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7817 commits

Author SHA1 Message Date
yi.wu 15616f499a
[SPARK-33173][CORE][TESTS][FOLLOWUP] Use local[2] and AtomicInteger
### What changes were proposed in this pull request?

Use `local[2]` to let tasks launch at the same time. And change counters (`numOnTaskXXX`) to `AtomicInteger` type to ensure thread safe.

### Why are the changes needed?

The test is still flaky after the fix https://github.com/apache/spark/pull/30072. See: https://github.com/apache/spark/pull/30728/checks?check_run_id=1557987642

And it's easy to reproduce if you test it multiple times (e.g. 100) locally.

The test sets up a stage with 2 tasks to run on an executor with 1 core. So these 2 tasks have to be launched one by one.
The task-2 will be launched after task-1 fails. However, since we don't retry failed task in local mode  (MAX_LOCAL_TASK_FAILURES = 1), the stage will abort right away after task-1 fail and cancels the running task-2 at the same time. There's a chance that task-2 gets canceled before calling `PluginContainer.onTaskStart`, which leads to the test failure.

### Does this PR introduce _any_ user-facing change?

No

### How was this patch tested?

Tested manually after the fix and the test is no longer flaky.

Closes #30823 from Ngone51/debug-flaky-spark-33088.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-12-17 09:28:17 -08:00
suqilong 8c81cf7d71 [SPARK-22769] Do not log rpc post message error when sparkEnv is already stopped
### What changes were proposed in this pull request?

When driver stopping, pending rpc requests will cause error like:

> 17/12/12 18:30:16 ERROR TransportRequestHandler: Error while invoking RpcHandler#receive() for one-way message.
org.apache.spark.SparkException: Could not find CoarseGrainedScheduler.
at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:154)
at org.apache.spark.rpc.netty.Dispatcher.postOneWayMessage(Dispatcher.scala:134)
at org.apache.spark.rpc.netty.NettyRpcHandler.receive(NettyRpcEnv.scala:570)
at org.apache.spark.network.server.TransportRequestHandler.processOneWayMessage(TransportRequestHandler.java:180)
at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:109)
at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:119)
at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:51)

Or like:

> 17/12/12 18:20:44 INFO MemoryStore: MemoryStore cleared
17/12/12 18:20:44 INFO BlockManager: BlockManager stopped
17/12/12 18:20:44 INFO BlockManagerMaster: BlockManagerMaster stopped
17/12/12 18:20:44 ERROR TransportRequestHandler: Error while invoking RpcHandler#receive() for one-way message.
org.apache.spark.rpc.RpcEnvStoppedException: RpcEnv already stopped.
at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:152)
at org.apache.spark.rpc.netty.Dispatcher.postOneWayMessage(Dispatcher.scala:134)
at org.apache.spark.rpc.netty.NettyRpcHandler.receive(NettyRpcEnv.scala:570)

These are because CoarseGrainedScheduler and rpcEnv are already stopped, they're not error.

The related issue SPARK-22769 was opened on 2017, but the author didn't finish the pull request, so reopen this issue.

### How was this patch tested?
Existing tests

Closes #30658 from sqlwindspeaker/donot-log-rpc-error.

Authored-by: suqilong <suqilong@qiyi.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-12-17 08:56:45 -06:00
yi.wu 34e4d87023 [SPARK-33774][UI][CORE] Back to Master" returns 500 error in Standalone cluster
### What changes were proposed in this pull request?

Initiate the `masterWebUiUrl` with the `webUi. webUrl` instead of the `masterPublicAddress`.

### Why are the changes needed?

Since [SPARK-21642](https://issues.apache.org/jira/browse/SPARK-21642), `WebUI` has changed from `localHostName` to `localCanonicalHostName` as the hostname to set up the web UI. However, the `masterPublicAddress` is from `RpcEnv`'s host address, which still uses `localHostName`. As a result, it returns the wrong Master web URL to the Worker.

### Does this PR introduce _any_ user-facing change?

Yes, when users click "Back to Master" in the Worker page:

Before this PR:

<img width="3258" alt="WeChat4acbfd163f51c76a5f9bc388c7479785" src="https://user-images.githubusercontent.com/16397174/102057951-b9664280-3e29-11eb-8749-5ee293902bdf.png">

After this PR:

![image](https://user-images.githubusercontent.com/16397174/102058016-d438b700-3e29-11eb-8641-a23a6b2f542e.png)

(Return to the Master page successfully.)

### How was this patch tested?

Tested manually.

Closes #30759 from Ngone51/fix-back-to-master.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-12-17 08:52:09 -06:00
Dongjoon Hyun ed09673fb9 [SPARK-33819][CORE] SingleFileEventLogFileReader/RollingEventLogFilesFileReader should be package private
### What changes were proposed in this pull request?

This PR aims to convert `EventLogFileReader`'s derived classes into `package private`.
- SingleFileEventLogFileReader
- RollingEventLogFilesFileReader

`EventLogFileReader` itself is used in `scheduler` module during tests.

### Why are the changes needed?

This classes were designed to be internal. This PR hides it explicitly to reduce the maintenance burden.

### Does this PR introduce _any_ user-facing change?

Yes, but these were exposed accidentally.

### How was this patch tested?

Pass CIs.

Closes #30814 from dongjoon-hyun/SPARK-33790.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-17 15:51:04 +09:00
sychen 0c12900120 [SPARK-33790][CORE] Reduce the rpc call of getFileStatus in SingleFileEventLogFileReader
### What changes were proposed in this pull request?
`FsHistoryProvider#checkForLogs` already has `FileStatus` when constructing `SingleFileEventLogFileReader`, and there is no need to get the `FileStatus` again when `SingleFileEventLogFileReader#fileSizeForLastIndex`.

### Why are the changes needed?
This can reduce a lot of rpc calls and improve the speed of the history server.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
exist ut

Closes #30780 from cxzl25/SPARK-33790.

Authored-by: sychen <sychen@ctrip.com>
Signed-off-by: Jungtaek Lim <kabhwan.opensource@gmail.com>
2020-12-17 11:36:31 +09:00
Sander Goos ddff94fd32 [SPARK-33793][TESTS] Introduce withExecutor to ensure proper cleanup in tests
### What changes were proposed in this pull request?
This PR introduces a helper method `withExecutor` that handles the creation of an Executor object and ensures that it is always stopped in a finally block. The tests in ExecutorSuite have been refactored to use this method.

### Why are the changes needed?
Recently an issue was discovered that leaked Executors (which are not explicitly stopped after a test) can cause other tests to fail due to the JVM being killed after 10 min. It is therefore crucial that tests always stop the Executor. By introducing this helper method, a simple pattern is established that can be easily adopted in new tests, which reduces the risk of regressions.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Run the ExecutorSuite locally.

Closes #30783 from sander-goos/SPARK-33793-close-executors.

Authored-by: Sander Goos <sander.goos@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-16 11:26:54 +09:00
HyukjinKwon a99a47ca1d [SPARK-33748][K8S] Respect environment variables and configurations for Python executables
### What changes were proposed in this pull request?

This PR proposes:

- Respect `PYSPARK_PYTHON` and `PYSPARK_DRIVER_PYTHON` environment variables, or `spark.pyspark.python` and `spark.pyspark.driver.python` configurations in Kubernates just like other cluster types in Spark.

- Depreate `spark.kubernetes.pyspark.pythonVersion` and guide users to set the environment variables and configurations for Python executables.
    NOTE that `spark.kubernetes.pyspark.pythonVersion` is already a no-op configuration without this PR. Default is `3` and other values are disallowed.

- In order for Python executable settings to be consistently used, fix `spark.archives` option to unpack into the current working directory in the driver of Kubernates' cluster mode. This behaviour is identical with Yarn's cluster mode. By doing this, users can leverage Conda or virtuenenv in cluster mode as below:

   ```python
    conda create -y -n pyspark_conda_env -c conda-forge pyarrow pandas conda-pack
    conda activate pyspark_conda_env
    conda pack -f -o pyspark_conda_env.tar.gz
    PYSPARK_PYTHON=./environment/bin/python spark-submit --archives pyspark_conda_env.tar.gz#environment app.py
   ```

- Removed several unused or useless codes such as `extractS3Key` and `renameResourcesToLocalFS`

### Why are the changes needed?

- To provide a consistent support of PySpark by using `PYSPARK_PYTHON` and `PYSPARK_DRIVER_PYTHON` environment variables, or `spark.pyspark.python` and `spark.pyspark.driver.python` configurations.
- To provide Conda and virtualenv support via `spark.archives` options.

### Does this PR introduce _any_ user-facing change?

Yes:

- `spark.kubernetes.pyspark.pythonVersion` is deprecated.
- `PYSPARK_PYTHON` and `PYSPARK_DRIVER_PYTHON` environment variables, and `spark.pyspark.python` and `spark.pyspark.driver.python` configurations are respected.

### How was this patch tested?

Manually tested via:

```bash
minikube delete
minikube start --cpus 12 --memory 16384
kubectl create namespace spark-integration-test
cat <<EOF | kubectl apply -f -
apiVersion: v1
kind: ServiceAccount
metadata:
  name: spark
  namespace: spark-integration-test
EOF
kubectl create clusterrolebinding spark-role --clusterrole=edit --serviceaccount=spark-integration-test:spark --namespace=spark-integration-test
dev/make-distribution.sh --pip --tgz -Pkubernetes
resource-managers/kubernetes/integration-tests/dev/dev-run-integration-tests.sh --spark-tgz `pwd`/spark-3.2.0-SNAPSHOT-bin-3.2.0.tgz  --service-account spark --namespace spark-integration-test
```

Unittests were also added.

