Fix the following issues in StandaloneDynamicAllocationSuite:
1. It should not assume master and workers start in order
2. It should not assume master and workers get ready at once
3. It should not assume the application is already registered with master after creating SparkContext
4. It should not access Master.app and idToApp which are not thread safe
The changes includes:
* Use `eventually` to wait until master and workers are ready to fix 1 and 2
* Use `eventually` to wait until the application is registered with master to fix 3
* Use `askWithRetry[MasterStateResponse](RequestMasterState)` to get the application info to fix 4
Author: zsxwing <zsxwing@gmail.com>
Closes#8914 from zsxwing/fix-StandaloneDynamicAllocationSuite.
jira: https://issues.apache.org/jira/browse/SPARK-10670
In the Markdown docs for the spark.ml Programming Guide, we have code examples with codetabs for each language. We should link to each language's API docs within the corresponding codetab, but we are inconsistent about this. For an example of what we want to do, see the "Word2Vec" section in 64743870f2/docs/ml-features.md
This JIRA is just for spark.ml, not spark.mllib
Author: Yuhao Yang <hhbyyh@gmail.com>
Closes#8901 from hhbyyh/docAPI.
In the course of https://issues.apache.org/jira/browse/LEGAL-226 it came to light that the guidance at http://www.apache.org/dev/licensing-howto.html#permissive-deps means that permissively-licensed dependencies has a different interpretation than we (er, I) had been operating under. "pointer ... to the license within the source tree" specifically means a copy of the license within Spark's distribution, whereas at the moment, Spark's LICENSE has a pointer to the project's license in the other project's source tree.
The remedy is simply to inline all such license references (i.e. BSD/MIT licenses) or include their text in "licenses" subdirectory and point to that.
Along the way, we can also treat other BSD/MIT licenses, whose text has been inlined into LICENSE, in the same way.
The LICENSE file can continue to provide a helpful list of BSD/MIT licensed projects and a pointer to their sites. This would be over and above including license text in the distro, which is the essential thing.
Author: Sean Owen <sowen@cloudera.com>
Closes#8919 from srowen/SPARK-10833.
The UTF8String may come from UnsafeRow, then underline buffer of it is not copied, so we should clone it in order to hold it in Stats.
cc yhuai
Author: Davies Liu <davies@databricks.com>
Closes#8929 from davies/pushdown_string.
This bug is introduced in [SPARK-9092](https://issues.apache.org/jira/browse/SPARK-9092), `targetExecutorNumber` should use `minExecutors` if `initialExecutors` is not set. Using 0 instead will meet the problem as mentioned in [SPARK-10790](https://issues.apache.org/jira/browse/SPARK-10790).
Also consolidate and simplify some similar code snippets to keep the consistent semantics.
Author: jerryshao <sshao@hortonworks.com>
Closes#8910 from jerryshao/SPARK-10790.
While this is likely not a huge issue for real production systems, for test systems which may setup a Spark Context and tear it down and stand up a Spark Context with a different master (e.g. some local mode & some yarn mode) tests this cane be an issue. Discovered during work on spark-testing-base on Spark 1.4.1, but seems like the logic that triggers it is present in master (see SparkHadoopUtil object). A valid work around for users encountering this issue is to fork a different JVM, however this can be heavy weight.
