Commit graph

6415 commits

Author SHA1 Message Date
John Lee adf005dabe [SPARK-21656][CORE] spark dynamic allocation should not idle timeout executors when tasks still to run
## What changes were proposed in this pull request?

Right now spark lets go of executors when they are idle for the 60s (or configurable time). I have seen spark let them go when they are idle but they were really needed. I have seen this issue when the scheduler was waiting to get node locality but that takes longer than the default idle timeout. In these jobs the number of executors goes down really small (less than 10) but there are still like 80,000 tasks to run.
We should consider not allowing executors to idle timeout if they are still needed according to the number of tasks to be run.

## How was this patch tested?

Tested by manually adding executors to `executorsIdsToBeRemoved` list and seeing if those executors were removed when there are a lot of tasks and a high `numExecutorsTarget` value.

Code used

In  `ExecutorAllocationManager.start()`

```
    start_time = clock.getTimeMillis()
```

In `ExecutorAllocationManager.schedule()`
```
    val executorIdsToBeRemoved = ArrayBuffer[String]()
    if ( now > start_time + 1000 * 60 * 2) {
      logInfo("--- REMOVING 1/2 of the EXECUTORS ---")
      start_time +=  1000 * 60 * 100
      var counter = 0
      for (x <- executorIds) {
        counter += 1
        if (counter == 2) {
          counter = 0
          executorIdsToBeRemoved += x
        }
      }
    }

Author: John Lee <jlee2@yahoo-inc.com>

Closes #18874 from yoonlee95/SPARK-21656.
2017-08-16 09:44:09 -05:00
Marcelo Vanzin 3f958a9992 [SPARK-21731][BUILD] Upgrade scalastyle to 0.9.
This version fixes a few issues in the import order checker; it provides
better error messages, and detects more improper ordering (thus the need
to change a lot of files in this patch). The main fix is that it correctly
complains about the order of packages vs. classes.

As part of the above, I moved some "SparkSession" import in ML examples
inside the "$example on$" blocks; that didn't seem consistent across
different source files to start with, and avoids having to add more on/off blocks
around specific imports.

The new scalastyle also seems to have a better header detector, so a few
license headers had to be updated to match the expected indentation.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18943 from vanzin/SPARK-21731.
2017-08-15 13:59:00 -07:00
Marcelo Vanzin cba826d001 [SPARK-17742][CORE] Handle child process exit in SparkLauncher.
Currently the launcher handle does not monitor the child spark-submit
process it launches; this means that if the child exits with an error,
the handle's state will never change, and an application will not know
that the application has failed.

This change adds code to monitor the child process, and changes the
handle state appropriately when the child process exits.

Tested with added unit tests.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18877 from vanzin/SPARK-17742.
2017-08-15 11:26:29 -07:00
Andrew Ash 6847e93cf4 [SPARK-21563][CORE] Fix race condition when serializing TaskDescriptions and adding jars
## What changes were proposed in this pull request?

Fix the race condition when serializing TaskDescriptions and adding jars by keeping the set of jars and files for a TaskSet constant across the lifetime of the TaskSet.  Otherwise TaskDescription serialization can produce an invalid serialization when new file/jars are added concurrently as the TaskDescription is serialized.

## How was this patch tested?

Additional unit test ensures jars/files contained in the TaskDescription remain constant throughout the lifetime of the TaskSet.

Author: Andrew Ash <andrew@andrewash.com>

Closes #18913 from ash211/SPARK-21563.
2017-08-14 22:48:08 +08:00
Anderson Osagie 34d2134a9f [SPARK-21176][WEB UI] Format worker page links to work with proxy
## What changes were proposed in this pull request?

Several links on the worker page do not work correctly with the proxy because:
1) They don't acknowledge the proxy
2) They use relative paths (unlike the Application Page which uses full paths)

This patch fixes that. It also fixes a mistake in the proxy's Location header parsing which caused it to incorrectly handle redirects.

## How was this patch tested?

I checked the validity of every link with the proxy on and off.

Author: Anderson Osagie <osagie@gmail.com>

Closes #18915 from aosagie/fix/proxy-links.
2017-08-14 10:00:59 +01:00
Stavros Kontopoulos da8c59bdea [SPARK-12559][SPARK SUBMIT] fix --packages for stand-alone cluster mode
Fixes --packages flag for the stand-alone case in cluster mode. Adds to the driver classpath the jars that are resolved via ivy along with any other jars passed to `spark.jars`. Jars not resolved by ivy are downloaded explicitly to a tmp folder on the driver node. Similar code is available in SparkSubmit so we refactored part of it to use it at the DriverWrapper class which is responsible for launching driver in standalone cluster mode.

Note: In stand-alone mode `spark.jars` contains the user jar so it can be fetched later on at the executor side.

Manually by submitting a driver in cluster mode within a standalone cluster and checking if dependencies were resolved at the driver side.

Author: Stavros Kontopoulos <st.kontopoulos@gmail.com>

Closes #18630 from skonto/fix_packages_stand_alone_cluster.
2017-08-11 15:52:32 -07:00
Kent Yao 2387f1e316 [SPARK-21675][WEBUI] Add a navigation bar at the bottom of the Details for Stage Page
## What changes were proposed in this pull request?

1. In Spark Web UI, the Details for Stage Page don't have a navigation bar at the bottom. When we drop down to the bottom, it is better for us to see a navi bar right there to go wherever we what.
2. Executor ID is not equivalent to Host, it may be  better to separate them, and then we can group the tasks by Hosts .

## How was this patch tested?
manually test
![wx20170809-165606](https://user-images.githubusercontent.com/8326978/29114161-f82b4920-7d25-11e7-8d0c-0c036b008a78.png)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Kent Yao <yaooqinn@hotmail.com>

Closes #18893 from yaooqinn/SPARK-21675.
2017-08-11 14:57:06 +01:00
peay c06f3f5ac5 [SPARK-21551][PYTHON] Increase timeout for PythonRDD.serveIterator
## What changes were proposed in this pull request?

This modification increases the timeout for `serveIterator` (which is not dynamically configurable). This fixes timeout issues in pyspark when using `collect` and similar functions, in cases where Python may take more than a couple seconds to connect.

See https://issues.apache.org/jira/browse/SPARK-21551

## How was this patch tested?

Ran the tests.

cc rxin

Author: peay <peay@protonmail.com>

Closes #18752 from peay/spark-21551.
2017-08-09 14:03:18 -07:00
Takeshi Yamamuro b78cf13bf0 [SPARK-21276][CORE] Update lz4-java to the latest (v1.4.0)
## What changes were proposed in this pull request?
This pr updated `lz4-java` to the latest (v1.4.0) and removed custom `LZ4BlockInputStream`. We currently use custom `LZ4BlockInputStream` to read concatenated byte stream in shuffle. But, this functionality has been implemented in the latest lz4-java (https://github.com/lz4/lz4-java/pull/105). So, we might update the latest to remove the custom `LZ4BlockInputStream`.

Major diffs between the latest release and v1.3.0 in the master are as follows (62f7547abb...6d4693f562);
- fixed NPE in XXHashFactory similarly
- Don't place resources in default package to support shading
- Fixes ByteBuffer methods failing to apply arrayOffset() for array-backed
- Try to load lz4-java from java.library.path, then fallback to bundled
- Add ppc64le binary
- Add s390x JNI binding
- Add basic LZ4 Frame v1.5.0 support
- enable aarch64 support for lz4-java
- Allow unsafeInstance() for ppc64le archiecture
- Add unsafeInstance support for AArch64
- Support 64-bit JNI build on Solaris
- Avoid over-allocating a buffer
- Allow EndMark to be incompressible for LZ4FrameInputStream.
- Concat byte stream

## How was this patch tested?
Existing tests.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #18883 from maropu/SPARK-21276.
2017-08-09 17:31:52 +02:00
vinodkc 83fe3b5e10 [SPARK-21665][CORE] Need to close resources after use
## What changes were proposed in this pull request?
Resources in Core - SparkSubmitArguments.scala, Spark-launcher - AbstractCommandBuilder.java, resource-managers- YARN - Client.scala are released

## How was this patch tested?
No new test cases added, Unit test have been passed

Author: vinodkc <vinod.kc.in@gmail.com>

Closes #18880 from vinodkc/br_fixresouceleak.
2017-08-09 15:18:38 +02:00
10087686 6426adffaf [SPARK-21663][TESTS] test("remote fetch below max RPC message size") should call masterTracker.stop() in MapOutputTrackerSuite
Signed-off-by: 10087686 <wang.jiaochunzte.com.cn>

## What changes were proposed in this pull request?
After Unit tests end,there should be call masterTracker.stop() to free resource;
(Please fill in changes proposed in this fix)

## How was this patch tested?
Run Unit tests;
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: 10087686 <wang.jiaochun@zte.com.cn>

Closes #18867 from wangjiaochun/mapout.
2017-08-09 18:45:38 +08:00
Anderson Osagie ae8a2b1496 [SPARK-21176][WEB UI] Use a single ProxyServlet to proxy all workers and applications
## What changes were proposed in this pull request?

Currently, each application and each worker creates their own proxy servlet. Each proxy servlet is backed by its own HTTP client and a relatively large number of selector threads. This is excessive but was fixed (to an extent) by https://github.com/apache/spark/pull/18437.

However, a single HTTP client (backed by a single selector thread) should be enough to handle all proxy requests. This PR creates a single proxy servlet no matter how many applications and workers there are.

## How was this patch tested?
.
The unit tests for rewriting proxied locations and headers were updated. I then spun up a 100 node cluster to ensure that proxy'ing worked correctly

jiangxb1987 Please let me know if there's anything else I can do to help push this thru. Thanks!

Author: Anderson Osagie <osagie@gmail.com>

Closes #18499 from aosagie/fix/minimize-proxy-threads.
2017-08-09 14:35:27 +08:00
pgandhi f016f5c8f6 [SPARK-21503][UI] Spark UI shows incorrect task status for a killed Executor Process
The executor tab on Spark UI page shows task as completed when an executor process that is running that task is killed using the kill command.
Added the case ExecutorLostFailure which was previously not there, thus, the default case would be executed in which case, task would be marked as completed. This case will consider all those cases where executor connection to Spark Driver was lost due to killing the executor process, network connection etc.

## How was this patch tested?
Manually Tested the fix by observing the UI change before and after.
Before:
<img width="1398" alt="screen shot-before" src="https://user-images.githubusercontent.com/22228190/28482929-571c9cea-6e30-11e7-93dd-728de5cdea95.png">
After:
<img width="1385" alt="screen shot-after" src="https://user-images.githubusercontent.com/22228190/28482964-8649f5ee-6e30-11e7-91bd-2eb2089c61cc.png">

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: pgandhi <pgandhi@yahoo-inc.com>
Author: pgandhi999 <parthkgandhi9@gmail.com>

Closes #18707 from pgandhi999/master.
2017-08-09 13:46:06 +08:00
Xianyang Liu 534a063f7c [SPARK-21621][CORE] Reset numRecordsWritten after DiskBlockObjectWriter.commitAndGet called
## What changes were proposed in this pull request?

We should reset numRecordsWritten to zero after DiskBlockObjectWriter.commitAndGet called.
Because when `revertPartialWritesAndClose` be called, we decrease the written records in `ShuffleWriteMetrics` . However, we decreased the written records to zero, this should be wrong, we should only decreased the number reords after the last `commitAndGet` called.

## How was this patch tested?
Modified existing test.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Xianyang Liu <xianyang.liu@intel.com>

Closes #18830 from ConeyLiu/DiskBlockObjectWriter.
2017-08-07 17:04:53 +08:00
hzyaoqin 41568e9a0f [SPARK-21637][SPARK-21451][SQL] get spark.hadoop.* properties from sysProps to hiveconf
## What changes were proposed in this pull request?
When we use `bin/spark-sql` command configuring `--conf spark.hadoop.foo=bar`, the `SparkSQLCliDriver` initializes an instance of  hiveconf, it does not add `foo->bar` to it.
this pr gets `spark.hadoop.*` properties from sysProps to this hiveconf

## How was this patch tested?
UT

Author: hzyaoqin <hzyaoqin@corp.netease.com>
Author: Kent Yao <yaooqinn@hotmail.com>

Closes #18668 from yaooqinn/SPARK-21451.
2017-08-05 17:30:47 -07:00
Shixiong Zhu 6cbd18c9d0 [SPARK-21374][CORE] Fix reading globbed paths from S3 into DF with disabled FS cache
## What changes were proposed in this pull request?

This PR replaces #18623 to do some clean up.

Closes #18623

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <shixiong@databricks.com>
Author: Andrey Taptunov <taptunov@amazon.com>

Closes #18848 from zsxwing/review-pr18623.
2017-08-04 22:40:04 -07:00
Dmitry Parfenchik e3967dc5cc [SPARK-21254][WEBUI] History UI performance fixes
## What changes were proposed in this pull request?

As described in JIRA ticket, History page is taking ~1min to load for cases when amount of jobs is 10k+.
Most of the time is currently being spent on DOM manipulations and all additional costs implied by this (browser repaints and reflows).
PR's goal is not to change any behavior but to optimize time of History UI rendering:

1. The most costly operation is setting `innerHTML` for `duration` column within a loop, which is [extremely unperformant](https://jsperf.com/jquery-append-vs-html-list-performance/24). [Refactoring ](114943b21a) this helped to get page load time **down to 10-15s**

2. Second big gain bringing page load time **down to 4s** was [was achieved](f35fdcd5f1) by detaching table's DOM before parsing it with DataTables jQuery plugin.

3. Another chunk of improvements ([1](332b398db7), [2](0af596a547), [3](235f164178)) was focused on removing unnecessary DOM manipulations that in  total contributed ~250ms to page load time.

## How was this patch tested?

Tested by existing Selenium tests in `org.apache.spark.deploy.history.HistoryServerSuite`.

Changes were also tested on Criteo's spark-2.1 fork with 20k+ number of rows in the table, reducing load time to 4s.

Author: Dmitry Parfenchik <d.parfenchik@criteo.com>
Author: Anna Savarin <a.savarin@criteo.com>

Closes #18783 from 2ooom/history-ui-perf-fix-upstream-master.
2017-08-04 08:19:54 +01:00
louis lyu bb7afb4e10 [SPARK-20713][SPARK CORE] Convert CommitDenied to TaskKilled.
## What changes were proposed in this pull request?

In executor, toTaskFailedReason is converted to toTaskCommitDeniedReason to avoid the inconsistency of taskState. In JobProgressListener, add case TaskCommitDenied so that now the stage killed number is been incremented other than failed number.
This pull request is picked up from: https://github.com/apache/spark/pull/18070 using commit: ff93ade0248baf3793ab55659042f9d7b8efbdef
The case match for TaskCommitDenied is added incrementing the correct num of killed after pull/18070.

## How was this patch tested?

Run a normal speculative job and check the Stage UI page, should have no failed displayed.

Author: louis lyu <llyu@c02tk24rg8wl-lm.champ.corp.yahoo.com>

Closes #18819 from nlyu/SPARK-20713.
2017-08-03 13:15:35 -05:00
Marcelo Vanzin 9456176da0 [SPARK-21490][CORE] Make sure SparkLauncher redirects needed streams.
The code was failing to account for some cases when setting up log
redirection. For example, if a user redirected only stdout to a file,
the launcher code would leave stderr without redirection, which could
lead to child processes getting stuck because stderr wasn't being
read.

So detect cases where only one of the streams is redirected, and
redirect the other stream to the log as appropriate.

For the old "launch()" API, redirection of the unconfigured stream
only happens if the user has explicitly requested for log redirection.
Log redirection is on by default with "startApplication()".

Most of the change is actually adding new unit tests to make sure the
different cases work as expected. As part of that, I moved some tests
that were in the core/ module to the launcher/ module instead, since
they don't depend on spark-submit.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18696 from vanzin/SPARK-21490.
2017-08-02 12:05:55 -07:00
Dongjoon Hyun 14e75758ab [SPARK-21578][CORE] Add JavaSparkContextSuite
## What changes were proposed in this pull request?

Due to SI-8479, [SPARK-1093](https://issues.apache.org/jira/browse/SPARK-21578) introduced redundant [SparkContext constructors](https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/SparkContext.scala#L148-L181). However, [SI-8479](https://issues.scala-lang.org/browse/SI-8479) is already fixed in Scala 2.10.5 and Scala 2.11.1.

The real reason to provide this constructor is that Java code can access `SparkContext` directly. It's Scala behavior, SI-4278. So, this PR adds an explicit testsuite, `JavaSparkContextSuite`  to prevent future regression, and fixes the outdate comment, too.

## How was this patch tested?

Pass the Jenkins with a new test suite.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #18778 from dongjoon-hyun/SPARK-21578.
2017-08-01 21:59:02 -07:00
gatorsmile 4cc704b121 [CORE][MINOR] Improve the error message of checkpoint RDD verification
### What changes were proposed in this pull request?
The original error message is pretty confusing. It is unable to tell which number is `number of partitions` and which one is the `RDD ID`. This PR is to improve the checkpoint checking.

### How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #18796 from gatorsmile/improveErrMsgForCheckpoint.
2017-08-01 17:10:46 -07:00
Marcelo Vanzin 6735433cde [SPARK-20079][YARN] Fix client AM not allocating executors after restart.
The main goal of this change is to avoid the situation described
in the bug, where an AM restart in the middle of a job may cause
no new executors to be allocated because of faulty logic in the
reset path.

The change does two things:

- fixes the executor alloc manager's reset() so that it does not
  stop allocation after a reset() in the middle of a job
- re-orders the initialization of the YarnAllocator class so that
  it fetches the current executor ID before triggering the reset()
  above.

This ensures both that the new allocator gets new requests for executors,
and that it starts from the correct executor id.

Tested with unit tests and by manually causing AM restarts while
running jobs using spark-shell in YARN mode.

Closes #17882

Author: Marcelo Vanzin <vanzin@cloudera.com>
Author: Guoqiang Li <witgo@qq.com>

Closes #18663 from vanzin/SPARK-20079.
2017-08-01 10:12:30 -07:00
jerryshao 5fd0294ff8 [SPARK-21475][CORE] Use NIO's Files API to replace FileInputStream/FileOutputStream in some critical paths
## What changes were proposed in this pull request?

Java's `FileInputStream` and `FileOutputStream` overrides finalize(), even this file input/output stream is closed correctly and promptly, it will still leave some memory footprints which will only get cleaned in Full GC. This will introduce two side effects:

1. Lots of memory footprints regarding to Finalizer will be kept in memory and this will increase the memory overhead. In our use case of external shuffle service, a busy shuffle service will have bunch of this object and potentially lead to OOM.
2. The Finalizer will only be called in Full GC, and this will increase the overhead of Full GC and lead to long GC pause.

https://bugs.openjdk.java.net/browse/JDK-8080225

https://www.cloudbees.com/blog/fileinputstream-fileoutputstream-considered-harmful

So to fix this potential issue, here propose to use NIO's Files#newInput/OutputStream instead in some critical paths like shuffle.

Left unchanged FileInputStream in core which I think is not so critical:

```
./core/src/main/scala/org/apache/spark/api/python/PythonRDD.scala:467:    val file = new DataInputStream(new FileInputStream(filename))
./core/src/main/scala/org/apache/spark/api/python/PythonRDD.scala:942:    val in = new FileInputStream(new File(path))
./core/src/main/scala/org/apache/spark/deploy/master/FileSystemPersistenceEngine.scala:76:    val fileIn = new FileInputStream(file)
./core/src/main/scala/org/apache/spark/deploy/RPackageUtils.scala:248:        val fis = new FileInputStream(file)
./core/src/main/scala/org/apache/spark/deploy/SparkSubmit.scala:910:                input = new FileInputStream(new File(t))
./core/src/main/scala/org/apache/spark/metrics/MetricsConfig.scala:20:import java.io.{FileInputStream, InputStream}
./core/src/main/scala/org/apache/spark/metrics/MetricsConfig.scala:132:        case Some(f) => new FileInputStream(f)
./core/src/main/scala/org/apache/spark/scheduler/SchedulableBuilder.scala:20:import java.io.{FileInputStream, InputStream}
./core/src/main/scala/org/apache/spark/scheduler/SchedulableBuilder.scala:77:        val fis = new FileInputStream(f)
./core/src/main/scala/org/apache/spark/shuffle/IndexShuffleBlockResolver.scala:27:import org.apache.spark.io.NioBufferedFileInputStream
./core/src/main/scala/org/apache/spark/shuffle/IndexShuffleBlockResolver.scala:94:      new DataInputStream(new NioBufferedFileInputStream(index))
./core/src/main/scala/org/apache/spark/storage/DiskStore.scala:111:        val channel = new FileInputStream(file).getChannel()
./core/src/main/scala/org/apache/spark/storage/DiskStore.scala:219:    val channel = new FileInputStream(file).getChannel()
./core/src/main/scala/org/apache/spark/TestUtils.scala:20:import java.io.{ByteArrayInputStream, File, FileInputStream, FileOutputStream}
./core/src/main/scala/org/apache/spark/TestUtils.scala:106:      val in = new FileInputStream(file)
./core/src/main/scala/org/apache/spark/util/logging/RollingFileAppender.scala:89:        inputStream = new FileInputStream(activeFile)
./core/src/main/scala/org/apache/spark/util/Utils.scala:329:      if (in.isInstanceOf[FileInputStream] && out.isInstanceOf[FileOutputStream]
./core/src/main/scala/org/apache/spark/util/Utils.scala:332:        val inChannel = in.asInstanceOf[FileInputStream].getChannel()
./core/src/main/scala/org/apache/spark/util/Utils.scala:1533:      gzInputStream = new GZIPInputStream(new FileInputStream(file))
./core/src/main/scala/org/apache/spark/util/Utils.scala:1560:      new GZIPInputStream(new FileInputStream(file))
./core/src/main/scala/org/apache/spark/util/Utils.scala:1562:      new FileInputStream(file)
./core/src/main/scala/org/apache/spark/util/Utils.scala:2090:    val inReader = new InputStreamReader(new FileInputStream(file), StandardCharsets.UTF_8)
```

Left unchanged FileOutputStream in core:

```
./core/src/main/scala/org/apache/spark/api/python/PythonRDD.scala:957:    val out = new FileOutputStream(file)
./core/src/main/scala/org/apache/spark/api/r/RBackend.scala:20:import java.io.{DataOutputStream, File, FileOutputStream, IOException}
./core/src/main/scala/org/apache/spark/api/r/RBackend.scala:131:      val dos = new DataOutputStream(new FileOutputStream(f))
./core/src/main/scala/org/apache/spark/deploy/master/FileSystemPersistenceEngine.scala:62:    val fileOut = new FileOutputStream(file)
./core/src/main/scala/org/apache/spark/deploy/RPackageUtils.scala:160:          val outStream = new FileOutputStream(outPath)
./core/src/main/scala/org/apache/spark/deploy/RPackageUtils.scala:239:    val zipOutputStream = new ZipOutputStream(new FileOutputStream(zipFile, false))
./core/src/main/scala/org/apache/spark/deploy/SparkSubmit.scala:949:        val out = new FileOutputStream(tempFile)
./core/src/main/scala/org/apache/spark/deploy/worker/CommandUtils.scala:20:import java.io.{File, FileOutputStream, InputStream, IOException}
./core/src/main/scala/org/apache/spark/deploy/worker/CommandUtils.scala:106:    val out = new FileOutputStream(file, true)
./core/src/main/scala/org/apache/spark/scheduler/EventLoggingListener.scala:109:     * Therefore, for local files, use FileOutputStream instead. */
./core/src/main/scala/org/apache/spark/scheduler/EventLoggingListener.scala:112:        new FileOutputStream(uri.getPath)
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:20:import java.io.{BufferedOutputStream, File, FileOutputStream, OutputStream}
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:71:  private var fos: FileOutputStream = null
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:102:    fos = new FileOutputStream(file, true)
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:213:      var truncateStream: FileOutputStream = null
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:215:        truncateStream = new FileOutputStream(file, true)
./core/src/main/scala/org/apache/spark/storage/DiskStore.scala:153:    val out = new FileOutputStream(file).getChannel()
./core/src/main/scala/org/apache/spark/TestUtils.scala:20:import java.io.{ByteArrayInputStream, File, FileInputStream, FileOutputStream}
./core/src/main/scala/org/apache/spark/TestUtils.scala:81:    val jarStream = new JarOutputStream(new FileOutputStream(jarFile))
./core/src/main/scala/org/apache/spark/TestUtils.scala:96:    val jarFileStream = new FileOutputStream(jarFile)
./core/src/main/scala/org/apache/spark/util/logging/FileAppender.scala:20:import java.io.{File, FileOutputStream, InputStream, IOException}
./core/src/main/scala/org/apache/spark/util/logging/FileAppender.scala:31:  volatile private var outputStream: FileOutputStream = null
./core/src/main/scala/org/apache/spark/util/logging/FileAppender.scala:97:    outputStream = new FileOutputStream(file, true)
./core/src/main/scala/org/apache/spark/util/logging/RollingFileAppender.scala:90:        gzOutputStream = new GZIPOutputStream(new FileOutputStream(gzFile))
./core/src/main/scala/org/apache/spark/util/Utils.scala:329:      if (in.isInstanceOf[FileInputStream] && out.isInstanceOf[FileOutputStream]
./core/src/main/scala/org/apache/spark/util/Utils.scala:333:        val outChannel = out.asInstanceOf[FileOutputStream].getChannel()
./core/src/main/scala/org/apache/spark/util/Utils.scala:527:      val out = new FileOutputStream(tempFile)
```

Here in `DiskBlockObjectWriter`, it uses `FileDescriptor` so it is not easy to change to NIO Files API.

For the `FileInputStream` and `FileOutputStream` in common/shuffle* I changed them all.

## How was this patch tested?

Existing tests and manual verification.

Author: jerryshao <sshao@hortonworks.com>

Closes #18684 from jerryshao/SPARK-21475.
2017-08-01 10:23:45 +01:00
iurii.ant 106eaa9b95 [SPARK-21575][SPARKR] Eliminate needless synchronization in java-R serialization
## What changes were proposed in this pull request?
Remove surplus synchronized blocks.

## How was this patch tested?
Unit tests run OK.

Author: iurii.ant <sereneant@gmail.com>

Closes #18775 from SereneAnt/eliminate_unnecessary_synchronization_in_java-R_serialization.
2017-07-31 10:42:09 +08:00
Zhan Zhang 44e501ace3 [SPARK-19839][CORE] release longArray in BytesToBytesMap
## What changes were proposed in this pull request?
When BytesToBytesMap spills, its longArray should be released. Otherwise, it may not released until the task complete. This array may take a significant amount of memory, which cannot be used by later operator, such as UnsafeShuffleExternalSorter, resulting in more frequent spill in sorter. This patch release the array as destructive iterator will not use this array anymore.

## How was this patch tested?
Manual test in production

Author: Zhan Zhang <zhanzhang@fb.com>

Closes #17180 from zhzhan/memory.
2017-07-30 18:50:19 -07:00
Johan Grande 0ef9fe64e2 Typo in comment
-

Author: Johan Grande <nahoj@crans.org>

Closes #18738 from nahoj/patch-1.
2017-07-28 16:51:18 +01:00
davidxdh 784680903c [SPARK-21553][SPARK SHELL] Add the description of the default value of master parameter in the spark-shell
When I type spark-shell --help, I find that the default value description for the master parameter is missing. The user does not know what the default value is when the master parameter is not included, so we need to add the master parameter default description to the help information.
[https://issues.apache.org/jira/browse/SPARK-21553](https://issues.apache.org/jira/browse/SPARK-21553)

Author: davidxdh <xu.donghui@zte.com.cn>
Author: Donghui Xu <xu.donghui@zte.com.cn>

Closes #18755 from davidxdh/dev_0728.
2017-07-28 15:21:45 +01:00
Sean Owen 63d168cbb8 [MINOR][BUILD] Fix current lint-java failures
## What changes were proposed in this pull request?

Fixes current failures in dev/lint-java

## How was this patch tested?

Existing linter, tests.

Author: Sean Owen <sowen@cloudera.com>

Closes #18757 from srowen/LintJava.
2017-07-28 11:31:40 +01:00
Wenchen Fan 9f5647d62e [SPARK-21319][SQL] Fix memory leak in sorter
## What changes were proposed in this pull request?

`UnsafeExternalSorter.recordComparator` can be either `KVComparator` or `RowComparator`, and both of them will keep the reference to the input rows they compared last time.

After sorting, we return the sorted iterator to upstream operators. However, the upstream operators may take a while to consume up the sorted iterator, and `UnsafeExternalSorter` is registered to `TaskContext` at [here](https://github.com/apache/spark/blob/v2.2.0/core/src/main/java/org/apache/spark/util/collection/unsafe/sort/UnsafeExternalSorter.java#L159-L161), which means we will keep the `UnsafeExternalSorter` instance and keep the last compared input rows in memory until the sorted iterator is consumed up.

Things get worse if we sort within partitions of a dataset and coalesce all partitions into one, as we will keep a lot of input rows in memory and the time to consume up all the sorted iterators is long.

This PR takes over https://github.com/apache/spark/pull/18543 , the idea is that, we do not keep the record comparator instance in `UnsafeExternalSorter`, but a generator of record comparator.

close #18543

## How was this patch tested?

N/A

Author: Wenchen Fan <wenchen@databricks.com>

Closes #18679 from cloud-fan/memory-leak.
2017-07-27 22:56:26 +08:00
zhoukang 16612638f0 [SPARK-21517][CORE] Avoid copying memory when transfer chunks remotely
## What changes were proposed in this pull request?

In our production cluster,oom happens when NettyBlockRpcServer receive OpenBlocks message.The reason we observed is below:
When BlockManagerManagedBuffer call ChunkedByteBuffer#toNetty, it will use Unpooled.wrappedBuffer(ByteBuffer... buffers) which use default maxNumComponents=16 in low-level CompositeByteBuf.When our component's number is bigger than 16, it will execute consolidateIfNeeded

        int numComponents = this.components.size();
        if(numComponents > this.maxNumComponents) {
            int capacity = ((CompositeByteBuf.Component)this.components.get(numComponents - 1)).endOffset;
            ByteBuf consolidated = this.allocBuffer(capacity);

            for(int c = 0; c < numComponents; ++c) {
                CompositeByteBuf.Component c1 = (CompositeByteBuf.Component)this.components.get(c);
                ByteBuf b = c1.buf;
                consolidated.writeBytes(b);
                c1.freeIfNecessary();
            }

            CompositeByteBuf.Component var7 = new CompositeByteBuf.Component(consolidated);
            var7.endOffset = var7.length;
            this.components.clear();
            this.components.add(var7);
        }

in CompositeByteBuf which will consume some memory during buffer copy.
We can use another api Unpooled. wrappedBuffer(int maxNumComponents, ByteBuffer... buffers) to avoid this comsuming.

## How was this patch tested?

Test in production cluster.

Author: zhoukang <zhoukang@xiaomi.com>

Closes #18723 from caneGuy/zhoukang/fix-chunkbuffer.
2017-07-25 17:59:21 -07:00
Eric Vandenberg 06a9793793 [SPARK-21447][WEB UI] Spark history server fails to render compressed
inprogress history file in some cases.

Add failure handling for EOFException that can be thrown during
decompression of an inprogress spark history file, treat same as case
where can't parse the last line.

## What changes were proposed in this pull request?

Failure handling for case of EOFException thrown within the ReplayListenerBus.replay method to handle the case analogous to json parse fail case.  This path can arise in compressed inprogress history files since an incomplete compression block could be read (not flushed by writer on a block boundary).  See the stack trace of this occurrence in the jira ticket (https://issues.apache.org/jira/browse/SPARK-21447)

## How was this patch tested?

Added a unit test that specifically targets validating the failure handling path appropriately when maybeTruncated is true and false.

Author: Eric Vandenberg <ericvandenberg@fb.com>

Closes #18673 from ericvandenbergfb/fix_inprogress_compr_history_file.
2017-07-25 11:45:35 -07:00
Marcelo Vanzin cecd285a2a [SPARK-20904][CORE] Don't report task failures to driver during shutdown.
Executors run a thread pool with daemon threads to run tasks. This means
that those threads remain active when the JVM is shutting down, meaning
those tasks are affected by code that runs in shutdown hooks.

So if a shutdown hook messes with something that the task is using (e.g.
an HDFS connection), the task will fail and will report that failure to
the driver. That will make the driver mark the task as failed regardless
of what caused the executor to shut down. So, for example, if YARN pre-empted
that executor, the driver would consider that task failed when it should
instead ignore the failure.

This change avoids reporting failures to the driver when shutdown hooks
are executing; this fixes the YARN preemption accounting, and doesn't really
change things much for other scenarios, other than reporting a more generic
error ("Executor lost") when the executor shuts down unexpectedly - which
is arguably more correct.

Tested with a hacky app running on spark-shell that tried to cause failures
only when shutdown hooks were running, verified that preemption didn't cause
the app to fail because of task failures exceeding the threshold.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18594 from vanzin/SPARK-20904.
2017-07-23 23:23:13 +08:00
Wenchen Fan 3ac6093086 [SPARK-10063] Follow-up: remove dead code related to an old output committer
## What changes were proposed in this pull request?

DirectParquetOutputCommitter was removed from Spark as it was deemed unsafe to use. We however still have some code to generate warning. This patch removes those code as well.

This is kind of a follow-up of https://github.com/apache/spark/pull/16796

## How was this patch tested?

existing tests

Author: Wenchen Fan <wenchen@databricks.com>

Closes #18689 from cloud-fan/minor.
2017-07-20 12:08:20 -07:00
Oleg Danilov da9f067a1e [SPARK-19531] Send UPDATE_LENGTH for Spark History service
## What changes were proposed in this pull request?

During writing to the .inprogress file (stored on the HDFS) Hadoop doesn't update file length until close and therefor Spark's history server can't detect any changes. We have to send UPDATE_LENGTH manually.

Author: Oleg Danilov <oleg.danilov@wandisco.com>

Closes #16924 from dosoft/SPARK-19531.
2017-07-20 09:38:49 -07:00
Xiang Gao b7a40f64e6 [SPARK-16542][SQL][PYSPARK] Fix bugs about types that result an array of null when creating DataFrame using python
## What changes were proposed in this pull request?
This is the reopen of https://github.com/apache/spark/pull/14198, with merge conflicts resolved.

ueshin Could you please take a look at my code?

Fix bugs about types that result an array of null when creating DataFrame using python.

Python's array.array have richer type than python itself, e.g. we can have `array('f',[1,2,3])` and `array('d',[1,2,3])`. Codes in spark-sql and pyspark didn't take this into consideration which might cause a problem that you get an array of null values when you have `array('f')` in your rows.

A simple code to reproduce this bug is:

```
from pyspark import SparkContext
from pyspark.sql import SQLContext,Row,DataFrame
from array import array

sc = SparkContext()
sqlContext = SQLContext(sc)

row1 = Row(floatarray=array('f',[1,2,3]), doublearray=array('d',[1,2,3]))
rows = sc.parallelize([ row1 ])
df = sqlContext.createDataFrame(rows)
df.show()
```

which have output

