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26646 commits

Author SHA1 Message Date
Terry Kim b30278107f [SPARK-30885][SQL][FOLLOW-UP] Fix issues where some V1 commands allow tables that are not fully qualified
### What changes were proposed in this pull request?

There are few V1 commands such as `REFRESH TABLE` that still allow `spark_catalog.t` because they run the commands with parsed table names without trying to load them in the catalog. This PR addresses this issue.

The PR also addresses the issue brought up in https://github.com/apache/spark/pull/27642#discussion_r382402104.

### Why are the changes needed?

To fix a bug where for some V1 commands, `spark_catalog.t` is allowed.

### Does this PR introduce any user-facing change?

Yes, a bug is fixed and `REFRESH TABLE spark_catalog.t` is not allowed.

### How was this patch tested?

Added new test.

Closes #27718 from imback82/fix_TempViewOrV1Table.

Authored-by: Terry Kim <yuminkim@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-03-04 18:09:48 +08:00
Wenchen Fan e4c61e35da [SPARK-30960][SQL] add back the legacy date/timestamp format support in CSV/JSON parser
### What changes were proposed in this pull request?

Before Spark 3.0, the JSON/CSV parser has a special behavior that, when the parser fails to parse a timestamp/date, fallback to another way to parse it, to support some legacy format. The fallback was removed by https://issues.apache.org/jira/browse/SPARK-26178 and https://issues.apache.org/jira/browse/SPARK-26243.

This PR adds back this legacy fallback. Since we switch the API to do datetime operations, we can't be exactly the same as before. Here we add back the support of the legacy formats that are common (examples of Spark 2.4):
1. the fields can have one or two letters
```
scala> sql("""select from_json('{"time":"1123-2-22 2:22:22"}', 'time Timestamp')""").show(false)
+-------------------------------------------+
|jsontostructs({"time":"1123-2-22 2:22:22"})|
+-------------------------------------------+
|[1123-02-22 02:22:22]                      |
+-------------------------------------------+
```
2. the separator between data and time can be "T" as well
```
scala> sql("""select from_json('{"time":"2000-12-12T12:12:12"}', 'time Timestamp')""").show(false)
+---------------------------------------------+
|jsontostructs({"time":"2000-12-12T12:12:12"})|
+---------------------------------------------+
|[2000-12-12 12:12:12]                        |
+---------------------------------------------+
```
3. the second fraction can be arbitrary length
```
scala> sql("""select from_json('{"time":"1123-02-22T02:22:22.123456789123"}', 'time Timestamp')""").show(false)
+----------------------------------------------------------+
|jsontostructs({"time":"1123-02-22T02:22:22.123456789123"})|
+----------------------------------------------------------+
|[1123-02-15 02:22:22.123]                                 |
+----------------------------------------------------------+
```
4. date string can end up with any chars after "T" or space
```
scala> sql("""select from_json('{"time":"1123-02-22Tabc"}', 'time date')""").show(false)
+----------------------------------------+
|jsontostructs({"time":"1123-02-22Tabc"})|
+----------------------------------------+
|[1123-02-22]                            |
+----------------------------------------+
```
5. remove "GMT" from the string before parsing
```
scala> sql("""select from_json('{"time":"GMT1123-2-22 2:22:22.123"}', 'time Timestamp')""").show(false)
+--------------------------------------------------+
|jsontostructs({"time":"GMT1123-2-22 2:22:22.123"})|
+--------------------------------------------------+
|[1123-02-22 02:22:22.123]                         |
+--------------------------------------------------+
```
### Why are the changes needed?

It doesn't hurt to keep this legacy support. It just makes the parsing more relaxed.

### Does this PR introduce any user-facing change?

yes, to make 3.0 support parsing most of the csv/json values that were supported before.

### How was this patch tested?

new tests

Closes #27710 from cloud-fan/bug2.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-04 18:27:44 +09:00
Shixiong Zhu ebfff7af6a [SPARK-30984][SS] Add UI test for Structured Streaming UI
### What changes were proposed in this pull request?

- Add a UI test for Structured Streaming UI
- Fix the unsafe usages of `SimpleDateFormat` by using a ThreadLocal shared object.
- Use `start` to replace `submission` to be consistent with the API `StreamingQuery.start()`.

### Why are the changes needed?

Structured Streaming UI is missing UI tests.

### Does this PR introduce any user-facing change?

No

### How was this patch tested?

The new test.

Closes #27732 from zsxwing/ss-ui-test.

Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-03-04 13:55:34 +08:00
Yuanjian Li f7f1948a8c [SPARK-30289][FOLLOWUP][DOC] Update the migration guide for spark.sql.legacy.ctePrecedencePolicy
### What changes were proposed in this pull request?
Fix the migration guide document for `spark.sql.legacy.ctePrecedence.enabled`, which is introduced in #27579.

### Why are the changes needed?
The config value changed.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Document only.

Closes #27782 from xuanyuanking/SPARK-30829-follow.

Authored-by: Yuanjian Li <xyliyuanjian@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-04 13:56:02 +09:00
zero323 e1b3e9a3d2 [SPARK-29212][ML][PYSPARK] Add common classes without using JVM backend
### What changes were proposed in this pull request?

Implement common base ML classes (`Predictor`, `PredictionModel`, `Classifier`, `ClasssificationModel` `ProbabilisticClassifier`, `ProbabilisticClasssificationModel`, `Regressor`, `RegrssionModel`) for non-Java backends.

Note

- `Predictor` and `JavaClassifier` should be abstract as `_fit` method is not implemented.
- `PredictionModel` should be abstract as `_transform` is not implemented.

### Why are the changes needed?

To provide extensions points for non-JVM algorithms, as well as a public (as opposed to `Java*` variants, which are commonly described in docstrings as private) hierarchy which can be used to distinguish between different classes of predictors.

For longer discussion see [SPARK-29212](https://issues.apache.org/jira/browse/SPARK-29212) and / or https://github.com/apache/spark/pull/25776.

### Does this PR introduce any user-facing change?

It adds new base classes as listed above, but effective interfaces (method resolution order notwithstanding) stay the same.

Additionally "private" `Java*` classes in`ml.regression` and `ml.classification` have been renamed to follow PEP-8 conventions (added leading underscore).

It is for discussion if the same should be done to equivalent classes from `ml.wrapper`.

If we take `JavaClassifier` as an example, type hierarchy will change from

![old pyspark ml classification JavaClassifier](https://user-images.githubusercontent.com/1554276/72657093-5c0b0c80-39a0-11ea-9069-a897d75de483.png)

to

![new pyspark ml classification _JavaClassifier](https://user-images.githubusercontent.com/1554276/72657098-64fbde00-39a0-11ea-8f80-01187a5ea5a6.png)

Similarly the old model

![old pyspark ml classification JavaClassificationModel](https://user-images.githubusercontent.com/1554276/72657103-7513bd80-39a0-11ea-9ffc-59eb6ab61fde.png)

will become

![new pyspark ml classification _JavaClassificationModel](https://user-images.githubusercontent.com/1554276/72657110-80ff7f80-39a0-11ea-9f5c-fe408664e827.png)

### How was this patch tested?

Existing unit tests.

Closes #27245 from zero323/SPARK-29212.

Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: zhengruifeng <ruifengz@foxmail.com>
2020-03-04 12:20:02 +08:00
zhengruifeng 111e9038d8 [SPARK-30770][ML] avoid vector conversion in GMM.transform
### What changes were proposed in this pull request?
Current impl needs to convert ml.Vector to breeze.Vector, which can be skipped.

### Why are the changes needed?
avoid unnecessary vector conversions

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
existing testsuites

Closes #27519 from zhengruifeng/gmm_transform_opt.

Authored-by: zhengruifeng <ruifengz@foxmail.com>
Signed-off-by: zhengruifeng <ruifengz@foxmail.com>
2020-03-04 11:02:27 +08:00
yi.wu 380e887631 [SPARK-30999][SQL] Don't cancel a QueryStageExec which failed before call doMaterialize
### What changes were proposed in this pull request?

This PR proposes to not cancel a `QueryStageExec` which failed before calling `doMaterialize`.

Besides, this PR also includes 2 minor improvements:

* fail fast when stage failed before calling `doMaterialize`

* format Exception with Cause

### Why are the changes needed?

For a stage which failed before materializing the lazy value (e.g. `inputRDD`), calling `cancel` on it could re-trigger the same failure again, e.g. executing child node again(see `AdaptiveQueryExecSuite`.`SPARK-30291: AQE should catch the exceptions when doing materialize` for example). And finally, the same failure will be counted 2 times, one is for materialize error and another is for cancel error.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Updated test.

Closes #27752 from Ngone51/avoid_cancel_finished_stage.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2020-03-03 13:40:51 -08:00
Takeshi Yamamuro 4a1d273a4a [SPARK-30997][SQL] Fix an analysis failure in generators with aggregate functions
### What changes were proposed in this pull request?