```
[info] SampleMiniClusterTest:
[info] Exception encountered when attempting to run a suite with class name: com.holdenkarau.spark.testing.SampleMiniClusterTest *** ABORTED ***
[info] java.lang.ClassCastException: org.apache.spark.deploy.SparkHadoopUtil cannot be cast to org.apache.spark.deploy.yarn.YarnSparkHadoopUtil
[info] at org.apache.spark.deploy.yarn.YarnSparkHadoopUtil$.get(YarnSparkHadoopUtil.scala:163)
[info] at org.apache.spark.deploy.yarn.Client.prepareLocalResources(Client.scala:257)
[info] at org.apache.spark.deploy.yarn.Client.createContainerLaunchContext(Client.scala:561)
[info] at org.apache.spark.deploy.yarn.Client.submitApplication(Client.scala:115)
[info] at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend.start(YarnClientSchedulerBackend.scala:57)
[info] at org.apache.spark.scheduler.TaskSchedulerImpl.start(TaskSchedulerImpl.scala:141)
[info] at org.apache.spark.SparkContext.<init>(SparkContext.scala:497)
[info] at com.holdenkarau.spark.testing.SharedMiniCluster$class.setup(SharedMiniCluster.scala:186)
[info] at com.holdenkarau.spark.testing.SampleMiniClusterTest.setup(SampleMiniClusterTest.scala:26)
[info] at com.holdenkarau.spark.testing.SharedMiniCluster$class.beforeAll(SharedMiniCluster.scala:103)
```
Author: Holden Karau <holden@pigscanfly.ca>
Closes#8911 from holdenk/SPARK-10812-spark-hadoop-util-support-switching-to-yarn.
https://issues.apache.org/jira/browse/SPARK-10741
I choose the second approach: do not change output exprIds when convert MetastoreRelation to LogicalRelation
Author: Wenchen Fan <cloud0fan@163.com>
Closes#8889 from cloud-fan/hot-bug.
I implemented toString for AssociationRules.Rule, format like `[x, y] => {z}: 1.0`
Author: y-shimizu <y.shimizu0429@gmail.com>
Closes#8904 from y-shimizu/master.
When refactoring SQL options from plain strings to the strongly typed `SQLConfEntry`, `spark.sql.hive.version` wasn't migrated, and doesn't show up in the result of `SET -v`, as `SET -v` only shows public `SQLConfEntry` instances. This affects compatibility with Simba ODBC driver.
This PR migrates this SQL option as a `SQLConfEntry` to fix this issue.
Author: Cheng Lian <lian@databricks.com>
Closes#8925 from liancheng/spark-10845/hive-version-conf.
Hi everyone,
Since the family argument is required for the glm function, the execution of:
model <- glm(Sepal_Length ~ Sepal_Width, df)
is failing.
I've fixed the documentation by adding the family argument and also added the summay(model) which will show the coefficients for the model.
Thanks,
Narine
Author: Narine Kokhlikyan <narine.kokhlikyan@gmail.com>
Closes#8870 from NarineK/sparkrml.
This integrates the Interaction feature transformer with SparkR R formula support (i.e. support `:`).
To generate reasonable ML attribute names for feature interactions, it was necessary to add the ability to read attribute the original attribute names back from `StructField`, and also to specify custom group prefixes in `VectorAssembler`. This also has the side-benefit of cleaning up the double-underscores in the attributes generated for non-interaction terms.
mengxr
Author: Eric Liang <ekl@databricks.com>
Closes#8830 from ericl/interaction-2.
This makes two changes:
- Allow reduce tasks to fetch multiple map output partitions -- this is a pretty small change to HashShuffleFetcher
- Move shuffle locality computation out of DAGScheduler and into ShuffledRDD / MapOutputTracker; this was needed because the code in DAGScheduler wouldn't work for RDDs that fetch multiple map output partitions from each reduce task
I also added an AdaptiveSchedulingSuite that creates RDDs depending on multiple map output partitions.
Author: Matei Zaharia <matei@databricks.com>
Closes#8844 from mateiz/spark-9852.
The DiskBlockObjectWriter constructor took a BlockId parameter but never used it. As part of some general cleanup in these interfaces, this patch refactors its constructor to eliminate this parameter.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8871 from JoshRosen/disk-block-object-writer-blockid-cleanup.
JIRA: https://issues.apache.org/jira/browse/SPARK-10705
As described in the JIRA ticket, `DataFrame.toJSON` uses `DataFrame.mapPartitions`, which converts internal rows to external rows. We should use `queryExecution.toRdd.mapPartitions` that directly uses internal rows for better performance.
Author: Liang-Chi Hsieh <viirya@appier.com>
Closes#8865 from viirya/df-tojson-internalrow.
As introduced in https://issues.apache.org/jira/browse/SPARK-10630 we now have an easier way to create dataframes from local Java lists. Lets update the tests to use those.
