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3321 commits

Author SHA1 Message Date
韩田田00222924 82c1ac48a3 [SPARK-25696] The storage memory displayed on spark Application UI is…
… incorrect.

## What changes were proposed in this pull request?
In the reported heartbeat information, the unit of the memory data is bytes, which is converted by the formatBytes() function in the utils.js file before being displayed in the interface. The cardinality of the unit conversion in the formatBytes function is 1000, which should be 1024.
Change the cardinality of the unit conversion in the formatBytes function to 1024.

## How was this patch tested?
 manual tests

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #22683 from httfighter/SPARK-25696.

Lead-authored-by: 韩田田00222924 <han.tiantian@zte.com.cn>
Co-authored-by: han.tiantian@zte.com.cn <han.tiantian@zte.com.cn>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-12-10 18:27:01 -06:00
Wenchen Fan bdf32847b1
[SPARK-26021][SQL][FOLLOWUP] only deal with NaN and -0.0 in UnsafeWriter
## What changes were proposed in this pull request?

A followup of https://github.com/apache/spark/pull/23043

There are 4 places we need to deal with NaN and -0.0:
1. comparison expressions. `-0.0` and `0.0` should be treated as same. Different NaNs should be treated as same.
2. Join keys. `-0.0` and `0.0` should be treated as same. Different NaNs should be treated as same.
3. grouping keys. `-0.0` and `0.0` should be assigned to the same group. Different NaNs should be assigned to the same group.
4. window partition keys. `-0.0` and `0.0` should be treated as same. Different NaNs should be treated as same.

The case 1 is OK. Our comparison already handles NaN and -0.0, and for struct/array/map, we will recursively compare the fields/elements.

Case 2, 3 and 4 are problematic, as they compare `UnsafeRow` binary directly, and different NaNs have different binary representation, and the same thing happens for -0.0 and 0.0.

To fix it, a simple solution is: normalize float/double when building unsafe data (`UnsafeRow`, `UnsafeArrayData`, `UnsafeMapData`). Then we don't need to worry about it anymore.

Following this direction, this PR moves the handling of NaN and -0.0 from `Platform` to `UnsafeWriter`, so that places like `UnsafeRow.setFloat` will not handle them, which reduces the perf overhead. It's also easier to add comments explaining why we do it in `UnsafeWriter`.

## How was this patch tested?

existing tests

Closes #23239 from cloud-fan/minor.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-12-08 11:18:09 -08:00
Takuya UESHIN 1ab3d3e474
[SPARK-26060][SQL][FOLLOW-UP] Rename the config name.
## What changes were proposed in this pull request?

This is a follow-up of #23031 to rename the config name to `spark.sql.legacy.setCommandRejectsSparkCoreConfs`.

## How was this patch tested?

Existing tests.

Closes #23245 from ueshin/issues/SPARK-26060/rename_config.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-12-07 07:55:54 -08:00
Gengliang Wang 5a140b7844 [SPARK-26263][SQL] Validate partition values with user provided schema
## What changes were proposed in this pull request?

Currently if user provides data schema, partition column values are converted as per it. But if the conversion failed, e.g. converting string to int, the column value is null.

This PR proposes to throw exception in such case, instead of converting into null value silently:
1. These null partition column values doesn't make sense to users in most cases. It is better to show the conversion failure, and then users can adjust the schema or ETL jobs to fix it.
2. There are always exceptions on such conversion failure for non-partition data columns. Partition columns should have the same behavior.

We can reproduce the case above as following:
```
/tmp/testDir
├── p=bar
└── p=foo
```
If we run:
```
val schema = StructType(Seq(StructField("p", IntegerType, false)))
spark.read.schema(schema).csv("/tmp/testDir/").show()
```
We will get:
```
+----+
|   p|
+----+
|null|
|null|
+----+
```

## How was this patch tested?

Unit test

Closes #23215 from gengliangwang/SPARK-26263.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-12-07 11:13:14 +08:00
Marco Gaido 7143e9d722 [SPARK-25829][SQL][FOLLOWUP] Refactor MapConcat in order to check properly the limit size
## What changes were proposed in this pull request?

The PR starts from the [comment](https://github.com/apache/spark/pull/23124#discussion_r236112390) in the main one and it aims at:
 - simplifying the code for `MapConcat`;
 - be more precise in checking the limit size.

## How was this patch tested?

existing tests

Closes #23217 from mgaido91/SPARK-25829_followup.

Authored-by: Marco Gaido <marcogaido91@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-12-05 09:12:24 +08:00
Marco Gaido 556d83e0d8
[SPARK-26233][SQL] CheckOverflow when encoding a decimal value
## What changes were proposed in this pull request?

When we encode a Decimal from external source we don't check for overflow. That method is useful not only in order to enforce that we can represent the correct value in the specified range, but it also changes the underlying data to the right precision/scale. Since in our code generation we assume that a decimal has exactly the same precision and scale of its data type, missing to enforce it can lead to corrupted output/results when there are subsequent transformations.