Closes #30735 from HyukjinKwon/SPARK-33748.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-15 08:56:45 +09:00
Kent Yao 4d47ac4b4b [SPARK-33705][SQL][TEST] Fix HiveThriftHttpServerSuite flakiness
### What changes were proposed in this pull request?
TO FIX flaky tests:

https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/132345/testReport/
```
org.apache.spark.sql.hive.thriftserver.HiveThriftHttpServerSuite.JDBC query execution
org.apache.spark.sql.hive.thriftserver.HiveThriftHttpServerSuite.Checks Hive version
org.apache.spark.sql.hive.thriftserver.HiveThriftHttpServerSuite.SPARK-24829 Checks cast as float
```

The root cause here is a jar conflict issue.
`NewCookie.isHttpOnly` is not defined in the `jsr311-api.jar` which conflicts
The transitive artifact `jsr311-api.jar` of `hadoop-client` is excluded at the maven side. See https://issues.apache.org/jira/browse/SPARK-27179.

The Jenkins PR builder and Github Action use `SBT` as the compiler tool.

First, the exclusion rule from maven is not followed by sbt, so I was able to see `jsr311-api.jar` from maven cache to be added to the classpath directly. **This seems to be a  bug of `sbt-pom-reader` plugin but I'm not that sure.**

Then I added an `ExcludeRule` for the `hive-thriftserver` module at the SBT side and did see the `jsr311-api.jar` gone, but the CI jobs still failed with the same error.

I added a trace log in ThriftHttpServlet

```s
ERROR ThriftHttpServlet: !!!!!!!!! Suspect???????? --->
file:/home/jenkins/workspace/SparkPullRequestBuilder/assembly/target/scala-2.12/jars/jsr311-api-1.1.1.jar
```
And the log pointed out that the assembly phase copied it to `assembly/target/scala-2.12/jars/` which will be added to the classpath too. With the help of SBT `dependencyTree` tool, I saw the `jsr311-api` again as a transitive of `jersery-core` from `yarn` module with a `test` scope. So **This seems to be another bug from the SBT side of the `sbt-assembly` plugin.**  It copied a test scope transitive artifact to the assembly output.

In this PR, I defined some rules in SparkBuild.scala to bypass the potential bugs from the SBT side.

First, exclude the `jsr311` from all over the project and then add it back separately to the YARN module for SBT.

Additionally, the HiveThriftServerSuites was reflected for reducing flakiness too, but not related to the bugs I have found so far.

### Why are the changes needed?

fix test here

### Does this PR introduce _any_ user-facing change?

NO
### How was this patch tested?

passing jenkins and ga

Closes #30643 from yaooqinn/HiveThriftHttpServerSuite.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-12-14 05:14:38 +00:00
linzebing 0277fddaef [MINOR][UI] Correct JobPage's skipped/pending tableHeaderId
### What changes were proposed in this pull request?

Current Spark Web UI job page's header link of pending/skipped stages is inconsistent with their statuses. See the picture below:
![image](https://user-images.githubusercontent.com/9404831/101998894-1e843180-3c8c-11eb-8d94-10df9edb68e7.png)

### Why are the changes needed?

The code determining the `pendingOrSkippedTableId` has the wrong logic. As explained in the code:
> If the job is completed, then any pending stages are displayed as "skipped" [code pointer](https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/ui/jobs/JobPage.scala#L266)

This PR fixes the logic for `pendingOrSkippedTableId` which aligns with the stage statuses.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Verified that header link is consistent with stage status with the fix.

Closes #30749 from linzebing/ui_bug.

Authored-by: linzebing <linzebing1995@gmail.com>
Signed-off-by: Kousuke Saruta <sarutak@oss.nttdata.com>
2020-12-13 22:00:05 +09:00
HyukjinKwon e2cdfcebd9 [SPARK-32447][CORE][PYTHON][FOLLOW-UP] Fix other occurrences of 'python' to 'python3'
### What changes were proposed in this pull request?

This PR proposes to change python to python3 in several places missed.

### Why are the changes needed?

To use Python 3 by default safely.

### Does this PR introduce _any_ user-facing change?

Yes, it will uses `python3` as its default Python interpreter.

### How was this patch tested?

It was tested together in https://github.com/apache/spark/pull/30735. The test cases there will verify this change together.

Closes #30750 from HyukjinKwon/SPARK-32447.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-13 10:41:47 +09:00
Dongjoon Hyun de9818f043
[SPARK-33662][BUILD] Setting version to 3.2.0-SNAPSHOT
### What changes were proposed in this pull request?

This PR aims to update `master` branch version to 3.2.0-SNAPSHOT.

### Why are the changes needed?

Start to prepare Apache Spark 3.2.0.

### Does this PR introduce _any_ user-facing change?

N/A.

### How was this patch tested?

Pass the CIs.

Closes #30606 from dongjoon-hyun/SPARK-3.2.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-12-04 14:10:42 -08:00
HyukjinKwon 990bee9c58 [SPARK-33615][K8S] Make 'spark.archives' working in Kubernates
### What changes were proposed in this pull request?

This PR proposes to make `spark.archives` configuration working in Kubernates.
It works without a problem in standalone cluster but there seems a bug in Kubernates.
It fails to fetch the file on the driver side as below:

```
20/12/03 13:33:53 INFO SparkContext: Added JAR file:/tmp/spark-75004286-c83a-4369-b624-14c5d2d2a748/spark-examples_2.12-3.1.0-SNAPSHOT.jar at spark://spark-test-app-48ae737628cee6f8-driver-svc.spark-integration-test.svc:7078/jars/spark-examples_2.12-3.1.0-SNAPSHOT.jar with timestamp 1607002432558
20/12/03 13:33:53 INFO SparkContext: Added archive file:///tmp/tmp4542734800151332666.txt.tar.gz#test_tar_gz at spark://spark-test-app-48ae737628cee6f8-driver-svc.spark-integration-test.svc:7078/files/tmp4542734800151332666.txt.tar.gz with timestamp 1607002432558
20/12/03 13:33:53 INFO TransportClientFactory: Successfully created connection to spark-test-app-48ae737628cee6f8-driver-svc.spark-integration-test.svc/172.17.0.4:7078 after 83 ms (47 ms spent in bootstraps)
20/12/03 13:33:53 INFO Utils: Fetching spark://spark-test-app-48ae737628cee6f8-driver-svc.spark-integration-test.svc:7078/files/tmp4542734800151332666.txt.tar.gz to /tmp/spark-66573e24-27a3-427c-99f4-36f06d9e9cd5/fetchFileTemp2665785666227461849.tmp
20/12/03 13:33:53 ERROR SparkContext: Error initializing SparkContext.
java.lang.RuntimeException: Stream '/files/tmp4542734800151332666.txt.tar.gz' was not found.
	at org.apache.spark.network.client.TransportResponseHandler.handle(TransportResponseHandler.java:242)
	at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:142)
	at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:53)
```

This is because `spark.archives` was not actually added on the driver side correctly. The changes here fix it by adding and resolving URIs correctly.

### Why are the changes needed?

`spark.archives` feature can be leveraged for many things such as Conda support. We should make it working in Kubernates as well.
This is a bug fix too.

### Does this PR introduce _any_ user-facing change?

No, this feature is not out yet.

### How was this patch tested?

I manually tested with Minikube 1.15.1. For an environment issue (?), I had to use a custom namespace, service account and roles. `default` service account does not work for me and complains it doesn't have permissions to get/list pods, etc.

```bash
minikube delete
minikube start --cpus 12 --memory 16384
kubectl create namespace spark-integration-test
cat <<EOF | kubectl apply -f -
apiVersion: v1
kind: ServiceAccount
metadata:
  name: spark
  namespace: spark-integration-test
EOF
kubectl create clusterrolebinding spark-role --clusterrole=edit --serviceaccount=spark-integration-test:spark --namespace=spark-integration-test
dev/make-distribution.sh --pip --tgz -Pkubernetes
resource-managers/kubernetes/integration-tests/dev/dev-run-integration-tests.sh --spark-tgz `pwd`/spark-3.1.0-SNAPSHOT-bin-3.2.0.tgz  --service-account spark --namespace spark-integration-test
```

Closes #30581 from HyukjinKwon/SPARK-33615.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-04 19:37:03 +09:00
Gabor Somogyi bd711863fd [SPARK-33629][PYTHON] Make spark.buffer.size configuration visible on driver side
### What changes were proposed in this pull request?
`spark.buffer.size` not applied in driver from pyspark. In this PR I've fixed this issue.

### Why are the changes needed?
Apply the mentioned config on driver side.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Existing unit tests + manually.

Added the following code temporarily:
```
def local_connect_and_auth(port, auth_secret):
...
            sock.connect(sa)
            print("SPARK_BUFFER_SIZE: %d" % int(os.environ.get("SPARK_BUFFER_SIZE", 65536))) <- This is the addition
            sockfile = sock.makefile("rwb", int(os.environ.get("SPARK_BUFFER_SIZE", 65536)))
...
```

Test:
```
#Compile Spark

echo "spark.buffer.size 10000" >> conf/spark-defaults.conf

$ ./bin/pyspark
Python 3.8.5 (default, Jul 21 2020, 10:48:26)
[Clang 11.0.3 (clang-1103.0.32.62)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
20/12/03 13:38:13 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
20/12/03 13:38:14 WARN SparkEnv: I/O encryption enabled without RPC encryption: keys will be visible on the wire.
Welcome to
      ____              __
     / __/__  ___ _____/ /__
    _\ \/ _ \/ _ `/ __/  '_/
   /__ / .__/\_,_/_/ /_/\_\   version 3.1.0-SNAPSHOT
      /_/

Using Python version 3.8.5 (default, Jul 21 2020 10:48:26)
Spark context Web UI available at http://192.168.0.189:4040
Spark context available as 'sc' (master = local[*], app id = local-1606999094506).
SparkSession available as 'spark'.
>>> sc.setLogLevel("TRACE")
>>> sc.parallelize([0, 2, 3, 4, 6], 5).glom().collect()
...
SPARK_BUFFER_SIZE: 10000
...
[[0], [2], [3], [4], [6]]
>>>
```

Closes #30592 from gaborgsomogyi/SPARK-33629.

Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-04 01:37:44 +09:00
yangjie01 92bfbcb2e3
[SPARK-33631][DOCS][TEST] Clean up spark.core.connection.ack.wait.timeout from configuration.md
### What changes were proposed in this pull request?
SPARK-9767  remove `ConnectionManager` and related files, the configuration `spark.core.connection.ack.wait.timeout` previously used by `ConnectionManager` is no longer used by other Spark code, but it still exists in the `configuration.md`.

So this pr cleans up the useless configuration item spark.core.connection.ack.wait.timeout` from `configuration.md`.

### Why are the changes needed?
Clean up useless configuration from `configuration.md`.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Pass the Jenkins or GitHub Action

Closes #30569 from LuciferYang/SPARK-33631.

Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-12-02 12:58:41 -08:00
neko 28dad1ba77 [SPARK-33504][CORE] The application log in the Spark history server contains sensitive attributes should be redacted
### What changes were proposed in this pull request?
To make sure the sensitive attributes to be redacted in the history server log.

### Why are the changes needed?
We found the secure attributes like password  in SparkListenerJobStart and SparkListenerStageSubmitted events would not been redated, resulting in sensitive attributes can be viewd directly.
The screenshot can be viewed in the attachment of JIRA spark-33504
### Does this PR introduce _any_ user-facing change?
no

### How was this patch tested?
muntual test works well, I have also added unit testcase.

Closes #30446 from akiyamaneko/eventlog_unredact.

Authored-by: neko <echohlne@gmail.com>
Signed-off-by: Thomas Graves <tgraves@apache.org>
2020-12-02 09:24:19 -06:00
yangjie01 084d38b64e [SPARK-33557][CORE][MESOS][TEST] Ensure the relationship between STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT and NETWORK_TIMEOUT
### What changes were proposed in this pull request?
As described in SPARK-33557, `HeartbeatReceiver` and `MesosCoarseGrainedSchedulerBackend` will always use `Network.NETWORK_TIMEOUT.defaultValueString` as value of `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` when we configure `NETWORK_TIMEOUT` without configure `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT`, this is different from the relationship described in `configuration.md`.

To fix this problem,the main change of this pr as follow:

- Remove the explicitly default value of `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT`

- Use actual value of `NETWORK_TIMEOUT` as `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` when `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` not configured in `HeartbeatReceiver` and `MesosCoarseGrainedSchedulerBackend`

### Why are the changes needed?
To ensure the relationship between `NETWORK_TIMEOUT` and  `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` as we described in `configuration.md`

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?

- Pass the Jenkins or GitHub Action

- Manual test configure `NETWORK_TIMEOUT` and `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` locally

Closes #30547 from LuciferYang/SPARK-33557.

Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-02 18:41:49 +09:00
Dongjoon Hyun 290aa02179 [SPARK-33618][CORE] Use hadoop-client instead of hadoop-client-api to make hadoop-aws work
### What changes were proposed in this pull request?

This reverts commit SPARK-33212 (cb3fa6c936) mostly with three exceptions:
1. `SparkSubmitUtils` was updated recently by SPARK-33580
2. `resource-managers/yarn/pom.xml` was updated recently by SPARK-33104 to add `hadoop-yarn-server-resourcemanager` test dependency.
3. Adjust `com.fasterxml.jackson.module:jackson-module-jaxb-annotations` dependency in K8s module which is updated recently by SPARK-33471.

### Why are the changes needed?

According to [HADOOP-16080](https://issues.apache.org/jira/browse/HADOOP-16080) since Apache Hadoop 3.1.1, `hadoop-aws` doesn't work with `hadoop-client-api`. It fails at write operation like the following.

**1. Spark distribution with `-Phadoop-cloud`**

```scala
$ bin/spark-shell --conf spark.hadoop.fs.s3a.access.key=$AWS_ACCESS_KEY_ID --conf spark.hadoop.fs.s3a.secret.key=$AWS_SECRET_ACCESS_KEY
20/11/30 23:01:24 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
Spark context available as 'sc' (master = local[*], app id = local-1606806088715).
Spark session available as 'spark'.
Welcome to
      ____              __
     / __/__  ___ _____/ /__
    _\ \/ _ \/ _ `/ __/  '_/
   /___/ .__/\_,_/_/ /_/\_\   version 3.1.0-SNAPSHOT
      /_/

Using Scala version 2.12.10 (OpenJDK 64-Bit Server VM, Java 1.8.0_272)
Type in expressions to have them evaluated.
Type :help for more information.

scala> spark.read.parquet("s3a://dongjoon/users.parquet").show
20/11/30 23:01:34 WARN MetricsConfig: Cannot locate configuration: tried hadoop-metrics2-s3a-file-system.properties,hadoop-metrics2.properties
+------+--------------+----------------+
|  name|favorite_color|favorite_numbers|
+------+--------------+----------------+
|Alyssa|          null|  [3, 9, 15, 20]|
|   Ben|           red|              []|
+------+--------------+----------------+

scala> Seq(1).toDF.write.parquet("s3a://dongjoon/out.parquet")
20/11/30 23:02:14 ERROR Executor: Exception in task 0.0 in stage 2.0 (TID 2)/ 1]
java.lang.NoSuchMethodError: org.apache.hadoop.util.SemaphoredDelegatingExecutor.<init>(Lcom/google/common/util/concurrent/ListeningExecutorService;IZ)V
```

**2. Spark distribution without `-Phadoop-cloud`**
```scala
$ bin/spark-shell --conf spark.hadoop.fs.s3a.access.key=$AWS_ACCESS_KEY_ID --conf spark.hadoop.fs.s3a.secret.key=$AWS_SECRET_ACCESS_KEY -c spark.eventLog.enabled=true -c spark.eventLog.dir=s3a://dongjoon/spark-events/ --packages org.apache.hadoop:hadoop-aws:3.2.0,org.apache.hadoop:hadoop-common:3.2.0
...
java.lang.NoSuchMethodError: org.apache.hadoop.util.SemaphoredDelegatingExecutor.<init>(Lcom/google/common/util/concurrent/ListeningExecutorService;IZ)V
  at org.apache.hadoop.fs.s3a.S3AFileSystem.create(S3AFileSystem.java:772)
```

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the CI.

Closes #30508 from dongjoon-hyun/SPARK-33212-REVERT.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-02 18:23:48 +09:00
Gengliang Wang 5d0045eedf [SPARK-33611][UI] Avoid encoding twice on the query parameter of rewritten proxy URL
### What changes were proposed in this pull request?

When running Spark behind a reverse proxy(e.g. Nginx, Apache HTTP server), the request URL can be encoded twice if we pass the query string directly to the constructor of `java.net.URI`:
```
> val uri = "http://localhost:8081/test"
> val query = "order%5B0%5D%5Bcolumn%5D=0"  // query string of URL from the reverse proxy
> val rewrittenURI = URI.create(uri.toString())

> new URI(rewrittenURI.getScheme(),
      rewrittenURI.getAuthority(),
      rewrittenURI.getPath(),
      query,
      rewrittenURI.getFragment()).toString
result: http://localhost:8081/test?order%255B0%255D%255Bcolumn%255D=0
```

In Spark's stage page, the URL of "/taskTable" contains query parameter order[0][dir]. After encoding twice, the query parameter becomes `order%255B0%255D%255Bdir%255D` and it will be decoded as `order%5B0%5D%5Bdir%5D` instead of `order[0][dir]`. As a result, there will be NullPointerException from https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/status/api/v1/StagesResource.scala#L176
Other than that, the other parameter may not work as expected after encoded twice.

This PR is to fix the bug by calling the method `URI.create(String URL)` directly. This convenience method can avoid encoding twice on the query parameter.
```
> val uri = "http://localhost:8081/test"
> val query = "order%5B0%5D%5Bcolumn%5D=0"
> URI.create(s"$uri?$query").toString
result: http://localhost:8081/test?order%5B0%5D%5Bcolumn%5D=0

> URI.create(s"$uri?$query").getQuery
result: order[0][column]=0
```

### Why are the changes needed?

Fix a potential bug when Spark's reverse proxy is enabled.
The bug itself is similar to https://github.com/apache/spark/pull/29271.

### Does this PR introduce _any_ user-facing change?

No

### How was this patch tested?

Add a new unit test.
Also, Manual UI testing for master, worker and app UI with an nginx proxy

Spark config:
```
spark.ui.port 8080
spark.ui.reverseProxy=true
spark.ui.reverseProxyUrl=/path/to/spark/
```
nginx config:
```
server {
    listen 9000;
    set $SPARK_MASTER http://127.0.0.1:8080;
    # split spark UI path into prefix and local path within master UI
    location ~ ^(/path/to/spark/) {
        # strip prefix when forwarding request
        rewrite /path/to/spark(/.*) $1  break;
        #rewrite /path/to/spark/ "/" ;
        # forward to spark master UI
        proxy_pass $SPARK_MASTER;
        proxy_intercept_errors on;
        error_page 301 302 307 = handle_redirects;
    }
    location handle_redirects {
        set $saved_redirect_location '$upstream_http_location';
        proxy_pass $saved_redirect_location;
    }
}
```

Closes #30552 from gengliangwang/decodeProxyRedirect.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
2020-12-02 01:36:41 +08:00
HyukjinKwon 1a042cc414 [SPARK-33530][CORE] Support --archives and spark.archives option natively
### What changes were proposed in this pull request?

