Commit graph

20428 commits

Author SHA1 Message Date
Jen-Ming Chung 6273a711b6 [SPARK-21610][SQL] Corrupt records are not handled properly when creating a dataframe from a file
## What changes were proposed in this pull request?
```
echo '{"field": 1}
{"field": 2}
{"field": "3"}' >/tmp/sample.json
```

```scala
import org.apache.spark.sql.types._

val schema = new StructType()
  .add("field", ByteType)
  .add("_corrupt_record", StringType)

val file = "/tmp/sample.json"

val dfFromFile = spark.read.schema(schema).json(file)

scala> dfFromFile.show(false)
+-----+---------------+
|field|_corrupt_record|
+-----+---------------+
|1    |null           |
|2    |null           |
|null |{"field": "3"} |
+-----+---------------+

scala> dfFromFile.filter($"_corrupt_record".isNotNull).count()
res1: Long = 0

scala> dfFromFile.filter($"_corrupt_record".isNull).count()
res2: Long = 3
```
When the `requiredSchema` only contains `_corrupt_record`, the derived `actualSchema` is empty and the `_corrupt_record` are all null for all rows. This PR captures above situation and raise an exception with a reasonable workaround messag so that users can know what happened and how to fix the query.

## How was this patch tested?

Added test case.

Author: Jen-Ming Chung <jenmingisme@gmail.com>

Closes #18865 from jmchung/SPARK-21610.
2017-09-10 17:26:43 -07:00
Peter Szalai 520d92a191 [SPARK-20098][PYSPARK] dataType's typeName fix
## What changes were proposed in this pull request?
`typeName`  classmethod has been fixed by using type -> typeName map.

## How was this patch tested?
local build

Author: Peter Szalai <szalaipeti.vagyok@gmail.com>

Closes #17435 from szalai1/datatype-gettype-fix.
2017-09-10 17:47:45 +09:00
Jane Wang f76790557b [SPARK-4131] Support "Writing data into the filesystem from queries"
## What changes were proposed in this pull request?

This PR implements the sql feature:
INSERT OVERWRITE [LOCAL] DIRECTORY directory1
  [ROW FORMAT row_format] [STORED AS file_format]
  SELECT ... FROM ...

## How was this patch tested?
Added new unittests and also pulled the code to fb-spark so that we could test writing to hdfs directory.

Author: Jane Wang <janewang@fb.com>

Closes #18975 from janewangfb/port_local_directory.
2017-09-09 11:48:34 -07:00
Yanbo Liang e4d8f9a36a [MINOR][SQL] Correct DataFrame doc.
## What changes were proposed in this pull request?
Correct DataFrame doc.

## How was this patch tested?
Only doc change, no tests.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #19173 from yanboliang/df-doc.
2017-09-09 09:25:12 -07:00
Liang-Chi Hsieh 6b45d7e941 [SPARK-21954][SQL] JacksonUtils should verify MapType's value type instead of key type
## What changes were proposed in this pull request?

`JacksonUtils.verifySchema` verifies if a data type can be converted to JSON. For `MapType`, it now verifies the key type. However, in `JacksonGenerator`, when converting a map to JSON, we only care about its values and create a writer for the values. The keys in a map are treated as strings by calling `toString` on the keys.

Thus, we should change `JacksonUtils.verifySchema` to verify the value type of `MapType`.

## How was this patch tested?

Added tests.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #19167 from viirya/test-jacksonutils.
2017-09-09 19:10:52 +09:00
Andrew Ash 8a5eb50681 [SPARK-21941] Stop storing unused attemptId in SQLTaskMetrics
## What changes were proposed in this pull request?

In a driver heap dump containing 390,105 instances of SQLTaskMetrics this
would have saved me approximately 3.2MB of memory.

Since we're not getting any benefit from storing this unused value, let's
eliminate it until a future PR makes use of it.

## How was this patch tested?

Existing unit tests

Author: Andrew Ash <andrew@andrewash.com>

Closes #19153 from ash211/aash/trim-sql-listener.
2017-09-08 23:33:15 -07:00
Xin Ren 31c74fec24 [SPARK-19866][ML][PYSPARK] Add local version of Word2Vec findSynonyms for spark.ml: Python API
https://issues.apache.org/jira/browse/SPARK-19866

## What changes were proposed in this pull request?

Add Python API for findSynonymsArray matching Scala API.

## How was this patch tested?

Manual test
`./python/run-tests --python-executables=python2.7 --modules=pyspark-ml`

Author: Xin Ren <iamshrek@126.com>
Author: Xin Ren <renxin.ubc@gmail.com>
Author: Xin Ren <keypointt@users.noreply.github.com>

Closes #17451 from keypointt/SPARK-19866.
2017-09-08 12:09:00 -07:00
hyukjinkwon 8598d03a00 [SPARK-15243][ML][SQL][PYTHON] Add missing support for unicode in Param methods & functions in dataframe
## What changes were proposed in this pull request?

This PR proposes to support unicodes in Param methods in ML, other missed functions in DataFrame.