Author: Holden Karau <holden@pigscanfly.ca>
Closes#8886 from holdenk/SPARK-10763-update-java-mllib-ml-tests-to-use-simplified-dataframe-construction.
Slightly modified version of #8818, all credit goes to zsxwing
Author: zsxwing <zsxwing@gmail.com>
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#8892 from tdas/SPARK-10692.
This patch reverts most of the changes in a previous fix#8827.
The real cause of the issue is that in `TungstenAggregate`'s prepare method we only reserve 1 page, but later when we switch to sort-based aggregation we try to acquire 1 page AND a pointer array. The longer-term fix should be to reserve also the pointer array, but for now ***we will simply not track the pointer array***. (Note that elsewhere we already don't track the pointer array, e.g. [here](a18208047f/sql/core/src/main/java/org/apache/spark/sql/execution/UnsafeKVExternalSorter.java (L88)))
Note: This patch reuses the unit test added in #8827 so it doesn't show up in the diff.
Author: Andrew Or <andrew@databricks.com>
Closes#8888 from andrewor14/dont-track-pointer-array.
Python DataFrame.head/take now requires scanning all the partitions. This pull request changes them to delegate the actual implementation to Scala DataFrame (by calling DataFrame.take).
This is more of a hack for fixing this issue in 1.5.1. A more proper fix is to change executeCollect and executeTake to return InternalRow rather than Row, and thus eliminate the extra round-trip conversion.
Author: Reynold Xin <rxin@databricks.com>
Closes#8876 from rxin/SPARK-10731.
Currently use can set ```checkpointInterval``` to specify how often should the cache be check-pointed. But we also need the function that users can disable it. This PR supports that users can disable checkpoint if user setting ```checkpointInterval = -1```.
We also add documents for GBT ```cacheNodeIds``` to make users can understand more clearly about checkpoint.
Author: Yanbo Liang <ybliang8@gmail.com>
Closes#8820 from yanboliang/spark-10699.
By default ```quantilesCol``` should be empty. If ```quantileProbabilities``` is set, we should append quantiles as a new column (of type Vector).
Author: Yanbo Liang <ybliang8@gmail.com>
Closes#8836 from yanboliang/spark-10686.
All prediction models should store `numFeatures` indicating the number of features the model was trained on. Default value of -1 added for backwards compatibility.
Author: sethah <seth.hendrickson16@gmail.com>
Closes#8675 from sethah/SPARK-9715.
This patch attempts to fix an issue where Spark SQL's UnsafeRowSerializer was incompatible with the `tungsten-sort` ShuffleManager.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8873 from JoshRosen/SPARK-10403.
Fixed the following failure in https://amplab.cs.berkeley.edu/jenkins/job/NewSparkPullRequestBuilder/1787/testReport/junit/org.apache.spark.streaming/CheckpointSuite/recovery_maintains_rate_controller/
```
sbt.ForkMain$ForkError: The code passed to eventually never returned normally. Attempted 660 times over 10.000044392000001 seconds. Last failure message: 9223372036854775807 did not equal 200.
at org.scalatest.concurrent.Eventually$class.tryTryAgain$1(Eventually.scala:420)
at org.scalatest.concurrent.Eventually$class.eventually(Eventually.scala:438)
at org.scalatest.concurrent.Eventually$.eventually(Eventually.scala:478)
at org.scalatest.concurrent.Eventually$class.eventually(Eventually.scala:336)
at org.scalatest.concurrent.Eventually$.eventually(Eventually.scala:478)
at org.apache.spark.streaming.CheckpointSuite$$anonfun$15.apply$mcV$sp(CheckpointSuite.scala:413)
at org.apache.spark.streaming.CheckpointSuite$$anonfun$15.apply(CheckpointSuite.scala:396)
at org.apache.spark.streaming.CheckpointSuite$$anonfun$15.apply(CheckpointSuite.scala:396)
at org.scalatest.Transformer$$anonfun$apply$1.apply$mcV$sp(Transformer.scala:22)
at org.scalatest.OutcomeOf$class.outcomeOf(OutcomeOf.scala:85)
at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
at org.scalatest.Transformer.apply(Transformer.scala:22)
```
In this test, it calls `advanceTimeWithRealDelay(ssc, 2)` to run two batch jobs. However, one race condition is these two jobs can finish before the receiver is registered. Then `UpdateRateLimit` won't be sent to the receiver and `getDefaultBlockGeneratorRateLimit` cannot be updated.