```
+---------------+------------------+
|    doublearray|        floatarray|
+---------------+------------------+
|[1.0, 2.0, 3.0]|[null, null, null]|
+---------------+------------------+
```

## How was this patch tested?

New test case added

Author: Xiang Gao <qasdfgtyuiop@gmail.com>
Author: Gao, Xiang <qasdfgtyuiop@gmail.com>
Author: Takuya UESHIN <ueshin@databricks.com>

Closes #18444 from zasdfgbnm/fix_array_infer.
2017-07-20 12:46:06 +09:00
Dhruve Ashar ef61775586 [SPARK-21243][Core] Limit no. of map outputs in a shuffle fetch
## What changes were proposed in this pull request?
For configurations with external shuffle enabled, we have observed that if a very large no. of blocks are being fetched from a remote host, it puts the NM under extra pressure and can crash it. This change introduces a configuration `spark.reducer.maxBlocksInFlightPerAddress` , to limit the no. of map outputs being fetched from a given remote address. The changes applied here are applicable for both the scenarios - when external shuffle is enabled as well as disabled.

## How was this patch tested?
Ran the job with the default configuration which does not change the existing behavior and ran it with few configurations of lower values -10,20,50,100. The job ran fine and there is no change in the output. (I will update the metrics related to NM in some time.)

Author: Dhruve Ashar <dhruveashar@gmail.com>

Closes #18487 from dhruve/impr/SPARK-21243.
2017-07-19 15:53:28 -05:00
Peng 46307b2cd3 [SPARK-21401][ML][MLLIB] add poll function for BoundedPriorityQueue
## What changes were proposed in this pull request?
The most of BoundedPriorityQueue usages in ML/MLLIB are:
Get the value of BoundedPriorityQueue, then sort it.
For example, in Word2Vec: pq.toSeq.sortBy(-_._2)
in ALS, pq.toArray.sorted()

The test results show using pq.poll is much faster than sort the value.
It is good to add the poll function for BoundedPriorityQueue.

## How was this patch tested?
The existing UT

Author: Peng <peng.meng@intel.com>
Author: Peng Meng <peng.meng@intel.com>

Closes #18620 from mpjlu/add-poll.
2017-07-19 09:56:48 +01:00
Marcelo Vanzin 264b0f36ce [SPARK-21408][CORE] Better default number of RPC dispatch threads.
Instead of using the host's cpu count, use the number of cores allocated
for the Spark process when sizing the RPC dispatch thread pool. This avoids
creating large thread pools on large machines when the number of allocated
cores is small.

Tested by verifying number of threads with spark.executor.cores set
to 1 and 4; same thing for YARN AM.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18639 from vanzin/SPARK-21408.
2017-07-18 13:36:10 -07:00
jerryshao cde64add18 [SPARK-21411][YARN] Lazily create FS within kerberized UGI to avoid token acquiring failure
## What changes were proposed in this pull request?

In the current `YARNHadoopDelegationTokenManager`, `FileSystem` to which to get tokens are created out of KDC logged UGI, using these `FileSystem` to get new tokens will lead to exception. The main thing is that Spark code trying to get new tokens from the FS created with token auth-ed UGI, but Hadoop can only grant new tokens in kerberized UGI. To fix this issue, we should lazily create these FileSystem within KDC logged UGI.

## How was this patch tested?

Manual verification in secure cluster.

CC vanzin mgummelt please help to review, thanks!

Author: jerryshao <sshao@hortonworks.com>

Closes #18633 from jerryshao/SPARK-21411.
2017-07-18 11:44:01 -07:00
Sean Owen d3f4a21196 [SPARK-15526][ML][FOLLOWUP] Make JPMML provided scope to avoid including unshaded JARs, and repromote to compile in MLlib
Following the comment at https://issues.apache.org/jira/browse/SPARK-15526?focusedCommentId=16086106&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-16086106 -- this change actually needed a little more work to be complete.

This also marks JPMML as `provided` to make sure its JARs aren't included in the `jars` output, but then scopes to `compile` in `mllib`. This is how Guava is handled.

Checked result in `assembly/target/scala-2.11/jars` to verify there are no JPMML jars. Maven and SBT builds still work.

Author: Sean Owen <sowen@cloudera.com>

Closes #18637 from srowen/SPARK-15526.2.
2017-07-18 09:53:51 -07:00
Sean Owen e26dac5feb [SPARK-21415] Triage scapegoat warnings, part 1
## What changes were proposed in this pull request?

Address scapegoat warnings for:
- BigDecimal double constructor
- Catching NPE
- Finalizer without super
- List.size is O(n)
- Prefer Seq.empty
- Prefer Set.empty
- reverse.map instead of reverseMap
- Type shadowing
- Unnecessary if condition.
- Use .log1p
- Var could be val

In some instances like Seq.empty, I avoided making the change even where valid in test code to keep the scope of the change smaller. Those issues are concerned with performance and it won't matter for tests.

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #18635 from srowen/Scapegoat1.
2017-07-18 08:47:17 +01:00
Josh Rosen 5952ad2b40 [SPARK-21444] Be more defensive when removing broadcasts in MapOutputTracker
## What changes were proposed in this pull request?

In SPARK-21444, sitalkedia reported an issue where the `Broadcast.destroy()` call in `MapOutputTracker`'s `ShuffleStatus.invalidateSerializedMapOutputStatusCache()` was failing with an `IOException`, causing the DAGScheduler to crash and bring down the entire driver.

This is a bug introduced by #17955. In the old code, we removed a broadcast variable by calling `BroadcastManager.unbroadcast` with `blocking=false`, but the new code simply calls `Broadcast.destroy()` which is capable of failing with an IOException in case certain blocking RPCs time out.

The fix implemented here is to replace this with a call to `destroy(blocking = false)` and to wrap the entire operation in `Utils.tryLogNonFatalError`.

## How was this patch tested?

I haven't written regression tests for this because it's really hard to inject mocks to simulate RPC failures here. Instead, this class of issue is probably best uncovered with more generalized error injection / network unreliability / fuzz testing tools.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #18662 from JoshRosen/SPARK-21444.
2017-07-17 20:40:32 -07:00
Zhang A Peng 7aac755ba0 [SPARK-21410][CORE] Create less partitions for RangePartitioner if RDD.count() is less than partitions
## What changes were proposed in this pull request?

Fix a bug in RangePartitioner:
In RangePartitioner(partitions: Int, rdd: RDD[]), RangePartitioner.numPartitions is wrong if the number of elements in RDD (rdd.count()) is less than number of partitions (partitions in constructor).

## How was this patch tested?

test as described in [SPARK-SPARK-21410](https://issues.apache.org/jira/browse/SPARK-21410
)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Zhang A Peng <zhangap@cn.ibm.com>

Closes #18631 from apapi/fixRangePartitioner.numPartitions.
2017-07-18 09:57:53 +08:00
John Lee 0e07a29cf4 [SPARK-21321][SPARK CORE] Spark very verbose on shutdown
## What changes were proposed in this pull request?

The current code is very verbose on shutdown.

The changes I propose is to change the log level when the driver is shutting down and the RPC connections are closed (RpcEnvStoppedException).

## How was this patch tested?

Tested with word count(deploy-mode = cluster, master = yarn, num-executors = 4) with 300GB of data.

Author: John Lee <jlee2@yahoo-inc.com>

Closes #18547 from yoonlee95/SPARK-21321.
2017-07-17 13:13:35 -05:00
Kazuaki Ishizaki ac5d5d7959 [SPARK-21344][SQL] BinaryType comparison does signed byte array comparison
## What changes were proposed in this pull request?

This PR fixes a wrong comparison for `BinaryType`. This PR enables unsigned comparison and unsigned prefix generation for an array for `BinaryType`. Previous implementations uses signed operations.

## How was this patch tested?

Added a test suite in `OrderingSuite`.

Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>

Closes #18571 from kiszk/SPARK-21344.
2017-07-14 20:16:04 -07:00
Stavros Kontopoulos d8257b99dd [SPARK-21403][MESOS] fix --packages for mesos
## What changes were proposed in this pull request?
Fixes --packages flag for mesos in cluster mode. Probably I will handle standalone and Yarn in another commit, I need to investigate those cases as they are different.

## How was this patch tested?
Tested with a community 1.9 dc/os cluster. packages were successfully resolved in cluster mode within a container.

andrewor14  susanxhuynh ArtRand srowen  pls review.

Author: Stavros Kontopoulos <st.kontopoulos@gmail.com>

Closes #18587 from skonto/fix_packages_mesos_cluster.
2017-07-13 10:37:15 -07:00
Sean Owen 425c4ada4c [SPARK-19810][BUILD][CORE] Remove support for Scala 2.10
## What changes were proposed in this pull request?

- Remove Scala 2.10 build profiles and support
- Replace some 2.10 support in scripts with commented placeholders for 2.12 later
- Remove deprecated API calls from 2.10 support
- Remove usages of deprecated context bounds where possible
- Remove Scala 2.10 workarounds like ScalaReflectionLock
- Other minor Scala warning fixes

## How was this patch tested?

Existing tests

Author: Sean Owen <sowen@cloudera.com>

Closes #17150 from srowen/SPARK-19810.
2017-07-13 17:06:24 +08:00
Devaraj K e16e8c7ad3 [SPARK-21146][CORE] Master/Worker should handle and shutdown when any thread gets UncaughtException
## What changes were proposed in this pull request?

Adding the default UncaughtExceptionHandler to the Worker.

## How was this patch tested?

I verified it manually, when any of the worker thread gets uncaught exceptions then the default UncaughtExceptionHandler will handle those exceptions.

Author: Devaraj K <devaraj@apache.org>

Closes #18357 from devaraj-kavali/SPARK-21146.
2017-07-12 00:14:58 -07:00
jinxing 97a1aa2c70 [SPARK-21315][SQL] Skip some spill files when generateIterator(startIndex) in ExternalAppendOnlyUnsafeRowArray.
## What changes were proposed in this pull request?

In current code, it is expensive to use `UnboundedFollowingWindowFunctionFrame`, because it is iterating from the start to lower bound every time calling `write` method. When traverse the iterator, it's possible to skip some spilled files thus to save some time.

## How was this patch tested?

Added unit test

Did a small test for benchmark:

Put 2000200 rows into `UnsafeExternalSorter`-- 2 spill files(each contains 1000000 rows) and inMemSorter contains 200 rows.
Move the iterator forward to index=2000001.

*With this change*:
`getIterator(2000001)`, it will cost almost 0ms~1ms;
*Without this change*:
`for(int i=0; i<2000001; i++)geIterator().loadNext()`, it will cost 300ms.

Author: jinxing <jinxing6042@126.com>

Closes #18541 from jinxing64/SPARK-21315.
2017-07-11 11:47:47 +08:00
jinxing 6a06c4b03c [SPARK-21342] Fix DownloadCallback to work well with RetryingBlockFetcher.
## What changes were proposed in this pull request?

When `RetryingBlockFetcher` retries fetching blocks. There could be two `DownloadCallback`s download the same content to the same target file. It could cause `ShuffleBlockFetcherIterator` reading a partial result.

This pr proposes to create and delete the tmp files in `OneForOneBlockFetcher`

Author: jinxing <jinxing6042@126.com>
Author: Shixiong Zhu <zsxwing@gmail.com>

Closes #18565 from jinxing64/SPARK-21342.
2017-07-10 21:06:58 +08:00
Eric Vandenberg 96d58f285b [SPARK-21219][CORE] Task retry occurs on same executor due to race condition with blacklisting
## What changes were proposed in this pull request?

There's a race condition in the current TaskSetManager where a failed task is added for retry (addPendingTask), and can asynchronously be assigned to an executor *prior* to the blacklist state (updateBlacklistForFailedTask), the result is the task might re-execute on the same executor.  This is particularly problematic if the executor is shutting down since the retry task immediately becomes a lost task (ExecutorLostFailure).  Another side effect is that the actual failure reason gets obscured by the retry task which never actually executed.  There are sample logs showing the issue in the https://issues.apache.org/jira/browse/SPARK-21219

The fix is to change the ordering of the addPendingTask and updatingBlackListForFailedTask calls in TaskSetManager.handleFailedTask

## How was this patch tested?

Implemented a unit test that verifies the task is black listed before it is added to the pending task.  Ran the unit test without the fix and it fails.  Ran the unit test with the fix and it passes.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Eric Vandenberg <ericvandenberg@fb.com>

Closes #18427 from ericvandenbergfb/blacklistFix.
2017-07-10 14:40:20 +08:00
jinxing 062c336d06 [SPARK-21343] Refine the document for spark.reducer.maxReqSizeShuffleToMem.
## What changes were proposed in this pull request?

In current code, reducer can break the old shuffle service when `spark.reducer.maxReqSizeShuffleToMem` is enabled. Let's refine document.

Author: jinxing <jinxing6042@126.com>

Closes #18566 from jinxing64/SPARK-21343.
2017-07-09 00:27:58 +08:00
Marcelo Vanzin 9131bdb7e1 [SPARK-20342][CORE] Update task accumulators before sending task end event.
This makes sures that listeners get updated task information; otherwise it's
possible to write incomplete task information into event logs, for example,
making the information in a replayed UI inconsistent with the original
application.

Added a new unit test to try to detect the problem, but it's not guaranteed
to fail since it's a race; but it fails pretty reliably for me without the
scheduler changes.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18393 from vanzin/SPARK-20342.try2.
2017-07-09 00:24:54 +08:00
Marcelo Vanzin 9760c15acb [SPARK-20379][CORE] Allow SSL config to reference env variables.
This change exposes the internal code path in SparkConf that allows
configs to be read with variable substitution applied, and uses that
new method in SSLOptions so that SSL configs can reference other
variables, and more importantly, environment variables, providing
a secure way to provide passwords to Spark when using SSL.

The approach is a little bit hacky, but is the smallest change possible.
Otherwise, the concept of "namespaced configs" would have to be added
to the config system, which would create a lot of noise for not much
gain at this point.

Tested with added unit tests, and on a real cluster with SSL enabled.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18394 from vanzin/SPARK-20379.try2.
2017-07-08 14:20:09 +08:00
CodingCat fbbe37ed41 [SPARK-19358][CORE] LiveListenerBus shall log the event name when dropping them due to a fully filled queue
## What changes were proposed in this pull request?

Some dropped event will make the whole application behaves unexpectedly, e.g. some UI problem...we shall log the dropped event name to facilitate the debugging

## How was this patch tested?

Existing tests

Author: CodingCat <zhunansjtu@gmail.com>

Closes #16697 from CodingCat/SPARK-19358.
2017-07-07 20:10:24 +08:00
Takuya UESHIN 53c2eb59b2 [SPARK-21327][SQL][PYSPARK] ArrayConstructor should handle an array of typecode 'l' as long rather than int in Python 2.
## What changes were proposed in this pull request?

Currently `ArrayConstructor` handles an array of typecode `'l'` as `int` when converting Python object in Python 2 into Java object, so if the value is larger than `Integer.MAX_VALUE` or smaller than `Integer.MIN_VALUE` then the overflow occurs.

```python
import array
data = [Row(longarray=array.array('l', [-9223372036854775808, 0, 9223372036854775807]))]
df = spark.createDataFrame(data)
df.show(truncate=False)
```

```
+----------+
|longarray |
+----------+
|[0, 0, -1]|
+----------+
```

This should be:

```
+----------------------------------------------+
|longarray                                     |
+----------------------------------------------+
|[-9223372036854775808, 0, 9223372036854775807]|
+----------------------------------------------+
```

## How was this patch tested?

Added a test and existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #18553 from ueshin/issues/SPARK-21327.
2017-07-07 14:05:22 +09:00
caoxuewen 565e7a8d4a [SPARK-20950][CORE] add a new config to diskWriteBufferSize which is hard coded before
## What changes were proposed in this pull request?

This PR Improvement in two:
1.With spark.shuffle.spill.diskWriteBufferSize configure diskWriteBufferSize of ShuffleExternalSorter.
    when change the size of the diskWriteBufferSize to test `forceSorterToSpill`
    The average performance of running 10 times is as follows:(their unit is MS).
```
diskWriteBufferSize:       1M    512K    256K    128K    64K    32K    16K    8K    4K
---------------------------------------------------------------------------------------
RecordSize = 2.5M          742   722     694     686     667    668    671    669   683
RecordSize = 1M            294   293     292     287     283    285    281    279   285
```

2.Remove outputBufferSizeInBytes and inputBufferSizeInBytes to initialize in mergeSpillsWithFileStream function.

## How was this patch tested?
The unit test.

Author: caoxuewen <cao.xuewen@zte.com.cn>

Closes #18174 from heary-cao/buffersize.
2017-07-06 19:49:34 +08:00
Liang-Chi Hsieh 6ff05a66fe [SPARK-20703][SQL] Associate metrics with data writes onto DataFrameWriter operations
## What changes were proposed in this pull request?

Right now in the UI, after SPARK-20213, we can show the operations to write data out. However, there is no way to associate metrics with data writes. We should show relative metrics on the operations.

#### Supported commands

This change supports updating metrics for file-based data writing operations, including `InsertIntoHadoopFsRelationCommand`, `InsertIntoHiveTable`.

Supported metrics:

* number of written files
* number of dynamic partitions
* total bytes of written data
* total number of output rows
* average writing data out time (ms)
* (TODO) min/med/max number of output rows per file/partition
* (TODO) min/med/max bytes of written data per file/partition

####  Commands not supported

`InsertIntoDataSourceCommand`, `SaveIntoDataSourceCommand`:

The two commands uses DataSource APIs to write data out, i.e., the logic of writing data out is delegated to the DataSource implementations, such as  `InsertableRelation.insert` and `CreatableRelationProvider.createRelation`. So we can't obtain metrics from delegated methods for now.

`CreateHiveTableAsSelectCommand`, `CreateDataSourceTableAsSelectCommand` :

The two commands invokes other commands to write data out. The invoked commands can even write to non file-based data source. We leave them as future TODO.

#### How to update metrics of writing files out

A `RunnableCommand` which wants to update metrics, needs to override its `metrics` and provide the metrics data structure to `ExecutedCommandExec`.

The metrics are prepared during the execution of `FileFormatWriter`. The callback function passed to `FileFormatWriter` will accept the metrics and update accordingly.

There is a metrics updating function in `RunnableCommand`. In runtime, the function will be bound to the spark context and `metrics` of `ExecutedCommandExec` and pass to `FileFormatWriter`.

## How was this patch tested?

Updated unit tests.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #18159 from viirya/SPARK-20703-2.
2017-07-06 15:47:09 +08:00
jerryshao 5800144a54 [SPARK-21012][SUBMIT] Add glob support for resources adding to Spark
Current "--jars (spark.jars)", "--files (spark.files)", "--py-files (spark.submit.pyFiles)" and "--archives (spark.yarn.dist.archives)" only support non-glob path. This is OK for most of the cases, but when user requires to add more jars, files into Spark, it is too verbose to list one by one. So here propose to add glob path support for resources.

Also improving the code of downloading resources.

## How was this patch tested?

UT added, also verified manually in local cluster.

Author: jerryshao <sshao@hortonworks.com>

Closes #18235 from jerryshao/SPARK-21012.
2017-07-06 15:32:49 +08:00
Shixiong Zhu ab866f1173 [SPARK-21248][SS] The clean up codes in StreamExecution should not be interrupted
## What changes were proposed in this pull request?

This PR uses `runUninterruptibly` to avoid that the clean up codes in StreamExecution is interrupted. It also removes an optimization in `runUninterruptibly` to make sure this method never throw `InterruptedException`.

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #18461 from zsxwing/SPARK-21248.
2017-07-05 18:26:28 -07:00
Dongjoon Hyun c8d0aba198 [SPARK-21278][PYSPARK] Upgrade to Py4J 0.10.6
## What changes were proposed in this pull request?

This PR aims to bump Py4J in order to fix the following float/double bug.
Py4J 0.10.5 fixes this (https://github.com/bartdag/py4j/issues/272) and the latest Py4J is 0.10.6.

**BEFORE**
```
>>> df = spark.range(1)
>>> df.select(df['id'] + 17.133574204226083).show()
+--------------------+
|(id + 17.1335742042)|
+--------------------+
|       17.1335742042|
+--------------------+
```

**AFTER**
```
>>> df = spark.range(1)
>>> df.select(df['id'] + 17.133574204226083).show()
+-------------------------+
|(id + 17.133574204226083)|
+-------------------------+
|       17.133574204226083|
+-------------------------+
```

## How was this patch tested?

Manual.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #18546 from dongjoon-hyun/SPARK-21278.
2017-07-05 16:33:23 -07:00
he.qiao e3e2b5da36 [SPARK-21286][TEST] Modified StorageTabSuite unit test
## What changes were proposed in this pull request?
The old unit test not effect

## How was this patch tested?
unit test

Author: he.qiao <he.qiao17@zte.com.cn>

Closes #18511 from Geek-He/dev_0703.
2017-07-05 21:13:25 +08:00
hyukjinkwon 2b1e94b9ad [MINOR][SPARK SUBMIT] Print out R file usage in spark-submit
## What changes were proposed in this pull request?

Currently, running the shell below:

```bash
$ ./bin/spark-submit tmp.R a b c
```

with R file, `tmp.R` as below:

```r
#!/usr/bin/env Rscript

library(SparkR)
sparkRSQL.init(sparkR.init(master = "local"))
collect(createDataFrame(list(list(1))))
print(commandArgs(trailingOnly = TRUE))
```

working fine as below:

```bash
  _1
1  1
[1] "a" "b" "c"
```

However, it looks not printed in usage documentation as below:

```bash
$ ./bin/spark-submit
```

```
Usage: spark-submit [options] <app jar | python file> [app arguments]
...
```

For `./bin/sparkR`, it looks fine as below:

```bash
$ ./bin/sparkR tmp.R
```

```
Running R applications through 'sparkR' is not supported as of Spark 2.0.
Use ./bin/spark-submit <R file>
```

Running the script below:

```bash
$ ./bin/spark-submit
```

**Before**

```
Usage: spark-submit [options] <app jar | python file> [app arguments]
...
```

**After**

```
Usage: spark-submit [options] <app jar | python file | R file> [app arguments]
...
```

## How was this patch tested?

Manually tested.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #18505 from HyukjinKwon/minor-doc-summit.
2017-07-04 12:18:42 +01:00
liuxian 6657e00de3 [SPARK-21283][CORE] FileOutputStream should be created as append mode
## What changes were proposed in this pull request?

`FileAppender` is used to write `stderr` and `stdout` files  in `ExecutorRunner`, But before writing `ErrorStream` into the the `stderr` file, the header information has been written into ,if  FileOutputStream is  not created as append mode, the  header information will be lost

## How was this patch tested?
unit test case

Author: liuxian <liu.xian3@zte.com.cn>

Closes #18507 from 10110346/wip-lx-0703.
2017-07-04 09:16:40 +08:00
Sean Owen a9339db99f [SPARK-21137][CORE] Spark reads many small files slowly
## What changes were proposed in this pull request?

Parallelize FileInputFormat.listStatus in Hadoop API via LIST_STATUS_NUM_THREADS to speed up examination of file sizes for wholeTextFiles et al

## How was this patch tested?

Existing tests, which will exercise the key path here: using a local file system.

Author: Sean Owen <sowen@cloudera.com>

Closes #18441 from srowen/SPARK-21137.
2017-07-03 19:52:39 +08:00
guoxiaolong d913db16a0 [SPARK-21250][WEB-UI] Add a url in the table of 'Running Executors' in worker page to visit job page.
## What changes were proposed in this pull request?

Add a url in the table of 'Running Executors' in worker page to visit job page.

When I click URL of 'Name', the current page jumps to the job page. Of course this is only in the table of 'Running Executors'.

This URL of 'Name' is in the table of 'Finished Executors' does not exist, the click will not jump to any page.

fix before:
![1](https://user-images.githubusercontent.com/26266482/27679397-30ddc262-5ceb-11e7-839b-0889d1f42480.png)

fix after:
![2](https://user-images.githubusercontent.com/26266482/27679405-3588ef12-5ceb-11e7-9756-0a93815cd698.png)

## How was this patch tested?
manual tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: guoxiaolong <guo.xiaolong1@zte.com.cn>

Closes #18464 from guoxiaolongzte/SPARK-21250.
2017-07-03 13:31:01 +08:00
Devaraj K 6beca9ce94 [SPARK-21170][CORE] Utils.tryWithSafeFinallyAndFailureCallbacks throws IllegalArgumentException: Self-suppression not permitted
## What changes were proposed in this pull request?

Not adding the exception to the suppressed if it is the same instance as originalThrowable.

## How was this patch tested?

Added new tests to verify this, these tests fail without source code changes and passes with the change.

Author: Devaraj K <devaraj@apache.org>

Closes #18384 from devaraj-kavali/SPARK-21170.
2017-07-01 15:53:49 +01:00
Liang-Chi Hsieh fd13255225 [SPARK-21052][SQL][FOLLOW-UP] Add hash map metrics to join
## What changes were proposed in this pull request?

Remove `numHashCollisions` in `BytesToBytesMap`. And change `getAverageProbesPerLookup()` to `getAverageProbesPerLookup` as suggested.

## How was this patch tested?

Existing tests.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #18480 from viirya/SPARK-21052-followup.
2017-06-30 15:11:27 -07:00
曾林西 1fe08d62f0 [SPARK-21223] Change fileToAppInfo in FsHistoryProvider to fix concurrent issue.
# What issue does this PR address ?
Jira:https://issues.apache.org/jira/browse/SPARK-21223
fix the Thread-safety issue in FsHistoryProvider
Currently, Spark HistoryServer use a HashMap named fileToAppInfo in class FsHistoryProvider to store the map of eventlog path and attemptInfo.
When use ThreadPool to Replay the log files in the list and merge the list of old applications with new ones, multi thread may update fileToAppInfo at the same time, which may cause Thread-safety issues, such as  falling into an infinite loop because of calling resize func of the hashtable.

Author: 曾林西 <zenglinxi@meituan.com>

Closes #18430 from zenglinxi0615/master.
2017-06-30 19:28:43 +01:00
Xingbo Jiang 3c2fc19d47 [SPARK-18294][CORE] Implement commit protocol to support mapred package's committer
## What changes were proposed in this pull request?

This PR makes the following changes:

- Implement a new commit protocol `HadoopMapRedCommitProtocol` which support the old `mapred` package's committer;
- Refactor SparkHadoopWriter and SparkHadoopMapReduceWriter, now they are combined together, thus we can support write through both mapred and mapreduce API by the new SparkHadoopWriter, a lot of duplicated codes are removed.

After this change, it should be pretty easy for us to support the committer from both the new and the old hadoop API at high level.

## How was this patch tested?
No major behavior change, passed the existing test cases.

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #18438 from jiangxb1987/SparkHadoopWriter.
2017-06-30 20:30:26 +08:00
IngoSchuster 88a536babf [SPARK-21176][WEB UI] Limit number of selector threads for admin ui proxy servlets to 8
## What changes were proposed in this pull request?
Please see also https://issues.apache.org/jira/browse/SPARK-21176

This change limits the number of selector threads that jetty creates to maximum 8 per proxy servlet (Jetty default is number of processors / 2).
The newHttpClient for Jettys ProxyServlet class is overwritten to avoid the Jetty defaults (which are designed for high-performance http servers).
Once https://github.com/eclipse/jetty.project/issues/1643 is available, the code could be cleaned up to avoid the method override.

I really need this on v2.1.1 - what is the best way for a backport automatic merge works fine)? Shall I create another PR?

## How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
The patch was tested manually on a Spark cluster with a head node that has 88 processors using JMX to verify that the number of selector threads is now limited to 8 per proxy.

gurvindersingh zsxwing can you please review the change?

Author: IngoSchuster <ingo.schuster@de.ibm.com>
Author: Ingo Schuster <ingo.schuster@de.ibm.com>

Closes #18437 from IngoSchuster/master.
2017-06-30 11:16:09 +08:00
Shixiong Zhu 80f7ac3a60 [SPARK-21253][CORE] Disable spark.reducer.maxReqSizeShuffleToMem
## What changes were proposed in this pull request?

Disable spark.reducer.maxReqSizeShuffleToMem because it breaks the old shuffle service.

Credits to wangyum

Closes #18466

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <shixiong@databricks.com>
Author: Yuming Wang <wgyumg@gmail.com>

Closes #18467 from zsxwing/SPARK-21253.
2017-06-30 11:02:22 +08:00
Feng Liu f9151bebca [SPARK-21188][CORE] releaseAllLocksForTask should synchronize the whole method
## What changes were proposed in this pull request?

Since the objects `readLocksByTask`, `writeLocksByTask` and `info`s are coupled and supposed to be modified by other threads concurrently, all the read and writes of them in the method `releaseAllLocksForTask` should be protected by a single synchronized block like other similar methods.

## How was this patch tested?

existing tests

Author: Feng Liu <fengliu@databricks.com>

Closes #18400 from liufengdb/synchronize.
2017-06-29 16:03:15 -07:00
杨治国10192065 29bd251dd5 [SPARK-21225][CORE] Considering CPUS_PER_TASK when allocating task slots for each WorkerOffer
JIRA Issue:https://issues.apache.org/jira/browse/SPARK-21225
    In the function "resourceOffers", It declare a variable "tasks" for storage the tasks which have allocated a executor. It declared like this:
`val tasks = shuffledOffers.map(o => new ArrayBuffer[TaskDescription](o.cores))`
    But, I think this code only conside a situation for that one task per core. If the user set "spark.task.cpus" as 2 or 3, It really don't need so much Mem. I think It can motify as follow:
val tasks = shuffledOffers.map(o => new ArrayBuffer[TaskDescription](o.cores / CPUS_PER_TASK))
 to instead.
    Motify like this the other earning is that it's more easy to understand the way how the tasks allocate offers.

Author: 杨治国10192065 <yang.zhiguo@zte.com.cn>

Closes #18435 from JackYangzg/motifyTaskCoreDisp.
2017-06-29 20:53:48 +08:00
fjh100456 d7da2b94d6 [SPARK-21135][WEB UI] On history server page,duration of incompleted applications should be hidden instead of showing up as 0
## What changes were proposed in this pull request?

Hide duration of incompleted applications.

## How was this patch tested?

manual tests

Author: fjh100456 <fu.jinhua6@zte.com.cn>

Closes #18351 from fjh100456/master.
2017-06-29 10:01:12 +01:00
jinxing d106a74c53 [SPARK-21240] Fix code style for constructing and stopping a SparkContext in UT.
## What changes were proposed in this pull request?

Same with SPARK-20985.
Fix code style for constructing and stopping a `SparkContext`. Assure the context is stopped to avoid other tests complain that there's only one `SparkContext` can exist.

Author: jinxing <jinxing6042@126.com>

Closes #18454 from jinxing64/SPARK-21240.
2017-06-29 09:59:36 +01:00
Sital Kedia a946be35ac [SPARK-3577] Report Spill size on disk for UnsafeExternalSorter
## What changes were proposed in this pull request?

Report Spill size on disk for UnsafeExternalSorter

## How was this patch tested?

Tested by running a job on cluster and verify the spill size on disk.

Author: Sital Kedia <skedia@fb.com>

Closes #17471 from sitalkedia/fix_disk_spill_size.
2017-06-29 14:25:51 +08:00
Eric Vandenberg 2d686a19e3 [SPARK-21155][WEBUI] Add (? running tasks) into Spark UI progress
## What changes were proposed in this pull request?

Add metric on number of running tasks to status bar on Jobs / Active Jobs.

## How was this patch tested?

Run a long running (1 minute) query in spark-shell and use localhost:4040 web UI to observe progress.  See jira for screen snapshot.

Author: Eric Vandenberg <ericvandenberg@fb.com>

Closes #18369 from ericvandenbergfb/runningTasks.
2017-06-28 09:26:33 +08:00
jerryshao 9e50a1d37a [SPARK-13669][SPARK-20898][CORE] Improve the blacklist mechanism to handle external shuffle service unavailable situation
## What changes were proposed in this pull request?

Currently we are running into an issue with Yarn work preserving enabled + external shuffle service.
In the work preserving enabled scenario, the failure of NM will not lead to the exit of executors, so executors can still accept and run the tasks. The problem here is when NM is failed, external shuffle service is actually inaccessible, so reduce tasks will always complain about the “Fetch failure”, and the failure of reduce stage will make the parent stage (map stage) rerun. The tricky thing here is Spark scheduler is not aware of the unavailability of external shuffle service, and will reschedule the map tasks on the executor where NM is failed, and again reduce stage will be failed with “Fetch failure”, and after 4 retries, the job is failed. This could also apply to other cluster manager with external shuffle service.

So here the main problem is that we should avoid assigning tasks to those bad executors (where shuffle service is unavailable). Current Spark's blacklist mechanism could blacklist executors/nodes by failure tasks, but it doesn't handle this specific fetch failure scenario. So here propose to improve the current application blacklist mechanism to handle fetch failure issue (especially with external shuffle service unavailable issue), to blacklist the executors/nodes where shuffle fetch is unavailable.

## How was this patch tested?

Unit test and small cluster verification.

Author: jerryshao <sshao@hortonworks.com>

Closes #17113 from jerryshao/SPARK-13669.
2017-06-26 11:14:03 -05:00
Marcelo Vanzin bfd73a7c48 [SPARK-21159][CORE] Don't try to connect to launcher in standalone cluster mode.
Monitoring for standalone cluster mode is not implemented (see SPARK-11033), but
the same scheduler implementation is used, and if it tries to connect to the
launcher it will fail. So fix the scheduler so it only tries that in client mode;
cluster mode applications will be correctly launched and will work, but monitoring
through the launcher handle will not be available.

Tested by running a cluster mode app with "SparkLauncher.startApplication".

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18397 from vanzin/SPARK-21159.
2017-06-24 13:23:43 +08:00
10129659 acd208ee50 [SPARK-21115][CORE] If the cores left is less than the coresPerExecutor,the cores left will not be allocated, so it should not to check in every schedule
## What changes were proposed in this pull request?
If we start an app with the param --total-executor-cores=4 and spark.executor.cores=3, the cores left is always 1, so it will try to allocate executors in the function org.apache.spark.deploy.master.startExecutorsOnWorkers in every schedule.
Another question is, is it will be better to allocate another executor with 1 core for the cores left.

## How was this patch tested?
unit test

Author: 10129659 <chen.yanshan@zte.com.cn>

Closes #18322 from eatoncys/leftcores.
2017-06-23 20:53:26 +08:00
Thomas Graves 5b5a69bea9 [SPARK-20923] turn tracking of TaskMetrics._updatedBlockStatuses off
## What changes were proposed in this pull request?
Turn tracking of TaskMetrics._updatedBlockStatuses off by default. As far as I can see its not used by anything and it uses a lot of memory when caching and processing a lot of blocks.  In my case it was taking 5GB of a 10GB heap and I even went up to 50GB heap and the job still ran out of memory.  With this change in place the same job easily runs in less then 10GB of heap.

We leave the api there as well as a config to turn it back on just in case anyone is using it.  TaskMetrics is exposed via SparkListenerTaskEnd so if users are relying on it they can turn it back on.

## How was this patch tested?

Ran unit tests that were modified and manually tested on a couple of jobs (with and without caching).  Clicked through the UI and didn't see anything missing.
Ran my very large hive query job with 200,000 small tasks, 1000 executors, cached 6+TB of data this runs fine now whereas without this change it would go into full gcs and eventually die.

Author: Thomas Graves <tgraves@thirteenroutine.corp.gq1.yahoo.com>
Author: Tom Graves <tgraves@yahoo-inc.com>

Closes #18162 from tgravescs/SPARK-20923.
2017-06-23 09:19:02 +08:00
jinxing 58434acdd8 [SPARK-19937] Collect metrics for remote bytes read to disk during shuffle.
In current code(https://github.com/apache/spark/pull/16989), big blocks are shuffled to disk.
This pr proposes to collect metrics for remote bytes fetched to disk.

Author: jinxing <jinxing6042@126.com>

Closes #18249 from jinxing64/SPARK-19937.
2017-06-22 14:10:51 -07:00
Xingbo Jiang 2dadea95c8 [SPARK-20832][CORE] Standalone master should explicitly inform drivers of worker deaths and invalidate external shuffle service outputs
## What changes were proposed in this pull request?

In standalone mode, master should explicitly inform each active driver of any worker deaths, so the invalid external shuffle service outputs on the lost host would be removed from the shuffle mapStatus, thus we can avoid future `FetchFailure`s.

## How was this patch tested?
Manually tested by the following steps:
1. Start a standalone Spark cluster with one driver node and two worker nodes;
2. Run a Job with ShuffleMapStage, ensure the outputs distribute on each worker;
3. Run another Job to make all executors exit, but the workers are all alive;
4. Kill one of the workers;
5. Run rdd.collect(), before this change, we should see `FetchFailure`s and failed Stages, while after the change, the job should complete without failure.

Before the change:
![image](https://user-images.githubusercontent.com/4784782/27335366-c251c3d6-55fe-11e7-99dd-d1fdcb429210.png)

After the change:
![image](https://user-images.githubusercontent.com/4784782/27335393-d1c71640-55fe-11e7-89ed-bd760f1f39af.png)

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #18362 from jiangxb1987/removeWorker.
2017-06-22 20:48:12 +08:00
sjarvie ba78514da7 [SPARK-21125][PYTHON] Extend setJobDescription to PySpark and JavaSpark APIs
## What changes were proposed in this pull request?

Extend setJobDescription to PySpark and JavaSpark APIs

SPARK-21125

## How was this patch tested?

Testing was done by running a local Spark shell on the built UI. I originally had added a unit test but the PySpark context cannot easily access the Scala Spark Context's private variable with the Job Description key so I omitted the test, due to the simplicity of this addition.

Also ran the existing tests.

# Misc

This contribution is my original work and that I license the work to the project under the project's open source license.

Author: sjarvie <sjarvie@uber.com>

Closes #18332 from sjarvie/add_python_set_job_description.
2017-06-21 10:51:45 -07:00
Li Yichao d107b3b910 [SPARK-20640][CORE] Make rpc timeout and retry for shuffle registration configurable.
## What changes were proposed in this pull request?

Currently the shuffle service registration timeout and retry has been hardcoded. This works well for small workloads but under heavy workload when the shuffle service is busy transferring large amount of data we see significant delay in responding to the registration request, as a result we often see the executors fail to register with the shuffle service, eventually failing the job. We need to make these two parameters configurable.

## How was this patch tested?

* Updated `BlockManagerSuite` to test registration timeout and max attempts configuration actually works.

cc sitalkedia

Author: Li Yichao <lyc@zhihu.com>

Closes #18092 from liyichao/SPARK-20640.
2017-06-21 21:54:29 +08:00
Xingbo Jiang ef1622899f [SPARK-20989][CORE] Fail to start multiple workers on one host if external shuffle service is enabled in standalone mode
## What changes were proposed in this pull request?

In standalone mode, if we enable external shuffle service by setting `spark.shuffle.service.enabled` to true, and then we try to start multiple workers on one host(by setting `SPARK_WORKER_INSTANCES=3` in spark-env.sh, and then run `sbin/start-slaves.sh`), we can only launch one worker on each host successfully and the rest of the workers fail to launch.
The reason is the port of external shuffle service if configed by `spark.shuffle.service.port`, so currently we could start no more than one external shuffle service on each host. In our case, each worker tries to start a external shuffle service, and only one of them succeeded doing this.

We should give explicit reason of failure instead of fail silently.

## How was this patch tested?
Manually test by the following steps:
1. SET `SPARK_WORKER_INSTANCES=1` in `conf/spark-env.sh`;
2. SET `spark.shuffle.service.enabled` to `true` in `conf/spark-defaults.conf`;
3. Run `sbin/start-all.sh`.

Before the change, you will see no error in the command line, as the following:
```
starting org.apache.spark.deploy.master.Master, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.master.Master-1-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-1-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-2-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-3-xxx.local.out
```
And you can see in the webUI that only one worker is running.

After the change, you get explicit error messages in the command line:
```
starting org.apache.spark.deploy.master.Master, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.master.Master-1-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-1-xxx.local.out
localhost: failed to launch: nice -n 0 /Users/xxx/workspace/spark/bin/spark-class org.apache.spark.deploy.worker.Worker --webui-port 8081 spark://xxx.local:7077
localhost:   17/06/13 23:24:53 INFO SecurityManager: Changing view acls to: xxx
localhost:   17/06/13 23:24:53 INFO SecurityManager: Changing modify acls to: xxx
localhost:   17/06/13 23:24:53 INFO SecurityManager: Changing view acls groups to:
localhost:   17/06/13 23:24:53 INFO SecurityManager: Changing modify acls groups to:
localhost:   17/06/13 23:24:53 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users  with view permissions: Set(xxx); groups with view permissions: Set(); users  with modify permissions: Set(xxx); groups with modify permissions: Set()
localhost:   17/06/13 23:24:54 INFO Utils: Successfully started service 'sparkWorker' on port 63354.
localhost:   Exception in thread "main" java.lang.IllegalArgumentException: requirement failed: Start multiple worker on one host failed because we may launch no more than one external shuffle service on each host, please set spark.shuffle.service.enabled to false or set SPARK_WORKER_INSTANCES to 1 to resolve the conflict.
localhost:   	at scala.Predef$.require(Predef.scala:224)
localhost:   	at org.apache.spark.deploy.worker.Worker$.main(Worker.scala:752)
localhost:   	at org.apache.spark.deploy.worker.Worker.main(Worker.scala)
localhost: full log in /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-1-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-2-xxx.local.out
localhost: failed to launch: nice -n 0 /Users/xxx/workspace/spark/bin/spark-class org.apache.spark.deploy.worker.Worker --webui-port 8082 spark://xxx.local:7077
localhost:   17/06/13 23:24:56 INFO SecurityManager: Changing view acls to: xxx
localhost:   17/06/13 23:24:56 INFO SecurityManager: Changing modify acls to: xxx
localhost:   17/06/13 23:24:56 INFO SecurityManager: Changing view acls groups to:
localhost:   17/06/13 23:24:56 INFO SecurityManager: Changing modify acls groups to:
localhost:   17/06/13 23:24:56 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users  with view permissions: Set(xxx); groups with view permissions: Set(); users  with modify permissions: Set(xxx); groups with modify permissions: Set()
localhost:   17/06/13 23:24:56 INFO Utils: Successfully started service 'sparkWorker' on port 63359.
localhost:   Exception in thread "main" java.lang.IllegalArgumentException: requirement failed: Start multiple worker on one host failed because we may launch no more than one external shuffle service on each host, please set spark.shuffle.service.enabled to false or set SPARK_WORKER_INSTANCES to 1 to resolve the conflict.
localhost:   	at scala.Predef$.require(Predef.scala:224)
localhost:   	at org.apache.spark.deploy.worker.Worker$.main(Worker.scala:752)
localhost:   	at org.apache.spark.deploy.worker.Worker.main(Worker.scala)
localhost: full log in /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-2-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-3-xxx.local.out
localhost: failed to launch: nice -n 0 /Users/xxx/workspace/spark/bin/spark-class org.apache.spark.deploy.worker.Worker --webui-port 8083 spark://xxx.local:7077
localhost:   17/06/13 23:24:59 INFO SecurityManager: Changing view acls to: xxx
localhost:   17/06/13 23:24:59 INFO SecurityManager: Changing modify acls to: xxx
localhost:   17/06/13 23:24:59 INFO SecurityManager: Changing view acls groups to:
localhost:   17/06/13 23:24:59 INFO SecurityManager: Changing modify acls groups to:
localhost:   17/06/13 23:24:59 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users  with view permissions: Set(xxx); groups with view permissions: Set(); users  with modify permissions: Set(xxx); groups with modify permissions: Set()
localhost:   17/06/13 23:24:59 INFO Utils: Successfully started service 'sparkWorker' on port 63360.
localhost:   Exception in thread "main" java.lang.IllegalArgumentException: requirement failed: Start multiple worker on one host failed because we may launch no more than one external shuffle service on each host, please set spark.shuffle.service.enabled to false or set SPARK_WORKER_INSTANCES to 1 to resolve the conflict.
localhost:   	at scala.Predef$.require(Predef.scala:224)
localhost:   	at org.apache.spark.deploy.worker.Worker$.main(Worker.scala:752)
localhost:   	at org.apache.spark.deploy.worker.Worker.main(Worker.scala)
localhost: full log in /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-3-xxx.local.out
```

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #18290 from jiangxb1987/start-slave.
2017-06-20 17:17:21 +08:00
Yuming Wang 9b57cd8d5c [SPARK-21133][CORE] Fix HighlyCompressedMapStatus#writeExternal throws NPE
## What changes were proposed in this pull request?

Fix HighlyCompressedMapStatus#writeExternal NPE:
```
17/06/18 15:00:27 ERROR Utils: Exception encountered
java.lang.NullPointerException
        at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply$mcV$sp(MapStatus.scala:171)
        at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
        at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
        at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1303)
        at org.apache.spark.scheduler.HighlyCompressedMapStatus.writeExternal(MapStatus.scala:167)
        at java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java:1459)
        at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1430)
        at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
        at java.io.ObjectOutputStream.writeArray(ObjectOutputStream.java:1378)
        at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1174)
        at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
        at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply$mcV$sp(MapOutputTracker.scala:617)
        at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
        at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
        at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1337)
        at org.apache.spark.MapOutputTracker$.serializeMapStatuses(MapOutputTracker.scala:619)
        at org.apache.spark.MapOutputTrackerMaster.getSerializedMapOutputStatuses(MapOutputTracker.scala:562)
        at org.apache.spark.MapOutputTrackerMaster$MessageLoop.run(MapOutputTracker.scala:351)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:745)
17/06/18 15:00:27 ERROR MapOutputTrackerMaster: java.lang.NullPointerException
java.io.IOException: java.lang.NullPointerException
        at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1310)
        at org.apache.spark.scheduler.HighlyCompressedMapStatus.writeExternal(MapStatus.scala:167)
        at java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java:1459)
        at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1430)
        at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
        at java.io.ObjectOutputStream.writeArray(ObjectOutputStream.java:1378)
        at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1174)
        at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
        at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply$mcV$sp(MapOutputTracker.scala:617)
        at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
        at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
        at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1337)
        at org.apache.spark.MapOutputTracker$.serializeMapStatuses(MapOutputTracker.scala:619)
        at org.apache.spark.MapOutputTrackerMaster.getSerializedMapOutputStatuses(MapOutputTracker.scala:562)
        at org.apache.spark.MapOutputTrackerMaster$MessageLoop.run(MapOutputTracker.scala:351)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NullPointerException
        at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply$mcV$sp(MapStatus.scala:171)
        at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
        at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
        at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1303)
        ... 17 more
17/06/18 15:00:27 INFO MapOutputTrackerMasterEndpoint: Asked to send map output locations for shuffle 0 to 10.17.47.20:50188
17/06/18 15:00:27 ERROR Utils: Exception encountered
java.lang.NullPointerException
        at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply$mcV$sp(MapStatus.scala:171)
        at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
        at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
        at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1303)
        at org.apache.spark.scheduler.HighlyCompressedMapStatus.writeExternal(MapStatus.scala:167)
        at java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java:1459)
        at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1430)
        at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
        at java.io.ObjectOutputStream.writeArray(ObjectOutputStream.java:1378)
        at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1174)
        at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
        at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply$mcV$sp(MapOutputTracker.scala:617)
        at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
        at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
        at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1337)
        at org.apache.spark.MapOutputTracker$.serializeMapStatuses(MapOutputTracker.scala:619)
        at org.apache.spark.MapOutputTrackerMaster.getSerializedMapOutputStatuses(MapOutputTracker.scala:562)
        at org.apache.spark.MapOutputTrackerMaster$MessageLoop.run(MapOutputTracker.scala:351)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:745)
```

## How was this patch tested?

manual tests

Author: Yuming Wang <wgyumg@gmail.com>

Closes #18343 from wangyum/SPARK-21133.
2017-06-20 09:22:30 +08:00
Marcelo Vanzin 581565dd87 [SPARK-21124][UI] Show correct application user in UI.
The jobs page currently shows the application user, but it assumes
the OS user is the same as the user running the application, which
may not be true in all scenarios (e.g., kerberos). While it might be
useful to show both in the UI, this change just chooses the application
user over the OS user, since the latter can be found in the environment
page if needed.

Tested in live application and in history server.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #18331 from vanzin/SPARK-21124.
2017-06-19 14:41:58 -07:00
Dongjoon Hyun ecc5631351 [MINOR][BUILD] Fix Java linter errors
## What changes were proposed in this pull request?

This PR cleans up a few Java linter errors for Apache Spark 2.2 release.

## How was this patch tested?