For example, this causes a `ValueError` in Python 2.x when param is a unicode string:

```python
>>> from pyspark.ml.classification import LogisticRegression
>>> lr = LogisticRegression()
>>> lr.hasParam("threshold")
True
>>> lr.hasParam(u"threshold")
Traceback (most recent call last):
 ...
    raise TypeError("hasParam(): paramName must be a string")
TypeError: hasParam(): paramName must be a string
```

This PR is based on https://github.com/apache/spark/pull/13036

## How was this patch tested?

Unit tests in `python/pyspark/ml/tests.py` and `python/pyspark/sql/tests.py`.

Author: hyukjinkwon <gurwls223@gmail.com>
Author: sethah <seth.hendrickson16@gmail.com>

Closes #17096 from HyukjinKwon/SPARK-15243.
2017-09-08 11:57:33 -07:00
Kazuaki Ishizaki 8a4f228dc0 [SPARK-21946][TEST] fix flaky test: "alter table: rename cached table" in InMemoryCatalogedDDLSuite
## What changes were proposed in this pull request?

This PR fixes flaky test `InMemoryCatalogedDDLSuite "alter table: rename cached table"`.
Since this test validates distributed DataFrame, the result should be checked by using `checkAnswer`. The original version used `df.collect().Seq` method that does not guaranty an order of each element of the result.

## How was this patch tested?

Use existing test case

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #19159 from kiszk/SPARK-21946.
2017-09-08 09:39:20 -07:00
Liang-Chi Hsieh 0dfc1ec59e [SPARK-21726][SQL][FOLLOW-UP] Check for structural integrity of the plan in Optimzer in test mode
## What changes were proposed in this pull request?

The condition in `Optimizer.isPlanIntegral` is wrong. We should always return `true` if not in test mode.

## How was this patch tested?

Manually test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #19161 from viirya/SPARK-21726-followup.
2017-09-08 20:21:37 +09:00
Wenchen Fan dbb824125d [SPARK-21936][SQL] backward compatibility test framework for HiveExternalCatalog
## What changes were proposed in this pull request?

`HiveExternalCatalog` is a semi-public interface. When creating tables, `HiveExternalCatalog` converts the table metadata to hive table format and save into hive metastore. It's very import to guarantee backward compatibility here, i.e., tables created by previous Spark versions should still be readable in newer Spark versions.

Previously we find backward compatibility issues manually, which is really easy to miss bugs. This PR introduces a test framework to automatically test `HiveExternalCatalog` backward compatibility, by downloading Spark binaries with different versions, and create tables with these Spark versions, and read these tables with current Spark version.

## How was this patch tested?

test-only change

Author: Wenchen Fan <wenchen@databricks.com>

Closes #19148 from cloud-fan/test.
2017-09-07 23:21:49 -07:00
Liang-Chi Hsieh 6e37524a1f [SPARK-21726][SQL] Check for structural integrity of the plan in Optimzer in test mode.
## What changes were proposed in this pull request?

We have many optimization rules now in `Optimzer`. Right now we don't have any checks in the optimizer to check for the structural integrity of the plan (e.g. resolved). When debugging, it is difficult to identify which rules return invalid plans.

It would be great if in test mode, we can check whether a plan is still resolved after the execution of each rule, so we can catch rules that return invalid plans.

## How was this patch tested?

Added tests.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #18956 from viirya/SPARK-21726.
2017-09-07 23:12:18 -07:00
liuxian f62b20f39c [SPARK-21949][TEST] Tables created in unit tests should be dropped after use
## What changes were proposed in this pull request?
 Tables should be dropped after use in unit tests.
## How was this patch tested?
N/A

Author: liuxian <liu.xian3@zte.com.cn>

Closes #19155 from 10110346/droptable.
2017-09-07 23:09:26 -07:00
Takuya UESHIN 57bc1e9eb4 [SPARK-21950][SQL][PYTHON][TEST] pyspark.sql.tests.SQLTests2 should stop SparkContext.
## What changes were proposed in this pull request?

`pyspark.sql.tests.SQLTests2` doesn't stop newly created spark context in the test and it might affect the following tests.
This pr makes `pyspark.sql.tests.SQLTests2` stop `SparkContext`.

## How was this patch tested?

Existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #19158 from ueshin/issues/SPARK-21950.
2017-09-08 14:26:07 +09:00
Dongjoon Hyun c26976fe14 [SPARK-21939][TEST] Use TimeLimits instead of Timeouts
Since ScalaTest 3.0.0, `org.scalatest.concurrent.Timeouts` is deprecated.
This PR replaces the deprecated one with `org.scalatest.concurrent.TimeLimits`.

```scala
-import org.scalatest.concurrent.Timeouts._
+import org.scalatest.concurrent.TimeLimits._
```

Pass the existing test suites.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #19150 from dongjoon-hyun/SPARK-21939.