## How was this patch tested?

added UT

Closes #23210 from mgaido91/SPARK-26233.

Authored-by: Marco Gaido <marcogaido91@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-12-04 10:33:27 -08:00
Maxim Gekk f982ca07e8 [SPARK-26178][SQL] Use java.time API for parsing timestamps and dates from CSV
## What changes were proposed in this pull request?

In the PR, I propose to use **java.time API** for parsing timestamps and dates from CSV content with microseconds precision. The SQL config `spark.sql.legacy.timeParser.enabled` allow to switch back to previous behaviour with using `java.text.SimpleDateFormat`/`FastDateFormat` for parsing/generating timestamps/dates.

## How was this patch tested?

It was tested by `UnivocityParserSuite`, `CsvExpressionsSuite`, `CsvFunctionsSuite` and `CsvSuite`.

Closes #23150 from MaxGekk/time-parser.

Lead-authored-by: Maxim Gekk <max.gekk@gmail.com>
Co-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-12-04 08:36:33 -06:00
Takeshi Yamamuro 2612848422 [SPARK-25374][SQL] SafeProjection supports fallback to an interpreted mode
## What changes were proposed in this pull request?
In SPARK-23711, we have implemented the expression fallback logic to an interpreted mode. So, this pr fixed code to support the same fallback mode in `SafeProjection` based on `CodeGeneratorWithInterpretedFallback`.

## How was this patch tested?
Add tests in `CodeGeneratorWithInterpretedFallbackSuite` and `UnsafeRowConverterSuite`.

Closes #22468 from maropu/SPARK-25374-3.

Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-12-04 20:20:29 +08:00
Dilip Biswal b4dea313c4 [SPARK-25573] Combine resolveExpression and resolve in the Analyzer
## What changes were proposed in this pull request?
Currently in the Analyzer, we have two methods 1) Resolve 2)ResolveExpressions that are called at different code paths to resolve attributes, column ordinal and extract value expressions. ~~In this PR, we combine the two into one method to make sure, there is only one method that is tasked with resolving the attributes.~~
Update the description of the methods and use better names to make it easier to know when to make use of one method vs the other.

## How was this patch tested?
Existing tests.

Closes #22899 from dilipbiswal/SPARK-25573-final.

Authored-by: Dilip Biswal <dbiswal@us.ibm.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-12-03 23:00:02 -08:00
Takeshi Yamamuro 04046e5432 [SPARK-25498][SQL] InterpretedMutableProjection should handle UnsafeRow
## What changes were proposed in this pull request?
Since `AggregationIterator` uses `MutableProjection` for `UnsafeRow`, `InterpretedMutableProjection` needs to handle `UnsafeRow` as buffer internally for fixed-length types only.

## How was this patch tested?
Run 'SQLQueryTestSuite' with the interpreted mode.

Closes #22512 from maropu/InterpreterTest.

Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-12-04 00:05:15 +08:00
Daoyuan Wang 8534d753ec [SPARK-26181][SQL] the hasMinMaxStats method of ColumnStatsMap is not correct
## What changes were proposed in this pull request?

For now the `hasMinMaxStats` will return the same as `hasCountStats`, which is obviously not as expected.

## How was this patch tested?

Existing tests.

Closes #23152 from adrian-wang/minmaxstats.

Authored-by: Daoyuan Wang <me@daoyuan.wang>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-12-03 23:54:26 +08:00
Maxim Gekk 11e5f1bcd4 [SPARK-26151][SQL] Return partial results for bad CSV records
## What changes were proposed in this pull request?

In the PR, I propose to change behaviour of `UnivocityParser` and `FailureSafeParser`, and return all fields that were parsed and converted to expected types successfully instead of just returning a row with all `null`s for a bad input in the `PERMISSIVE` mode. For example, for CSV line `0,2013-111-11 12:13:14` and DDL schema `a int, b timestamp`, new result is `Row(0, null)`.

## How was this patch tested?

It was checked by existing tests from `CsvSuite` and `CsvFunctionsSuite`.

Closes #23120 from MaxGekk/failuresafe-partial-result.

Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-12-03 18:25:38 +08:00
Yuming Wang 676bbb2446 [SPARK-26198][SQL] Fix Metadata serialize null values throw NPE
## What changes were proposed in this pull request?
How to reproduce this issue:
```scala
scala> val meta = new org.apache.spark.sql.types.MetadataBuilder().putNull("key").build().json
java.lang.NullPointerException
  at org.apache.spark.sql.types.Metadata$.org$apache$spark$sql$types$Metadata$$toJsonValue(Metadata.scala:196)
  at org.apache.spark.sql.types.Metadata$$anonfun$1.apply(Metadata.scala:180)
```

This pr fix `NullPointerException` when `Metadata` serialize `null` values.

## How was this patch tested?

unit tests

Closes #23164 from wangyum/SPARK-26198.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-12-02 08:52:01 -06:00
Koert Kuipers c7d95ccedf [SPARK-26208][SQL] add headers to empty csv files when header=true
## What changes were proposed in this pull request?