We have supported generators in SQL aggregate expressions by SPARK-28782.
But, the generator(explode) query with aggregate functions in DataFrame failed as follows;

```
// SPARK-28782: Generator support in aggregate expressions
scala> spark.range(3).toDF("id").createOrReplaceTempView("t")
scala> sql("select explode(array(min(id), max(id))) from t").show()
+---+
|col|
+---+
|  0|
|  2|
+---+

// A failure case handled in this pr
scala> spark.range(3).select(explode(array(min($"id"), max($"id")))).show()
org.apache.spark.sql.AnalysisException:
The query operator `Generate` contains one or more unsupported
expression types Aggregate, Window or Generate.
Invalid expressions: [min(`id`), max(`id`)];;
Project [col#46L]
+- Generate explode(array(min(id#42L), max(id#42L))), false, [col#46L]
   +- Range (0, 3, step=1, splits=Some(4))

  at org.apache.spark.sql.catalyst.analysis.CheckAnalysis.failAnalysis(CheckAnalysis.scala:49)
  at org.apache.spark.sql.catalyst.analysis.CheckAnalysis.failAnalysis$(CheckAnalysis.scala:48)
  at org.apache.spark.sql.catalyst.analysis.Analyzer.failAnalysis(Analyzer.scala:129)
```

The root cause is that `ExtractGenerator` wrongly replaces a project w/ aggregate functions
before `GlobalAggregates` replaces it with an aggregate as follows;

```
scala> sql("SET spark.sql.optimizer.planChangeLog.level=warn")
scala> spark.range(3).select(explode(array(min($"id"), max($"id")))).show()

20/03/01 12:51:58 WARN HiveSessionStateBuilder$$anon$1:
=== Applying Rule org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveReferences ===
!'Project [explode(array(min('id), max('id))) AS List()]   'Project [explode(array(min(id#72L), max(id#72L))) AS List()]
 +- Range (0, 3, step=1, splits=Some(4))                   +- Range (0, 3, step=1, splits=Some(4))

20/03/01 12:51:58 WARN HiveSessionStateBuilder$$anon$1:
=== Applying Rule org.apache.spark.sql.catalyst.analysis.Analyzer$ExtractGenerator ===
!'Project [explode(array(min(id#72L), max(id#72L))) AS List()]   Project [col#76L]
!+- Range (0, 3, step=1, splits=Some(4))                         +- Generate explode(array(min(id#72L), max(id#72L))), false, [col#76L]
!                                                                   +- Range (0, 3, step=1, splits=Some(4))

20/03/01 12:51:58 WARN HiveSessionStateBuilder$$anon$1:
=== Result of Batch Resolution ===
!'Project [explode(array(min('id), max('id))) AS List()]   Project [col#76L]
!+- Range (0, 3, step=1, splits=Some(4))                   +- Generate explode(array(min(id#72L), max(id#72L))), false, [col#76L]
!                                                             +- Range (0, 3, step=1, splits=Some(4))

// the analysis failed here...
```

To avoid the case in `ExtractGenerator`, this pr addes a condition to ignore generators having aggregate functions.
A correct sequence of rules is as follows;

```
20/03/01 13:19:06 WARN HiveSessionStateBuilder$$anon$1:
=== Applying Rule org.apache.spark.sql.catalyst.analysis.Analyzer$ResolveReferences ===
!'Project [explode(array(min('id), max('id))) AS List()]   'Project [explode(array(min(id#27L), max(id#27L))) AS List()]
 +- Range (0, 3, step=1, splits=Some(4))                   +- Range (0, 3, step=1, splits=Some(4))

20/03/01 13:19:06 WARN HiveSessionStateBuilder$$anon$1:
=== Applying Rule org.apache.spark.sql.catalyst.analysis.Analyzer$GlobalAggregates ===
!'Project [explode(array(min(id#27L), max(id#27L))) AS List()]   'Aggregate [explode(array(min(id#27L), max(id#27L))) AS List()]
 +- Range (0, 3, step=1, splits=Some(4))                         +- Range (0, 3, step=1, splits=Some(4))

20/03/01 13:19:06 WARN HiveSessionStateBuilder$$anon$1:
=== Applying Rule org.apache.spark.sql.catalyst.analysis.Analyzer$ExtractGenerator ===
!'Aggregate [explode(array(min(id#27L), max(id#27L))) AS List()]   'Project [explode(_gen_input_0#31) AS List()]
!+- Range (0, 3, step=1, splits=Some(4))                           +- Aggregate [array(min(id#27L), max(id#27L)) AS _gen_input_0#31]
!                                                                     +- Range (0, 3, step=1, splits=Some(4))

```

### Why are the changes needed?

A bug fix.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Added tests.