Change-Id: I1a1b07f1b97e51e2263dfb34b7eaaa099b2ded5e
2017-09-08 09:31:13 +08:00
Dongjoon Hyun e00f1a1da1 [SPARK-13656][SQL] Delete spark.sql.parquet.cacheMetadata from SQLConf and docs
## What changes were proposed in this pull request?

Since [SPARK-15639](https://github.com/apache/spark/pull/13701), `spark.sql.parquet.cacheMetadata` and `PARQUET_CACHE_METADATA` is not used. This PR removes from SQLConf and docs.

## How was this patch tested?

Pass the existing Jenkins.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #19129 from dongjoon-hyun/SPARK-13656.
2017-09-07 16:26:56 -07:00
Sanket Chintapalli b9ab791a9e [SPARK-21890] Credentials not being passed to add the tokens
I observed this while running a oozie job trying to connect to hbase via spark.
It look like the creds are not being passed in thehttps://github.com/apache/spark/blob/branch-2.2/resource-managers/yarn/src/main/scala/org/apache/spark/deploy/yarn/security/HadoopFSCredentialProvider.scala#L53 for 2.2 release.
More Info as to why it fails on secure grid:
Oozie client gets the necessary tokens the application needs before launching. It passes those tokens along to the oozie launcher job (MR job) which will then actually call the Spark client to launch the spark app and pass the tokens along.
The oozie launcher job cannot get anymore tokens because all it has is tokens ( you can't get tokens with tokens, you need tgt or keytab).
The error here is because the launcher job runs the Spark Client to submit the spark job but the spark client doesn't see that it already has the hdfs tokens so it tries to get more, which ends with the exception.
There was a change with SPARK-19021 to generalize the hdfs credentials provider that changed it so we don't pass the existing credentials into the call to get tokens so it doesn't realize it already has the necessary tokens.

https://issues.apache.org/jira/browse/SPARK-21890
Modified to pass creds to get delegation tokens

Author: Sanket Chintapalli <schintap@yahoo-inc.com>

Closes #19140 from redsanket/SPARK-21890-master.
2017-09-07 11:25:24 -05:00
Dongjoon Hyun eea2b877cf [SPARK-21912][SQL] ORC/Parquet table should not create invalid column names
## What changes were proposed in this pull request?

Currently, users meet job abortions while creating or altering ORC/Parquet tables with invalid column names. We had better prevent this by raising **AnalysisException** with a guide to use aliases instead like Paquet data source tables.

**BEFORE**
```scala
scala> sql("CREATE TABLE orc1 USING ORC AS SELECT 1 `a b`")
17/09/04 13:28:21 ERROR Utils: Aborting task
java.lang.IllegalArgumentException: Error: : expected at the position 8 of 'struct<a b:int>' but ' ' is found.
17/09/04 13:28:21 ERROR FileFormatWriter: Job job_20170904132821_0001 aborted.
17/09/04 13:28:21 ERROR Executor: Exception in task 0.0 in stage 1.0 (TID 1)
org.apache.spark.SparkException: Task failed while writing rows.
```

**AFTER**
```scala
scala> sql("CREATE TABLE orc1 USING ORC AS SELECT 1 `a b`")
17/09/04 13:27:40 ERROR CreateDataSourceTableAsSelectCommand: Failed to write to table orc1
org.apache.spark.sql.AnalysisException: Attribute name "a b" contains invalid character(s) among " ,;{}()\n\t=". Please use alias to rename it.;
```

## How was this patch tested?

Pass the Jenkins with a new test case.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #19124 from dongjoon-hyun/SPARK-21912.
2017-09-06 22:20:48 -07:00
Liang-Chi Hsieh ce7293c150 [SPARK-21835][SQL][FOLLOW-UP] RewritePredicateSubquery should not produce unresolved query plans
## What changes were proposed in this pull request?

This is a follow-up of #19050 to deal with `ExistenceJoin` case.

## How was this patch tested?

Added test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #19151 from viirya/SPARK-21835-followup.
2017-09-06 22:15:25 -07:00
Tucker Beck aad2125475 Fixed pandoc dependency issue in python/setup.py
## Problem Description

When pyspark is listed as a dependency of another package, installing
the other package will cause an install failure in pyspark. When the
other package is being installed, pyspark's setup_requires requirements
are installed including pypandoc. Thus, the exception handling on
setup.py:152 does not work because the pypandoc module is indeed
available. However, the pypandoc.convert() function fails if pandoc
itself is not installed (in our use cases it is not). This raises an
OSError that is not handled, and setup fails.