```bash
$ dev/lint-java
Using `mvn` from path: /usr/local/bin/mvn
Checkstyle checks passed.
```

We can check the result at Travis CI, [here](https://travis-ci.org/dongjoon-hyun/spark/builds/244297894).

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #18345 from dongjoon-hyun/fix_lint_java_2.
2017-06-19 20:17:54 +01:00
Xingbo Jiang ea542d29b2 [SPARK-19824][CORE] Update JsonProtocol to keep consistent with the UI
## What changes were proposed in this pull request?

Fix any inconsistent part in JsonProtocol with the UI.
This PR also contains the modifications in #17181

## How was this patch tested?

Updated JsonProtocolSuite.

Before this change, localhost:8080/json shows:
```
{
  "url" : "spark://xingbos-MBP.local:7077",
  "workers" : [ {
    "id" : "worker-20170615172946-192.168.0.101-49450",
    "host" : "192.168.0.101",
    "port" : 49450,
    "webuiaddress" : "http://192.168.0.101:8081",
    "cores" : 8,
    "coresused" : 8,
    "coresfree" : 0,
    "memory" : 15360,
    "memoryused" : 1024,
    "memoryfree" : 14336,
    "state" : "ALIVE",
    "lastheartbeat" : 1497519481722
  }, {
    "id" : "worker-20170615172948-192.168.0.101-49452",
    "host" : "192.168.0.101",
    "port" : 49452,
    "webuiaddress" : "http://192.168.0.101:8082",
    "cores" : 8,
    "coresused" : 8,
    "coresfree" : 0,
    "memory" : 15360,
    "memoryused" : 1024,
    "memoryfree" : 14336,
    "state" : "ALIVE",
    "lastheartbeat" : 1497519484160
  }, {
    "id" : "worker-20170615172951-192.168.0.101-49469",
    "host" : "192.168.0.101",
    "port" : 49469,
    "webuiaddress" : "http://192.168.0.101:8083",
    "cores" : 8,
    "coresused" : 8,
    "coresfree" : 0,
    "memory" : 15360,
    "memoryused" : 1024,
    "memoryfree" : 14336,
    "state" : "ALIVE",
    "lastheartbeat" : 1497519486905
  } ],
  "cores" : 24,
  "coresused" : 24,
  "memory" : 46080,
  "memoryused" : 3072,
  "activeapps" : [ {
    "starttime" : 1497519426990,
    "id" : "app-20170615173706-0001",
    "name" : "Spark shell",
    "user" : "xingbojiang",
    "memoryperslave" : 1024,
    "submitdate" : "Thu Jun 15 17:37:06 CST 2017",
    "state" : "RUNNING",
    "duration" : 65362
  } ],
  "completedapps" : [ {
    "starttime" : 1497519250893,
    "id" : "app-20170615173410-0000",
    "name" : "Spark shell",
    "user" : "xingbojiang",
    "memoryperslave" : 1024,
    "submitdate" : "Thu Jun 15 17:34:10 CST 2017",
    "state" : "FINISHED",
    "duration" : 116895
  } ],
  "activedrivers" : [ ],
  "status" : "ALIVE"
}
```

After the change:
```
{
  "url" : "spark://xingbos-MBP.local:7077",
  "workers" : [ {
    "id" : "worker-20170615175032-192.168.0.101-49951",
    "host" : "192.168.0.101",
    "port" : 49951,
    "webuiaddress" : "http://192.168.0.101:8081",
    "cores" : 8,
    "coresused" : 8,
    "coresfree" : 0,
    "memory" : 15360,
    "memoryused" : 1024,
    "memoryfree" : 14336,
    "state" : "ALIVE",
    "lastheartbeat" : 1497520292900
  }, {
    "id" : "worker-20170615175034-192.168.0.101-49953",
    "host" : "192.168.0.101",
    "port" : 49953,
    "webuiaddress" : "http://192.168.0.101:8082",
    "cores" : 8,
    "coresused" : 8,
    "coresfree" : 0,
    "memory" : 15360,
    "memoryused" : 1024,
    "memoryfree" : 14336,
    "state" : "ALIVE",
    "lastheartbeat" : 1497520280301
  }, {
    "id" : "worker-20170615175037-192.168.0.101-49955",
    "host" : "192.168.0.101",
    "port" : 49955,
    "webuiaddress" : "http://192.168.0.101:8083",
    "cores" : 8,
    "coresused" : 8,
    "coresfree" : 0,
    "memory" : 15360,
    "memoryused" : 1024,
    "memoryfree" : 14336,
    "state" : "ALIVE",
    "lastheartbeat" : 1497520282884
  } ],
  "aliveworkers" : 3,
  "cores" : 24,
  "coresused" : 24,
  "memory" : 46080,
  "memoryused" : 3072,
  "activeapps" : [ {
    "id" : "app-20170615175122-0001",
    "starttime" : 1497520282115,
    "name" : "Spark shell",
    "cores" : 24,
    "user" : "xingbojiang",
    "memoryperslave" : 1024,
    "submitdate" : "Thu Jun 15 17:51:22 CST 2017",
    "state" : "RUNNING",
    "duration" : 10805
  } ],
  "completedapps" : [ {
    "id" : "app-20170615175058-0000",
    "starttime" : 1497520258766,
    "name" : "Spark shell",
    "cores" : 24,
    "user" : "xingbojiang",
    "memoryperslave" : 1024,
    "submitdate" : "Thu Jun 15 17:50:58 CST 2017",
    "state" : "FINISHED",
    "duration" : 9876
  } ],
  "activedrivers" : [ ],
  "completeddrivers" : [ ],
  "status" : "ALIVE"
}
```

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #18303 from jiangxb1987/json-protocol.
2017-06-18 22:05:06 -07:00
liuxian 112bd9bfc5 [SPARK-21090][CORE] Optimize the unified memory manager code
## What changes were proposed in this pull request?
1.In `acquireStorageMemory`, when the Memory Mode is OFF_HEAP ,the `maxOffHeapMemory` should be modified to `maxOffHeapStorageMemory`. after this PR,it will same as ON_HEAP Memory Mode.
Because when acquire memory is between `maxOffHeapStorageMemory` and `maxOffHeapMemory`,it will fail surely, so if acquire memory is greater than  `maxOffHeapStorageMemory`(not greater than `maxOffHeapMemory`),we should fail fast.
2. Borrow memory from execution, `numBytes` modified to `numBytes - storagePool.memoryFree` will be more reasonable.
Because we just acquire `(numBytes - storagePool.memoryFree)`, unnecessary borrowed `numBytes` from execution

## How was this patch tested?
added unit test case

Author: liuxian <liu.xian3@zte.com.cn>

Closes #18296 from 10110346/wip-lx-0614.
2017-06-19 11:46:58 +08:00
zuotingbing edcb878e2f [SPARK-20338][CORE] Spaces in spark.eventLog.dir are not correctly handled
## What changes were proposed in this pull request?

“spark.eventLog.dir” supports with space characters.

1. Update EventLoggingListenerSuite like `testDir = Utils.createTempDir(namePrefix = s"history log")`
2. Fix EventLoggingListenerSuite tests

## How was this patch tested?

update unit tests

Author: zuotingbing <zuo.tingbing9@zte.com.cn>

Closes #18285 from zuotingbing/spark-resolveURI.
2017-06-16 10:34:52 -07:00
jerryshao 2837b14cdc [SPARK-12552][FOLLOWUP] Fix flaky test for "o.a.s.deploy.master.MasterSuite.master correctly recover the application"
## What changes were proposed in this pull request?

Due to the RPC asynchronous event processing, The test "correctly recover the application" could potentially be failed. The issue could be found in here: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/78126/testReport/org.apache.spark.deploy.master/MasterSuite/master_correctly_recover_the_application/.

So here fixing this flaky test.

## How was this patch tested?

Existing UT.

CC cloud-fan jiangxb1987 , please help to review, thanks!

Author: jerryshao <sshao@hortonworks.com>

Closes #18321 from jerryshao/SPARK-12552-followup.
2017-06-16 14:24:15 +08:00
Michael Gummelt a18d637112 [SPARK-20434][YARN][CORE] Move Hadoop delegation token code from yarn to core
## What changes were proposed in this pull request?

Move Hadoop delegation token code from `spark-yarn` to `spark-core`, so that other schedulers (such as Mesos), may use it.  In order to avoid exposing Hadoop interfaces in spark-core, the new Hadoop delegation token classes are kept private.  In order to provider backward compatiblity, and to allow YARN users to continue to load their own delegation token providers via Java service loading, the old YARN interfaces, as well as the client code that uses them, have been retained.

Summary:
- Move registered `yarn.security.ServiceCredentialProvider` classes from `spark-yarn` to `spark-core`.  Moved them into a new, private hierarchy under `HadoopDelegationTokenProvider`.  Client code in `HadoopDelegationTokenManager` now loads credentials from a whitelist of three providers (`HadoopFSDelegationTokenProvider`, `HiveDelegationTokenProvider`, `HBaseDelegationTokenProvider`), instead of service loading, which means that users are not able to implement their own delegation token providers, as they are in the `spark-yarn` module.

- The `yarn.security.ServiceCredentialProvider` interface has been kept for backwards compatibility, and to continue to allow YARN users to implement their own delegation token provider implementations.  Client code in YARN now fetches tokens via the new `YARNHadoopDelegationTokenManager` class, which fetches tokens from the core providers through `HadoopDelegationTokenManager`, as well as service loads them from `yarn.security.ServiceCredentialProvider`.

Old Hierarchy:

```
yarn.security.ServiceCredentialProvider (service loaded)
  HadoopFSCredentialProvider
  HiveCredentialProvider
  HBaseCredentialProvider
yarn.security.ConfigurableCredentialManager
```

New Hierarchy:

```
HadoopDelegationTokenManager
HadoopDelegationTokenProvider (not service loaded)
  HadoopFSDelegationTokenProvider
  HiveDelegationTokenProvider
  HBaseDelegationTokenProvider

yarn.security.ServiceCredentialProvider (service loaded)
yarn.security.YARNHadoopDelegationTokenManager
```
## How was this patch tested?

unit tests

Author: Michael Gummelt <mgummelt@mesosphere.io>
Author: Dr. Stefan Schimanski <sttts@mesosphere.io>

Closes #17723 from mgummelt/SPARK-20434-refactor-kerberos.
2017-06-15 11:46:00 -07:00
Xingbo Jiang 7dc3e697c7 [SPARK-16251][SPARK-20200][CORE][TEST] Flaky test: org.apache.spark.rdd.LocalCheckpointSuite.missing checkpoint block fails with informative message
## What changes were proposed in this pull request?

Currently we don't wait to confirm the removal of the block from the slave's BlockManager, if the removal takes too much time, we will fail the assertion in this test case.
The failure can be easily reproduced if we sleep for a while before we remove the block in BlockManagerSlaveEndpoint.receiveAndReply().

## How was this patch tested?
N/A

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #18314 from jiangxb1987/LocalCheckpointSuite.
2017-06-16 00:06:54 +08:00
Li Yichao 2924674406 [SPARK-19900][CORE] Remove driver when relaunching.
This is https://github.com/apache/spark/pull/17888 .

Below are some spark ui snapshots.

Master, after worker disconnects:

<img width="1433" alt="master_disconnect" src="https://cloud.githubusercontent.com/assets/2576762/26398687/d0ee228e-40ac-11e7-986d-d3b57b87029f.png">

Master, after worker reconnects, notice the `running drivers` part:

<img width="1412" alt="master_reconnects" src="https://cloud.githubusercontent.com/assets/2576762/26398697/d50735a4-40ac-11e7-80d8-6e9e1cf0b62f.png">

This patch, after worker disconnects:
<img width="1412" alt="patch_disconnect" src="https://cloud.githubusercontent.com/assets/2576762/26398009/c015d3dc-40aa-11e7-8bb4-df11a1f66645.png">

This patch, after worker reconnects:
![image](https://cloud.githubusercontent.com/assets/2576762/26398037/d313769c-40aa-11e7-8613-5f157d193150.png)

cc cloud-fan jiangxb1987

Author: Li Yichao <lyc@zhihu.com>

Closes #18084 from liyichao/SPARK-19900-1.
2017-06-15 08:08:26 +08:00
Sean Owen d6f76eb346 [SPARK-21057][ML] Do not use a PascalDistribution in countApprox
## What changes were proposed in this pull request?

Use Poisson analysis for approx count in all cases.

## How was this patch tested?

Existing tests.

Author: Sean Owen <sowen@cloudera.com>

Closes #18276 from srowen/SPARK-21057.
2017-06-14 09:01:20 +01:00
Sital Kedia dccc0aa3cf [SPARK-19753][CORE] Un-register all shuffle output on a host in case of slave lost or fetch failure
## What changes were proposed in this pull request?

Currently, when we detect fetch failure, we only remove the shuffle files produced by the executor, while the host itself might be down and all the shuffle files are not accessible. In case we are running multiple executors on a host, any host going down currently results in multiple fetch failures and multiple retries of the stage, which is very inefficient. If we remove all the shuffle files on that host, on first fetch failure, we can rerun all the tasks on that host in a single stage retry.

## How was this patch tested?

Unit testing and also ran a job on the cluster and made sure multiple retries are gone.

Author: Sital Kedia <skedia@fb.com>
Author: Imran Rashid <irashid@cloudera.com>

Closes #18150 from sitalkedia/cleanup_shuffle.
2017-06-14 11:34:09 +08:00
jerryshao 9eb095243b [SPARK-12552][CORE] Correctly count the driver resource when recovering from failure for Master
Currently in Standalone HA mode, the resource usage of driver is not correctly counted in Master when recovering from failure, this will lead to some unexpected behaviors like negative value in UI.

So here fix this to also count the driver's resource usage.

Also changing the recovered app's state to `RUNNING` when fully recovered. Previously it will always be WAITING even fully recovered.

andrewor14 please help to review, thanks a lot.

Author: jerryshao <sshao@hortonworks.com>

Closes #10506 from jerryshao/SPARK-12552.
2017-06-14 08:12:15 +08:00
liuxian 7ba8bf288d [SPARK-21016][CORE] Improve code fault tolerance for converting string to number
## What changes were proposed in this pull request?
When converting `string` to `number`(int, long or double),  if the string has a space before or after,will lead to unnecessary mistakes.

## How was this patch tested?
unit test

Author: liuxian <liu.xian3@zte.com.cn>

Closes #18238 from 10110346/lx-wip-0608.
2017-06-13 10:12:28 -07:00
DjvuLee b36ce2a246 [SPARK-21064][CORE][TEST] Fix the default value bug in NettyBlockTransferServiceSuite
## What changes were proposed in this pull request?

The default value for `spark.port.maxRetries` is 100,
but we use 10 in the suite file.
So we change it to 100 to avoid test failure.

## How was this patch tested?
No test

Author: DjvuLee <lihu@bytedance.com>

Closes #18280 from djvulee/NettyTestBug.
2017-06-13 15:56:03 +01:00
guoxiaolong b7304f2559 [SPARK-21060][WEB-UI] Css style about paging function is error in the executor page. Css style about paging function is error in the executor page. It is different of history server ui paging function css style.
## What changes were proposed in this pull request?

Css style about paging function is error in the executor page. It is different of history server ui paging function css style.

**But their style should be consistent**. There are three reasons.

1. The first reason: 'Previous', 'Next' and number should be the button format.

2. The second reason: when you are on the first page, 'Previous' and '1' should be gray and can not be clicked.
![1](https://user-images.githubusercontent.com/26266482/27026667-1fe745ee-4f91-11e7-8b34-150819d22bd3.png)

3. The third reason: when you are on the last page, 'Previous' and 'Max number' should be gray and can not be clicked.
![2](https://user-images.githubusercontent.com/26266482/27026811-9d8d6fa0-4f91-11e7-8b51-7816c3feb381.png)

before fix:
![fix_before](https://user-images.githubusercontent.com/26266482/27026428-47ec5c56-4f90-11e7-9dd5-d52c22d7bd36.png)

after fix:
![fix_after](https://user-images.githubusercontent.com/26266482/27026439-50d17072-4f90-11e7-8405-6f81da5ab32c.png)

The style of history server ui:
![history](https://user-images.githubusercontent.com/26266482/27026528-9c90f780-4f90-11e7-91e6-90d32651fe03.png)

## How was this patch tested?

manual tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>

Closes #18275 from guoxiaolongzte/SPARK-21060.
2017-06-13 15:38:11 +01:00
liuxian 2aaed0a4db [SPARK-21006][TESTS][FOLLOW-UP] Some Worker's RpcEnv is leaked in WorkerSuite
## What changes were proposed in this pull request?

Create rpcEnv and run later needs shutdown. as #18226

## How was this patch tested?
unit test

Author: liuxian <liu.xian3@zte.com.cn>

Closes #18259 from 10110346/wip-lx-0610.
2017-06-13 12:29:50 +01:00
Felix Cheung 278ba7a2c6 [TEST][SPARKR][CORE] Fix broken SparkSubmitSuite
## What changes were proposed in this pull request?

Fix test file path. This is broken in #18264 and undetected since R-only changes don't build core and subsequent post-commit with the change built fine (again because it wasn't building core)

actually appveyor builds everything but it's not running scala suites ...

## How was this patch tested?

jenkins
srowen gatorsmile

Author: Felix Cheung <felixcheung_m@hotmail.com>

Closes #18283 from felixcheung/rsubmitsuite.
2017-06-12 22:08:49 -07:00
Josh Rosen 3476390c6e [SPARK-20715] Store MapStatuses only in MapOutputTracker, not ShuffleMapStage
## What changes were proposed in this pull request?

This PR refactors `ShuffleMapStage` and `MapOutputTracker` in order to simplify the management of `MapStatuses`, reduce driver memory consumption, and remove a potential source of scheduler correctness bugs.

### Background

In Spark there are currently two places where MapStatuses are tracked:

- The `MapOutputTracker` maintains an `Array[MapStatus]` storing a single location for each map output. This mapping is used by the `DAGScheduler` for determining reduce-task locality preferences (when locality-aware reduce task scheduling is enabled) and is also used to serve map output locations to executors / tasks.
- Each `ShuffleMapStage` also contains a mapping of `Array[List[MapStatus]]` which holds the complete set of locations where each map output could be available. This mapping is used to determine which map tasks need to be run when constructing `TaskSets` for the stage.

This duplication adds complexity and creates the potential for certain types of correctness bugs.  Bad things can happen if these two copies of the map output locations get out of sync. For instance, if the `MapOutputTracker` is missing locations for a map output but `ShuffleMapStage` believes that locations are available then tasks will fail with `MetadataFetchFailedException` but `ShuffleMapStage` will not be updated to reflect the missing map outputs, leading to situations where the stage will be reattempted (because downstream stages experienced fetch failures) but no task sets will be launched (because `ShuffleMapStage` thinks all maps are available).

I observed this behavior in a real-world deployment. I'm still not quite sure how the state got out of sync in the first place, but we can completely avoid this class of bug if we eliminate the duplicate state.

### Why we only need to track a single location for each map output

I think that storing an `Array[List[MapStatus]]` in `ShuffleMapStage` is unnecessary.

First, note that this adds memory/object bloat to the driver we need one extra `List` per task. If you have millions of tasks across all stages then this can add up to be a significant amount of resources.

Secondly, I believe that it's extremely uncommon that these lists will ever contain more than one entry. It's not impossible, but is very unlikely given the conditions which must occur for that to happen:

- In normal operation (no task failures) we'll only run each task once and thus will have at most one output.
- If speculation is enabled then it's possible that we'll have multiple attempts of a task. The TaskSetManager will [kill duplicate attempts of a task](04901dd03a/core/src/main/scala/org/apache/spark/scheduler/TaskSetManager.scala (L717)) after a task finishes successfully, reducing the likelihood that both the original and speculated task will successfully register map outputs.
- There is a [comment in `TaskSetManager`](04901dd03a/core/src/main/scala/org/apache/spark/scheduler/TaskSetManager.scala (L113)) which suggests that running tasks are not killed if a task set becomes a zombie. However:
  - If the task set becomes a zombie due to the job being cancelled then it doesn't matter whether we record map outputs.
  - If the task set became a zombie because of a stage failure (e.g. the map stage itself had a fetch failure from an upstream match stage) then I believe that the "failedEpoch" will be updated which may cause map outputs from still-running tasks to [be ignored](04901dd03a/core/src/main/scala/org/apache/spark/scheduler/DAGScheduler.scala (L1213)). (I'm not 100% sure on this point, though).
- Even if you _do_ manage to record multiple map outputs for a stage, only a single map output is reported to / tracked by the MapOutputTracker. The only situation where the additional output locations could actually be read or used would be if a task experienced a `FetchFailure` exception. The most likely cause of a `FetchFailure` exception is an executor lost, which will have most likely caused the loss of several map tasks' output, so saving on potential re-execution of a single map task isn't a huge win if we're going to have to recompute several other lost map outputs from other tasks which ran on that lost executor. Also note that the re-population of MapOutputTracker state from state in the ShuffleMapTask only happens after the reduce stage has failed; the additional location doesn't help to prevent FetchFailures but, instead, can only reduce the amount of work when recomputing missing parent stages.

Given this, this patch chooses to do away with tracking multiple locations for map outputs and instead stores only a single location. This change removes the main distinction between the `ShuffleMapTask` and `MapOutputTracker`'s copies of this state, paving the way for storing it only in the `MapOutputTracker`.

### Overview of other changes

- Significantly simplified the cache / lock management inside of the `MapOutputTrackerMaster`:
  - The old code had several parallel `HashMap`s which had to be guarded by maps of `Object`s which were used as locks. This code was somewhat complicated to follow.
  - The new code uses a new `ShuffleStatus` class to group together all of the state associated with a particular shuffle, including cached serialized map statuses, significantly simplifying the logic.
- Moved more code out of the shared `MapOutputTracker` abstract base class and into the `MapOutputTrackerMaster` and `MapOutputTrackerWorker` subclasses. This makes it easier to reason about which functionality needs to be supported only on the driver or executor.
- Removed a bunch of code from the `DAGScheduler` which was used to synchronize information from the `MapOutputTracker` to `ShuffleMapStage`.
- Added comments to clarify the role of `MapOutputTrackerMaster`'s `epoch` in invalidating executor-side shuffle map output caches.

I will comment on these changes via inline GitHub review comments.

/cc hvanhovell and rxin (whom I discussed this with offline), tgravescs (who recently worked on caching of serialized MapOutputStatuses), and kayousterhout and markhamstra (for scheduler changes).

## How was this patch tested?

Existing tests. I purposely avoided making interface / API which would require significant updates or modifications to test code.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #17955 from JoshRosen/map-output-tracker-rewrite.
2017-06-11 18:34:12 -07:00
guoxiaolong 82faacd791 [SPARK-20997][CORE] driver-cores' standalone or Mesos or YARN in Cluster deploy mode only.
## What changes were proposed in this pull request?

'--driver-cores'  standalone or Mesos or YARN in Cluster deploy mode only.So  The description of spark-submit about it is not very accurate.

## How was this patch tested?

manual tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>

Closes #18241 from guoxiaolongzte/SPARK-20997.
2017-06-09 14:26:54 +01:00
Joseph K. Bradley 5a3371883a [SPARK-14408][CORE] Changed RDD.treeAggregate to use fold instead of reduce
## What changes were proposed in this pull request?

Previously, `RDD.treeAggregate` used `reduceByKey` and `reduce` in its implementation, neither of which technically allows the `seq`/`combOps` to modify and return their first arguments.

This PR uses `foldByKey` and `fold` instead and notes that `aggregate` and `treeAggregate` are semantically identical in the Scala doc.

Note that this had some test failures by unknown reasons. This was actually fixed in e3554605b3.

The root cause was, the `zeroValue` now becomes `AFTAggregator` and it compares `totalCnt` (where the value is actually 0). It starts merging one by one and it keeps returning `this` where `totalCnt` is 0. So, this looks not the bug in the current change.

This is now fixed in the commit. So, this should pass the tests.

## How was this patch tested?

Test case added in `RDDSuite`.

Closes #12217

Author: Joseph K. Bradley <joseph@databricks.com>
Author: hyukjinkwon <gurwls223@gmail.com>

Closes #18198 from HyukjinKwon/SPARK-14408.
2017-06-09 08:53:18 +01:00
Josh Rosen 2a23cdd078 [SPARK-20863] Add metrics/instrumentation to LiveListenerBus
## What changes were proposed in this pull request?

This patch adds Coda Hale metrics for instrumenting the `LiveListenerBus` in order to track the number of events received, dropped, and processed. In addition, it adds per-SparkListener-subclass timers to track message processing time. This is useful for identifying when slow third-party SparkListeners cause performance bottlenecks.

See the new `LiveListenerBusMetrics` for a complete description of the new metrics.

## How was this patch tested?

New tests in SparkListenerSuite, including a test to ensure proper counting of dropped listener events.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #18083 from JoshRosen/listener-bus-metrics.
2017-06-08 18:08:25 -07:00
10087686 9be7945861 [SPARK-21006][TESTS] Create rpcEnv and run later needs shutdown and awaitTermination
Signed-off-by: 10087686 <wang.jiaochunzte.com.cn>

## What changes were proposed in this pull request?
When  run test("port conflict") case, we need run anotherEnv.shutdown() and anotherEnv.awaitTermination() for free resource.
(Please fill in changes proposed in this fix)

## How was this patch tested?
run RpcEnvSuit.scala Utest
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: 10087686 <wang.jiaochun@zte.com.cn>

Closes #18226 from wangjiaochun/master.
2017-06-08 10:58:09 +01:00
jinxing 44de108d74 [SPARK-20985] Stop SparkContext using LocalSparkContext.withSpark
## What changes were proposed in this pull request?
SparkContext should always be stopped after using, thus other tests won't complain that there's only one `SparkContext` can exist.

Author: jinxing <jinxing6042@126.com>

Closes #18204 from jinxing64/SPARK-20985.
2017-06-06 11:14:39 +01:00
jerryshao 06c0544113 [SPARK-20981][SPARKSUBMIT] Add new configuration spark.jars.repositories as equivalence of --repositories
## What changes were proposed in this pull request?

In our use case of launching Spark applications via REST APIs (Livy), there's no way for user to specify command line arguments, all Spark configurations are set through configurations map. For "--repositories" because there's no equivalent Spark configuration, so we cannot specify the custom repository through configuration.

So here propose to add "--repositories" equivalent configuration in Spark.

## How was this patch tested?

New UT added.

Author: jerryshao <sshao@hortonworks.com>

Closes #18201 from jerryshao/SPARK-20981.
2017-06-05 11:06:50 -07:00
liupengcheng 2d39711b05 [SPARK-20945] Fix TID key not found in TaskSchedulerImpl
## What changes were proposed in this pull request?

This pull request fix the TaskScheulerImpl bug in some condition.
Detail see:
https://issues.apache.org/jira/browse/SPARK-20945

(Please fill in changes proposed in this fix)

## How was this patch tested?
manual tests
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: liupengcheng <liupengcheng@xiaomi.com>
Author: PengchengLiu <pengchengliu_bupt@163.com>

Closes #18171 from liupc/Fix-tid-key-not-found-in-TaskSchedulerImpl.
2017-06-05 10:23:04 +01:00
zuotingbing 887cf0ec33 [SPARK-20936][CORE] Lack of an important case about the test of resolveURI in UtilsSuite, and add it as needed.
## What changes were proposed in this pull request?
1.  add `assert(resolve(before) === after)` to check before and after in test of resolveURI.
the function `assertResolves(before: String, after: String)` have two params, it means we should check the before value whether equals the after value which we want.
e.g. the after value of Utils.resolveURI("hdfs:///root/spark.jar#app.jar").toString should be "hdfs:///root/spark.jar#app.jar" rather than "hdfs:/root/spark.jar#app.jar". we need `assert(resolve(before) === after)` to make it more safe.
2. identify the cases between resolveURI and resolveURIs.
3. delete duplicate cases and some small fix make this suit more clear.

## How was this patch tested?

unit tests

Author: zuotingbing <zuo.tingbing9@zte.com.cn>

Closes #18158 from zuotingbing/spark-UtilsSuite.
2017-06-03 09:56:35 +01:00
Shixiong Zhu 16186cdcbc [SPARK-20955][CORE] Intern "executorId" to reduce the memory usage
## What changes were proposed in this pull request?

In [this line](f7cf2096fd/core/src/main/scala/org/apache/spark/scheduler/cluster/CoarseGrainedSchedulerBackend.scala (L128)), it uses the `executorId` string received from executors and finally it will go into `TaskUIData`. As deserializing the `executorId` string will always create a new instance, we have a lot of duplicated string instances.

This PR does a String interning for TaskUIData to reduce the memory usage.

## How was this patch tested?

Manually test using `bin/spark-shell --master local-cluster[6,1,1024]`. Test codes:
```
for (_ <- 1 to 10) { sc.makeRDD(1 to 1000, 1000).count() }
Thread.sleep(2000)
val l = sc.getClass.getMethod("jobProgressListener").invoke(sc).asInstanceOf[org.apache.spark.ui.jobs.JobProgressListener]
org.apache.spark.util.SizeEstimator.estimate(l.stageIdToData)
```
This PR reduces the size of `stageIdToData` from 3487280 to 3009744 (86.3%) in the above case.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #18177 from zsxwing/SPARK-20955.
2017-06-02 10:33:21 -07:00
guoxiaolong 625cebfde6 [SPARK-20942][WEB-UI] The title style about field is error in the history server web ui.
## What changes were proposed in this pull request?

1.The title style about field is error.
fix before:
![before](https://cloud.githubusercontent.com/assets/26266482/26661987/a7bed018-46b3-11e7-8a54-a5152d2df0f4.png)

fix after:
![fix](https://cloud.githubusercontent.com/assets/26266482/26662000/ba6cc814-46b3-11e7-8f33-cfd4cc2c60fe.png)

![fix1](https://cloud.githubusercontent.com/assets/26266482/26662080/3c732e3e-46b4-11e7-8768-20b5a6aeadcb.png)

executor-page style:
![executor_page](https://cloud.githubusercontent.com/assets/26266482/26662384/167cbd10-46b6-11e7-9e07-bf391dbc6e08.png)

2.Title text description, 'the application' should be changed to 'this application'.

3.Analysis of code:
 $('#history-summary [data-toggle="tooltip"]').tooltip();
The id of 'history-summary' is not there. We only contain id of 'history-summary-table'.

## How was this patch tested?

manual tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>

Closes #18170 from guoxiaolongzte/SPARK-20942.
2017-06-02 14:38:00 +01:00
Dongjoon Hyun 34661d8a5a [SPARK-20708][CORE] Make addExclusionRules up-to-date
## What changes were proposed in this pull request?

Since [SPARK-9263](https://issues.apache.org/jira/browse/SPARK-9263), `resolveMavenCoordinates` ignores Spark and Spark's dependencies by using `addExclusionRules`. This PR aims to make [addExclusionRules](https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/deploy/SparkSubmit.scala#L956-L974) up-to-date to neglect correctly because it fails to neglect some components like the following.

**mllib (correct)**
```
$ bin/spark-shell --packages org.apache.spark:spark-mllib_2.11:2.1.1
...
---------------------------------------------------------------------
|                  |            modules            ||   artifacts   |
|       conf       | number| search|dwnlded|evicted|| number|dwnlded|
---------------------------------------------------------------------
|      default     |   0   |   0   |   0   |   0   ||   0   |   0   |
---------------------------------------------------------------------
```

**mllib-local (wrong)**
```
$ bin/spark-shell --packages org.apache.spark:spark-mllib-local_2.11:2.1.1
...
---------------------------------------------------------------------
|                  |            modules            ||   artifacts   |
|       conf       | number| search|dwnlded|evicted|| number|dwnlded|
---------------------------------------------------------------------
|      default     |   15  |   2   |   2   |   0   ||   15  |   2   |
---------------------------------------------------------------------
```

## How was this patch tested?

Pass the Jenkins with a updated test case.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #17947 from dongjoon-hyun/SPARK-20708.
2017-05-31 22:39:25 -07:00
jerryshao 5854f77ce1 [SPARK-20244][CORE] Handle incorrect bytesRead metrics when using PySpark
## What changes were proposed in this pull request?

Hadoop FileSystem's statistics in based on thread local variables, this is ok if the RDD computation chain is running in the same thread. But if child RDD creates another thread to consume the iterator got from Hadoop RDDs, the bytesRead computation will be error, because now the iterator's `next()` and `close()` may run in different threads. This could be happened when using PySpark with PythonRDD.

So here building a map to track the `bytesRead` for different thread and add them together. This method will be used in three RDDs, `HadoopRDD`, `NewHadoopRDD` and `FileScanRDD`. I assume `FileScanRDD` cannot be called directly, so I only fixed `HadoopRDD` and `NewHadoopRDD`.

## How was this patch tested?

Unit test and local cluster verification.

Author: jerryshao <sshao@hortonworks.com>

Closes #17617 from jerryshao/SPARK-20244.
2017-05-31 22:34:53 -07:00
Shixiong Zhu 24db35826a [SPARK-20940][CORE] Replace IllegalAccessError with IllegalStateException
## What changes were proposed in this pull request?

`IllegalAccessError` is a fatal error (a subclass of LinkageError) and its meaning is `Thrown if an application attempts to access or modify a field, or to call a method that it does not have access to`. Throwing a fatal error for AccumulatorV2 is not necessary and is pretty bad because it usually will just kill executors or SparkContext ([SPARK-20666](https://issues.apache.org/jira/browse/SPARK-20666) is an example of killing SparkContext due to `IllegalAccessError`). I think the correct type of exception in AccumulatorV2 should be `IllegalStateException`.

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #18168 from zsxwing/SPARK-20940.
2017-05-31 17:26:18 -07:00
jinxing ac7fc3075b [SPARK-20288] Avoid generating the MapStatus by stageId in BasicSchedulerIntegrationSuite
## What changes were proposed in this pull request?

ShuffleId is determined before job submitted. But it's hard to predict stageId by shuffleId.
Stage is created in DAGScheduler(
https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/scheduler/DAGScheduler.scala#L381), but the order is n
ot determined in `HashSet`.
I added a log(println(s"Creating ShufflMapStage-$id on shuffle-${shuffleDep.shuffleId}")) after (https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/scheduler/DAGScheduler.scala#L331), when testing BasicSchedulerIntegrationSuite:"multi-stage job". It will print:
Creating ShufflMapStage-0 on shuffle-0
Creating ShufflMapStage-1 on shuffle-2
Creating ShufflMapStage-2 on shuffle-1
Creating ShufflMapStage-3 on shuffle-3
or
Creating ShufflMapStage-0 on shuffle-1
Creating ShufflMapStage-1 on shuffle-3
Creating ShufflMapStage-2 on shuffle-0
Creating ShufflMapStage-3 on shuffle-2
It might be better to avoid generating the MapStatus by stageId.

Author: jinxing <jinxing6042@126.com>

Closes #17603 from jinxing64/SPARK-20288.
2017-05-31 10:46:23 -05:00
jerryshao 52ed9b289d [SPARK-20275][UI] Do not display "Completed" column for in-progress applications
## What changes were proposed in this pull request?

Current HistoryServer will display completed date of in-progress application as `1969-12-31 23:59:59`, which is not so meaningful. Instead of unnecessarily showing this incorrect completed date, here propose to make this column invisible for in-progress applications.

The purpose of only making this column invisible rather than deleting this field is that: this data is fetched through REST API, and in the REST API  the format is like below shows, in which `endTime` matches `endTimeEpoch`. So instead of changing REST API to break backward compatibility, here choosing a simple solution to only make this column invisible.