Add headers to empty csv files when header=true, because otherwise these files are invalid when reading.

## How was this patch tested?

Added test for roundtrip of empty dataframe to csv file with headers and back in CSVSuite

Please review http://spark.apache.org/contributing.html before opening a pull request.

Closes #23173 from koertkuipers/feat-empty-csv-with-header.

Authored-by: Koert Kuipers <koert@tresata.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2018-12-02 17:38:25 +08:00
lichaoqun 031bd80e4f [SPARK-26195][SQL] Correct exception messages in some classes
## What changes were proposed in this pull request?

UnsupportedOperationException messages are not the same with method name.This PR correct these messages.

## How was this patch tested?
NA

Closes #23154 from lcqzte10192193/wid-lcq-1127.

Authored-by: lichaoqun <li.chaoqun@zte.com.cn>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-12-02 10:55:17 +08:00
Takuya UESHIN 17fdca7c1b [SPARK-26211][SQL][TEST][FOLLOW-UP] Combine test cases for In and InSet.
## What changes were proposed in this pull request?

This is a follow pr of #23176.

`In` and `InSet` are semantically equal, so the tests for `In` should pass with `InSet`, and vice versa.
This combines those test cases.

## How was this patch tested?

The combined tests and existing tests.

Closes #23187 from ueshin/issues/SPARK-26211/in_inset_tests.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-12-02 10:22:22 +08:00
liuxian 60e4239a1e [MINOR][DOC] Correct some document description errors
## What changes were proposed in this pull request?

Correct some document description errors.

## How was this patch tested?
N/A

Closes #23162 from 10110346/docerror.

Authored-by: liuxian <liu.xian3@zte.com.cn>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-12-01 07:11:31 -06:00
Reynold Xin 36edbac1c8 [SPARK-26226][SQL] Update query tracker to report timeline for phases
## What changes were proposed in this pull request?
This patch changes the query plan tracker added earlier to report phase timeline, rather than just a duration for each phase. This way, we can easily find time that's unaccounted for.

## How was this patch tested?
Updated test cases to reflect that.

Closes #23183 from rxin/SPARK-26226.

Authored-by: Reynold Xin <rxin@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2018-11-30 14:23:18 -08:00
Takuya UESHIN 8edb64c1b9 [SPARK-26060][SQL] Track SparkConf entries and make SET command reject such entries.
## What changes were proposed in this pull request?

Currently the `SET` command works without any warnings even if the specified key is for `SparkConf` entries and it has no effect because the command does not update `SparkConf`, but the behavior might confuse users. We should track `SparkConf` entries and make the command reject for such entries.

## How was this patch tested?

Added a test and existing tests.

Closes #23031 from ueshin/issues/SPARK-26060/set_command.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-30 11:56:25 +08:00
Maxim Gekk f97326bcdb [SPARK-25977][SQL] Parsing decimals from CSV using locale
## What changes were proposed in this pull request?

In the PR, I propose using of the locale option to parse decimals from CSV input. After the changes, `UnivocityParser` converts input string to `BigDecimal` and to Spark's Decimal by using `java.text.DecimalFormat`.

## How was this patch tested?

Added a test for the `en-US`, `ko-KR`, `ru-RU`, `de-DE` locales.

Closes #22979 from MaxGekk/decimal-parsing-locale.

Lead-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Co-authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-11-30 08:27:55 +08:00
Takuya UESHIN b9b68a6dc7 [SPARK-26211][SQL] Fix InSet for binary, and struct and array with null.
## What changes were proposed in this pull request?

Currently `InSet` doesn't work properly for binary type, or struct and array type with null value in the set.
Because, as for binary type, the `HashSet` doesn't work properly for `Array[Byte]`, and as for struct and array type with null value in the set, the `ordering` will throw a `NPE`.

## How was this patch tested?

Added a few tests.

Closes #23176 from ueshin/issues/SPARK-26211/inset.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-29 22:37:02 +08:00
Maxim Gekk 7a83d71403 [SPARK-26163][SQL] Parsing decimals from JSON using locale
## What changes were proposed in this pull request?

In the PR, I propose using of the locale option to parse (and infer) decimals from JSON input. After the changes, `JacksonParser` converts input string to `BigDecimal` and to Spark's Decimal by using `java.text.DecimalFormat`. New behaviour can be switched off via SQL config `spark.sql.legacy.decimalParsing.enabled`.

## How was this patch tested?

Added 2 tests to `JsonExpressionsSuite` for the `en-US`, `ko-KR`, `ru-RU`, `de-DE` locales:
- Inferring decimal type using locale from JSON field values
- Converting JSON field values to specified decimal type using the locales.

Closes #23132 from MaxGekk/json-decimal-parsing-locale.

Lead-authored-by: Maxim Gekk <max.gekk@gmail.com>
Co-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-29 22:15:12 +08:00
Wenchen Fan fa0d4bf699 [SPARK-25829][SQL] remove duplicated map keys with last wins policy
## What changes were proposed in this pull request?