The following is a sample failure:
```
$ which pandoc
$ pip freeze | grep pypandoc
pypandoc==1.4
$ pip install pyspark
Collecting pyspark
  Downloading pyspark-2.2.0.post0.tar.gz (188.3MB)
    100% |████████████████████████████████| 188.3MB 16.8MB/s
    Complete output from command python setup.py egg_info:
    Maybe try:

        sudo apt-get install pandoc
    See http://johnmacfarlane.net/pandoc/installing.html
    for installation options
    ---------------------------------------------------------------

    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip-build-mfnizcwa/pyspark/setup.py", line 151, in <module>
        long_description = pypandoc.convert('README.md', 'rst')
      File "/home/tbeck/.virtualenvs/cem/lib/python3.5/site-packages/pypandoc/__init__.py", line 69, in convert
        outputfile=outputfile, filters=filters)
      File "/home/tbeck/.virtualenvs/cem/lib/python3.5/site-packages/pypandoc/__init__.py", line 260, in _convert_input
        _ensure_pandoc_path()
      File "/home/tbeck/.virtualenvs/cem/lib/python3.5/site-packages/pypandoc/__init__.py", line 544, in _ensure_pandoc_path
        raise OSError("No pandoc was found: either install pandoc and add it\n"
    OSError: No pandoc was found: either install pandoc and add it
    to your PATH or or call pypandoc.download_pandoc(...) or
    install pypandoc wheels with included pandoc.

    ----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-mfnizcwa/pyspark/
```

## What changes were proposed in this pull request?

This change simply adds an additional exception handler for the OSError
that is raised. This allows pyspark to be installed client-side without requiring pandoc to be installed.

## How was this patch tested?

I tested this by building a wheel package of pyspark with the change applied. Then, in a clean virtual environment with pypandoc installed but pandoc not available on the system, I installed pyspark from the wheel.

Here is the output

```
$ pip freeze | grep pypandoc
pypandoc==1.4
$ which pandoc
$ pip install --no-cache-dir ../spark/python/dist/pyspark-2.3.0.dev0-py2.py3-none-any.whl
Processing /home/tbeck/work/spark/python/dist/pyspark-2.3.0.dev0-py2.py3-none-any.whl
Requirement already satisfied: py4j==0.10.6 in /home/tbeck/.virtualenvs/cem/lib/python3.5/site-packages (from pyspark==2.3.0.dev0)
Installing collected packages: pyspark
Successfully installed pyspark-2.3.0.dev0
```

Author: Tucker Beck <tucker.beck@rentrakmail.com>

Closes #18981 from dusktreader/dusktreader/fix-pandoc-dependency-issue-in-setup_py.
2017-09-07 09:38:00 +09:00
Jacek Laskowski fa0092bddf [SPARK-21901][SS] Define toString for StateOperatorProgress
## What changes were proposed in this pull request?

Just `StateOperatorProgress.toString` + few formatting fixes

## How was this patch tested?

Local build. Waiting for OK from Jenkins.

Author: Jacek Laskowski <jacek@japila.pl>

Closes #19112 from jaceklaskowski/SPARK-21901-StateOperatorProgress-toString.
2017-09-06 15:48:48 -07:00
Jose Torres acdf45fb52 [SPARK-21765] Check that optimization doesn't affect isStreaming bit.
## What changes were proposed in this pull request?

Add an assert in logical plan optimization that the isStreaming bit stays the same, and fix empty relation rules where that wasn't happening.

## How was this patch tested?

new and existing unit tests

Author: Jose Torres <joseph.torres@databricks.com>
Author: Jose Torres <joseph-torres@databricks.com>

Closes #19056 from joseph-torres/SPARK-21765-followup.
2017-09-06 11:19:46 -07:00
Felix Cheung 36b48ee6e9 [SPARK-21801][SPARKR][TEST] set random seed for predictable test
## What changes were proposed in this pull request?

set.seed() before running tests

## How was this patch tested?

jenkins, appveyor

Author: Felix Cheung <felixcheung_m@hotmail.com>

Closes #19111 from felixcheung/rranseed.
2017-09-06 09:53:55 -07:00
Liang-Chi Hsieh f2e22aebfe [SPARK-21835][SQL] RewritePredicateSubquery should not produce unresolved query plans
## What changes were proposed in this pull request?

Correlated predicate subqueries are rewritten into `Join` by the rule `RewritePredicateSubquery`  during optimization.

It is possibly that the two sides of the `Join` have conflicting attributes. The query plans produced by `RewritePredicateSubquery` become unresolved and break structural integrity.

We should check if there are conflicting attributes in the `Join` and de-duplicate them by adding a `Project`.

## How was this patch tested?

Added tests.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #19050 from viirya/SPARK-21835.
2017-09-06 07:42:19 -07:00
hyukjinkwon 64936c14a7 [SPARK-21903][BUILD][FOLLOWUP] Upgrade scalastyle-maven-plugin and scalastyle as well in POM and SparkBuild.scala
## What changes were proposed in this pull request?

This PR proposes to match scalastyle version in POM and SparkBuild.scala

## How was this patch tested?

Manual builds.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #19146 from HyukjinKwon/SPARK-21903-follow-up.
2017-09-06 23:28:12 +09:00
Bryan Cutler 16c4c03c71 [SPARK-19357][ML] Adding parallel model evaluation in ML tuning
## What changes were proposed in this pull request?
Modified `CrossValidator` and `TrainValidationSplit` to be able to evaluate models in parallel for a given parameter grid.  The level of parallelism is controlled by a parameter `numParallelEval` used to schedule a number of models to be trained/evaluated so that the jobs can be run concurrently.  This is a naive approach that does not check the cluster for needed resources, so care must be taken by the user to tune the parameter appropriately.  The default value is `1` which will train/evaluate in serial.