```
[ {
  "id" : "local-1491805439678",
  "name" : "Spark shell",
  "attempts" : [ {
    "startTime" : "2017-04-10T06:23:57.574GMT",
    "endTime" : "1969-12-31T23:59:59.999GMT",
    "lastUpdated" : "2017-04-10T06:23:57.574GMT",
    "duration" : 0,
    "sparkUser" : "",
    "completed" : false,
    "startTimeEpoch" : 1491805437574,
    "endTimeEpoch" : -1,
    "lastUpdatedEpoch" : 1491805437574
  } ]
} ]%
```

Here is UI before changed:

<img width="1317" alt="screen shot 2017-04-10 at 3 45 57 pm" src="https://cloud.githubusercontent.com/assets/850797/24851938/17d46cc0-1e08-11e7-84c7-90120e171b41.png">

And after:

<img width="1281" alt="screen shot 2017-04-10 at 4 02 35 pm" src="https://cloud.githubusercontent.com/assets/850797/24851945/1fe9da58-1e08-11e7-8d0d-9262324f9074.png">

## How was this patch tested?

Manual verification.

Author: jerryshao <sshao@hortonworks.com>

Closes #17588 from jerryshao/SPARK-20275.
2017-05-30 20:24:43 -07:00
jinxing de953c214c [SPARK-20333] HashPartitioner should be compatible with num of child RDD's partitions.
## What changes were proposed in this pull request?

Fix test
"don't submit stage until its dependencies map outputs are registered (SPARK-5259)" ,
"run trivial shuffle with out-of-band executor failure and retry",
"reduce tasks should be placed locally with map output"
in DAGSchedulerSuite.

Author: jinxing <jinxing6042@126.com>

Closes #17634 from jinxing64/SPARK-20333.
2017-05-30 14:02:33 -05:00
liuzhaokun 8faffc4167 [SPARK-20875] Spark should print the log when the directory has been deleted
[https://issues.apache.org/jira/browse/SPARK-20875](https://issues.apache.org/jira/browse/SPARK-20875)
When the "deleteRecursively" method is invoked,spark doesn't print any log if the path was deleted.For example,spark only print "Removing directory" when the worker began cleaning spark.work.dir,but didn't print any log about "the path has been delete".So, I can't judge whether the path was deleted form the worker's logfile,If there is any accidents about Linux.

Author: liuzhaokun <liu.zhaokun@zte.com.cn>

Closes #18102 from liu-zhaokun/master_log.
2017-05-27 13:26:01 +01:00
Shixiong Zhu 6c1dbd6fc8 [SPARK-20843][CORE] Add a config to set driver terminate timeout
## What changes were proposed in this pull request?

Add a `worker` configuration to set how long to wait before forcibly killing driver.

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #18126 from zsxwing/SPARK-20843.
2017-05-26 22:25:38 -07:00
Wenchen Fan 1d62f8aca8 [SPARK-19659][CORE][FOLLOW-UP] Fetch big blocks to disk when shuffle-read
## What changes were proposed in this pull request?

This PR includes some minor improvement for the comments and tests in https://github.com/apache/spark/pull/16989

## How was this patch tested?

N/A

Author: Wenchen Fan <wenchen@databricks.com>

Closes #18117 from cloud-fan/follow.
2017-05-27 10:57:43 +08:00
Yu Peng 4af3781291 [SPARK-10643][CORE] Make spark-submit download remote files to local in client mode
## What changes were proposed in this pull request?

This PR makes spark-submit script download remote files to local file system for local/standalone client mode.

## How was this patch tested?

- Unit tests
- Manual tests by adding s3a jar and testing against file on s3.

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Yu Peng <loneknightpy@gmail.com>

Closes #18078 from loneknightpy/download-jar-in-spark-submit.
2017-05-26 16:28:36 -07:00
Sital Kedia 473d7552ac [SPARK-20014] Optimize mergeSpillsWithFileStream method
## What changes were proposed in this pull request?

When the individual partition size in a spill is small, mergeSpillsWithTransferTo method does many small disk ios which is really inefficient. One way to improve the performance will be to use mergeSpillsWithFileStream method by turning off transfer to and using buffered file read/write to improve the io throughput.
However, the current implementation of mergeSpillsWithFileStream does not do a buffer read/write of the files and in addition to that it unnecessarily flushes the output files for each partitions.

## How was this patch tested?

Tested this change by running a job on the cluster and the map stage run time was reduced by around 20%.

Author: Sital Kedia <skedia@fb.com>

Closes #17343 from sitalkedia/upstream_mergeSpillsWithFileStream.
2017-05-26 13:41:13 -07:00
10129659 0fd84b05dc [SPARK-20835][CORE] It should exit directly when the --total-executor-cores parameter is setted less than 0 when submit a application
## What changes were proposed in this pull request?
In my test, the submitted app running with out an error when the --total-executor-cores less than 0
and given the warnings:
"2017-05-22 17:19:36,319 WARN org.apache.spark.scheduler.TaskSchedulerImpl: Initial job has not accepted any resources; check your cluster UI to ensure that workers are registered and have sufficient resources";

It should exit directly when the --total-executor-cores parameter is setted less than 0 when submit a application
(Please fill in changes proposed in this fix)

## How was this patch tested?
Run the ut tests
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: 10129659 <chen.yanshan@zte.com.cn>

Closes #18060 from eatoncys/totalcores.
2017-05-26 18:03:23 +01:00
Wenchen Fan 629f38e171 [SPARK-20887][CORE] support alternative keys in ConfigBuilder
## What changes were proposed in this pull request?

`ConfigBuilder` builds `ConfigEntry` which can only read value with one key, if we wanna change the config name but still keep the old one, it's hard to do.

This PR introduce `ConfigBuilder.withAlternative`, to support reading config value with alternative keys. And also rename `spark.scheduler.listenerbus.eventqueue.size` to `spark.scheduler.listenerbus.eventqueue.capacity` with this feature, according to https://github.com/apache/spark/pull/14269#discussion_r118432313

## How was this patch tested?

a new test

Author: Wenchen Fan <wenchen@databricks.com>

Closes #18110 from cloud-fan/config.
2017-05-26 21:13:38 +08:00
Wenchen Fan d9ad78908f [SPARK-20868][CORE] UnsafeShuffleWriter should verify the position after FileChannel.transferTo
## What changes were proposed in this pull request?

Long time ago we fixed a [bug](https://issues.apache.org/jira/browse/SPARK-3948) in shuffle writer about `FileChannel.transferTo`. We were not very confident about that fix, so we added a position check after the writing, try to discover the bug earlier.

 However this checking is missing in the new `UnsafeShuffleWriter`, this PR adds it.

https://issues.apache.org/jira/browse/SPARK-18105 maybe related to that `FileChannel.transferTo` bug, hopefully we can find out the root cause after adding this position check.

## How was this patch tested?

N/A

Author: Wenchen Fan <wenchen@databricks.com>

Closes #18091 from cloud-fan/shuffle.
2017-05-26 15:01:28 +08:00
hyukjinkwon e9f983df27 [SPARK-19707][SPARK-18922][TESTS][SQL][CORE] Fix test failures/the invalid path check for sc.addJar on Windows
## What changes were proposed in this pull request?

This PR proposes two things:

- A follow up for SPARK-19707 (Improving the invalid path check for sc.addJar on Windows as well).

```
org.apache.spark.SparkContextSuite:
 - add jar with invalid path *** FAILED *** (32 milliseconds)
   2 was not equal to 1 (SparkContextSuite.scala:309)
   ...
```

- Fix path vs URI related test failures on Windows.

```
org.apache.spark.storage.LocalDirsSuite:
 - SPARK_LOCAL_DIRS override also affects driver *** FAILED *** (0 milliseconds)
   new java.io.File("/NONEXISTENT_PATH").exists() was true (LocalDirsSuite.scala:50)
   ...

 - Utils.getLocalDir() throws an exception if any temporary directory cannot be retrieved *** FAILED *** (15 milliseconds)
   Expected exception java.io.IOException to be thrown, but no exception was thrown. (LocalDirsSuite.scala:64)
   ...
```

```
org.apache.spark.sql.hive.HiveSchemaInferenceSuite:
 - orc: schema should be inferred and saved when INFER_AND_SAVE is specified *** FAILED *** (203 milliseconds)
   java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-dae61ab3-a851-4dd3-bf4e-be97c501f254
   ...

 - parquet: schema should be inferred and saved when INFER_AND_SAVE is specified *** FAILED *** (203 milliseconds)
   java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-fa3aff89-a66e-4376-9a37-2a9b87596939
   ...

 - orc: schema should be inferred but not stored when INFER_ONLY is specified *** FAILED *** (141 milliseconds)
   java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-fb464e59-b049-481b-9c75-f53295c9fc2c
   ...

 - parquet: schema should be inferred but not stored when INFER_ONLY is specified *** FAILED *** (125 milliseconds)
   java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-9487568e-80a4-42b3-b0a5-d95314c4ccbc
   ...

 - orc: schema should not be inferred when NEVER_INFER is specified *** FAILED *** (156 milliseconds)
   java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-0d2dfa45-1b0f-4958-a8be-1074ed0135a
   ...

 - parquet: schema should not be inferred when NEVER_INFER is specified *** FAILED *** (547 milliseconds)
   java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-6d95d64e-613e-4a59-a0f6-d198c5aa51ee
   ...
```

```
org.apache.spark.sql.execution.command.DDLSuite:
 - create temporary view using *** FAILED *** (15 milliseconds)
   org.apache.spark.sql.AnalysisException: Path does not exist: file:/C:projectsspark	arget	mpspark-3881d9ca-561b-488d-90b9-97587472b853	mp;
   ...

 - insert data to a data source table which has a non-existing location should succeed *** FAILED *** (109 milliseconds)
   file:/C:projectsspark%09arget%09mpspark-4cad3d19-6085-4b75-b407-fe5e9d21df54 did not equal file:///C:/projects/spark/target/tmp/spark-4cad3d19-6085-4b75-b407-fe5e9d21df54 (DDLSuite.scala:1869)
   ...

