05 21:46:45 -07:00
Andrew Ash ba5bcaddec SPARK-3211 .take() is OOM-prone with empty partitions
Instead of jumping straight from 1 partition to all partitions, do exponential
growth and double the number of partitions to attempt each time instead.

Fix proposed by Paul Nepywoda

Author: Andrew Ash <andrew@andrewash.com>

Closes #2117 from ash211/SPARK-3211 and squashes the following commits:

8b2299a [Andrew Ash] Quadruple instead of double for a minor speedup
e5f7e4d [Andrew Ash] Update comment to better reflect what we're doing
09a27f7 [Andrew Ash] Update PySpark to be less OOM-prone as well
3a156b8 [Andrew Ash] SPARK-3211 .take() is OOM-prone with empty partitions
2014-09-05 18:52:05 -07:00
Kousuke Saruta 7ff8c45d71 [SPARK-3399][PySpark] Test for PySpark should ignore HADOOP_CONF_DIR and YARN_CONF_DIR
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #2270 from sarutak/SPARK-3399 and squashes the following commits:

7613be6 [Kousuke Saruta] Modified pyspark script to ignore environment variables YARN_CONF_DIR and HADOOP_CONF_DIR while testing
2014-09-05 11:07:00 -07:00
Thomas Graves 62c5576099 [SPARK-3375] spark on yarn container allocation issues
If yarn doesn't get the containers immediately it stops asking for them and the yarn application hangs with never getting any executors.

The issue here is that we are sending the number of containers as 0 after we send the original one of X. on the yarn side this clears out the original request.

For a ping we should just send empty asks.

Author: Thomas Graves <tgraves@apache.org>

Closes #2275 from tgravescs/SPARK-3375 and squashes the following commits:

74b6820 [Thomas Graves] send empty resource requests when we aren't asking for containers
2014-09-05 09:56:22 -05:00
Thomas Graves 51b53a758c [SPARK-3260] yarn - pass acls along with executor launch
Pass along the acl settings when we launch a container so that they can be applied to viewing the logs on a running NodeManager.

Author: Thomas Graves <tgraves@apache.org>

Closes #2185 from tgravescs/SPARK-3260 and squashes the following commits:

6f94b5a [Thomas Graves] make unit test more robust
28b9dd3 [Thomas Graves] yarn - pass acls along with executor launch
2014-09-05 09:54:40 -05:00
Nicholas Chammas 6a37ed838b [Docs] fix minor MLlib case typo
Also make the list of features consistent in style.

Author: Nicholas Chammas <nicholas.chammas@gmail.com>

Closes #2278 from nchammas/patch-1 and squashes the following commits:

56df319 [Nicholas Chammas] [Docs] fix minor MLlib case typo
2014-09-04 23:37:06 -07:00
Reynold Xin 1725a1a5d1 [SPARK-3391][EC2] Support attaching up to 8 EBS volumes.
Please merge this at the same time as https://github.com/mesos/spark-ec2/pull/66

Author: Reynold Xin <rxin@apache.org>

Closes #2260 from rxin/ec2-ebs-vol and squashes the following commits:

b9527d9 [Reynold Xin] Removed io1 ebs type.
bf9c403 [Reynold Xin] Made EBS volume type configurable.
c8e25ea [Reynold Xin] Support up to 8 EBS volumes.
adf4f2e [Reynold Xin] Revert git repo change.
020c542 [Reynold Xin] [SPARK-3391] Support attaching more than 1 EBS volumes.
2014-09-04 23:34:58 -07:00
Cheng Hao 1904bac38d [SPARK-3392] [SQL] Show value spark.sql.shuffle.partitions for mapred.reduce.tasks
This is a tiny fix for getting the value of "mapred.reduce.tasks", which make more sense for the hive user.
As well as the command "set -v", which should output verbose information for all of the key/values.

Author: Cheng Hao <hao.cheng@intel.com>

Closes #2261 from chenghao-intel/set_mapreduce_tasks and squashes the following commits:

653858a [Cheng Hao] show value spark.sql.shuffle.partitions for mapred.reduce.tasks
2014-09-04 19:16:12 -07:00
Cheng Lian ee575f12f2 [SPARK-2219][SQL] Added support for the "add jar" command
Adds logical and physical command classes for the "add jar" command.