Currently duplicated map keys are not handled consistently. For example, map look up respects the duplicated key appears first, `Dataset.collect` only keeps the duplicated key appears last, `MapKeys` returns duplicated keys, etc.

This PR proposes to remove duplicated map keys with last wins policy, to follow Java/Scala and Presto. It only applies to built-in functions, as users can create map with duplicated map keys via private APIs anyway.

updated functions: `CreateMap`, `MapFromArrays`, `MapFromEntries`, `StringToMap`, `MapConcat`, `TransformKeys`.

For other places:
1. data source v1 doesn't have this problem, as users need to provide a java/scala map, which can't have duplicated keys.
2. data source v2 may have this problem. I've added a note to `ArrayBasedMapData` to ask the caller to take care of duplicated keys. In the future we should enforce it in the stable data APIs for data source v2.
3. UDF doesn't have this problem, as users need to provide a java/scala map. Same as data source v1.
4. file format. I checked all of them and only parquet does not enforce it. For backward compatibility reasons I change nothing but leave a note saying that the behavior will be undefined if users write map with duplicated keys to parquet files. Maybe we can add a config and fail by default if parquet files have map with duplicated keys. This can be done in followup.

## How was this patch tested?

updated tests and new tests

Closes #23124 from cloud-fan/map.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-28 23:42:13 +08:00
Wenchen Fan affe80958d [SPARK-26147][SQL] only pull out unevaluable python udf from join condition
## What changes were proposed in this pull request?

https://github.com/apache/spark/pull/22326 made a mistake that, not all python UDFs are unevaluable in join condition. Only python UDFs that refer to attributes from both join side are unevaluable.

This PR fixes this mistake.

## How was this patch tested?

a new test

Closes #23153 from cloud-fan/join.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-28 20:38:42 +08:00
Wenchen Fan 09a91d98bd [SPARK-26021][SQL][FOLLOWUP] add test for special floating point values
## What changes were proposed in this pull request?

a followup of https://github.com/apache/spark/pull/23043 . Add a test to show the minor behavior change introduced by #23043 , and add migration guide.

## How was this patch tested?

a new test

Closes #23141 from cloud-fan/follow.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-28 16:21:42 +08:00
caoxuewen 65244b1d79 [SPARK-23356][SQL][TEST] add new test cases for a + 1,a + b and Rand in SetOperationSuite
## What changes were proposed in this pull request?

The purpose of this PR is supplement new test cases for a + 1,a + b and Rand in SetOperationSuite.
It comes from the comment of closed PR:#20541, thanks.

## How was this patch tested?

add new test cases

Closes #23138 from heary-cao/UnionPushTestCases.

Authored-by: caoxuewen <cao.xuewen@zte.com.cn>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-27 20:10:34 +08:00
gatorsmile 85383d29ed
[SPARK-25860][SPARK-26107][FOLLOW-UP] Rule ReplaceNullWithFalseInPredicate
## What changes were proposed in this pull request?

Based on https://github.com/apache/spark/pull/22857 and https://github.com/apache/spark/pull/23079, this PR did a few updates

- Limit the data types of NULL to Boolean.
- Limit the input data type of replaceNullWithFalse to Boolean; throw an exception in the testing mode.
- Create a new file for the rule ReplaceNullWithFalseInPredicate
- Update the description of this rule.

## How was this patch tested?
Added a test case

Closes #23139 from gatorsmile/followupSpark-25860.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
2018-11-27 04:51:32 +00:00
Liang-Chi Hsieh 1c487f7d14 [SPARK-24762][SQL][FOLLOWUP] Enable Option of Product encoders
## What changes were proposed in this pull request?

This is follow-up of #21732. This patch inlines `isOptionType` method.

## How was this patch tested?

Existing tests.

Closes #23143 from viirya/SPARK-24762-followup.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-27 12:13:48 +08:00
gatorsmile 6bb60b30fd [SPARK-26168][SQL] Update the code comments in Expression and Aggregate
## What changes were proposed in this pull request?
This PR is to improve the code comments to document some common traits and traps about the expression.

## How was this patch tested?
N/A

Closes #23135 from gatorsmile/addcomments.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-26 15:51:28 +08:00
gatorsmile 6ab8485da2 [SPARK-26169] Create DataFrameSetOperationsSuite
## What changes were proposed in this pull request?

Create a new suite DataFrameSetOperationsSuite for the test cases of DataFrame/Dataset's set operations.

Also, add test cases of NULL handling for Array Except and Array Intersect.

## How was this patch tested?
N/A

Closes #23137 from gatorsmile/setOpsTest.

Authored-by: gatorsmile <gatorsmile@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-26 15:47:04 +08:00
Liang-Chi Hsieh 6339c8c2c6 [SPARK-24762][SQL] Enable Option of Product encoders
## What changes were proposed in this pull request?