Closes #27749 from maropu/ExplodeInAggregate.

Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2020-03-03 12:25:12 -08:00
Terry Kim c263c15408 [SPARK-31015][SQL] Star(*) expression fails when used with qualified column names for v2 tables
### What changes were proposed in this pull request?

For a v2 table created with `CREATE TABLE testcat.ns1.ns2.tbl (id bigint, name string) USING foo`, the following works as expected
```
SELECT testcat.ns1.ns2.tbl.id FROM testcat.ns1.ns2.tbl
```
, but a query with qualified column name with star(*)
```
SELECT testcat.ns1.ns2.tbl.* FROM testcat.ns1.ns2.tbl
[info]   org.apache.spark.sql.AnalysisException: cannot resolve 'testcat.ns1.ns2.tbl.*' given input columns 'id, name';
```
fails to resolve. And this PR proposes to fix this issue.

### Why are the changes needed?

To fix a bug as describe above.

### Does this PR introduce any user-facing change?

Yes, now `SELECT testcat.ns1.ns2.tbl.* FROM testcat.ns1.ns2.tbl` works as expected.

### How was this patch tested?

Added new test.

Closes #27766 from imback82/fix_star_expression.

Authored-by: Terry Kim <yuminkim@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-03-04 00:55:26 +08:00
Javier 3ff2135686 [SPARK-30049][SQL] SQL fails to parse when comment contains an unmatched quote character
### What changes were proposed in this pull request?

A SQL statement that contains a comment with an unmatched quote character can lead to a parse error:
- Added a insideComment flag in the splitter method to avoid checking single and double quotes within a comment:
```
spark-sql> SELECT 1 -- someone's comment here
         > ;
Error in query:
extraneous input ';' expecting <EOF>(line 2, pos 0)

== SQL ==
SELECT 1 -- someone's comment here
;
^^^
```

### Why are the changes needed?

This misbehaviour was not present on previous spark versions.

### Does this PR introduce any user-facing change?

- No

### How was this patch tested?

- New tests were added.

Closes #27321 from javierivanov/SPARK-30049B.

Lead-authored-by: Javier <jfuentes@hortonworks.com>
Co-authored-by: Javier Fuentes <j.fuentes.m@icloud.com>
Signed-off-by: Thomas Graves <tgraves@apache.org>
2020-03-03 09:55:15 -06:00
xuesenliang 7a4cf339d7 [SPARK-30388][CORE] Mark running map stages of finished job as finished, and cancel running tasks
### What changes were proposed in this pull request?

When a job finished, its running (re-submitted) map stages should be marked as finished if not used by other jobs. The running tasks of these stages are cancelled.

And the ListenerBus should be notified too, otherwise, these map stage items will stay on the "Active Stages" page of web UI and never gone.

For example:

Suppose job 0 has two stages: map stage 0 and result stage 1. Map stage 0 has two partitions, and its result stage 1 has two partitions too.

**Steps to reproduce the bug:**
1. map stage 0:    start task 0(```TID 0```) and task 1 (```TID 1```), then both finished successfully.
2. result stage 1:  start task 0(```TID 2```) and task 1 (```TID 3```)
3. result stage 1:  task 0(```TID 2```) finished successfully
4. result stage 1:  speculative task 1.1(```TID 4```) launched, but then failed due to FetchFailedException.
5. driver re-submits map stage 0 and result stage 1.
6. map stage 0 (retry 1): task0(```TID 5```) launched
7. result stage 1: task 1(```TID 3```) finished successfully, so job 0 finished.
8. map stage 0 is removed from ```runningStages``` and ```stageIdToStage```, because it doesn't belong to any job.
```
  private def DAGScheduler#cleanupStateForJobAndIndependentStages(job: ActiveJob): HashSet[Stage] = {
   ...
      stageIdToStage.filterKeys(stageId => registeredStages.get.contains(stageId)).foreach {
        case (stageId, stage) =>
            ...
            def removeStage(stageId: Int): Unit = {
              for (stage <- stageIdToStage.get(stageId)) {
                if (runningStages.contains(stage)) {
                  logDebug("Removing running stage %d".format(stageId))
                  runningStages -= stage
                }
                ...
              }
              stageIdToStage -= stageId
            }

            jobSet -= job.jobId
            if (jobSet.isEmpty) { // no other job needs this stage
              removeStage(stageId)
            }
          }
  ...
  }