Note that this PR conflicts with and should be merged after #2215.

Author: Cheng Lian <lian.cs.zju@gmail.com>

Closes #2242 from liancheng/add-jar and squashes the following commits:

e43a2f1 [Cheng Lian] Updates AddJar according to conventions introduced in #2215
b99107f [Cheng Lian] Added test case for ADD JAR command
095b2c7 [Cheng Lian] Also forward ADD JAR command to Hive
9be031b [Cheng Lian] Trims Jar path string
8195056 [Cheng Lian] Added support for the "add jar" command
2014-09-04 18:47:45 -07:00
Liang-Chi Hsieh 3eb6ef316c [SPARK-3310][SQL] Directly use currentTable without unnecessary implicit conversion
We can directly use currentTable there without unnecessary implicit conversion.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #2203 from viirya/direct_use_inmemoryrelation and squashes the following commits:

4741d02 [Liang-Chi Hsieh] Merge remote-tracking branch 'upstream/master' into direct_use_inmemoryrelation
b671f67 [Liang-Chi Hsieh] Can directly use currentTable there without unnecessary implicit conversion.
2014-09-04 18:46:09 -07:00
Matei Zaharia 90b17a70c7 Manually close old PR
Closes #544
2014-09-04 17:51:14 -07:00
Matei Zaharia 0fdf2f5a18 Manually close old PR
Closes #1588
2014-09-04 17:47:16 -07:00
Kousuke Saruta dc1ba9e9fc [SPARK-3378] [DOCS] Replace the word "SparkSQL" with right word "Spark SQL"
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #2251 from sarutak/SPARK-3378 and squashes the following commits:

0bfe234 [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into SPARK-3378
bb5938f [Kousuke Saruta] Replaced rest of "SparkSQL" with "Spark SQL"
6df66de [Kousuke Saruta] Replaced "SparkSQL" with "Spark SQL"
2014-09-04 15:06:08 -07:00
Kousuke Saruta 4feb46c5fe [SPARK-3401][PySpark] Wrong usage of tee command in python/run-tests
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #2272 from sarutak/SPARK-3401 and squashes the following commits:

2b35a59 [Kousuke Saruta] Modified wrong usage of tee command in python/run-tests
2014-09-04 10:29:11 -07:00
GuoQiang Li 905861906e [Minor]Remove extra semicolon in FlumeStreamSuite.scala
Author: GuoQiang Li <witgo@qq.com>

Closes #2265 from witgo/FlumeStreamSuite and squashes the following commits:

6c99e6e [GuoQiang Li] Remove extra semicolon in FlumeStreamSuite.scala
2014-09-04 10:28:23 -07:00
Ankur Dave 00362dac97 [HOTFIX] [SPARK-3400] Revert 9b225ac "fix GraphX EdgeRDD zipPartitions"
9b225ac307 has been causing GraphX tests
to fail nondeterministically, which is blocking development for others.

Author: Ankur Dave <ankurdave@gmail.com>

Closes #2271 from ankurdave/SPARK-3400 and squashes the following commits:

10c2a97 [Ankur Dave] [HOTFIX] [SPARK-3400] Revert 9b225ac "fix GraphX EdgeRDD zipPartitions"
2014-09-03 23:49:47 -07:00
Kousuke Saruta 1bed0a3869 [SPARK-3372] [MLlib] MLlib doesn't pass maven build / checkstyle due to multi-byte character contained in Gradient.scala
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #2248 from sarutak/SPARK-3372 and squashes the following commits:

73a28b8 [Kousuke Saruta] Replaced UTF-8 hyphen with ascii hyphen
2014-09-03 20:47:00 -07:00
Matthew Farrellee 7c6e71f05f [SPARK-2435] Add shutdown hook to pyspark
Author: Matthew Farrellee <matt@redhat.com>

Closes #2183 from mattf/SPARK-2435 and squashes the following commits:

ee0ee99 [Matthew Farrellee] [SPARK-2435] Add shutdown hook to pyspark
2014-09-03 19:37:37 -07:00
Davies Liu c5cbc49233 [SPARK-3335] [SQL] [PySpark] support broadcast in Python UDF
After this patch, broadcast can be used in Python UDF.