SparkSQL doesn't support to encode `Option[Product]` as a top-level row now, because in SparkSQL entire top-level row can't be null.

However for use cases like Aggregator, it is reasonable to use `Option[Product]` as buffer and output column types. Due to above limitation, we don't do it for now.

This patch proposes to encode `Option[Product]` at top-level as single struct column. So we can work around the issue that entire top-level row can't be null.

To summarize encoding of `Product` and `Option[Product]`.

For `Product`, 1. at root level, the schema is all fields are flatten it into multiple columns. The `Product ` can't be null, otherwise it throws an exception.

```scala
val df = Seq((1 -> "a"), (2 -> "b")).toDF()
df.printSchema()

root
 |-- _1: integer (nullable = false)
 |-- _2: string (nullable = true)
```

2. At non-root level, `Product` is a struct type column.

```scala
val df = Seq((1, (1 -> "a")), (2, (2 -> "b")), (3, null)).toDF()
df.printSchema()

root
 |-- _1: integer (nullable = false)
 |-- _2: struct (nullable = true)
 |    |-- _1: integer (nullable = false)
 |    |-- _2: string (nullable = true)
```

For `Option[Product]`, 1. it was not supported at root level. After this change, it is a struct type column.

```scala
val df = Seq(Some(1 -> "a"), Some(2 -> "b"), None).toDF()
df.printSchema

root
 |-- value: struct (nullable = true)
 |    |-- _1: integer (nullable = false)
 |    |-- _2: string (nullable = true)
```

2. At non-root level, it is also a struct type column.

```scala
val df = Seq((1, Some(1 -> "a")), (2, Some(2 -> "b")), (3, None)).toDF()
df.printSchema

root
 |-- _1: integer (nullable = false)
 |-- _2: struct (nullable = true)
 |    |-- _1: integer (nullable = false)
 |    |-- _2: string (nullable = true)
```

3. For use case like Aggregator, it was not supported too. After this change, we support to use `Option[Product]` as buffer/output column type.

```scala
val df = Seq(
    OptionBooleanIntData("bob", Some((true, 1))),
    OptionBooleanIntData("bob", Some((false, 2))),
    OptionBooleanIntData("bob", None)).toDF()

val group = df
    .groupBy("name")
    .agg(OptionBooleanIntAggregator("isGood").toColumn.alias("isGood"))
group.printSchema

root
 |-- name: string (nullable = true)
 |-- isGood: struct (nullable = true)
 |    |-- _1: boolean (nullable = false)
 |    |-- _2: integer (nullable = false)
```

The buffer and output type of `OptionBooleanIntAggregator` is both `Option[(Boolean, Int)`.

## How was this patch tested?

Added test.

Closes #21732 from viirya/SPARK-24762.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-26 11:13:28 +08:00
Katrin Leinweber c5daccb1da [MINOR] Update all DOI links to preferred resolver
## What changes were proposed in this pull request?

The DOI foundation recommends [this new resolver](https://www.doi.org/doi_handbook/3_Resolution.html#3.8). Accordingly, this PR re`sed`s all static DOI links ;-)

## How was this patch tested?

It wasn't, since it seems as safe as a "[typo fix](https://spark.apache.org/contributing.html)".

In case any of the files is included from other projects, and should be updated there, please let me know.

Closes #23129 from katrinleinweber/resolve-DOIs-securely.

Authored-by: Katrin Leinweber <9948149+katrinleinweber@users.noreply.github.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-11-25 17:43:55 -06:00
Juliusz Sompolski ecb785f4e4 [SPARK-26038] Decimal toScalaBigInt/toJavaBigInteger for decimals not fitting in long
## What changes were proposed in this pull request?

Fix Decimal `toScalaBigInt` and `toJavaBigInteger` used to only work for decimals not fitting long.

## How was this patch tested?

Added test to DecimalSuite.

Closes #23022 from juliuszsompolski/SPARK-26038.

Authored-by: Juliusz Sompolski <julek@databricks.com>
Signed-off-by: Herman van Hovell <hvanhovell@databricks.com>
2018-11-23 21:08:06 +01:00
Maxim Gekk 8e8d1177e6 [SPARK-26108][SQL] Support custom lineSep in CSV datasource
## What changes were proposed in this pull request?

In the PR,  I propose new options for CSV datasource - `lineSep` similar to Text and JSON datasource. The option allows to specify custom line separator of maximum length of 2 characters (because of a restriction in `uniVocity` parser). New option can be used in reading and writing CSV files.

## How was this patch tested?

Added a few tests with custom `lineSep` for enabled/disabled `multiLine` in read as well as tests in write. Also I added roundtrip tests.

Closes #23080 from MaxGekk/csv-line-sep.