```
9. map stage 0 (retry 1): task0(TID 5) finished successfully, but its stage 0 is not in ```stageIdToStage```, so the stage not ```markStageAsFinished```
```
  private[scheduler] def DAGScheduler#handleTaskCompletion(event: CompletionEvent): Unit = {
    val task = event.task
    val stageId = task.stageId
    ...
    if (!stageIdToStage.contains(task.stageId)) {
      postTaskEnd(event)
      // Skip all the actions if the stage has been cancelled.
      return
    }
    ...
```

#### Relevant spark driver logs as follows:

```
20/01/02 11:21:45 INFO DAGScheduler: Got job 0 (main at NativeMethodAccessorImpl.java:0) with 2 output partitions
20/01/02 11:21:45 INFO DAGScheduler: Final stage: ResultStage 1 (main at NativeMethodAccessorImpl.java:0)
20/01/02 11:21:45 INFO DAGScheduler: Parents of final stage: List(ShuffleMapStage 0)
20/01/02 11:21:45 INFO DAGScheduler: Missing parents: List(ShuffleMapStage 0)

20/01/02 11:21:45 INFO DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[2] at main at NativeMethodAccessorImpl.java:0), which has no missing parents
20/01/02 11:21:45 INFO DAGScheduler: Submitting 2 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[2] at main at NativeMethodAccessorImpl.java:0) (first 15 tasks are for partitions Vector(0, 1))
20/01/02 11:21:45 INFO YarnClusterScheduler: Adding task set 0.0 with 2 tasks
20/01/02 11:21:45 INFO TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, 9.179.143.4, executor 1, partition 0, PROCESS_LOCAL, 7704 bytes)
20/01/02 11:21:45 INFO TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, 9.76.13.26, executor 2, partition 1, PROCESS_LOCAL, 7705 bytes)
20/01/02 11:22:18 INFO TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 32491 ms on 9.179.143.4 (executor 1) (1/2)
20/01/02 11:22:26 INFO TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 40544 ms on 9.76.13.26 (executor 2) (2/2)
20/01/02 11:22:26 INFO DAGScheduler: ShuffleMapStage 0 (main at NativeMethodAccessorImpl.java:0) finished in 40.854 s
20/01/02 11:22:26 INFO YarnClusterScheduler: Removed TaskSet 0.0, whose tasks have all completed, from pool

20/01/02 11:22:26 INFO DAGScheduler: Submitting ResultStage 1 (MapPartitionsRDD[6] at main at NativeMethodAccessorImpl.java:0), which has no missing parents
20/01/02 11:22:26 INFO DAGScheduler: Submitting 2 missing tasks from ResultStage 1 (MapPartitionsRDD[6] at main at NativeMethodAccessorImpl.java:0) (first 15 tasks are for partitions Vector(0, 1))
20/01/02 11:22:26 INFO YarnClusterScheduler: Adding task set 1.0 with 2 tasks
20/01/02 11:22:26 INFO TaskSetManager: Starting task 0.0 in stage 1.0 (TID 2, 9.179.143.4, executor 1, partition 0, NODE_LOCAL, 7929 bytes)
20/01/02 11:22:26 INFO TaskSetManager: Starting task 1.0 in stage 1.0 (TID 3, 9.76.13.26, executor 2, partition 1, NODE_LOCAL, 7929 bytes)
20/01/02 11:22:26 INFO TaskSetManager: Finished task 0.0 in stage 1.0 (TID 2) in 79 ms on 9.179.143.4 (executor 1) (1/2)

20/01/02 11:22:26 INFO TaskSetManager: Marking task 1 in stage 1.0 (on 9.76.13.26) as speculatable because it ran more than 158 ms
20/01/02 11:22:26 INFO TaskSetManager: Starting task 1.1 in stage 1.0 (TID 4, 9.179.143.52, executor 3, partition 1, ANY, 7929 bytes)
20/01/02 11:22:26 WARN TaskSetManager: Lost task 1.1 in stage 1.0 (TID 4, 9.179.143.52, executor 3): FetchFailed(BlockManagerId(1, 9.179.143.4, 7337, None), shuffleId=0, mapId=0, reduceId=1, message=org.apache.spark.shuffle.FetchFailedException: Connection reset by peer)
20/01/02 11:22:26 INFO TaskSetManager: Task 1.1 in stage 1.0 (TID 4) failed, but the task will not be re-executed (either because the task failed with a shuffle data fetch failure, so the previous stage needs to be re-run, or because a different copy of the task has already succeeded).
20/01/02 11:22:26 INFO DAGScheduler: Marking ResultStage 1 (main at NativeMethodAccessorImpl.java:0) as failed due to a fetch failure from ShuffleMapStage 0 (main at NativeMethodAccessorImpl.java:0)
20/01/02 11:22:26 INFO DAGScheduler: ResultStage 1 (main at NativeMethodAccessorImpl.java:0) failed in 0.261 s due to org.apache.spark.shuffle.FetchFailedException: Connection reset by peer
20/01/02 11:22:26 INFO DAGScheduler: Resubmitting ShuffleMapStage 0 (main at NativeMethodAccessorImpl.java:0) and ResultStage 1 (main at NativeMethodAccessorImpl.java:0) due to fetch failure
20/01/02 11:22:26 INFO DAGScheduler: Resubmitting failed stages

20/01/02 11:22:26 INFO DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[2] at main at NativeMethodAccessorImpl.java:0), which has no missing parents
20/01/02 11:22:26 INFO DAGScheduler: Submitting 1 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[2] at main at NativeMethodAccessorImpl.java:0) (first 15 tasks are for partitions Vector(0))
20/01/02 11:22:26 INFO YarnClusterScheduler: Adding task set 0.1 with 1 tasks
20/01/02 11:22:26 INFO TaskSetManager: Starting task 0.0 in stage 0.1 (TID 5, 9.179.143.4, executor 1, partition 0, PROCESS_LOCAL, 7704 bytes)

// NOTE: Here should be "INFO TaskSetManager: Finished task 1.0 in stage 1.0 (TID 3) in 10000 ms on 9.76.13.26 (executor 2) (2/2)"
// and this bug is being fixed in https://issues.apache.org/jira/browse/SPARK-30404

20/01/02 11:22:36 INFO TaskSetManager: Ignoring task-finished event for 1.0 in stage 1.0 because task 1 has already completed successfully

20/01/02 11:22:36 INFO YarnClusterScheduler: Removed TaskSet 1.0, whose tasks have all completed, from pool
20/01/02 11:22:36 INFO DAGScheduler: ResultStage 1 (main at NativeMethodAccessorImpl.java:0) finished in 10.131 s
20/01/02 11:22:36 INFO DAGScheduler: Job 0 finished: main at NativeMethodAccessorImpl.java:0, took 51.031212 s

20/01/02 11:22:58 INFO TaskSetManager: Finished task 0.0 in stage 0.1 (TID 5) in 32029 ms on 9.179.143.4 (executor 1) (1/1)
20/01/02 11:22:58 INFO YarnClusterScheduler: Removed TaskSet 0.1, whose tasks have all completed, from pool
```