Here are the logs related to this issue:
```
15/09/22 19:28:26.154 pool-1-thread-1-ScalaTest-running-CheckpointSuite INFO CheckpointSuite: Manual clock before advancing = 2500
15/09/22 19:28:26.869 JobScheduler INFO JobScheduler: Finished job streaming job 3000 ms.0 from job set of time 3000 ms
15/09/22 19:28:26.869 JobScheduler INFO JobScheduler: Total delay: 1442975303.869 s for time 3000 ms (execution: 0.711 s)
15/09/22 19:28:26.873 JobScheduler INFO JobScheduler: Finished job streaming job 3500 ms.0 from job set of time 3500 ms
15/09/22 19:28:26.873 JobScheduler INFO JobScheduler: Total delay: 1442975303.373 s for time 3500 ms (execution: 0.004 s)
15/09/22 19:28:26.879 sparkDriver-akka.actor.default-dispatcher-3 INFO ReceiverTracker: Registered receiver for stream 0 from localhost:57749
15/09/22 19:28:27.154 pool-1-thread-1-ScalaTest-running-CheckpointSuite INFO CheckpointSuite: Manual clock after advancing = 3500
```
`advanceTimeWithRealDelay(ssc, 2)` triggered job 3000ms and 3500ms but the receiver was registered after job 3000ms and 3500ms finished.
So we should make sure the receiver online before running `advanceTimeWithRealDelay(ssc, 2)`.
Author: zsxwing <zsxwing@gmail.com>
Closes#8877 from zsxwing/SPARK-10769.
`blockIntervalTimer.stop(interruptTimer = false)` doesn't guarantee calling `updateCurrentBuffer`. So it's possible that `blockIntervalTimer` will exit when `updateCurrentBuffer` is not empty. Then the data in `currentBuffer` will be lost.
To reproduce it, you can add `Thread.sleep(200)` in this line (69c9c17716/streaming/src/main/scala/org/apache/spark/streaming/util/RecurringTimer.scala (L100)) and run `StreamingContexSuite`.
I cannot write a unit test to reproduce it because I cannot find an approach to force `RecurringTimer` suspend at this line for a few milliseconds.
There was a failure in Jenkins here: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/41455/console
This PR updates RecurringTimer to make sure `stop(interruptTimer = false)` will call `callback` at least once after the `stop` method is called.
Author: zsxwing <zsxwing@gmail.com>
Closes#8417 from zsxwing/SPARK-10224.
The Scala example under the "Example: Pipeline" heading in this
document initializes the "test" variable to a DataFrame. Because test
is already a DF, there is not need to call test.toDF as the example
does in a subsequent line: model.transform(test.toDF). So, I removed
the extraneous toDF invocation.
Author: Matt Hagen <anonz3000@gmail.com>
Closes#8875 from hagenhaus/SPARK-10663.
**Please attribute this PR to `Zhichao Li <zhichao.liintel.com>`.**
This PR is based on PR #8476 authored by zhichao-li. It fixes SPARK-10310 by adding field delimiter SerDe property to the default `LazySimpleSerDe`, and enabling default record reader/writer classes.
Currently, we only support `LazySimpleSerDe`, used together with `TextRecordReader` and `TextRecordWriter`, and don't support customizing record reader/writer using `RECORDREADER`/`RECORDWRITER` clauses. This should be addressed in separate PR(s).
Author: Cheng Lian <lian@databricks.com>
Closes#8860 from liancheng/spark-10310/fix-script-trans-delimiters.
This patch refactors Python UDF handling:
1. Extract the per-partition Python UDF calling logic from PythonRDD into a PythonRunner. PythonRunner itself expects iterator as input/output, and thus has no dependency on RDD. This way, we can use PythonRunner directly in a mapPartitions call, or in the future in an environment without RDDs.