## How was this patch tested?
Added unit tests for CrossValidator and TrainValidationSplit to verify that model selection is the same when run in serial vs parallel.  Manual testing to verify tasks run in parallel when param is > 1. Added parameter usage to relevant examples.

Author: Bryan Cutler <cutlerb@gmail.com>

Closes #16774 from BryanCutler/parallel-model-eval-SPARK-19357.
2017-09-06 14:12:27 +02:00
Riccardo Corbella 4ee7dfe41b [SPARK-21924][DOCS] Update structured streaming programming guide doc
## What changes were proposed in this pull request?

Update the line "For example, the data (12:09, cat) is out of order and late, and it falls in windows 12:05 - 12:15 and 12:10 - 12:20." as follow "For example, the data (12:09, cat) is out of order and late, and it falls in windows 12:00 - 12:10 and 12:05 - 12:15." under the programming structured streaming programming guide.

Author: Riccardo Corbella <r.corbella@reply.it>

Closes #19137 from riccardocorbella/bugfix.
2017-09-06 08:22:57 +01:00
jerryshao 445f1790ad [SPARK-9104][CORE] Expose Netty memory metrics in Spark
## What changes were proposed in this pull request?

This PR exposes Netty memory usage for Spark's `TransportClientFactory` and `TransportServer`, including the details of each direct arena and heap arena metrics, as well as aggregated metrics. The purpose of adding the Netty metrics is to better know the memory usage of Netty in Spark shuffle, rpc and others network communications, and guide us to better configure the memory size of executors.

This PR doesn't expose these metrics to any sink, to leverage this feature, still requires to connect to either MetricsSystem or collect them back to Driver to display.

## How was this patch tested?

Add Unit test to verify it, also manually verified in real cluster.

Author: jerryshao <sshao@hortonworks.com>

Closes #18935 from jerryshao/SPARK-9104.
2017-09-05 21:28:54 -07:00
jerryshao 6a23254480 [SPARK-18061][THRIFTSERVER] Add spnego auth support for ThriftServer thrift/http protocol
Spark ThriftServer doesn't support spnego auth for thrift/http protocol, this mainly used for knox+thriftserver scenario. Since in HiveServer2 CLIService there already has existing codes to support it. So here copy it to Spark ThriftServer to make it support.

Related Hive JIRA HIVE-6697.

Manual verification.

Author: jerryshao <sshao@hortonworks.com>

Closes #18628 from jerryshao/SPARK-21407.

Change-Id: I61ef0c09f6972bba982475084a6b0ae3a74e385e
2017-09-06 09:39:39 +08:00
Dongjoon Hyun 9e451bcf36 [MINOR][DOC] Update Partition Discovery section to enumerate all available file sources
## What changes were proposed in this pull request?

All built-in data sources support `Partition Discovery`. We had better update the document to give the users more benefit clearly.

**AFTER**

<img width="906" alt="1" src="https://user-images.githubusercontent.com/9700541/30083628-14278908-9244-11e7-98dc-9ad45fe233a9.png">

## How was this patch tested?

```
SKIP_API=1 jekyll serve --watch
```

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #19139 from dongjoon-hyun/partitiondiscovery.
2017-09-05 14:35:09 -07:00
Xingbo Jiang fd60d4fa6c [SPARK-21652][SQL] Fix rule confliction between InferFiltersFromConstraints and ConstantPropagation
## What changes were proposed in this pull request?

For the given example below, the predicate added by `InferFiltersFromConstraints` is folded by `ConstantPropagation` later, this leads to unconverged optimize iteration:
```
Seq((1, 1)).toDF("col1", "col2").createOrReplaceTempView("t1")
Seq(1, 2).toDF("col").createOrReplaceTempView("t2")
sql("SELECT * FROM t1, t2 WHERE t1.col1 = 1 AND 1 = t1.col2 AND t1.col1 = t2.col AND t1.col2 = t2.col")
```

We can fix this by adjusting the indent of the optimize rules.

## How was this patch tested?

Add test case that would have failed in `SQLQuerySuite`.

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #19099 from jiangxb1987/unconverge-optimization.
2017-09-05 13:12:39 -07:00
Burak Yavuz 8c954d2cd1 [SPARK-21925] Update trigger interval documentation in docs with behavior change in Spark 2.2
Forgot to update docs with behavior change.

Author: Burak Yavuz <brkyvz@gmail.com>

Closes #19138 from brkyvz/trigger-doc-fix.
2017-09-05 13:10:32 -07:00
gatorsmile 2974406d17 [SPARK-21845][SQL][TEST-MAVEN] Make codegen fallback of expressions configurable
## What changes were proposed in this pull request?
We should make codegen fallback of expressions configurable. So far, it is always on. We might hide it when our codegen have compilation bugs. Thus, we should also disable the codegen fallback when running test cases.