### Why are the changes needed?

web UI is incorrect: ```stage 0 (retry 1)``` is finished, but it stays in ```Active Stages``` Page.

![active_stage](https://user-images.githubusercontent.com/4401756/71656718-71185680-2d77-11ea-8dbc-fd8085ab3dfb.png)

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
A new test case is added.

And test manually on cluster. The result is as follows:
![cancel_stage](https://user-images.githubusercontent.com/4401756/71658434-04a15580-2d7f-11ea-952b-dd8dd685f37d.png)

Closes #27050 from liangxs/master.

Authored-by: xuesenliang <xuesenliang@tencent.com>
Signed-off-by: Thomas Graves <tgraves@apache.org>
2020-03-03 09:29:43 -06:00
Sean Owen 97d9a22b04 [SPARK-30994][CORE] Update xerces to 2.12.0
### What changes were proposed in this pull request?

Manage up the version of Xerces that Hadoop uses (and potentially user apps) to 2.12.0 to match https://issues.apache.org/jira/browse/HADOOP-16530

### Why are the changes needed?

Picks up bug and security fixes: https://www.xml.com/news/2018-05-apache-xerces-j-2120/

### Does this PR introduce any user-facing change?

Should be no behavior changes.

### How was this patch tested?

Existing tests.

Closes #27746 from srowen/SPARK-30994.

Authored-by: Sean Owen <srowen@gmail.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-03-03 09:27:18 -06:00
roland-ondeviceresearch a4aaee01fa [MINOR][DOCS] ForeachBatch java example fix
### What changes were proposed in this pull request?
ForEachBatch Java example was incorrect

### Why are the changes needed?
Example did not compile

### Does this PR introduce any user-facing change?
Yes, to docs.

### How was this patch tested?
In IDE.

Closes #27740 from roland1982/foreachwriter_java_example_fix.