Lead-authored-by: Maxim Gekk <max.gekk@gmail.com>
Co-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-11-24 00:50:20 +09:00
caoxuewen 466d011d35 [SPARK-26117][CORE][SQL] use SparkOutOfMemoryError instead of OutOfMemoryError when catch exception
## What changes were proposed in this pull request?

the pr #20014 which introduced `SparkOutOfMemoryError` to avoid killing the entire executor when an `OutOfMemoryError `is thrown.
so apply for memory using `MemoryConsumer. allocatePage `when  catch exception, use `SparkOutOfMemoryError `instead of `OutOfMemoryError`

## How was this patch tested?
N / A

Closes #23084 from heary-cao/SparkOutOfMemoryError.

Authored-by: caoxuewen <cao.xuewen@zte.com.cn>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-23 21:12:25 +08:00
Alon Doron 0ec7b99ea2 [SPARK-26021][SQL] replace minus zero with zero in Platform.putDouble/Float
GROUP BY treats -0.0 and 0.0 as different values which is unlike hive's behavior.
In addition current behavior with codegen is unpredictable (see example in JIRA ticket).

## What changes were proposed in this pull request?

In Platform.putDouble/Float() checking if the value is -0.0, and if so replacing with 0.0.
This is used by UnsafeRow so it won't have -0.0 values.

## How was this patch tested?

Added tests

Closes #23043 from adoron/adoron-spark-26021-replace-minus-zero-with-zero.

Authored-by: Alon Doron <adoron@palantir.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-23 08:55:00 +08:00
Reynold Xin ab00533490
[SPARK-26129][SQL] edge behavior for QueryPlanningTracker.topRulesByTime - followup patch
## What changes were proposed in this pull request?
This is an addendum patch for SPARK-26129 that defines the edge case behavior for QueryPlanningTracker.topRulesByTime.

## How was this patch tested?
Added unit tests for each behavior.

Closes #23110 from rxin/SPARK-26129-1.

Authored-by: Reynold Xin <rxin@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-11-22 02:27:06 -08:00
Maxim Gekk 8d54bf79f2 [SPARK-26099][SQL] Verification of the corrupt column in from_csv/from_json
## What changes were proposed in this pull request?

The corrupt column specified via JSON/CSV option *columnNameOfCorruptRecord* must have the `string` type and be `nullable`. This has been already checked in `DataFrameReader`.`csv`/`json` and in `Json`/`CsvFileFormat` but not in `from_json`/`from_csv`. The PR adds such checks inside functions as well.

## How was this patch tested?

Added tests to `Json`/`CsvExpressionSuite` for checking type of the corrupt column. They don't check the `nullable` property because `schema` is forcibly casted to nullable.

Closes #23070 from MaxGekk/verify-corrupt-column-csv-json.

Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-11-22 10:57:19 +08:00
Liang-Chi Hsieh ab2eafb3cd [SPARK-26085][SQL] Key attribute of non-struct type under typed aggregation should be named as "key" too
## What changes were proposed in this pull request?

When doing typed aggregation on a Dataset, for struct key type, the key attribute is named as "key". But for non-struct type, the key attribute is named as "value". This key attribute should also be named as "key" for non-struct type.

## How was this patch tested?

Added test.

Closes #23054 from viirya/SPARK-26085.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-22 10:50:01 +08:00
Maxim Gekk 38628dd1b8 [SPARK-25935][SQL] Prevent null rows from JSON parser
## What changes were proposed in this pull request?

An input without valid JSON tokens on the root level will be treated as a bad record, and handled according to `mode`. Previously such input was converted to `null`. After the changes, the input is converted to a row with `null`s in the `PERMISSIVE` mode according the schema. This allows to remove a code in the `from_json` function which can produce `null` as result rows.

## How was this patch tested?

It was tested by existing test suites. Some of them I have to modify (`JsonSuite` for example) because previously bad input was just silently ignored. For now such input is handled according to specified `mode`.

Closes #22938 from MaxGekk/json-nulls.

Lead-authored-by: Maxim Gekk <max.gekk@gmail.com>
Co-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-22 09:35:29 +08:00
Maxim Gekk 81550b38e4
[SPARK-26066][SQL] Move truncatedString to sql/catalyst and add spark.sql.debug.maxToStringFields conf
## What changes were proposed in this pull request?

In the PR, I propose:
- new SQL config `spark.sql.debug.maxToStringFields` to control maximum number fields up to which `truncatedString` cuts its input sequences.
- Moving `truncatedString` out of `core` to `sql/catalyst` because it is used only in the `sql/catalyst` packages for restricting number of fields converted to strings from `TreeNode` and expressions of`StructType`.

## How was this patch tested?

Added a test to `QueryExecutionSuite` to check that `spark.sql.debug.maxToStringFields` impacts to behavior of `truncatedString`.

Closes #23039 from MaxGekk/truncated-string-catalyst.

Lead-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Co-authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2018-11-21 11:16:54 -08:00
Reynold Xin 07a700b371 [SPARK-26129][SQL] Instrumentation for per-query planning time
## What changes were proposed in this pull request?
We currently don't have good visibility into query planning time (analysis vs optimization vs physical planning). This patch adds a simple utility to track the runtime of various rules and various planning phases.