## How was this patch tested?
Added test cases

Author: gatorsmile <gatorsmile@gmail.com>

Closes #19119 from gatorsmile/fallbackCodegen.
2017-09-05 09:04:03 -07:00
hyukjinkwon 02a4386aec [SPARK-20978][SQL] Bump up Univocity version to 2.5.4
## What changes were proposed in this pull request?

There was a bug in Univocity Parser that causes the issue in SPARK-20978. This was fixed as below:

```scala
val df = spark.read.schema("a string, b string, unparsed string").option("columnNameOfCorruptRecord", "unparsed").csv(Seq("a").toDS())
df.show()
```

**Before**

```
java.lang.NullPointerException
	at scala.collection.immutable.StringLike$class.stripLineEnd(StringLike.scala:89)
	at scala.collection.immutable.StringOps.stripLineEnd(StringOps.scala:29)
	at org.apache.spark.sql.execution.datasources.csv.UnivocityParser.org$apache$spark$sql$execution$datasources$csv$UnivocityParser$$getCurrentInput(UnivocityParser.scala:56)
	at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anonfun$org$apache$spark$sql$execution$datasources$csv$UnivocityParser$$convert$1.apply(UnivocityParser.scala:207)
	at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anonfun$org$apache$spark$sql$execution$datasources$csv$UnivocityParser$$convert$1.apply(UnivocityParser.scala:207)
...
```

**After**

```
+---+----+--------+
|  a|   b|unparsed|
+---+----+--------+
|  a|null|       a|
+---+----+--------+
```

It was fixed in 2.5.0 and 2.5.4 was released. I guess it'd be safe to upgrade this.

## How was this patch tested?

Unit test added in `CSVSuite.scala`.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #19113 from HyukjinKwon/bump-up-univocity.
2017-09-05 23:21:43 +08:00
hyukjinkwon 7f3c6ff4ff [SPARK-21903][BUILD] Upgrade scalastyle to 1.0.0.
## What changes were proposed in this pull request?

1.0.0 fixes an issue with import order, explicit type for public methods, line length limitation and comment validation:

```
[error] .../spark/repl/scala-2.11/src/main/scala/org/apache/spark/repl/Main.scala:50:16: Are you sure you want to println? If yes, wrap the code block with
[error]       // scalastyle:off println
[error]       println(...)
[error]       // scalastyle:on println
[error] .../spark/repl/scala-2.11/src/main/scala/org/apache/spark/repl/SparkILoop.scala:49: File line length exceeds 100 characters
[error] .../spark/repl/scala-2.11/src/main/scala/org/apache/spark/repl/SparkILoop.scala:22:21: Are you sure you want to println? If yes, wrap the code block with
[error]       // scalastyle:off println
[error]       println(...)
[error]       // scalastyle:on println
[error] .../spark/streaming/src/test/java/org/apache/spark/streaming/JavaTestUtils.scala:35:6: Public method must have explicit type
[error] .../spark/streaming/src/test/java/org/apache/spark/streaming/JavaTestUtils.scala:51:6: Public method must have explicit type
[error] .../spark/streaming/src/test/java/org/apache/spark/streaming/JavaTestUtils.scala:93:15: Public method must have explicit type
[error] .../spark/streaming/src/test/java/org/apache/spark/streaming/JavaTestUtils.scala:98:15: Public method must have explicit type
[error] .../spark/streaming/src/test/java/org/apache/spark/streaming/JavaTestUtils.scala:47:2: Insert a space after the start of the comment
[error] .../spark/streaming/src/test/java/org/apache/spark/streaming/JavaTestUtils.scala:26:43: JavaDStream should come before JavaDStreamLike.
```

This PR also fixes the workaround added in SPARK-16877 for `org.scalastyle.scalariform.OverrideJavaChecker` feature, added from 0.9.0.

## How was this patch tested?

Manually tested.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #19116 from HyukjinKwon/scalastyle-1.0.0.
2017-09-05 19:40:05 +09:00
Dongjoon Hyun 4e7a29efdb [SPARK-21913][SQL][TEST] withDatabase` should drop database with CASCADE
## What changes were proposed in this pull request?

Currently, `withDatabase` fails if the database is not empty. It would be great if we drop cleanly with CASCADE.

## How was this patch tested?

This is a change on test util. Pass the existing Jenkins.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #19125 from dongjoon-hyun/SPARK-21913.
2017-09-05 00:20:16 -07:00
Sean Owen ca59445adb [SPARK-21418][SQL] NoSuchElementException: None.get in DataSourceScanExec with sun.io.serialization.extendedDebugInfo=true
## What changes were proposed in this pull request?

If no SparkConf is available to Utils.redact, simply don't redact.

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #19123 from srowen/SPARK-21418.
2017-09-04 23:02:59 +02:00
Liang-Chi Hsieh 9f30d92803 [SPARK-21654][SQL] Complement SQL predicates expression description
## What changes were proposed in this pull request?

SQL predicates don't have complete expression description. This patch goes to complement the description by adding arguments, examples.