Authored-by: roland-ondeviceresearch <roland@ondeviceresearch.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-03-03 09:24:33 -06:00
Gengliang Wang b5166aac1f [SPARK-31013][CORE][WEBUI] InMemoryStore: improve removeAllByIndexValues over natural key index
### What changes were proposed in this pull request?

The method `removeAllByIndexValues` in KVStore is to delete all the objects which have certain values in the given index.
However, in the current implementation of `InMemoryStore`, when the given index is the natural key index, there is no special handling for it and a linear search over all the task data is performed.

We can improve it by deleting the natural keys directly from the internal hashmap.

### Why are the changes needed?

Better performance if the given index for `removeAllByIndexValues` is the natural key index in
`InMemoryStore`
### Does this PR introduce any user-facing change?

No

### How was this patch tested?

Enhance the existing test.

Closes #27763 from gengliangwang/useNaturalIndex.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-03-03 19:34:19 +08:00
Takeshi Yamamuro 313e62c376 [SPARK-30998][SQL] ClassCastException when a generator having nested inner generators
### What changes were proposed in this pull request?

A query below failed in the master;

```
scala> sql("select array(array(1, 2), array(3)) ar").select(explode(explode($"ar"))).show()
20/03/01 13:51:56 ERROR Executor: Exception in task 0.0 in stage 0.0 (TID 0)/ 1]
java.lang.ClassCastException: scala.collection.mutable.ArrayOps$ofRef cannot be cast to org.apache.spark.sql.catalyst.util.ArrayData
	at org.apache.spark.sql.catalyst.expressions.ExplodeBase.eval(generators.scala:313)
	at org.apache.spark.sql.execution.GenerateExec.$anonfun$doExecute$8(GenerateExec.scala:108)
	at scala.collection.Iterator$$anon$11.nextCur(Iterator.scala:484)
	at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:490)
	at scala.collection.Iterator$ConcatIterator.hasNext(Iterator.scala:222)
	at scala.collection.Iterator$$anon$10.hasNext(Iterator.scala:458)
    ...
```

This pr modified the `hasNestedGenerator` code in `ExtractGenerator` for correctly catching nested inner generators.

### Why are the changes needed?

A bug fix.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Added tests.

Closes #27750 from maropu/HandleNestedGenerators.

Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Takeshi Yamamuro <yamamuro@apache.org>
2020-03-03 19:00:33 +09:00
Kent Yao 1fac06c430 Revert "[SPARK-30808][SQL] Enable Java 8 time API in Thrift server"
This reverts commit afaeb29599.

### What changes were proposed in this pull request?

Based on the result and comment from https://github.com/apache/spark/pull/27552#discussion_r385531744

In the hive module, server-side provides datetime values simply use `value.toSting`, and the client-side regenerates the results back in `HiveBaseResultSet` with `java.sql.Date(Timestamp).valueOf`.
there will be inconsistency between client and server if we use java8 APIs

### Why are the changes needed?

the change is still unclear enough

### Does this PR introduce any user-facing change?

no
### How was this patch tested?

Nah

Closes #27733 from yaooqinn/SPARK-30808.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-03-03 14:21:20 +08:00
HyukjinKwon 3956e95f05 [SPARK-25202][SQL][FOLLOW-UP] Keep the old parameter name 'pattern' at split in Scala API
### What changes were proposed in this pull request?

To address the concern pointed out in https://github.com/apache/spark/pull/22227. This will make `split` source-compatible by removing minimal cosmetic changes.

### Why are the changes needed?

For source compatibility.

### Does this PR introduce any user-facing change?

No (it will prevent potential user-facing change from the original PR)

### How was this patch tested?

Unittest was changed (in order for us to detect that source compatibility easily).

Closes #27756 from HyukjinKwon/SPARK-25202.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-03 10:24:50 +09:00
maryannxue 473a28c1d0 [SPARK-30991] Refactor AQE readers and RDDs
### What changes were proposed in this pull request?
This PR combines `CustomShuffledRowRDD` and `LocalShuffledRowRDD` into `ShuffledRowRDD`, and creates `CustomShuffleReaderExec` to unify and replace all existing AQE readers: `CoalescedShuffleReaderExec`, `LocalShuffleReaderExec` and `SkewJoinShuffleReaderExec`.

### Why are the changes needed?
To reduce code redundancy.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Passed existing UTs.

Closes #27742 from maryannxue/aqe-readers.

Authored-by: maryannxue <maryannxue@apache.org>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
2020-03-02 16:04:00 -08:00
Josh Rosen f0010c81e2 [SPARK-31003][TESTS] Fix incorrect uses of assume() in tests
### What changes were proposed in this pull request?