Author: Davies Liu <davies.liu@gmail.com>

Closes #2243 from davies/udf_broadcast and squashes the following commits:

7b88861 [Davies Liu] support broadcast in UDF
2014-09-03 19:08:39 -07:00
Cheng Lian 248067adbe [SPARK-2961][SQL] Use statistics to prune batches within cached partitions
This PR is based on #1883 authored by marmbrus. Key differences:

1. Batch pruning instead of partition pruning

   When #1883 was authored, batched column buffer building (#1880) hadn't been introduced. This PR combines these two and provide partition batch level pruning, which leads to smaller memory footprints and can generally skip more elements. The cost is that the pruning predicates are evaluated more frequently (partition number multiplies batch number per partition).

1. More filters are supported

   Filter predicates consist of `=`, `<`, `<=`, `>`, `>=` and their conjunctions and disjunctions are supported.

Author: Cheng Lian <lian.cs.zju@gmail.com>

Closes #2188 from liancheng/in-mem-batch-pruning and squashes the following commits:

68cf019 [Cheng Lian] Marked sqlContext as @transient
4254f6c [Cheng Lian] Enables in-memory partition pruning in PartitionBatchPruningSuite
3784105 [Cheng Lian] Overrides InMemoryColumnarTableScan.sqlContext
d2a1d66 [Cheng Lian] Disables in-memory partition pruning by default
062c315 [Cheng Lian] HiveCompatibilitySuite code cleanup
16b77bf [Cheng Lian] Fixed pruning predication conjunctions and disjunctions
16195c5 [Cheng Lian] Enabled both disjunction and conjunction
89950d0 [Cheng Lian] Worked around Scala style check
9c167f6 [Cheng Lian] Minor code cleanup
3c4d5c7 [Cheng Lian] Minor code cleanup
ea59ee5 [Cheng Lian] Renamed PartitionSkippingSuite to PartitionBatchPruningSuite
fc517d0 [Cheng Lian] More test cases
1868c18 [Cheng Lian] Code cleanup, bugfix, and adding tests
cb76da4 [Cheng Lian] Added more predicate filters, fixed table scan stats for testing purposes
385474a [Cheng Lian] Merge branch 'inMemStats' into in-mem-batch-pruning
2014-09-03 18:59:26 -07:00
Cheng Lian f48420fde5 [SPARK-2973][SQL] Lightweight SQL commands without distributed jobs when calling .collect()
By overriding `executeCollect()` in physical plan classes of all commands, we can avoid to kick off a distributed job when collecting result of a SQL command, e.g. `sql("SET").collect()`.

Previously, `Command.sideEffectResult` returns a `Seq[Any]`, and the `execute()` method in sub-classes of `Command` typically convert that to a `Seq[Row]` then parallelize it to an RDD. Now with this PR, `sideEffectResult` is required to return a `Seq[Row]` directly, so that `executeCollect()` can directly leverage that and be factored to the `Command` parent class.

Author: Cheng Lian <lian.cs.zju@gmail.com>

Closes #2215 from liancheng/lightweight-commands and squashes the following commits:

3fbef60 [Cheng Lian] Factored execute() method of physical commands to parent class Command
5a0e16c [Cheng Lian] Passes test suites
e0e12e9 [Cheng Lian] Refactored Command.sideEffectResult and Command.executeCollect
995bdd8 [Cheng Lian] Cleaned up DescribeHiveTableCommand
542977c [Cheng Lian] Avoids confusion between logical and physical plan by adding package prefixes
55b2aa5 [Cheng Lian] Avoids distributed jobs when execution SQL commands
2014-09-03 18:57:20 -07:00
Kousuke Saruta 4bba10c41a [SPARK-3233] Executor never stop its SparnEnv, BlockManager, ConnectionManager etc.
Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #2138 from sarutak/SPARK-3233 and squashes the following commits:

c0205b7 [Kousuke Saruta] Merge branch 'SPARK-3233' of github.com:sarutak/spark into SPARK-3233
064679d [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into SPARK-3233
d3005fd [Kousuke Saruta] Modified Class definition format of BlockManagerMaster
039b747 [Kousuke Saruta] Modified style
889e2d1 [Kousuke Saruta] Modified BlockManagerMaster to be able to be past isDriver flag
4da8535 [Kousuke Saruta] Modified BlockManagerMaster#stop to send StopBlockManagerMaster message when sender is Driver
6518c3a [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into SPARK-3233
d5ab19a [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into SPARK-3233
6bce25c [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into SPARK-3233
6058a58 [Kousuke Saruta] Modified Executor not to invoke SparkEnv#stop in local mode
e5ad9d3 [Kousuke Saruta] Modified Executor to stop SparnEnv at the end of itself
2014-09-03 18:42:01 -07:00
scwf e08ea7393d [SPARK-3303][core] fix SparkContextSchedulerCreationSuite test error
run test with the master branch with this command when mesos native lib is set
sbt/sbt -Phive "test-only org.apache.spark.SparkContextSchedulerCreationSuite"

get this error:
[info] SparkContextSchedulerCreationSuite:
[info] - bad-master
[info] - local
[info] - local-*
[info] - local-n
[info] - local--n-failures
[info] - local-n-failures
[info] - bad-local-n
[info] - bad-local-n-failures
[info] - local-default-parallelism
[info] - simr
[info] - local-cluster
[info] - yarn-cluster
[info] - yarn-standalone
[info] - yarn-client
[info] - mesos fine-grained
[info] - mesos coarse-grained ** FAILED ***
[info] Executor Spark home `spark.mesos.executor.home` is not set!

Since `executorSparkHome` only used in `createCommand`, move `val executorSparkHome...` to `createCommand` to fix this issue.

Author: scwf <wangfei1@huawei.com>
Author: wangfei <wangfei_hello@126.com>

Closes #2199 from scwf/SparkContextSchedulerCreationSuite and squashes the following commits:

ef1de22 [scwf] fix code fomate
19d26f3 [scwf] fix conflict
d9a8a60 [wangfei] fix SparkContextSchedulerCreationSuite test error
2014-09-03 18:39:13 -07:00
Tathagata Das a522407928 [SPARK-2419][Streaming][Docs] Updates to the streaming programming guide
Updated the main streaming programming guide, and also added source-specific guides for Kafka, Flume, Kinesis.

Author: Tathagata Das <tathagata.das1565@gmail.com>
Author: Jacek Laskowski <jacek@japila.pl>

Closes #2254 from tdas/streaming-doc-fix and squashes the following commits:

e45c6d7 [Jacek Laskowski] More fixes from an old PR
5125316 [Tathagata Das] Fixed links
dc02f26 [Tathagata Das] Refactored streaming kinesis guide and made many other changes.
acbc3e3 [Tathagata Das] Fixed links between streaming guides.
cb7007f [Tathagata Das] Added Streaming + Flume integration guide.
9bd9407 [Tathagata Das] Updated streaming programming guide with additional information from SPARK-2419.
2014-09-03 17:38:01 -07:00
Liang-Chi Hsieh 996b7434ee [SPARK-3345] Do correct parameters for ShuffleFileGroup
In the method `newFileGroup` of class `FileShuffleBlockManager`, the parameters for creating new `ShuffleFileGroup` object is in wrong order.

Because in current codes, the parameters `shuffleId` and `fileId` are not used. So it doesn't cause problem now. However it should be corrected for readability and avoid future problem.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #2235 from viirya/correct_shufflefilegroup_params and squashes the following commits:

fe72567 [Liang-Chi Hsieh] Do correct parameters for ShuffleFileGroup.
2014-09-03 17:04:53 -07:00
Andrew Or 2784822e4c [Minor] Fix outdated Spark version
This is causing the event logs to include a file called SPARK_VERSION_1.0.0, which is not accurate.

Author: Andrew Or <andrewor14@gmail.com>
Author: andrewor14 <andrewor14@gmail.com>

Closes #2255 from andrewor14/spark-version and squashes the following commits:

1fbdfe9 [andrewor14] Snapshot
805a1c8 [Andrew Or] JK. Update Spark version to 1.2.0 instead.
bffbaab [Andrew Or] Update Spark version to 1.1.0
2014-09-03 16:58:19 -07:00
Marcelo Vanzin f2b5b619a9 [SPARK-3388] Expose aplication ID in ApplicationStart event, use it in history server.
This change exposes the application ID generated by the Spark Master, Mesos or Yarn
via the SparkListenerApplicationStart event. It then uses that information to expose the
application via its ID in the history server, instead of using the internal directory name
generated by the event logger as an application id. This allows someone who knows
the application ID to easily figure out the URL for the application's entry in the HS, aside
from looking better.