## How was this patch tested?
Added unit tests and end-to-end integration tests.

Closes #23096 from rxin/SPARK-26129.

Authored-by: Reynold Xin <rxin@databricks.com>
Signed-off-by: Reynold Xin <rxin@databricks.com>
2018-11-21 16:41:12 +01:00
Drew Robb 6bbdf34bae [SPARK-8288][SQL] ScalaReflection can use companion object constructor
## What changes were proposed in this pull request?

This change fixes a particular scenario where default spark SQL can't encode (thrift) types that are generated by twitter scrooge. These types are a trait that extends `scala.ProductX` with a constructor defined only in a companion object, rather than a actual case class. The actual case class used is child class, but that type is almost never referred to in code. The type has no corresponding constructor symbol and causes an exception. For all other purposes, these classes act just like case classes, so it is unfortunate that spark SQL can't serialize them nicely as it can actual case classes. For an full example of a scrooge codegen class, see https://gist.github.com/anonymous/ba13d4b612396ca72725eaa989900314.

This change catches the case where the type has no constructor but does have an `apply` method on the type's companion object. This allows for thrift types to be serialized/deserialized with implicit encoders the same way as normal case classes. This fix had to be done in three places where the constructor is assumed to be an actual constructor:

1) In serializing, determining the schema for the dataframe relies on inspecting its constructor (`ScalaReflection.constructParams`). Here we fall back to using the companion constructor arguments.
2) In deserializing or evaluating, in the java codegen ( `NewInstance.doGenCode`), the type couldn't be constructed with the new keyword. If there is no constructor, we change the constructor call to try the companion constructor.
3)  In deserializing or evaluating, without codegen, the constructor is directly invoked (`NewInstance.constructor`). This was fixed with scala reflection to get the actual companion apply method.

The return type of `findConstructor` was changed because the companion apply method constructor can't be represented as a `java.lang.reflect.Constructor`.

There might be situations in which this approach would also fail in a new way, but it does at a minimum work for the specific scrooge example and will not impact cases that were already succeeding prior to this change

Note: this fix does not enable using scrooge thrift enums, additional work for this is necessary. With this patch, it seems like you could patch `com.twitter.scrooge.ThriftEnum` to extend `_root_.scala.Product1[Int]` with `def _1 = value` to get spark's implicit encoders to handle enums, but I've yet to use this method myself.

Note: I previously opened a PR for this issue, but only was able to fix case 1) there: https://github.com/apache/spark/pull/18766

## How was this patch tested?

I've fixed all 3 cases and added two tests that use a case class that is similar to scrooge generated one. The test in ScalaReflectionSuite checks 1), and the additional asserting in ObjectExpressionsSuite checks 2) and 3).

Closes #23062 from drewrobb/SPARK-8288.

Authored-by: Drew Robb <drewrobb@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-11-21 09:38:06 -06:00
Maxim Gekk 2df34db586 [SPARK-26122][SQL] Support encoding for multiLine in CSV datasource
## What changes were proposed in this pull request?

In the PR, I propose to pass the CSV option `encoding`/`charset` to `uniVocity` parser to allow parsing CSV files in different encodings when `multiLine` is enabled. The value of the option is passed to the `beginParsing` method of `CSVParser`.

## How was this patch tested?

Added new test to `CSVSuite` for different encodings and enabled/disabled header.

Closes #23091 from MaxGekk/csv-miltiline-encoding.

Authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Signed-off-by: hyukjinkwon <gurwls223@apache.org>
2018-11-21 09:29:22 +08:00
Simeon Simeonov db136d360e [SPARK-26084][SQL] Fixes unresolved AggregateExpression.references exception
## What changes were proposed in this pull request?

This PR fixes an exception in `AggregateExpression.references` called on unresolved expressions. It implements the solution proposed in [SPARK-26084](https://issues.apache.org/jira/browse/SPARK-26084), a minor refactoring that removes the unnecessary dependence on `AttributeSet.toSeq`, which requires expression IDs and, therefore, can only execute successfully for resolved expressions.

The refactored implementation is both simpler and faster, eliminating the conversion of a `Set` to a
`Seq` and back to `Set`.

## How was this patch tested?

Added a new test based on the failing case in [SPARK-26084](https://issues.apache.org/jira/browse/SPARK-26084).

hvanhovell

Closes #23075 from ssimeonov/ss_SPARK-26084.

Authored-by: Simeon Simeonov <sim@fastignite.com>
Signed-off-by: Herman van Hovell <hvanhovell@databricks.com>
2018-11-20 21:29:56 +01:00
Kris Mok a09d5ba886 [SPARK-26107][SQL] Extend ReplaceNullWithFalseInPredicate to support higher-order functions: ArrayExists, ArrayFilter, MapFilter
## What changes were proposed in this pull request?

Extend the `ReplaceNullWithFalse` optimizer rule introduced in SPARK-25860 (https://github.com/apache/spark/pull/22857) to also support optimizing predicates in higher-order functions of `ArrayExists`, `ArrayFilter`, `MapFilter`.