TL;DR:
- This PR completes the support of archives in Spark itself instead of Yarn-only
  - It makes `--archives` option work in other cluster modes too and adds `spark.archives` configuration.
-  After this PR, PySpark users can leverage Conda to ship Python packages together as below:
    ```python
    conda create -y -n pyspark_env -c conda-forge pyarrow==2.0.0 pandas==1.1.4 conda-pack==0.5.0
    conda activate pyspark_env
    conda pack -f -o pyspark_env.tar.gz
    PYSPARK_DRIVER_PYTHON=python PYSPARK_PYTHON=./environment/bin/python pyspark --archives pyspark_env.tar.gz#environment
   ```
- Issue a warning that undocumented and hidden behavior of partial archive handling in `spark.files` / `SparkContext.addFile` will be deprecated, and users can use `spark.archives` and `SparkContext.addArchive`.

This PR proposes to add Spark's native `--archives` in Spark submit, and `spark.archives` configuration. Currently, both are supported only in Yarn mode:

```bash
./bin/spark-submit --help
```

```
Options:
...
 Spark on YARN only:
  --queue QUEUE_NAME          The YARN queue to submit to (Default: "default").
  --archives ARCHIVES         Comma separated list of archives to be extracted into the
                              working directory of each executor.
```

This `archives` feature is useful often when you have to ship a directory and unpack into executors. One example is native libraries to use e.g. JNI. Another example is to ship Python packages together by Conda environment.

Especially for Conda, PySpark currently does not have a nice way to ship a package that works in general, please see also https://hyukjin-spark.readthedocs.io/en/stable/user_guide/python_packaging.html#using-zipped-virtual-environment (PySpark new documentation demo for 3.1.0).

The neatest way is arguably to use Conda environment by shipping zipped Conda environment but this is currently dependent on this archive feature. NOTE that we are able to use `spark.files` by relying on its undocumented behaviour that untars `tar.gz` but I don't think we should document such ways and promote people to more rely on it.

Also, note that this PR does not target to add the feature parity of `spark.files.overwrite`, `spark.files.useFetchCache`, etc. yet. I documented that this is an experimental feature as well.

### Why are the changes needed?

To complete the feature parity, and to provide a better support of shipping Python libraries together with Conda env.

### Does this PR introduce _any_ user-facing change?

Yes, this makes `--archives` works in Spark instead of Yarn-only, and adds a new configuration `spark.archives`.

### How was this patch tested?

I added unittests. Also, manually tested in standalone cluster, local-cluster, and local modes.

Closes #30486 from HyukjinKwon/native-archive.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-01 13:43:02 +09:00
Jungtaek Lim (HeartSaVioR) f5d2165c95 [SPARK-33440][CORE] Use current timestamp with warning log in HadoopFSDelegationTokenProvider when the issue date for token is not set up properly
### What changes were proposed in this pull request?

This PR proposes to use current timestamp with warning log when the issue date for token is not set up properly. The next section will explain the rationalization with details.

### Why are the changes needed?

Unfortunately not every implementations respect the `issue date` in `AbstractDelegationTokenIdentifier`, which Spark relies on while calculating. The default value of issue date is 0L, which is far from actual issue date, breaking logic on calculating next renewal date under some circumstance, leading to 0 interval (immediate) on rescheduling token renewal.

In HadoopFSDelegationTokenProvider, Spark calculates token renewal interval as below:

2c64b731ae/core/src/main/scala/org/apache/spark/deploy/security/HadoopFSDelegationTokenProvider.scala (L123-L134)

The interval is calculated as `token.renew() - identifier.getIssueDate`, which is providing correct interval assuming both `token.renew()` and `identifier.getIssueDate` produce correct value, but it's going to be weird when `identifier.getIssueDate` provides 0L (default value), like below:

```
20/10/13 06:34:19 INFO security.HadoopFSDelegationTokenProvider: Renewal interval is 1603175657000 for token S3ADelegationToken/IDBroker
20/10/13 06:34:19 INFO security.HadoopFSDelegationTokenProvider: Renewal interval is 86400048 for token HDFS_DELEGATION_TOKEN
```

Hopefully we pick the minimum value as safety guard (so in this case, `86400048` is being picked up), but the safety guard leads unintentional bad impact on this case.

2c64b731ae/core/src/main/scala/org/apache/spark/deploy/security/HadoopFSDelegationTokenProvider.scala (L58-L71)

Spark leverages the interval being calculated in above, "minimum" value of intervals, and blindly adds the value to token's issue date to calculates the next renewal date for the token, and picks "minimum" value again. In problematic case, the value would be `86400048` (86400048 + 0) which is quite smaller than current timestamp.

2c64b731ae/core/src/main/scala/org/apache/spark/deploy/security/HadoopDelegationTokenManager.scala (L228-L234)

The next renewal date is subtracted with current timestamp again to get the interval, and multiplexed by configured ratio to produce the final schedule interval. In problematic case, this value goes to negative.

2c64b731ae/core/src/main/scala/org/apache/spark/deploy/security/HadoopDelegationTokenManager.scala (L180-L188)

There's a safety guard to not allow negative value, but that's simply 0 meaning schedule immediately. This triggers next calculation of next renewal date to calculate the schedule interval, lead to the same behavior, hence updating delegation token immediately and continuously.

As we fetch token just before the calculation happens, the actual issue date is likely slightly before, hence it's not that dangerous to use current timestamp as issue date for the token the issue date has not been set up properly. Still, it's better not to leave the token implementation as it is, so we log warn message to let end users consult with token implementer.

### Does this PR introduce _any_ user-facing change?

Yes. End users won't encounter the tight loop of schedule of token renewal after the PR. In end users' perspective of reflection, there's nothing end users need to change.

### How was this patch tested?

Manually tested with problematic environment.

Closes #30366 from HeartSaVioR/SPARK-33440.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan.opensource@gmail.com>
Signed-off-by: Jungtaek Lim (HeartSaVioR) <kabhwan.opensource@gmail.com>
2020-12-01 06:44:15 +09:00
Dongjoon Hyun c6994354f7
[SPARK-33545][CORE] Support Fallback Storage during Worker decommission
### What changes were proposed in this pull request?

This PR aims to support storage migration to the fallback storage like cloud storage (`S3`) during worker decommission for the corner cases where the exceptions occur or there is no live peer left.

Although this PR focuses on cloud storage like `S3` which has a TTL feature in order to simplify Spark's logic, we can use alternative fallback storages like HDFS/NFS(EFS) if the user provides a clean-up mechanism.

### Why are the changes needed?

Currently, storage migration is not possible when there is no available executor. For example, when there is one executor, the executor cannot perform storage migration because it has no peer.

### Does this PR introduce _any_ user-facing change?

Yes. This is a new feature.

### How was this patch tested?

Pass the CIs with newly added test cases.

Closes #30492 from dongjoon-hyun/SPARK-33545.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-11-30 13:29:50 -08:00
Pascal Gillet 6e5446e61f [SPARK-33579][UI] Fix executor blank page behind proxy
### What changes were proposed in this pull request?

Fix some "hardcoded" API urls in Web UI.
More specifically, we avoid the use of `location.origin` when constructing URLs for internal API calls within the JavaScript.
Instead, we use `apiRoot` global variable.

### Why are the changes needed?

On one hand, it allows us to build relative URLs. On the other hand, `apiRoot` reflects the Spark property `spark.ui.proxyBase` which can be set to change the root path of the Web UI.

If `spark.ui.proxyBase` is actually set, original URLs become incorrect, and we end up with an executors blank page.
I encounter this bug when accessing the Web UI behind a proxy (in my case a Kubernetes Ingress).

See the following link for more context:
https://github.com/jupyterhub/jupyter-server-proxy/issues/57#issuecomment-699163115

### Does this PR introduce _any_ user-facing change?

Yes, as all the changes introduced are in the JavaScript for the Web UI.

### How the changes have been tested ?
I modified/debugged the JavaScript as in the commit with the help of the developer tools in Google Chrome, while accessing the Web UI of my Spark app behind my k8s ingress.

Closes #30523 from pgillet/fix-executors-blank-page-behind-proxy.

Authored-by: Pascal Gillet <pascal.gillet@stack-labs.com>
Signed-off-by: Kousuke Saruta <sarutak@oss.nttdata.com>
2020-11-30 19:31:42 +09:00
Josh Soref 485145326a [MINOR] Spelling bin core docs external mllib repl
### What changes were proposed in this pull request?

This PR intends to fix typos in the sub-modules:
* `bin`
* `core`
* `docs`
* `external`
* `mllib`
* `repl`
* `pom.xml`

Split per srowen https://github.com/apache/spark/pull/30323#issuecomment-728981618

NOTE: The misspellings have been reported at 706a726f87 (commitcomment-44064356)

### Why are the changes needed?

Misspelled words make it harder to read / understand content.

### Does this PR introduce _any_ user-facing change?

There are various fixes to documentation, etc...

### How was this patch tested?

No testing was performed

Closes #30530 from jsoref/spelling-bin-core-docs-external-mllib-repl.

Authored-by: Josh Soref <jsoref@users.noreply.github.com>
Signed-off-by: Takeshi Yamamuro <yamamuro@apache.org>
2020-11-30 13:59:51 +09:00
Shixiong Zhu c8286ec416
[SPARK-33587][CORE] Kill the executor on nested fatal errors
### What changes were proposed in this pull request?

Currently we will kill the executor when hitting a fatal error. However, if the fatal error is wrapped by another exception, such as
- java.util.concurrent.ExecutionException, com.google.common.util.concurrent.UncheckedExecutionException, com.google.common.util.concurrent.ExecutionError when using Guava cache or Java thread pool.
- SparkException thrown from cf98a761de/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/FileFormatWriter.scala (L231) or cf98a761de/sql/core/src/main/scala/org/apache/spark/sql/execution/datasources/FileFormatWriter.scala (L296)

We will still keep the executor running. Fatal errors are usually unrecoverable (such as OutOfMemoryError), some components may be in a broken state when hitting a fatal error and it's hard to predicate the behaviors of a broken component. Hence, it's better to detect the nested fatal error as well and kill the executor. Then we can rely on Spark's fault tolerance to recover.

### Why are the changes needed?

Fatal errors are usually unrecoverable (such as OutOfMemoryError), some components may be in a broken state when hitting a fatal error and it's hard to predicate the behaviors of a broken component. Hence, it's better to detect the nested fatal error as well and kill the executor. Then we can rely on Spark's fault tolerance to recover.

### Does this PR introduce _any_ user-facing change?

Yep. There is a slight internal behavior change on when to kill an executor. We will kill the executor when detecting a nested fatal error in the exception chain. `spark.executor.killOnFatalError.depth` is added to allow users to turn off this change if the slight behavior change impacts them.

### How was this patch tested?

The new method `Executor.isFatalError` is tested by `spark.executor.killOnNestedFatalError`.

Closes #30528 from zsxwing/SPARK-33587.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-11-29 11:56:48 -08:00
Liang-Chi Hsieh 3650a6bd97
[SPARK-33580][CORE] resolveDependencyPaths should use classifier attribute of artifact
### What changes were proposed in this pull request?

This patch proposes to use classifier attribute to construct artifact path instead of type.

### Why are the changes needed?

`resolveDependencyPaths` now takes artifact type to decide to add "-tests" postfix. However, the path pattern of ivy in `resolveMavenCoordinates` is `[organization]_[artifact][revision](-[classifier]).[ext]`. We should use classifier instead of type to construct file path.

### Does this PR introduce _any_ user-facing change?

No

### How was this patch tested?

Unit test. Manual test.

Closes #30524 from viirya/SPARK-33580.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-11-28 12:47:47 -08:00
Gengliang Wang 919ea45e89 [SPARK-33562][UI] Improve the style of the checkbox in executor page
### What changes were proposed in this pull request?

1. Remove the fixed width style of class `container-fluid-div`. So that the UI looks clean when the text is long.
2. Add one space between a checkbox and the text on the right side, which is consistent with the stage page.

### Why are the changes needed?

The width of class `container-fluid-div` is set as 200px after https://github.com/apache/spark/pull/21688 . This makes the checkbox in the executor page messy.
![image](https://user-images.githubusercontent.com/1097932/100242069-3bc5ab80-2ee9-11eb-8c7d-96c221398fee.png)

We should remove the width limit.

### Does this PR introduce _any_ user-facing change?

No
### How was this patch tested?

Manual test.
After the changes:
![image](https://user-images.githubusercontent.com/1097932/100257802-2f4a4e80-2efb-11eb-9eb0-92d6988ad14b.png)

Closes #30500 from gengliangwang/reviseStyle.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-11-26 10:19:38 +09:00
duripeng 7c59aeeef4 [SPARK-27194][SPARK-29302][SQL] Fix commit collision in dynamic partition overwrite mode
### What changes were proposed in this pull request?

When using dynamic partition overwrite, each task has its working dir under staging dir like `stagingDir/.spark-staging-{jobId}`, each task commits to `outputPath/.spark-staging-{jobId}/{partitionId}/part-{taskId}-{jobId}{ext}`.
When speculation enable, multiple task attempts would be setup for one task, **they have same task id and they would commit to same file concurrently**. Due to host done or node preemption, the partly-committed files aren't cleaned up, a FileAlreadyExistsException would be raised in this situation, resulting in job failure.

I don't try to change task commit process for dynamic partition overwrite, like adding attempt id to task working dir for each attempts and committing to final output dir via a new outputCommitCoordinator, here is reason:

1. `FileOutputCommitter` already has commit coordinator for each task attempts, we can leverage it rather than build a new one.
2. To say the least, we implement a coordinator solving task attempts commit conflict, suppose a severe case, application master failover, tasks with same attempt id and same task id would commit to same files, the `FileAlreadyExistsException` risk still exists

In this pr, I leverage FileOutputCommitter to solve the problem:

1. when initing a write job description, set `outputPath/.spark-staging-{jobId}` as the output dir
2. each task attempt writes output to `outputPath/.spark-staging-{jobId}/_temporary/${appAttemptId}/_temporary/${taskAttemptId}/{partitionId}/part-{taskId}-{jobId}{ext}`
3. leverage `FileOutputCommitter` coordinator, write job firstly commits output to `outputPath/.spark-staging-{jobId}/{partitionId}`
4. for dynamic partition overwrite, write job finally move `outputPath/.spark-staging-{jobId}/{partitionId}` to `outputPath/{partitionId}`

### Why are the changes needed?

Without this pr, dynamic partition overwrite would fail

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

added UT.

Closes #29000 from WinkerDu/master-fix-dynamic-partition-multi-commit.

Authored-by: duripeng <duripeng@baidu.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-11-25 12:50:21 +00:00
Dongjoon Hyun 3ce4ab545b
[SPARK-33513][BUILD] Upgrade to Scala 2.13.4 to improve exhaustivity
### What changes were proposed in this pull request?

This PR aims the followings.
1. Upgrade from Scala 2.13.3 to 2.13.4 for Apache Spark 3.1
2. Fix exhaustivity issues in both Scala 2.12/2.13 (Scala 2.13.4 requires this for compilation.)
3. Enforce the improved exhaustive check by using the existing Scala 2.13 GitHub Action compilation job.

### Why are the changes needed?

Scala 2.13.4 is a maintenance release for 2.13 line and improves JDK 15 support.
- https://github.com/scala/scala/releases/tag/v2.13.4

Also, it improves exhaustivity check.
- https://github.com/scala/scala/pull/9140 (Check exhaustivity of pattern matches with "if" guards and custom extractors)
- https://github.com/scala/scala/pull/9147 (Check all bindings exhaustively, e.g. tuples components)

### Does this PR introduce _any_ user-facing change?

Yep. Although it's a maintenance version change, it's a Scala version change.

### How was this patch tested?

Pass the CIs and do the manual testing.
- Scala 2.12 CI jobs(GitHub Action/Jenkins UT/Jenkins K8s IT) to check the validity of code change.
- Scala 2.13 Compilation job to check the compilation

Closes #30455 from dongjoon-hyun/SCALA_3.13.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-11-23 16:28:43 -08:00
Xiao Li c891e025b8 Revert "[SPARK-32481][CORE][SQL] Support truncate table to move data to trash"
### What changes were proposed in this pull request?

This reverts commit 065f17386d, which is not part of any released version. That is, this is an unreleased feature

### Why are the changes needed?

I like the concept of Trash, but I think this PR might just resolve a very specific issue by introducing a mechanism without a proper design doc. This could make the usage more complex.

I think we need to consider the big picture. Trash directory is an important concept. If we decide to introduce it, we should consider all the code paths of Spark SQL that could delete the data, instead of Truncate only. We also need to consider what is the current behavior if the underlying file system does not provide the API `Trash.moveToAppropriateTrash`. Is the exception good? How about the performance when users are using the object store instead of HDFS? Will it impact the GDPR compliance?

In sum, I think we should not merge the PR https://github.com/apache/spark/pull/29552 without the design doc and implementation plan. That is why I reverted it before the code freeze of Spark 3.1

### Does this PR introduce _any_ user-facing change?
Reverted the original commit

### How was this patch tested?
The existing tests.

Closes #30463 from gatorsmile/revertSpark-32481.

Authored-by: Xiao Li <gatorsmile@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-11-23 17:43:58 +09:00
Gabor Somogyi 0bb911d979 [SPARK-33143][PYTHON] Add configurable timeout to python server and client
### What changes were proposed in this pull request?
Spark creates local server to serialize several type of data for python. The python code tries to connect to the server, immediately after it's created but there are several system calls in between (this may change in each Spark version):
* getaddrinfo
* socket
* settimeout
* connect

Under some circumstances in heavy user environments these calls can be super slow (more than 15 seconds). These issues must be analyzed one-by-one but since these are system calls the underlying OS and/or DNS servers must be debugged and fixed. This is not trivial task and at the same time data processing must work somehow. In this PR I'm only intended to add a configuration possibility to increase the mentioned timeouts in order to be able to provide temporary workaround. The rootcause analysis is ongoing but I think this can vary in each case.

Because the server part doesn't contain huge amount of log entries to with one can measure time, I've added some.

### Why are the changes needed?
Provide workaround when localhost python server connection timeout appears.

### Does this PR introduce _any_ user-facing change?
Yes, new configuration added.

### How was this patch tested?
Existing unit tests + manual test.
```
#Compile Spark

echo "spark.io.encryption.enabled true" >> conf/spark-defaults.conf
echo "spark.python.authenticate.socketTimeout 10" >> conf/spark-defaults.conf

$ ./bin/pyspark
Python 3.8.5 (default, Jul 21 2020, 10:48:26)
[Clang 11.0.3 (clang-1103.0.32.62)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
20/11/20 10:17:03 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
20/11/20 10:17:03 WARN SparkEnv: I/O encryption enabled without RPC encryption: keys will be visible on the wire.
Welcome to
      ____              __
     / __/__  ___ _____/ /__
    _\ \/ _ \/ _ `/ __/  '_/
   /__ / .__/\_,_/_/ /_/\_\   version 3.1.0-SNAPSHOT
      /_/