In Yarn mode, this is used to generate a direct link from the RM application list to the
Spark history server entry (thus providing a fix for SPARK-2150).

Note this sort of assumes that the different managers will generate app ids that are
sufficiently different from each other that clashes will not occur.

Author: Marcelo Vanzin <vanzin@cloudera.com>

This patch had conflicts when merged, resolved by
Committer: Andrew Or <andrewor14@gmail.com>

Closes #1218 from vanzin/yarn-hs-link-2 and squashes the following commits:

2d19f3c [Marcelo Vanzin] Review feedback.
6706d3a [Marcelo Vanzin] Implement applicationId() in base classes.
56fe42e [Marcelo Vanzin] Fix cluster mode history address, plus a cleanup.
44112a8 [Marcelo Vanzin] Merge branch 'master' into yarn-hs-link-2
8278316 [Marcelo Vanzin] Merge branch 'master' into yarn-hs-link-2
a86bbcf [Marcelo Vanzin] Merge branch 'master' into yarn-hs-link-2
a0056e6 [Marcelo Vanzin] Unbreak test.
4b10cfd [Marcelo Vanzin] Merge branch 'master' into yarn-hs-link-2
cb0cab2 [Marcelo Vanzin] Merge branch 'master' into yarn-hs-link-2
25f2826 [Marcelo Vanzin] Add MIMA excludes.
f0ba90f [Marcelo Vanzin] Use BufferedIterator.
c90a08d [Marcelo Vanzin] Remove unused code.
3f8ec66 [Marcelo Vanzin] Review feedback.
21aa71b [Marcelo Vanzin] Fix JSON test.
b022bae [Marcelo Vanzin] Undo SparkContext cleanup.
c6d7478 [Marcelo Vanzin] Merge branch 'master' into yarn-hs-link-2
4e3483f [Marcelo Vanzin] Fix test.
57517b8 [Marcelo Vanzin] Review feedback. Mostly, more consistent use of Scala's Option.
311e49d [Marcelo Vanzin] Merge branch 'master' into yarn-hs-link-2
d35d86f [Marcelo Vanzin] Fix yarn backend after rebase.
36dc362 [Marcelo Vanzin] Don't use Iterator::takeWhile().
0afd696 [Marcelo Vanzin] Wait until master responds before returning from start().
abc4697 [Marcelo Vanzin] Make FsHistoryProvider keep a map of applications by id.
26b266e [Marcelo Vanzin] Use Mesos framework ID as Spark application ID.
b3f3664 [Marcelo Vanzin] [yarn] Make the RM link point to the app direcly in the HS.
2fb7de4 [Marcelo Vanzin] Expose the application ID in the ApplicationStart event.
ed10348 [Marcelo Vanzin] Expose application id to spark context.
2014-09-03 14:57:38 -07:00
Marcelo Vanzin ccc69e26ec [SPARK-2845] Add timestamps to block manager events.
These are not used by the UI but are useful when analysing the
logs from a spark job.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #654 from vanzin/bm-event-tstamp and squashes the following commits:

d5d6e66 [Marcelo Vanzin] Fix tests.
ec06218 [Marcelo Vanzin] Review feedback.
f134dbc [Marcelo Vanzin] Merge branch 'master' into bm-event-tstamp
b495b7c [Marcelo Vanzin] Merge branch 'master' into bm-event-tstamp
7d2fe9e [Marcelo Vanzin] Review feedback.
d6f381c [Marcelo Vanzin] Update tests added after patch was created.
45e3bf8 [Marcelo Vanzin] Fix unit test after merge.
b37a10f [Marcelo Vanzin] Use === in test assertions.
ef72824 [Marcelo Vanzin] Handle backwards compatibility with 1.0.0.
aca1151 [Marcelo Vanzin] Fix unit test to check new fields.
efdda8e [Marcelo Vanzin] Add timestamps to block manager events.
2014-09-03 14:47:11 -07:00
RJ Nowling e5d376801d [SPARK-3263][GraphX] Fix changes made to GraphGenerator.logNormalGraph in PR #720
PR #720 made multiple changes to GraphGenerator.logNormalGraph including:

* Replacing the call to functions for generating random vertices and edges with in-line implementations with different equations. Based on reading the Pregel paper, I believe the in-line functions are incorrect.
* Hard-coding of RNG seeds so that method now generates the same graph for a given number of vertices, edges, mu, and sigma -- user is not able to override seed or specify that seed should be randomly generated.
* Backwards-incompatible change to logNormalGraph signature with introduction of new required parameter.
* Failed to update scala docs and programming guide for API changes
* Added a Synthetic Benchmark in the examples.

This PR:
* Removes the in-line calls and calls original vertex / edge generation functions again
* Adds an optional seed parameter for deterministic behavior (when desired)
* Keeps the number of partitions parameter that was added.
* Keeps compatibility with the synthetic benchmark example
* Maintains backwards-compatible API

Author: RJ Nowling <rnowling@gmail.com>
Author: Ankur Dave <ankurdave@gmail.com>

Closes #2168 from rnowling/graphgenrand and squashes the following commits:

f1cd79f [Ankur Dave] Style fixes
e11918e [RJ Nowling] Fix bad comparisons in unit tests
785ac70 [RJ Nowling] Fix style error
c70868d [RJ Nowling] Fix logNormalGraph scala doc for seed
41fd1f8 [RJ Nowling] Fix logNormalGraph scala doc for seed
799f002 [RJ Nowling] Added test for different seeds for sampleLogNormal
43949ad [RJ Nowling] Added test for different seeds for generateRandomEdges
2faf75f [RJ Nowling] Added unit test for logNormalGraph
82f22397 [RJ Nowling] Add unit test for sampleLogNormal
b99cba9 [RJ Nowling] Make sampleLogNormal private to Spark (vs private) for unit testing
6803da1 [RJ Nowling] Add GraphGeneratorsSuite with test for generateRandomEdges
1c8fc44 [RJ Nowling] Connected components part of SynthBenchmark was failing to call count on RDD before printing
dfbb6dd [RJ Nowling] Fix parameter name in SynthBenchmark docs
b5eeb80 [RJ Nowling] Add optional seed parameter to SynthBenchmark and set default to randomly generate a seed
1ff8d30 [RJ Nowling] Fix bug in generateRandomEdges where numVertices instead of numEdges was used to control number of edges to generate
98bb73c [RJ Nowling] Add documentation for logNormalGraph parameters
d40141a [RJ Nowling] Fix style error
684804d [RJ Nowling] revert PR #720 which introduce errors in logNormalGraph and messed up seeding of RNGs.  Add user-defined optional seed for deterministic behavior
c183136 [RJ Nowling] Fix to deterministic GraphGenerators.logNormalGraph that allows generating graphs randomly using optional seed.
015010c [RJ Nowling] Fixed GraphGenerator logNormalGraph API to make backward-incompatible change in commit 894ecde04
2014-09-03 14:16:06 -07:00
Davies Liu 6481d27425 [SPARK-3309] [PySpark] Put all public API in __all__
Put all public API in __all__, also put them all in pyspark.__init__.py, then we can got all the documents for public API by `pydoc pyspark`. It also can be used by other programs (such as Sphinx or Epydoc) to generate only documents for public APIs.

Author: Davies Liu <davies.liu@gmail.com>

Closes #2205 from davies/public and squashes the following commits:

c6c5567 [Davies Liu] fix message
f7b35be [Davies Liu] put SchemeRDD, Row in pyspark.sql module
7e3016a [Davies Liu] add __all__ in mllib
6281b48 [Davies Liu] fix doc for SchemaRDD
6caab21 [Davies Liu] add public interfaces into pyspark.__init__.py
2014-09-03 11:49:45 -07:00
Marcelo Vanzin 6a72a36940 [SPARK-3187] [yarn] Cleanup allocator code.
Move all shared logic to the base YarnAllocator class, and leave
the version-specific logic in the version-specific module.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #2169 from vanzin/SPARK-3187 and squashes the following commits:

46c2826 [Marcelo Vanzin] Hide the privates.
4dc9c83 [Marcelo Vanzin] Actually release containers.
8b1a077 [Marcelo Vanzin] Changes to the Yarn alpha allocator.
f3f5f1d [Marcelo Vanzin] [SPARK-3187] [yarn] Cleanup allocator code.
2014-09-03 08:22:50 -05:00
Patrick Wendell c64cc435e2 SPARK-3358: [EC2] Switch back to HVM instances for m3.X.
During regression tests of Spark 1.1 we discovered perf issues with
PVM instances when running PySpark. This reverts a change added in #1156
which changed the default type for m3 instances to PVM.