 - insert into a data source table with a non-existing partition location should succeed *** FAILED *** (94 milliseconds)
   file:/C:projectsspark%09arget%09mpspark-4b52e7de-e3aa-42fd-95d4-6d4d58d1d95d did not equal file:///C:/projects/spark/target/tmp/spark-4b52e7de-e3aa-42fd-95d4-6d4d58d1d95d (DDLSuite.scala:1910)
   ...

 - read data from a data source table which has a non-existing location should succeed *** FAILED *** (93 milliseconds)
   file:/C:projectsspark%09arget%09mpspark-f8c281e2-08c2-4f73-abbf-f3865b702c34 did not equal file:///C:/projects/spark/target/tmp/spark-f8c281e2-08c2-4f73-abbf-f3865b702c34 (DDLSuite.scala:1937)
   ...

 - read data from a data source table with non-existing partition location should succeed *** FAILED *** (110 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - create datasource table with a non-existing location *** FAILED *** (94 milliseconds)
   file:/C:projectsspark%09arget%09mpspark-387316ae-070c-4e78-9b78-19ebf7b29ec8 did not equal file:///C:/projects/spark/target/tmp/spark-387316ae-070c-4e78-9b78-19ebf7b29ec8 (DDLSuite.scala:1982)
   ...

 - CTAS for external data source table with a non-existing location *** FAILED *** (16 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - CTAS for external data source table with a existed location *** FAILED *** (15 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - data source table:partition column name containing a b *** FAILED *** (125 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - data source table:partition column name containing a:b *** FAILED *** (143 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - data source table:partition column name containing a%b *** FAILED *** (109 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - data source table:partition column name containing a,b *** FAILED *** (109 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - location uri contains a b for datasource table *** FAILED *** (94 milliseconds)
   file:/C:projectsspark%09arget%09mpspark-5739cda9-b702-4e14-932c-42e8c4174480a%20b did not equal file:///C:/projects/spark/target/tmp/spark-5739cda9-b702-4e14-932c-42e8c4174480/a%20b (DDLSuite.scala:2084)
   ...

 - location uri contains a:b for datasource table *** FAILED *** (78 milliseconds)
   file:/C:projectsspark%09arget%09mpspark-9bdd227c-840f-4f08-b7c5-4036638f098da:b did not equal file:///C:/projects/spark/target/tmp/spark-9bdd227c-840f-4f08-b7c5-4036638f098d/a:b (DDLSuite.scala:2084)
   ...

 - location uri contains a%b for datasource table *** FAILED *** (78 milliseconds)
   file:/C:projectsspark%09arget%09mpspark-62bb5f1d-fa20-460a-b534-cb2e172a3640a%25b did not equal file:///C:/projects/spark/target/tmp/spark-62bb5f1d-fa20-460a-b534-cb2e172a3640/a%25b (DDLSuite.scala:2084)
   ...

 - location uri contains a b for database *** FAILED *** (16 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - location uri contains a:b for database *** FAILED *** (15 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - location uri contains a%b for database *** FAILED *** (0 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...
```

```
org.apache.spark.sql.hive.execution.HiveDDLSuite:
 - create hive table with a non-existing location *** FAILED *** (16 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - CTAS for external hive table with a non-existing location *** FAILED *** (16 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - CTAS for external hive table with a existed location *** FAILED *** (16 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - partition column name of parquet table containing a b *** FAILED *** (156 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - partition column name of parquet table containing a:b *** FAILED *** (94 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - partition column name of parquet table containing a%b *** FAILED *** (125 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - partition column name of parquet table containing a,b *** FAILED *** (110 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...

 - partition column name of hive table containing a b *** FAILED *** (15 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - partition column name of hive table containing a:b *** FAILED *** (16 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - partition column name of hive table containing a%b *** FAILED *** (16 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - partition column name of hive table containing a,b *** FAILED *** (0 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - hive table: location uri contains a b *** FAILED *** (0 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - hive table: location uri contains a:b *** FAILED *** (0 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...

 - hive table: location uri contains a%b *** FAILED *** (0 milliseconds)
   org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
   ...
```

```
org.apache.spark.sql.sources.PathOptionSuite:
 - path option also exist for write path *** FAILED *** (94 milliseconds)
   file:/C:projectsspark%09arget%09mpspark-2870b281-7ac0-43d6-b6b6-134e01ab6fdc did not equal file:///C:/projects/spark/target/tmp/spark-2870b281-7ac0-43d6-b6b6-134e01ab6fdc (PathOptionSuite.scala:98)
   ...
```

```
org.apache.spark.sql.CachedTableSuite:
 - SPARK-19765: UNCACHE TABLE should un-cache all cached plans that refer to this table *** FAILED *** (110 milliseconds)
   java.lang.IllegalArgumentException: Can not create a Path from an empty string
   ...
```

```
org.apache.spark.sql.execution.DataSourceScanExecRedactionSuite:
 - treeString is redacted *** FAILED *** (250 milliseconds)
   "file:/C:/projects/spark/target/tmp/spark-3ecc1fa4-3e76-489c-95f4-f0b0500eae28" did not contain "C:\projects\spark\target\tmp\spark-3ecc1fa4-3e76-489c-95f4-f0b0500eae28" (DataSourceScanExecRedactionSuite.scala:46)
   ...
```

## How was this patch tested?

Tested via AppVeyor for each and checked it passed once each. These should be retested via AppVeyor in this PR.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #17987 from HyukjinKwon/windows-20170515.
2017-05-25 17:10:30 +01:00
jinxing 3f94e64aa8 [SPARK-19659] Fetch big blocks to disk when shuffle-read.
## What changes were proposed in this pull request?

Currently the whole block is fetched into memory(off heap by default) when shuffle-read. A block is defined by (shuffleId, mapId, reduceId). Thus it can be large when skew situations. If OOM happens during shuffle read, job will be killed and users will be notified to "Consider boosting spark.yarn.executor.memoryOverhead". Adjusting parameter and allocating more memory can resolve the OOM. However the approach is not perfectly suitable for production environment, especially for data warehouse.
Using Spark SQL as data engine in warehouse, users hope to have a unified parameter(e.g. memory) but less resource wasted(resource is allocated but not used). The hope is strong especially when migrating data engine to Spark from another one(e.g. Hive). Tuning the parameter for thousands of SQLs one by one is very time consuming.
It's not always easy to predict skew situations, when happen, it make sense to fetch remote blocks to disk for shuffle-read, rather than kill the job because of OOM.

In this pr, I propose to fetch big blocks to disk(which is also mentioned in SPARK-3019):

1. Track average size and also the outliers(which are larger than 2*avgSize) in MapStatus;
2. Request memory from `MemoryManager` before fetch blocks and release the memory to `MemoryManager` when `ManagedBuffer` is released.
3. Fetch remote blocks to disk when failing acquiring memory from `MemoryManager`, otherwise fetch to memory.

This is an improvement for memory control when shuffle blocks and help to avoid OOM in scenarios like below:
1. Single huge block;
2. Sizes of many blocks are underestimated in `MapStatus` and the actual footprint of blocks is much larger than the estimated.

## How was this patch tested?
Added unit test in `MapStatusSuite` and `ShuffleBlockFetcherIteratorSuite`.

Author: jinxing <jinxing6042@126.com>

Closes #16989 from jinxing64/SPARK-19659.
2017-05-25 16:11:30 +08:00
Xianyang Liu 731462a04f [SPARK-20250][CORE] Improper OOM error when a task been killed while spilling data
## What changes were proposed in this pull request?

Currently, when a task is calling spill() but it receives a killing request from driver (e.g., speculative task), the `TaskMemoryManager` will throw an `OOM` exception.  And we don't catch `Fatal` exception when a error caused by `Thread.interrupt`. So for `ClosedByInterruptException`, we should throw `RuntimeException` instead of `OutOfMemoryError`.

https://issues.apache.org/jira/browse/SPARK-20250?jql=project%20%3D%20SPARK

## How was this patch tested?

Existing unit tests.

Author: Xianyang Liu <xianyang.liu@intel.com>

Closes #18090 from ConeyLiu/SPARK-20250.
2017-05-25 15:47:59 +08:00
Marcelo Vanzin 95aef660b7 [SPARK-20205][CORE] Make sure StageInfo is updated before sending event.
The DAGScheduler was sending a "stage submitted" event before it properly
updated the event's information. This meant that a listener (e.g. the
even logging listener) could record wrong information about the event.

This change sets the stage's submission time before the event is submitted,
when there are tasks to be executed in the stage.

Tested with existing unit tests.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #17925 from vanzin/SPARK-20205.
2017-05-24 16:57:17 -07:00
Xingbo Jiang d76633e3ca [SPARK-18406][CORE] Race between end-of-task and completion iterator read lock release
## What changes were proposed in this pull request?

When a TaskContext is not propagated properly to all child threads for the task, just like the reported cases in this issue, we fail to get to TID from TaskContext and that causes unable to release the lock and assertion failures. To resolve this, we have to explicitly pass the TID value to the `unlock` method.

## How was this patch tested?

Add new failing regression test case in `RDDSuite`.

Author: Xingbo Jiang <xingbo.jiang@databricks.com>

Closes #18076 from jiangxb1987/completion-iterator.
2017-05-24 15:43:23 +08:00
James Shuster 4dbb63f085 [SPARK-20815][SPARKR] NullPointerException in RPackageUtils#checkManifestForR
## What changes were proposed in this pull request?

- Add a null check to RPackageUtils#checkManifestForR so that jars w/o manifests don't NPE.

## How was this patch tested?

- Unit tests and manual tests.

Author: James Shuster <jshuster@palantir.com>

Closes #18040 from jrshust/feature/r-package-utils.
2017-05-22 21:41:11 -07:00
jinxing 2597674bcc [SPARK-20801] Record accurate size of blocks in MapStatus when it's above threshold.
## What changes were proposed in this pull request?

Currently, when number of reduces is above 2000, HighlyCompressedMapStatus is used to store size of blocks. in HighlyCompressedMapStatus, only average size is stored for non empty blocks. Which is not good for memory control when we shuffle blocks. It makes sense to store the accurate size of block when it's above threshold.

## How was this patch tested?

Added test in MapStatusSuite.

Author: jinxing <jinxing6042@126.com>

Closes #18031 from jinxing64/SPARK-20801.
2017-05-22 22:09:49 +08:00
John Lee aea73be1b4 [SPARK-20813][WEB UI] Fixed Web UI executor page tab search by status not working
## What changes were proposed in this pull request?
On status column of the table, I removed the condition  that forced only the display value to take on values Active, Blacklisted and Dead.

Before the removal, values used for sort and filter for that particular column was True and False.
## How was this patch tested?

Tested with Active, Blacklisted and Dead present as current status.

Author: John Lee <jlee2@yahoo-inc.com>

Closes #18036 from yoonlee95/SPARK-20813.
2017-05-22 14:24:49 +01:00
caoxuewen f1ffc6e71f [SPARK-20609][CORE] Run the SortShuffleSuite unit tests have residual spark_* system directory
## What changes were proposed in this pull request?
This PR solution to run the SortShuffleSuite unit tests have residual spark_* system directory
For example:
OS:Windows 7
After the running SortShuffleSuite unit tests,
the system of TMP directory have '..\AppData\Local\Temp\spark-f64121f9-11b4-4ffd-a4f0-cfca66643503' not deleted

## How was this patch tested?
Run SortShuffleSuite unit test.

Author: caoxuewen <cao.xuewen@zte.com.cn>

Closes #17869 from heary-cao/SortShuffleSuite.
2017-05-22 14:23:23 +01:00
fjh100456 190d8b0b63 [SPARK-20591][WEB UI] Succeeded tasks num not equal in all jobs page and job detail page on spark web ui when speculative task(s) exist.
## What changes were proposed in this pull request?

Modified succeeded num in job detail page from "completed = stageData.completedIndices.size" to "completed = stageData.numCompleteTasks",which making succeeded tasks num in all jobs page and job detail page look more consistent, and more easily to find which stages the speculative task(s) were in.

## How was this patch tested?

manual tests

Author: fjh100456 <fu.jinhua6@zte.com.cn>

Closes #17923 from fjh100456/master.
2017-05-22 13:58:42 +01:00
caoxuewen f398640daa [SPARK-20607][CORE] Add new unit tests to ShuffleSuite
## What changes were proposed in this pull request?

This PR update to two:
1.adds the new unit tests.
  testing would be performed when there is no shuffle stage,
  shuffle will not generate the data file and the index files.
2.Modify the '[SPARK-4085] rerun map stage if reduce stage cannot find its local shuffle file' unit test,
  parallelize is 1 but not is 2, Check the index file and delete.

## How was this patch tested?
The new unit test.

Author: caoxuewen <cao.xuewen@zte.com.cn>

Closes #17868 from heary-cao/ShuffleSuite.
2017-05-19 15:25:03 +01:00
Shixiong Zhu 324a904d8e [SPARK-13747][CORE] Add ThreadUtils.awaitReady and disallow Await.ready
## What changes were proposed in this pull request?

Add `ThreadUtils.awaitReady` similar to `ThreadUtils.awaitResult` and disallow `Await.ready`.

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #17763 from zsxwing/awaitready.
2017-05-17 17:21:46 -07:00
Shixiong Zhu f8e0f0f47c [SPARK-20788][CORE] Fix the Executor task reaper's false alarm warning logs
## What changes were proposed in this pull request?

Executor task reaper may fail to detect if a task is finished or not when a task is finishing but being killed at the same time.

The fix is pretty easy, just flip the "finished" flag when a task is successful.

## How was this patch tested?

Jenkins

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #18021 from zsxwing/SPARK-20788.
2017-05-17 14:13:49 -07:00
Josh Rosen 30e0557dbc [SPARK-20776] Fix perf. problems in JobProgressListener caused by TaskMetrics construction
## What changes were proposed in this pull request?

In

```
./bin/spark-shell --master=local[64]
```

I ran

```
sc.parallelize(1 to 100000, 100000).count()
```
and profiled the time spend in the LiveListenerBus event processing thread. I discovered that the majority of the time was being spent in `TaskMetrics.empty` calls in `JobProgressListener.onTaskStart`. It turns out that we can slightly refactor to remove the need to construct one empty instance per call, greatly improving the performance of this code.

The performance gains here help to avoid an issue where listener events would be dropped because the JobProgressListener couldn't keep up with the throughput.

**Before:**

![image](https://cloud.githubusercontent.com/assets/50748/26133095/95bcd42a-3a59-11e7-8051-a50550e447b8.png)

**After:**

![image](https://cloud.githubusercontent.com/assets/50748/26133070/7935e148-3a59-11e7-8c2d-73d5aa5a2397.png)

## How was this patch tested?

Benchmarks described above.

Author: Josh Rosen <joshrosen@databricks.com>

Closes #18008 from JoshRosen/nametoaccums-improvements.
2017-05-17 13:04:21 +08:00
Shixiong Zhu 9150bca47e [SPARK-20529][CORE] Allow worker and master work with a proxy server
## What changes were proposed in this pull request?

In the current codes, when worker connects to master, master will send its address to the worker. Then worker will save this address and use it to reconnect in case of failure. However, sometimes, this address is not correct. If there is a proxy between master and worker, the address master sent is not the address of proxy.

In this PR, the master address used by the worker will be sent to the master, then master just replies this address back, worker will use this address to reconnect in case of failure. In other words, the worker will use the config master address set in the worker side if possible rather than the master address set in the master side.

There is still one potential issue though. When a master is restarted or takes over leadership, the work will use the address sent from the master to connect. If there is still a proxy between  master and worker, the address may be wrong. However, there is no way to figure it out just in the worker.

## How was this patch tested?

The new added unit test.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #17821 from zsxwing/SPARK-20529.
2017-05-16 10:35:51 -07:00
Wenchen Fan e1aaab1e27 [SPARK-12837][SPARK-20666][CORE][FOLLOWUP] getting name should not fail if accumulator is garbage collected
## What changes were proposed in this pull request?

After https://github.com/apache/spark/pull/17596 , we do not send internal accumulator name to executor side anymore, and always look up the accumulator name in `AccumulatorContext`.

This cause a regression if the accumulator is already garbage collected, this PR fixes this by still sending accumulator name for `SQLMetrics`.

## How was this patch tested?

N/A

Author: Wenchen Fan <wenchen@databricks.com>

Closes #17931 from cloud-fan/bug.
2017-05-15 09:22:06 -07:00
guoxiaolong 8da6e8b1f3 [SPARK-20720][WEB-UI] Executor Summary' should show the exact number, 'Removed Executors' should display the specific number, in the Application Page
## What changes were proposed in this pull request?

When the number of spark worker executors is large, if the specific number is displayed, will better help us to analyze and observe by spark ui.

Although this is a small improvement, but it is indeed very valuable.

After fix:
![executor1](https://cloud.githubusercontent.com/assets/26266482/25986597/2d8e4386-3723-11e7-9c24-e5bff17c26e2.png)

## How was this patch tested?

manual tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>

Closes #17961 from guoxiaolongzte/SPARK-20720.
2017-05-15 07:53:57 +01:00
guoxiaolong 99d5799927 [SPARK-20705][WEB-UI] The sort function can not be used in the master page when you use Firefox or Google Chrome.
## What changes were proposed in this pull request?
When you open the master page, when you use Firefox or Google Chrom, the console of Firefox or Google Chrome is wrong. But The IE  is no problem.
e.g.
![error](https://cloud.githubusercontent.com/assets/26266482/25946143/74467a5c-367c-11e7-8f9f-d3585b1aea88.png)

My Firefox version is 48.0.2.
My Google Chrome version  is 49.0.2623.75 m.

## How was this patch tested?

manual tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>

Closes #17952 from guoxiaolongzte/SPARK-20705.
2017-05-15 07:51:50 +01:00
Shixiong Zhu 7d6ff39106 [SPARK-20702][CORE] TaskContextImpl.markTaskCompleted should not hide the original error
## What changes were proposed in this pull request?

This PR adds an `error` parameter to `TaskContextImpl.markTaskCompleted` to propagate the original error.

It also fixes an issue that `TaskCompletionListenerException.getMessage` doesn't include `previousError`.

## How was this patch tested?

New unit tests.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #17942 from zsxwing/SPARK-20702.
2017-05-12 10:46:44 -07:00
Sean Owen fc8a2b6ee6 [SPARK-20554][BUILD] Remove usage of scala.language.reflectiveCalls
## What changes were proposed in this pull request?

Remove uses of scala.language.reflectiveCalls that are either unnecessary or probably resulting in more complex code. This turned out to be less significant than I thought, but, still worth a touch-up.

## How was this patch tested?

Existing tests.

Author: Sean Owen <sowen@cloudera.com>

Closes #17949 from srowen/SPARK-20554.
2017-05-12 09:55:04 +01:00