Using Python version 3.8.5 (default, Jul 21 2020 10:48:26)
Spark context Web UI available at http://192.168.0.189:4040
Spark context available as 'sc' (master = local[*], app id = local-1605863824276).
SparkSession available as 'spark'.
>>> sc.setLogLevel("TRACE")
>>> sc.parallelize([0, 2, 3, 4, 6], 5).glom().collect()
20/11/20 10:17:09 TRACE PythonParallelizeServer: Creating listening socket
20/11/20 10:17:09 TRACE PythonParallelizeServer: Setting timeout to 10 sec
20/11/20 10:17:09 TRACE PythonParallelizeServer: Waiting for connection on port 59726
20/11/20 10:17:09 TRACE PythonParallelizeServer: Connection accepted from address /127.0.0.1:59727
20/11/20 10:17:09 TRACE PythonParallelizeServer: Client authenticated
20/11/20 10:17:09 TRACE PythonParallelizeServer: Closing server
...
20/11/20 10:17:10 TRACE SocketFuncServer: Creating listening socket
20/11/20 10:17:10 TRACE SocketFuncServer: Setting timeout to 10 sec
20/11/20 10:17:10 TRACE SocketFuncServer: Waiting for connection on port 59735
20/11/20 10:17:10 TRACE SocketFuncServer: Connection accepted from address /127.0.0.1:59736
20/11/20 10:17:10 TRACE SocketFuncServer: Client authenticated
20/11/20 10:17:10 TRACE SocketFuncServer: Closing server
[[0], [2], [3], [4], [6]]
>>>
```

Closes #30389 from gaborgsomogyi/SPARK-33143.

Lead-authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Co-authored-by: Hyukjin Kwon <gurwls223@gmail.com>
Co-authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-11-23 15:19:34 +09:00
Chao Sun b623c03456
[SPARK-32381][CORE][FOLLOWUP][TEST-HADOOP2.7] Don't remove SerializableFileStatus and SerializableBlockLocation for Hadoop 2.7
### What changes were proposed in this pull request?

Revert the change in #29959 and don't remove `SerializableFileStatus` and `SerializableBlockLocation`.

### Why are the changes needed?

In Hadoop 2.7 `FileStatus` and `BlockLocation` are not serializable, so we still need the two wrapper classes.

### Does this PR introduce _any_ user-facing change?

No

### How was this patch tested?

N/A

Closes #30447 from sunchao/SPARK-32381-followup.

Authored-by: Chao Sun <sunchao@apple.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-11-20 18:45:17 -08:00
Venkata krishnan Sowrirajan 8218b48803 [SPARK-32919][SHUFFLE][TEST-MAVEN][TEST-HADOOP2.7] Driver side changes for coordinating push based shuffle by selecting external shuffle services for merging partitions
### What changes were proposed in this pull request?
Driver side changes for coordinating push based shuffle by selecting external shuffle services for merging partitions.

This PR includes changes related to `ShuffleMapStage` preparation which is selection of merger locations and initializing them as part of `ShuffleDependency`.

Currently this code is not used as some of the changes would come subsequently as part of https://issues.apache.org/jira/browse/SPARK-32917 (shuffle blocks push as part of `ShuffleMapTask`), https://issues.apache.org/jira/browse/SPARK-32918 (support for finalize API) and https://issues.apache.org/jira/browse/SPARK-32920 (finalization of push/merge phase). This is why the tests here are also partial, once these above mentioned changes are raised as PR we will have enough tests for DAGScheduler piece of code as well.

### Why are the changes needed?
Added a new API in `SchedulerBackend` to get merger locations for push based shuffle. This is currently implemented for Yarn and other cluster managers can have separate implementations which is why a new API is introduced.

### Does this PR introduce _any_ user-facing change?
Yes, user facing config to enable push based shuffle is introduced

### How was this patch tested?
Added unit tests partially and some of the changes in DAGScheduler depends on future changes, DAGScheduler tests will be added along with those changes.

Lead-authored-by: Venkata krishnan Sowrirajan vsowrirajanlinkedin.com
Co-authored-by: Min Shen mshenlinkedin.com

Closes #30164 from venkata91/upstream-SPARK-32919.

Lead-authored-by: Venkata krishnan Sowrirajan <vsowrirajan@linkedin.com>
Co-authored-by: Min Shen <mshen@linkedin.com>
Signed-off-by: Mridul Muralidharan <mridul<at>gmail.com>
2020-11-20 06:00:30 -06:00
yangjie01 e3058ba17c [SPARK-33441][BUILD] Add unused-imports compilation check and remove all unused-imports
### What changes were proposed in this pull request?
This pr add a new Scala compile arg to `pom.xml` to defense against new unused imports:

- `-Ywarn-unused-import` for Scala 2.12
- `-Wconf:cat=unused-imports:e` for Scala 2.13

The other fIles change are remove all unused imports in Spark code

### Why are the changes needed?
Cleanup code and add guarantee to defense against new unused imports

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Pass the Jenkins or GitHub Action

Closes #30351 from LuciferYang/remove-imports-core-module.

Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-11-19 14:20:39 +09:00
Chao Sun 27cd945c15 [SPARK-32381][CORE][SQL][FOLLOWUP] More cleanup on HadoopFSUtils
### What changes were proposed in this pull request?

This PR is a follow-up of #29471 and does the following improvements for `HadoopFSUtils`:
1. Removes the extra `filterFun` from the listing API and combines it with the `filter`.
2. Removes `SerializableBlockLocation` and `SerializableFileStatus` given that `BlockLocation` and `FileStatus` are already serializable.
3. Hides the `isRootLevel` flag from the top-level API.

### Why are the changes needed?

Main purpose is to simplify the logic within `HadoopFSUtils` as well as cleanup the API.

### Does this PR introduce _any_ user-facing change?

No

### How was this patch tested?

Existing unit tests (e.g., `FileIndexSuite`)

Closes #29959 from sunchao/hadoop-fs-utils-followup.

Authored-by: Chao Sun <sunchao@apple.com>
Signed-off-by: Holden Karau <hkarau@apple.com>
2020-11-18 12:39:00 -08:00
Stavros Kontopoulos dcac78e12b
[SPARK-27936][K8S] Support python deps
Supports python client deps from the launcher fs.
This is a feature that was added for java deps. This PR adds support fo rpythona s well.

yes

Manually running different scenarios and via examining the driver & executors logs. Also there is an integration test added.
I verified that the python resources are added to the spark file server and they are named properly so they dont fail the executors. Note here that as previously the following will not work:
primary resource `A.py`: uses a closure defined in submited pyfile `B.py`, context.py only adds to the pythonpath files with certain extension eg. zip, egg, jar.

Closes #25870 from skonto/python-deps.

Lead-authored-by: Stavros Kontopoulos <skontopo@redhat.com>
Co-authored-by: Stavros Kontopoulos <st.kontopoulos@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-11-18 10:43:41 -08:00
Dongjoon Hyun 594c7c613a
[SPARK-33476][CORE] Generalize ExecutorSource to expose user-given file system schemes
### What changes were proposed in this pull request?

This PR aims to generalize executor metrics to support user-given file system schemes instead of the fixed `file,hdfs` scheme.

### Why are the changes needed?

For the users using only cloud storages like `S3A`, we need to be able to expose `S3A` metrics. Also, we can skip unused `hdfs` metrics.

### Does this PR introduce _any_ user-facing change?

Yes, but compatible for the existing users which uses `hdfs` and `file` filesystem scheme only.

### How was this patch tested?

Manually do the following.

```
$ build/sbt -Phadoop-cloud package
$ sbin/start-master.sh; sbin/start-slave.sh spark://$(hostname):7077
$ bin/spark-shell --master spark://$(hostname):7077 -c spark.executor.metrics.fileSystemSchemes=file,s3a -c spark.metrics.conf.executor.sink.jmx.class=org.apache.spark.metrics.sink.JmxSink
scala> spark.read.textFile("s3a://dongjoon/README.md").collect()
```

Separately, launch `jconsole` and check `*.executor.filesystem.s3a.*`. Also, confirm that there is no `*.executor.filesystem.hdfs.*`

```
$ jconsole
```
![Screen Shot 2020-11-17 at 9 26 03 PM](https://user-images.githubusercontent.com/9700541/99487609-94121180-291b-11eb-9ed2-964546146981.png)

Closes #30405 from dongjoon-hyun/SPARK-33476.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-11-18 08:04:14 -08:00
HyukjinKwon e2c7bfce40 [SPARK-33407][PYTHON] Simplify the exception message from Python UDFs (disabled by default)
### What changes were proposed in this pull request?

This PR proposes to simplify the exception messages from Python UDFS.

Currently, the exception message from Python UDFs is as below:

```python
from pyspark.sql.functions import udf; spark.range(10).select(udf(lambda x: x/0)("id")).collect()
```

```python
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/.../python/pyspark/sql/dataframe.py", line 427, in show
    print(self._jdf.showString(n, 20, vertical))
  File "/.../python/lib/py4j-0.10.9-src.zip/py4j/java_gateway.py", line 1305, in __call__
  File "/.../python/pyspark/sql/utils.py", line 127, in deco
    raise_from(converted)
  File "<string>", line 3, in raise_from
pyspark.sql.utils.PythonException:
  An exception was thrown from Python worker in the executor:
Traceback (most recent call last):
  File "/.../python/lib/pyspark.zip/pyspark/worker.py", line 605, in main
    process()
  File "/.../python/lib/pyspark.zip/pyspark/worker.py", line 597, in process
    serializer.dump_stream(out_iter, outfile)
  File "/.../python/lib/pyspark.zip/pyspark/serializers.py", line 223, in dump_stream
    self.serializer.dump_stream(self._batched(iterator), stream)
  File "/.../python/lib/pyspark.zip/pyspark/serializers.py", line 141, in dump_stream
    for obj in iterator:
  File "/.../python/lib/pyspark.zip/pyspark/serializers.py", line 212, in _batched
    for item in iterator:
  File "/.../python/lib/pyspark.zip/pyspark/worker.py", line 450, in mapper
    result = tuple(f(*[a[o] for o in arg_offsets]) for (arg_offsets, f) in udfs)
  File "/.../python/lib/pyspark.zip/pyspark/worker.py", line 450, in <genexpr>
    result = tuple(f(*[a[o] for o in arg_offsets]) for (arg_offsets, f) in udfs)
  File "/.../python/lib/pyspark.zip/pyspark/worker.py", line 90, in <lambda>
    return lambda *a: f(*a)
  File "/.../python/lib/pyspark.zip/pyspark/util.py", line 107, in wrapper
    return f(*args, **kwargs)
  File "<stdin>", line 1, in <lambda>
ZeroDivisionError: division by zero
```

Actually, almost all cases, users only care about `ZeroDivisionError: division by zero`. We don't really have to show the internal stuff in 99% cases.

This PR adds a configuration `spark.sql.execution.pyspark.udf.simplifiedException.enabled` (disabled by default) that hides the internal tracebacks related to Python worker, (de)serialization, etc.