Also rename the rule to `ReplaceNullWithFalseInPredicate` to better reflect its intent.

Example:
```sql
select filter(a, e -> if(e is null, null, true)) as b from (
  select array(null, 1, null, 3) as a)
```
The optimized logical plan:
**Before**:
```
== Optimized Logical Plan ==
Project [filter([null,1,null,3], lambdafunction(if (isnull(lambda e#13)) null else true, lambda e#13, false)) AS b#9]
+- OneRowRelation
```
**After**:
```
== Optimized Logical Plan ==
Project [filter([null,1,null,3], lambdafunction(if (isnull(lambda e#13)) false else true, lambda e#13, false)) AS b#9]
+- OneRowRelation
```

## How was this patch tested?

Added new unit test cases to the `ReplaceNullWithFalseInPredicateSuite` (renamed from `ReplaceNullWithFalseSuite`).

Closes #23079 from rednaxelafx/catalyst-master.

Authored-by: Kris Mok <kris.mok@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-20 09:27:46 +08:00
Sean Owen 32365f8177 [SPARK-26090][CORE][SQL][ML] Resolve most miscellaneous deprecation and build warnings for Spark 3
## What changes were proposed in this pull request?

The build has a lot of deprecation warnings. Some are new in Scala 2.12 and Java 11. We've fixed some, but I wanted to take a pass at fixing lots of easy miscellaneous ones here.

They're too numerous and small to list here; see the pull request. Some highlights:

- `BeanInfo` is deprecated in 2.12, and BeanInfo classes are pretty ancient in Java. Instead, case classes can explicitly declare getters
- Eta expansion of zero-arg methods; foo() becomes () => foo() in many cases
- Floating-point Range is inexact and deprecated, like 0.0 to 100.0 by 1.0
- finalize() is finally deprecated (just needs to be suppressed)
- StageInfo.attempId was deprecated and easiest to remove here

I'm not now going to touch some chunks of deprecation warnings:

- Parquet deprecations
- Hive deprecations (particularly serde2 classes)
- Deprecations in generated code (mostly Thriftserver CLI)
- ProcessingTime deprecations (we may need to revive this class as internal)
- many MLlib deprecations because they concern methods that may be removed anyway
- a few Kinesis deprecations I couldn't figure out
- Mesos get/setRole, which I don't know well
- Kafka/ZK deprecations (e.g. poll())
- Kinesis
- a few other ones that will probably resolve by deleting a deprecated method

## How was this patch tested?

Existing tests, including manual testing with the 2.11 build and Java 11.

Closes #23065 from srowen/SPARK-26090.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-11-19 09:16:42 -06:00
Wenchen Fan 219b037f05 [SPARK-26071][SQL] disallow map as map key
## What changes were proposed in this pull request?

Due to implementation limitation, currently Spark can't compare or do equality check between map types. As a result, map values can't appear in EQUAL or comparison expressions, can't be grouping key, etc.

The more important thing is, map loop up needs to do equality check of the map key, and thus can't support map as map key when looking up values from a map. Thus it's not useful to have map as map key.

This PR proposes to stop users from creating maps using map type as key. The list of expressions that are updated: `CreateMap`, `MapFromArrays`, `MapFromEntries`, `MapConcat`, `TransformKeys`. I manually checked all the places that create `MapType`, and came up with this list.

Note that, maps with map type key still exist, via reading from parquet files, converting from scala/java map, etc. This PR is not to completely forbid map as map key, but to avoid creating it by Spark itself.

Motivation: when I was trying to fix the duplicate key problem, I found it's impossible to do it with map type map key. I think it's reasonable to avoid map type map key for builtin functions.

## How was this patch tested?

updated test

Closes #23045 from cloud-fan/map-key.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-19 22:42:24 +08:00
Takuya UESHIN 48ea64bf5b [SPARK-26112][SQL] Update since versions of new built-in functions.
## What changes were proposed in this pull request?

The following 5 functions were removed from branch-2.4:

- map_entries
- map_filter
- transform_values
- transform_keys
- map_zip_with

We should update the since version to 3.0.0.

## How was this patch tested?

Existing tests.

Closes #23082 from ueshin/issues/SPARK-26112/since.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2018-11-19 22:18:20 +08:00
Sean Owen 630e25e355 [SPARK-26026][BUILD] Published Scaladoc jars missing from Maven Central
## What changes were proposed in this pull request?

This restores scaladoc artifact generation, which got dropped with the Scala 2.12 update. The change looks large, but is almost all due to needing to make the InterfaceStability annotations top-level classes (i.e. `InterfaceStability.Stable` -> `Stable`), unfortunately. A few inner class references had to be qualified too.

Lots of scaladoc warnings now reappear. We can choose to disable generation by default and enable for releases, later.

## How was this patch tested?

N/A; build runs scaladoc now.

Closes #23069 from srowen/SPARK-26026.

Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
2018-11-19 08:06:33 -06:00