2. Use PythonRunner in Spark SQL's BatchPythonEvaluation.
3. Updated BatchPythonEvaluation to only use its input once, rather than twice. This should fix Python UDF performance regression in Spark 1.5.
There are a number of small cleanups I wanted to do when I looked at the code, but I kept most of those out so the diff looks small.
This basically implements the approach in https://github.com/apache/spark/pull/8833, but with some code moving around so the correctness doesn't depend on the inner workings of Spark serialization and task execution.
Author: Reynold Xin <rxin@databricks.com>
Closes#8835 from rxin/python-iter-refactor.
https://issues.apache.org/jira/browse/SPARK-10672
With changes in this PR, we will fallback to same the metadata of a table in Spark SQL specific way if we fail to save it in a hive compatible way (Hive throws an exception because of its internal restrictions, e.g. binary and decimal types cannot be saved to parquet if the metastore is running Hive 0.13). I manually tested the fix with the following test in `DataSourceWithHiveMetastoreCatalogSuite` (`spark.sql.hive.metastore.version=0.13` and `spark.sql.hive.metastore.jars`=`maven`).
```
test(s"fail to save metadata of a parquet table in hive 0.13") {
withTempPath { dir =>
withTable("t") {
val path = dir.getCanonicalPath
sql(
s"""CREATE TABLE t USING $provider
|OPTIONS (path '$path')
|AS SELECT 1 AS d1, cast("val_1" as binary) AS d2
""".stripMargin)
sql(
s"""describe formatted t
""".stripMargin).collect.foreach(println)
sqlContext.table("t").show
}
}
}
}
```
Without this fix, we will fail with the following error.
```
org.apache.hadoop.hive.ql.metadata.HiveException: java.lang.UnsupportedOperationException: Unknown field type: binary
at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:619)
at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:576)
at org.apache.spark.sql.hive.client.ClientWrapper$$anonfun$createTable$1.apply$mcV$sp(ClientWrapper.scala:359)
at org.apache.spark.sql.hive.client.ClientWrapper$$anonfun$createTable$1.apply(ClientWrapper.scala:357)
at org.apache.spark.sql.hive.client.ClientWrapper$$anonfun$createTable$1.apply(ClientWrapper.scala:357)
at org.apache.spark.sql.hive.client.ClientWrapper$$anonfun$withHiveState$1.apply(ClientWrapper.scala:256)
at org.apache.spark.sql.hive.client.ClientWrapper.retryLocked(ClientWrapper.scala:211)
at org.apache.spark.sql.hive.client.ClientWrapper.withHiveState(ClientWrapper.scala:248)
at org.apache.spark.sql.hive.client.ClientWrapper.createTable(ClientWrapper.scala:357)
at org.apache.spark.sql.hive.HiveMetastoreCatalog.createDataSourceTable(HiveMetastoreCatalog.scala:358)
at org.apache.spark.sql.hive.execution.CreateMetastoreDataSourceAsSelect.run(commands.scala:285)
at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult$lzycompute(commands.scala:57)
at org.apache.spark.sql.execution.ExecutedCommand.sideEffectResult(commands.scala:57)
at org.apache.spark.sql.execution.ExecutedCommand.doExecute(commands.scala:69)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$5.apply(SparkPlan.scala:140)
at org.apache.spark.sql.execution.SparkPlan$$anonfun$execute$5.apply(SparkPlan.scala:138)
at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:150)
at org.apache.spark.sql.execution.SparkPlan.execute(SparkPlan.scala:138)
at org.apache.spark.sql.execution.QueryExecution.toRdd$lzycompute(QueryExecution.scala:58)
at org.apache.spark.sql.execution.QueryExecution.toRdd(QueryExecution.scala:58)
at org.apache.spark.sql.DataFrame.<init>(DataFrame.scala:144)
at org.apache.spark.sql.DataFrame.<init>(DataFrame.scala:129)