```python
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/.../python/pyspark/sql/dataframe.py", line 427, in show
    print(self._jdf.showString(n, 20, vertical))
  File "/.../python/lib/py4j-0.10.9-src.zip/py4j/java_gateway.py", line 1305, in __call__
  File "/.../python/pyspark/sql/utils.py", line 127, in deco
    raise_from(converted)
  File "<string>", line 3, in raise_from
pyspark.sql.utils.PythonException:
  An exception was thrown from Python worker in the executor:
Traceback (most recent call last):
  File "<stdin>", line 1, in <lambda>
ZeroDivisionError: division by zero
```

The trackback will be shown from the point when any non-PySpark file is seen in the traceback.

### Why are the changes needed?

Without this configuration. such internal tracebacks are exposed to users directly especially for shall or notebook users in PySpark. 99% cases people don't care about the internal Python worker, (de)serialization and related tracebacks. It just makes the exception more difficult to read. For example, one statement of `x/0` above shows a very long traceback and most of them are unnecessary.

This configuration enables the ability to show simplified tracebacks which users will likely be most interested in.

### Does this PR introduce _any_ user-facing change?

By default, no. It adds one configuration that simplifies the exception message. See the example above.

### How was this patch tested?

Manually tested:

```bash
$ pyspark --conf spark.sql.execution.pyspark.udf.simplifiedException.enabled=true
```
```python
from pyspark.sql.functions import udf; spark.sparkContext.setLogLevel("FATAL"); spark.range(10).select(udf(lambda x: x/0)("id")).collect()
```

and unittests were also added.

Closes #30309 from HyukjinKwon/SPARK-33407.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-11-17 14:15:31 +09:00
Thomas Graves acfd846753 [SPARK-33288][SPARK-32661][K8S] Stage level scheduling support for Kubernetes
### What changes were proposed in this pull request?

This adds support for Stage level scheduling to kubernetes. Kubernetes can support dynamic allocation via the shuffle tracking option which means we can support stage level scheduling by getting new executors.
The main changes here are having the k8s cluster manager pass the resource profile id into the executors and then the ExecutorsPodsAllocator has to request executors based on the individual resource profiles.  I tried to keep code changes here to a minimum. I specifically choose to leave the ExecutorPodsSnapshot the way it was and construct the resource profile to pod states on the fly, with a fast path when not using other resource profiles, to keep the impact to a minimum.  This results in the main changes required are just wrapping the allocation logic in a for loop over each profile.  The other main change is in the basic feature step we have to look at the resources in the ResourceProfile to request pods with the correct resources.  Much of the other logic like in the executor life cycle manager doesn't need to be resource profile.

This also adds support for [SPARK-32661]Spark executors on K8S should request extra memory for off-heap allocations because the stage level scheduling api has support for this and it made sense to make consistent with YARN.  This was started with PR https://github.com/apache/spark/pull/29477 but never updated so I just did it here.   To do this I moved a few functions around that were now used by both YARN and kubernetes so you will see some changes in Utils.

### Why are the changes needed?

Add the feature to Kubernetes based on customer feedback.

### Does this PR introduce _any_ user-facing change?

Yes the feature now works with K8s, but not underlying API changes.

### How was this patch tested?

Tested manually on kubernetes cluster and with unit tests.

Closes #30204 from tgravescs/stagek8sOrigSnapshotsRebase.

Lead-authored-by: Thomas Graves <tgraves@apache.org>
Co-authored-by: Thomas Graves <tgraves@nvidia.com>
Signed-off-by: Thomas Graves <tgraves@apache.org>
2020-11-13 16:04:13 -06:00
Kent Yao 4335af075a [MINOR][DOC] spark.executor.memoryOverhead is not cluster-mode only
### What changes were proposed in this pull request?

Remove "in cluster mode" from the description of `spark.executor.memoryOverhead`

### Why are the changes needed?

fix correctness issue in documentaion

### Does this PR introduce _any_ user-facing change?

yes, users may not get confused about the description `spark.executor.memoryOverhead`

### How was this patch tested?

pass GA doc generation

Closes #30311 from yaooqinn/minordoc.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Takeshi Yamamuro <yamamuro@apache.org>
2020-11-12 18:53:06 +09:00
Steve Loughran 318a173fce
[SPARK-33402][CORE] Jobs launched in same second have duplicate MapReduce JobIDs
### What changes were proposed in this pull request?

1. Applies the SQL changes in SPARK-33230 to SparkHadoopWriter, so that `rdd.saveAsNewAPIHadoopDataset` passes in a unique job UUID in `spark.sql.sources.writeJobUUID`
1. `SparkHadoopWriterUtils.createJobTrackerID` generates a JobID by appending a random long number to the supplied timestamp to ensure the probability of a collision is near-zero.
1. With tests of uniqueness, round trips and negative jobID rejection.

### Why are the changes needed?

Without this, if more than one job is started in the same second *and the committer expects application attempt IDs to be unique* is at risk of clashing with other jobs.

With the fix,

* those committers which use the ID set in `spark.sql.sources.writeJobUUID` as a priority ID will pick that up instead and so be unique.
* committers which use the Hadoop JobID for unique paths and filenames will get the randomly generated jobID.  Assuming all clocks in a cluster in sync, the probability of two jobs launched in the same second has dropped from 1 to 1/(2^63)

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Unit tests

There's a new test suite SparkHadoopWriterUtilsSuite which creates jobID, verifies they are unique even for the same timestamp and that they can be marshalled to string and parsed back in the hadoop code, which contains some (brittle) assumptions about the format of job IDs.

Functional Integration Tests

1. Hadoop-trunk built with [HADOOP-17318], publishing to local maven repository
1. Spark built with hadoop.version=3.4.0-SNAPSHOT to pick up these JARs.
1. Spark + Object store integration tests at [https://github.com/hortonworks-spark/cloud-integration](https://github.com/hortonworks-spark/cloud-integration) were built against that local spark version
1. And executed against AWS london.

The tests were run with `fs.s3a.committer.require.uuid=true`, so the s3a committers fail fast if they don't get a job ID down. This showed that `rdd.saveAsNewAPIHadoopDataset` wasn't setting the UUID option. It again uses the current Date value for an app attempt -which is not guaranteed to be unique.

With the change applied to spark, the relevant tests work, therefore the committers are getting unique job IDs.

Closes #30319 from steveloughran/BUG/SPARK-33402-jobuuid.

Authored-by: Steve Loughran <stevel@cloudera.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-11-11 14:27:48 -08:00
Dongjoon Hyun aa0849b46a [SPARK-33387][CORE] Support ordered shuffle block migration
### What changes were proposed in this pull request?

This PR aims to support sorted shuffle block migration.

### Why are the changes needed?

Since the current shuffle block migration works in a random order, the failure during worker decommission affects all shuffles. We had better finish the shuffles one by one to minimize the number of affected shuffle.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the CIs with the newly added test case.

Closes #30293 from dongjoon-hyun/SPARK-33387.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2020-11-08 22:43:27 -08:00
yangjie01 02fd52cfbc [SPARK-33352][CORE][SQL][SS][MLLIB][AVRO][K8S] Fix procedure-like declaration compilation warnings in Scala 2.13
### What changes were proposed in this pull request?
There are two similar compilation warnings about procedure-like declaration in Scala 2.13:

```
[WARNING] [Warn] /spark/core/src/main/scala/org/apache/spark/HeartbeatReceiver.scala:70: procedure syntax is deprecated for constructors: add `=`, as in method definition
```
and