This change also adds related test cases for the SQL predicate expressions.

## How was this patch tested?

Existing tests. And added predicate test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #18869 from viirya/SPARK-21654.
2017-09-03 21:55:18 -07:00
hyukjinkwon 07fd68a29f [SPARK-21897][PYTHON][R] Add unionByName API to DataFrame in Python and R
## What changes were proposed in this pull request?

This PR proposes to add a wrapper for `unionByName` API to R and Python as well.

**Python**

```python
df1 = spark.createDataFrame([[1, 2, 3]], ["col0", "col1", "col2"])
df2 = spark.createDataFrame([[4, 5, 6]], ["col1", "col2", "col0"])
df1.unionByName(df2).show()
```

```
+----+----+----+
|col0|col1|col3|
+----+----+----+
|   1|   2|   3|
|   6|   4|   5|
+----+----+----+
```

**R**

```R
df1 <- select(createDataFrame(mtcars), "carb", "am", "gear")
df2 <- select(createDataFrame(mtcars), "am", "gear", "carb")
head(unionByName(limit(df1, 2), limit(df2, 2)))
```

```
  carb am gear
1    4  1    4
2    4  1    4
3    4  1    4
4    4  1    4
```

## How was this patch tested?

Doctests for Python and unit test added in `test_sparkSQL.R` for R.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #19105 from HyukjinKwon/unionByName-r-python.
2017-09-03 21:03:21 +09:00
gatorsmile acb7fed237 [SPARK-21891][SQL] Add TBLPROPERTIES to DDL statement: CREATE TABLE USING
## What changes were proposed in this pull request?
Add `TBLPROPERTIES` to the DDL statement `CREATE TABLE USING`.

After this change, the DDL becomes
```
CREATE [TEMPORARY] TABLE [IF NOT EXISTS] [db_name.]table_name
USING table_provider
[OPTIONS table_property_list]
[PARTITIONED BY (col_name, col_name, ...)]
[CLUSTERED BY (col_name, col_name, ...)
 [SORTED BY (col_name [ASC|DESC], ...)]
 INTO num_buckets BUCKETS
]
[LOCATION path]
[COMMENT table_comment]
[TBLPROPERTIES (property_name=property_value, ...)]
[[AS] select_statement];
```

## How was this patch tested?
Add a few tests

Author: gatorsmile <gatorsmile@gmail.com>

Closes #19100 from gatorsmile/addTablePropsToCreateTableUsing.
2017-09-02 14:53:41 -07:00
WeichenXu 900f14f6fa [SPARK-21729][ML][TEST] Generic test for ProbabilisticClassifier to ensure consistent output columns
## What changes were proposed in this pull request?

Add test for prediction using the model with all combinations of output columns turned on/off.
Make sure the output column values match, presumably by comparing vs. the case with all 3 output columns turned on.

## How was this patch tested?

Test updated.

Author: WeichenXu <weichen.xu@databricks.com>
Author: WeichenXu <WeichenXu123@outlook.com>

Closes #19065 from WeichenXu123/generic_test_for_prob_classifier.
2017-09-01 17:32:33 -07:00
gatorsmile aba9492d25 [SPARK-21895][SQL] Support changing database in HiveClient
## What changes were proposed in this pull request?
Supporting moving tables across different database in HiveClient `alterTable`

## How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #19104 from gatorsmile/alterTable.
2017-09-01 13:21:06 -07:00
Sean Owen 12ab7f7e89 [SPARK-14280][BUILD][WIP] Update change-version.sh and pom.xml to add Scala 2.12 profiles and enable 2.12 compilation
…build; fix some things that will be warnings or errors in 2.12; restore Scala 2.12 profile infrastructure

## What changes were proposed in this pull request?

This change adds back the infrastructure for a Scala 2.12 build, but does not enable it in the release or Python test scripts.

In order to make that meaningful, it also resolves compile errors that the code hits in 2.12 only, in a way that still works with 2.11.

It also updates dependencies to the earliest minor release of dependencies whose current version does not yet support Scala 2.12. This is in a sense covered by other JIRAs under the main umbrella, but implemented here. The versions below still work with 2.11, and are the _latest_ maintenance release in the _earliest_ viable minor release.

- Scalatest 2.x -> 3.0.3
- Chill 0.8.0 -> 0.8.4
- Clapper 1.0.x -> 1.1.2
- json4s 3.2.x -> 3.4.2
- Jackson 2.6.x -> 2.7.9 (required by json4s)

This change does _not_ fully enable a Scala 2.12 build:

- It will also require dropping support for Kafka before 0.10. Easy enough, just didn't do it yet here
- It will require recreating `SparkILoop` and `Main` for REPL 2.12, which is SPARK-14650. Possible to do here too.

What it does do is make changes that resolve much of the remaining gap without affecting the current 2.11 build.

## How was this patch tested?

Existing tests and build. Manually tested with `./dev/change-scala-version.sh 2.12` to verify it compiles, modulo the exceptions above.