at org.apache.spark.sql.DataFrame$.apply(DataFrame.scala:51)
at org.apache.spark.sql.SQLContext.sql(SQLContext.scala:725)
at org.apache.spark.sql.test.SQLTestUtils$$anonfun$sql$1.apply(SQLTestUtils.scala:56)
at org.apache.spark.sql.test.SQLTestUtils$$anonfun$sql$1.apply(SQLTestUtils.scala:56)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1$$anonfun$apply$mcV$sp$2$$anonfun$apply$2.apply$mcV$sp(HiveMetastoreCatalogSuite.scala:165)
at org.apache.spark.sql.test.SQLTestUtils$class.withTable(SQLTestUtils.scala:150)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite.withTable(HiveMetastoreCatalogSuite.scala:52)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1$$anonfun$apply$mcV$sp$2.apply(HiveMetastoreCatalogSuite.scala:162)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1$$anonfun$apply$mcV$sp$2.apply(HiveMetastoreCatalogSuite.scala:161)
at org.apache.spark.sql.test.SQLTestUtils$class.withTempPath(SQLTestUtils.scala:125)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite.withTempPath(HiveMetastoreCatalogSuite.scala:52)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1.apply$mcV$sp(HiveMetastoreCatalogSuite.scala:161)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1.apply(HiveMetastoreCatalogSuite.scala:161)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite$$anonfun$4$$anonfun$apply$1.apply(HiveMetastoreCatalogSuite.scala:161)
at org.scalatest.Transformer$$anonfun$apply$1.apply$mcV$sp(Transformer.scala:22)
at org.scalatest.OutcomeOf$class.outcomeOf(OutcomeOf.scala:85)
at org.scalatest.OutcomeOf$.outcomeOf(OutcomeOf.scala:104)
at org.scalatest.Transformer.apply(Transformer.scala:22)
at org.scalatest.Transformer.apply(Transformer.scala:20)
at org.scalatest.FunSuiteLike$$anon$1.apply(FunSuiteLike.scala:166)
at org.apache.spark.SparkFunSuite.withFixture(SparkFunSuite.scala:42)
at org.scalatest.FunSuiteLike$class.invokeWithFixture$1(FunSuiteLike.scala:163)
at org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:175)
at org.scalatest.FunSuiteLike$$anonfun$runTest$1.apply(FunSuiteLike.scala:175)
at org.scalatest.SuperEngine.runTestImpl(Engine.scala:306)
at org.scalatest.FunSuiteLike$class.runTest(FunSuiteLike.scala:175)
at org.scalatest.FunSuite.runTest(FunSuite.scala:1555)
at org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:208)
at org.scalatest.FunSuiteLike$$anonfun$runTests$1.apply(FunSuiteLike.scala:208)
at org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:413)
at org.scalatest.SuperEngine$$anonfun$traverseSubNodes$1$1.apply(Engine.scala:401)
at scala.collection.immutable.List.foreach(List.scala:318)
at org.scalatest.SuperEngine.traverseSubNodes$1(Engine.scala:401)
at org.scalatest.SuperEngine.org$scalatest$SuperEngine$$runTestsInBranch(Engine.scala:396)
at org.scalatest.SuperEngine.runTestsImpl(Engine.scala:483)
at org.scalatest.FunSuiteLike$class.runTests(FunSuiteLike.scala:208)
at org.scalatest.FunSuite.runTests(FunSuite.scala:1555)
at org.scalatest.Suite$class.run(Suite.scala:1424)
at org.scalatest.FunSuite.org$scalatest$FunSuiteLike$$super$run(FunSuite.scala:1555)
at org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:212)
at org.scalatest.FunSuiteLike$$anonfun$run$1.apply(FunSuiteLike.scala:212)
at org.scalatest.SuperEngine.runImpl(Engine.scala:545)
at org.scalatest.FunSuiteLike$class.run(FunSuiteLike.scala:212)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite.org$scalatest$BeforeAndAfterAll$$super$run(HiveMetastoreCatalogSuite.scala:52)
at org.scalatest.BeforeAndAfterAll$class.liftedTree1$1(BeforeAndAfterAll.scala:257)
at org.scalatest.BeforeAndAfterAll$class.run(BeforeAndAfterAll.scala:256)