Author: Patrick Wendell <pwendell@gmail.com>

Closes #2244 from pwendell/ec2-hvm and squashes the following commits:

1342d7e [Patrick Wendell] SPARK-3358: [EC2] Switch back to HVM instances for m3.X.
2014-09-02 21:30:09 -07:00
Liang-Chi Hsieh 24ab384018 [SPARK-3300][SQL] No need to call clear() and shorten build()
The function `ensureFreeSpace` in object `ColumnBuilder` clears old buffer before copying its content to new buffer. This PR fixes it.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #2195 from viirya/fix_buffer_clear and squashes the following commits:

792f009 [Liang-Chi Hsieh] no need to call clear(). use flip() instead of calling limit(), position() and rewind().
df2169f [Liang-Chi Hsieh] should clean old buffer after copying its content.
2014-09-02 20:51:25 -07:00
Cheng Lian 19d3e1e8e9 [SQL] Renamed ColumnStat to ColumnMetrics to avoid confusion between ColumnStats
Class names of these two are just too similar.

Author: Cheng Lian <lian.cs.zju@gmail.com>

Closes #2189 from liancheng/column-metrics and squashes the following commits:

8bb3b21 [Cheng Lian] Renamed ColumnStat to ColumnMetrics to avoid confusion between ColumnStats
2014-09-02 20:49:36 -07:00
Takuya UESHIN 0cd91f666d [SPARK-3341][SQL] The dataType of Sqrt expression should be DoubleType.
Author: Takuya UESHIN <ueshin@happy-camper.st>

Closes #2233 from ueshin/issues/SPARK-3341 and squashes the following commits:

e497320 [Takuya UESHIN] Fix data type of Sqrt expression.
2014-09-02 20:31:15 -07:00
luluorta 9b225ac307 [SPARK-2823][GraphX]fix GraphX EdgeRDD zipPartitions
If the users set “spark.default.parallelism” and the value is different with the EdgeRDD partition number, GraphX jobs will throw:
java.lang.IllegalArgumentException: Can't zip RDDs with unequal numbers of partitions

Author: luluorta <luluorta@gmail.com>

Closes #1763 from luluorta/fix-graph-zip and squashes the following commits:

8338961 [luluorta] fix GraphX EdgeRDD zipPartitions
2014-09-02 19:26:27 -07:00
Tathagata Das e9bb12bea9 [SPARK-1981][Streaming][Hotfix] Fixed docs related to kinesis
- Include kinesis in the unidocs
- Hide non-public classes from docs

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #2239 from tdas/kinesis-doc-fix and squashes the following commits:

156e20c [Tathagata Das] More fixes, based on PR comments.
e9a6c01 [Tathagata Das] Fixed docs related to kinesis
2014-09-02 19:02:48 -07:00
Larry Xiao aa7de128c5 [SPARK-2981][GraphX] EdgePartition1D Int overflow
minor fix
detail is here: https://issues.apache.org/jira/browse/SPARK-2981

Author: Larry Xiao <xiaodi@sjtu.edu.cn>

Closes #1902 from larryxiao/2981 and squashes the following commits:

88059a2 [Larry Xiao] [SPARK-2981][GraphX] EdgePartition1D Int overflow
2014-09-02 18:50:52 -07:00
uncleGen 7c9bbf1725 [SPARK-3123][GraphX]: override the "setName" function to set EdgeRDD's name manually just as VertexRDD does.
Author: uncleGen <hustyugm@gmail.com>

Closes #2033 from uncleGen/master_origin and squashes the following commits:

801994b [uncleGen] Update EdgeRDD.scala
2014-09-02 18:44:58 -07:00