```
[WARNING] [Warn] /spark/core/src/main/scala/org/apache/spark/storage/BlockManagerDecommissioner.scala:211: procedure syntax is deprecated: instead, add `: Unit =` to explicitly declare `run`'s return type
```

this pr is the first part to resolve SPARK-33352:

- For constructors method definition add `=` to convert to function syntax

- For without `return type` methods definition add `: Unit =` to convert to function syntax

### Why are the changes needed?
Eliminate compilation warnings in Scala 2.13 and this change should be compatible with Scala 2.12

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Pass the Jenkins or GitHub Action

Closes #30255 from LuciferYang/SPARK-29392-FOLLOWUP.1.

Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-11-08 12:51:48 -06:00
yangjie01 fb9c873e7d [SPARK-33347][CORE] Cleanup useless variables of MutableApplicationInfo
### What changes were proposed in this pull request?
There are 4 fields in `MutableApplicationInfo ` seems useless:

- `coresGranted`
- `maxCores`
- `coresPerExecutor`
- `memoryPerExecutorMB`

They are always `None` and not reassigned.

So the main change of this pr is  cleanup these useless fields in `MutableApplicationInfo`.

### Why are the changes needed?
Cleanup useless variables.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Pass the Jenkins or GitHub Action

Closes #30251 from LuciferYang/SPARK-33347.

Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: Jungtaek Lim (HeartSaVioR) <kabhwan.opensource@gmail.com>
2020-11-07 06:43:27 +09:00
Warren Zhu 93ad26be01 [SPARK-23432][UI] Add executor peak jvm memory metrics in executors page
### What changes were proposed in this pull request?
Add executor peak jvm memory metrics in executors page

![image](https://user-images.githubusercontent.com/1633312/97767765-9121bf00-1adb-11eb-93c7-7912d9fe7826.png)

### Why are the changes needed?
Users can know executor peak jvm metrics on in executors page

### Does this PR introduce _any_ user-facing change?
Users can know executor peak jvm metrics on in executors page

### How was this patch tested?
Manually tested

Closes #30186 from warrenzhu25/23432.

Authored-by: Warren Zhu <warren.zhu25@gmail.com>
Signed-off-by: Jungtaek Lim (HeartSaVioR) <kabhwan.opensource@gmail.com>
2020-11-06 16:53:10 +09:00
neko f6c0007970 [SPARK-33342][WEBUI] fix the wrong url and display name of blocking thread in threadDump page
### What changes were proposed in this pull request?
fix the wrong url and display name of blocking thread in threadDump page.
The blockingThreadId variable passed to the page should be of string type instead of Option type.

### Why are the changes needed?
blocking threadId in the ui page is not displayed well, and the corresponding  url cannot be redirected normally

### Does this PR introduce _any_ user-facing change?
NO

### How was this patch tested?
The pr  only involves minor changes to the page and does not affect other functions,
The manual test results are as follows. The thread name displayed on the page is correct, and you can click on the URL to jump to the corresponding url

![shows_ok](https://user-images.githubusercontent.com/52202080/98108177-89488d00-1ed6-11eb-9488-8446c3f38bad.gif)

Closes #30249 from akiyamaneko/thread-dump-improve.

Authored-by: neko <echohlne@gmail.com>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
2020-11-06 13:45:02 +08:00
Luca Canali b7fff03973 [SPARK-31711][CORE] Register the executor source with the metrics system when running in local mode
### What changes were proposed in this pull request?
This PR proposes to register the executor source with the Spark metrics system when running in local mode.

### Why are the changes needed?
The Apache Spark metrics system provides many useful insights on the Spark workload.
In particular, the [executor source metrics](https://github.com/apache/spark/blob/master/docs/monitoring.md#component-instance--executor) provide detailed info, including the number of active tasks, I/O metrics, and several task metrics details. The executor source metrics, contrary to other sources (for example ExecutorMetrics source), is not available when running in local mode.
Having executor metrics in local mode can be useful when testing and troubleshooting Spark workloads in a development environment. The metrics can be fed to a dashboard to see the evolution of resource usage and can be used to troubleshoot performance,
as [in this example](https://github.com/cerndb/spark-dashboard).
Currently users will have to deploy on a cluster to be able to collect executor source metrics, while the possibility of having them in local mode is handy for testing.

### Does this PR introduce _any_ user-facing change?
- This PR exposes executor source metrics data when running in local mode.

### How was this patch tested?
- Manually tested by running in local mode and inspecting the metrics listed in http://localhost:4040/metrics/json/
- Also added a test in `SourceConfigSuite`

Closes #28528 from LucaCanali/metricsWithLocalMode.

Authored-by: Luca Canali <luca.canali@cern.ch>
Signed-off-by: Thomas Graves <tgraves@apache.org>
2020-11-04 16:48:55 -06:00
neko 56c623e98c [SPARK-33284][WEB-UI] In the Storage UI page, clicking any field to sort the table will cause the header content to be lost
### What changes were proposed in this pull request?
In the old version of spark in the storage UI page, the sorting function is normal, but sorting in the new version will cause the header content to be lost, So I try to fix the bug.

### Why are the changes needed?

The header field of the table on the page is similar to the following, **note that each th contains the span attribute**:

```html
<thead>
    <tr>
        ....
        <th width="" class="">
              <span data-toggle="tooltip" title="" data-original-title="StorageLevel displays where the persisted RDD is stored, format of the persisted RDD (serialized or de-serialized) andreplication factor of the persisted RDD">
                Storage Level
              </span>
        </th>
       .....
    </tr>
</thead>
```

Since  [PR#26136](https://github.com/apache/spark/pull/26136), if the `th` in the table itself contains the `span` attribute, the `span` will be deleted directly after clicking the sort, and the original header content will be lost.

There are three problems  in `sorttable.js`:

1. `sortrevind.class = "sorttable_sortrevind"` in  [sorttab.js#107](9d5e48ea95/core/src/main/resources/org/apache/spark/ui/static/sorttable.js (L107)) and  `sortfwdind.class = "sorttable_sortfwdind"` in  [sorttab.js#125](9d5e48ea95/core/src/main/resources/org/apache/spark/ui/static/sorttable.js (L125))
sorttable_xx attribute should be assigned to`className` instead of `class`, as javascript uses `rowlists[j].className.search` rather than `rowlists[j].class.search` to determine whether the component has a sorting flag or not.
2.  `rowlists[j].className.search(/\sorttable_sortrevind\b/)` in  [sorttab.js#120](9d5e48ea95/core/src/main/resources/org/apache/spark/ui/static/sorttable.js (L120)) was wrong. The original intention is to search whether `className` contains  the word `sorttable_sortrevind` , but the expression is wrong,  it should be `\bsorttable_sortrevind\b` instead of `\sorttable_sortrevind\b`
3. The if check statement in the following code snippet ([sorttab.js#141](9d5e48ea95/core/src/main/resources/org/apache/spark/ui/static/sorttable.js (L141))) was wrong. **If the `search` function does not find the target, it will return -1, but Boolean(-1) is actually equals true**. This statement will cause span to be deleted even if it does not contain `sorttable_sortfwdind` or `sorttable_sortrevind`.
```javascript
rowlists = this.parentNode.getElementsByTagName("span");
for (var j=0; j < rowlists.length; j++) {
              if (rowlists[j].className.search(/\bsorttable_sortfwdind\b/)
                  || rowlists[j].className.search(/\sorttable_sortrevind\b/) ) {
                  rowlists[j].parentNode.removeChild(rowlists[j]);
              }
          }
```

### Does this PR introduce _any_ user-facing change?
NO.

### How was this patch tested?
The manual test result of the ui page is as below:

![fix sorted](https://user-images.githubusercontent.com/52202080/97543194-daeaa680-1a02-11eb-8b11-8109c3e4e9a3.gif)

Closes #30182 from akiyamaneko/ui_storage_sort_error.

Authored-by: neko <echohlne@gmail.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-11-03 08:49:52 -06:00
Gengliang Wang 2b6dfa5f7b [SPARK-20044][UI] Support Spark UI behind front-end reverse proxy using a path prefix Revert proxy url
### What changes were proposed in this pull request?

Allow to run the Spark web UI behind a reverse proxy with URLs prefixed by a context root, like www.mydomain.com/spark. In particular, this allows to access multiple Spark clusters through the same virtual host, only distinguishing them by context root, like www.mydomain.com/cluster1, www.mydomain.com/cluster2, and it allows to run the Spark UI in a common cookie domain (for SSO) with other services.

### Why are the changes needed?

This PR is to take over https://github.com/apache/spark/pull/17455.
After changes, Spark allows showing customized prefix URL in all the `href` links of the HTML pages.

### Does this PR introduce _any_ user-facing change?

Yes, all the links of UI pages will be contains the value of `spark.ui.reverseProxyUrl` if it is configurated.
### How was this patch tested?

New HTML Unit tests in MasterSuite
Manual UI testing for master, worker and app UI with an nginx proxy
Spark config:
```
spark.ui.port 8080
spark.ui.reverseProxy=true
spark.ui.reverseProxyUrl=/path/to/spark/
```
nginx config:
```
server {
    listen 9000;
    set $SPARK_MASTER http://127.0.0.1:8080;
    # split spark UI path into prefix and local path within master UI
    location ~ ^(/path/to/spark/) {
        # strip prefix when forwarding request
        rewrite /path/to/spark(/.*) $1  break;
        #rewrite /path/to/spark/ "/" ;
        # forward to spark master UI
        proxy_pass $SPARK_MASTER;
        proxy_intercept_errors on;
        error_page 301 302 307 = handle_redirects;
    }
    location handle_redirects {
        set $saved_redirect_location '$upstream_http_location';
        proxy_pass $saved_redirect_location;
    }
}
```

Closes #29820 from gengliangwang/revertProxyURL.

Lead-authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Co-authored-by: Oliver Köth <okoeth@de.ibm.com>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
2020-11-01 23:57:57 +08:00
Thomas Graves 72ad9dcd5d [SPARK-32037][CORE] Rename blacklisting feature
### What changes were proposed in this pull request?

this PR renames the blacklisting feature. I ended up using  "excludeOnFailure" or "excluded" in most cases but there is a mix. I renamed the BlacklistTracker to HealthTracker, but for the TaskSetBlacklist HealthTracker didn't make sense to me since its not the health of the taskset itself but rather tracking the things its excluded on so I renamed it to be TaskSetExcludeList.  Everything else I tried to use the context and in most cases excluded made sense. It made more sense to me then blocked since you are basically excluding those executors and nodes from scheduling tasks on them. Then can be unexcluded later after timeouts and such. The configs I changed the name to use excludeOnFailure which I thought explained it.

I unfortunately couldn't get rid of some of them because its part of the event listener and history files.  To keep backwards compatibility I kept the events and some of the parsing so that the history server would still properly read older history files.  It is not forward compatible though - meaning a new application write the "Excluded" events so the older history server won't properly read display them as being blacklisted.

A few of the files below are showing up as deleted and recreated even though I did a git mv on them. I'm not sure why.

### Why are the changes needed?

get rid of problematic language

### Does this PR introduce _any_ user-facing change?

Config name changes but the old configs still work but are deprecated.

### How was this patch tested?

updated tests and also manually tested the UI changes and manually tested the history server reading older versions of history files and vice versa.

Closes #29906 from tgravescs/SPARK-32037.

Lead-authored-by: Thomas Graves <tgraves@nvidia.com>
Co-authored-by: Thomas Graves <tgraves@apache.org>
Signed-off-by: Thomas Graves <tgraves@apache.org>
2020-10-30 17:16:53 -05:00
Dmitry Sabanin 7c897c1216 [MINOR][CORE][DOCS] Fix typo in "spark.storage.decommission.shuffleBlocks.enabled" description
### What changes were proposed in this pull request?
Small typo fix in the description of `spark.storage.decommission.shuffleBlocks.enabled` property.

Closes #30208 from dsabanin/patch-1.

Authored-by: Dmitry Sabanin <sdmitry@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2020-10-30 11:14:42 -07:00