at org.apache.spark.sql.hive.DataSourceWithHiveMetastoreCatalogSuite.run(HiveMetastoreCatalogSuite.scala:52)
at org.scalatest.tools.Framework.org$scalatest$tools$Framework$$runSuite(Framework.scala:462)
at org.scalatest.tools.Framework$ScalaTestTask.execute(Framework.scala:671)
at sbt.ForkMain$Run$2.call(ForkMain.java:294)
at sbt.ForkMain$Run$2.call(ForkMain.java:284)
at java.util.concurrent.FutureTask.run(FutureTask.java:262)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.UnsupportedOperationException: Unknown field type: binary
at org.apache.hadoop.hive.ql.io.parquet.serde.ArrayWritableObjectInspector.getObjectInspector(ArrayWritableObjectInspector.java:108)
at org.apache.hadoop.hive.ql.io.parquet.serde.ArrayWritableObjectInspector.<init>(ArrayWritableObjectInspector.java:60)
at org.apache.hadoop.hive.ql.io.parquet.serde.ParquetHiveSerDe.initialize(ParquetHiveSerDe.java:113)
at org.apache.hadoop.hive.metastore.MetaStoreUtils.getDeserializer(MetaStoreUtils.java:339)
at org.apache.hadoop.hive.ql.metadata.Table.getDeserializerFromMetaStore(Table.java:288)
at org.apache.hadoop.hive.ql.metadata.Table.checkValidity(Table.java:194)
at org.apache.hadoop.hive.ql.metadata.Hive.createTable(Hive.java:597)
... 76 more
```
Author: Yin Huai <yhuai@databricks.com>
Closes#8824 from yhuai/datasourceMetadata.
The current shuffle code has an interface named ShuffleReader with only one implementation, HashShuffleReader. This naming is confusing, since the same read path code is used for both sort- and hash-based shuffle. This patch addresses this by renaming HashShuffleReader to BlockStoreShuffleReader.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#8825 from JoshRosen/shuffle-reader-cleanup.
If we cache the InputFormat, all tasks on the same executor will share it.
Some InputFormat is thread safety, but some are not, such as HiveHBaseTableInputFormat. If tasks share a non thread safe InputFormat, unexpected error may be occurs.
To avoid it, I think we should delete the input format caching.
Author: xutingjun <xutingjun@huawei.com>
Author: meiyoula <1039320815@qq.com>
Author: Xutingjun <xutingjun@huawei.com>
Closes#7918 from XuTingjun/cached_inputFormat.
Currently when you set illegal value for params of array type (such as IntArrayParam, DoubleArrayParam, StringArrayParam), it will throw IllegalArgumentException but with incomprehensible error information.
Take ```VectorSlicer.setNames``` as an example:
```scala
val vectorSlicer = new VectorSlicer().setInputCol("features").setOutputCol("result")
// The value of setNames must be contain distinct elements, so the next line will throw exception.
vectorSlicer.setIndices(Array.empty).setNames(Array("f1", "f4", "f1"))
```
It will throw IllegalArgumentException as:
```
vectorSlicer_b3b4d1a10f43 parameter names given invalid value [Ljava.lang.String;798256c5.
java.lang.IllegalArgumentException: vectorSlicer_b3b4d1a10f43 parameter names given invalid value [Ljava.lang.String;798256c5.
```
We should distinguish the value of array type from primitive type at Param.validate(value: T), and we will get better error information.
```
vectorSlicer_3b744ea277b2 parameter names given invalid value [f1,f4,f1].
java.lang.IllegalArgumentException: vectorSlicer_3b744ea277b2 parameter names given invalid value [f1,f4,f1].
```
Author: Yanbo Liang <ybliang8@gmail.com>
Closes#8863 from yanboliang/spark-10750.
NodeIdCache: prevNodeIdsForInstances.unpersist() needs to be called at end of training.
Author: Holden Karau <holden@pigscanfly.ca>
Closes#8541 from holdenk/SPARK-9962-decission-tree-training-prevNodeIdsForiNstances-unpersist-at-end-of-training.