Author: Sean Owen <sowen@cloudera.com>

Closes #18645 from srowen/SPARK-14280.
2017-09-01 19:21:21 +01:00
he.qiao 12f0d24225 [SPARK-21880][WEB UI] In the SQL table page, modify jobs trace information
## What changes were proposed in this pull request?
As shown below, for example, When the job 5 is running, It was a mistake to think that five jobs were running, So I think it would be more appropriate to change jobs to job id.
![image](https://user-images.githubusercontent.com/21355020/29909612-4dc85064-8e59-11e7-87cd-275a869243bb.png)

## How was this patch tested?
no need

Author: he.qiao <he.qiao17@zte.com.cn>

Closes #19093 from Geek-He/08_31_sqltable.
2017-09-01 10:47:11 -07:00
Marcelo Vanzin 0bdbefe9dd [SPARK-21728][CORE] Follow up: fix user config, auth in SparkSubmit logging.
- SecurityManager complains when auth is enabled but no secret is defined;
  SparkSubmit doesn't use the auth functionality of the SecurityManager,
  so use a dummy secret to work around the exception.

- Only reset the log4j configuration when Spark was the one initializing
  it, otherwise user-defined log configuration may be lost.

Tested with the log config file posted to the bug, on a secured YARN cluster.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #19089 from vanzin/SPARK-21728.
2017-09-01 10:29:36 -07:00
hyukjinkwon 648a8626b8 [SPARK-21789][PYTHON] Remove obsolete codes for parsing abstract schema strings
## What changes were proposed in this pull request?

This PR proposes to remove private functions that look not used in the main codes, `_split_schema_abstract`, `_parse_field_abstract`, `_parse_schema_abstract` and `_infer_schema_type`.

## How was this patch tested?

Existing tests.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #18647 from HyukjinKwon/remove-abstract.
2017-09-01 13:09:24 +09:00
hyukjinkwon 5cd8ea99f0 [SPARK-21779][PYTHON] Simpler DataFrame.sample API in Python
## What changes were proposed in this pull request?

This PR make `DataFrame.sample(...)` can omit `withReplacement` defaulting `False`, consistently with equivalent Scala / Java API.

In short, the following examples are allowed:

```python
>>> df = spark.range(10)
>>> df.sample(0.5).count()
7
>>> df.sample(fraction=0.5).count()
3
>>> df.sample(0.5, seed=42).count()
5
>>> df.sample(fraction=0.5, seed=42).count()
5
```

In addition, this PR also adds some type checking logics as below:

```python
>>> df = spark.range(10)
>>> df.sample().count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [].
>>> df.sample(True).count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'bool'>].
>>> df.sample(42).count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'int'>].
>>> df.sample(fraction=False, seed="a").count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'bool'>, <type 'str'>].
>>> df.sample(seed=[1]).count()
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'list'>].
>>> df.sample(withReplacement="a", fraction=0.5, seed=1)
...
TypeError: withReplacement (optional), fraction (required) and seed (optional) should be a bool, float and number; however, got [<type 'str'>, <type 'float'>, <type 'int'>].
```

## How was this patch tested?

Manually tested, unit tests added in doc tests and manually checked the built documentation for Python.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #18999 from HyukjinKwon/SPARK-21779.
2017-09-01 13:01:23 +09:00
WeichenXu f5e10a34e6 [SPARK-21862][ML] Add overflow check in PCA
## What changes were proposed in this pull request?

add overflow check in PCA, otherwise it is possible to throw `NegativeArraySizeException` when `k` and `numFeatures` are too large.
The overflow checking formula is here:
https://github.com/scalanlp/breeze/blob/master/math/src/main/scala/breeze/linalg/functions/svd.scala#L87

## How was this patch tested?

N/A

Author: WeichenXu <weichen.xu@databricks.com>

Closes #19078 from WeichenXu123/SVD_overflow_check.
2017-08-31 16:25:10 -07:00
WeichenXu 96028e36b4 [SPARK-17139][ML][FOLLOW-UP] Add convenient method asBinary for casting to BinaryLogisticRegressionSummary
## What changes were proposed in this pull request?

add an "asBinary" method to LogisticRegressionSummary for convenient casting to BinaryLogisticRegressionSummary.

## How was this patch tested?

Testcase updated.

Author: WeichenXu <weichen.xu@databricks.com>

Closes #19072 from WeichenXu123/mlor_summary_as_binary.
2017-08-31 16:22:40 -07:00
Andrew Ray cba69aeb45 [SPARK-21110][SQL] Structs, arrays, and other orderable datatypes should be usable in inequalities
## What changes were proposed in this pull request?

Allows `BinaryComparison` operators to work on any data type that actually supports ordering as verified by `TypeUtils.checkForOrderingExpr` instead of relying on the incomplete list `TypeCollection.Ordered` (which is removed by this PR).

## How was this patch tested?

Updated unit tests to cover structs and arrays.

Author: Andrew Ray <ray.andrew@gmail.com>

Closes #18818 from aray/SPARK-21110.
2017-08-31 15:08:03 -07:00