This patch fixes several incorrect uses of `assume()` in our tests.

If a call to `assume(condition)` fails then it will cause the test to be marked as skipped instead of failed: this feature allows test cases to be skipped if certain prerequisites are missing. For example, we use this to skip certain tests when running on Windows (or when Python dependencies are unavailable).

In contrast, `assert(condition)` will fail the test if the condition doesn't hold.

If `assume()` is accidentally substituted for `assert()`then the resulting test will be marked as skipped in cases where it should have failed, undermining the purpose of the test.

This patch fixes several such cases, replacing certain `assume()` calls with `assert()`.

Credit to ahirreddy for spotting this problem.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Existing tests.

Closes #27754 from JoshRosen/fix-assume-vs-assert.

Lead-authored-by: Josh Rosen <rosenville@gmail.com>
Co-authored-by: Josh Rosen <joshrosen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2020-03-02 15:20:45 -08:00
yi.wu b517f991fe [SPARK-30969][CORE] Remove resource coordination support from Standalone
### What changes were proposed in this pull request?

Remove automatically resource coordination support from Standalone.

### Why are the changes needed?

Resource coordination is mainly designed for the scenario where multiple workers launched on the same host. However, it's, actually, a non-existed  scenario for today's Spark. Because, Spark now can start multiple executors in a single Worker, while it only allow one executor per Worker at very beginning. So, now, it really help nothing for user to launch multiple workers on the same host. Thus, it's not worth for us to bring over complicated implementation and potential high maintain cost for such an impossible scenario.

### Does this PR introduce any user-facing change?

No, it's Spark 3.0 feature.

### How was this patch tested?

Pass Jenkins.

Closes #27722 from Ngone51/abandon_coordination.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Xingbo Jiang <xingbo.jiang@databricks.com>
2020-03-02 11:23:07 -08:00
Wu, Xiaochang ac122762f5 [SPARK-30813][ML] Fix Matrices.sprand comments
### What changes were proposed in this pull request?
Fix mistakes in comments

### Why are the changes needed?
There are mistakes in comments

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
N/A

Closes #27564 from xwu99/fix-mllib-sprand-comment.

Authored-by: Wu, Xiaochang <xiaochang.wu@intel.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-03-02 08:56:17 -06:00
Jungtaek Lim (HeartSaVioR) f24a46011c [SPARK-30993][SQL] Use its sql type for UDT when checking the type of length (fixed/var) or mutable
### What changes were proposed in this pull request?

This patch fixes the bug of UnsafeRow which misses to handle the UDT specifically, in `isFixedLength` and `isMutable`. These methods don't check its SQL type for UDT, always treating UDT as variable-length, and non-mutable.

It doesn't bring any issue if UDT is used to represent complicated type, but when UDT is used to represent some type which is matched with fixed length of SQL type, it exposes the chance of correctness issues, as these informations sometimes decide how the value should be handled.

We got report from user mailing list which suspected as mapGroupsWithState looks like handling UDT incorrectly, but after some investigation it was from GenerateUnsafeRowJoiner in shuffle phase.

0e2ca11d80/sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/expressions/codegen/GenerateUnsafeRowJoiner.scala (L32-L43)

Here updating position should not happen on fixed-length column, but due to this bug, the value of UDT having fixed-length as sql type would be modified, which actually corrupts the value.

### Why are the changes needed?

Misclassifying of the type of length for UDT can corrupt the value when the row is presented to the input of GenerateUnsafeRowJoiner, which brings correctness issue.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

New UT added.

Closes #27747 from HeartSaVioR/SPARK-30993.

Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan.opensource@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-03-02 22:33:11 +08:00
Gengliang Wang 6b641430c3 [SPARK-30964][CORE][WEBUI] Accelerate InMemoryStore with a new index
### What changes were proposed in this pull request?

Spark uses the class `InMemoryStore` as the KV storage for live UI and history server(by default if no LevelDB file path is provided).
In `InMemoryStore`, all the task data in one application is stored in a hashmap, which key is the task ID and the value is the task data. This fine for getting or deleting with a provided task ID.
However, Spark stage UI always shows all the task data in one stage and the current implementation is to look up all the values in the hashmap. The time complexity is O(numOfTasks).
Also, when there are too many stages (>spark.ui.retainedStages), Spark will linearly try to look up all the task data of the stages to be deleted as well.

This can be very bad for a large application with many stages and tasks. We can improve it by allowing the natural key of an entity to have a real parent index. So that on each lookup with parent node provided, Spark can look up all the natural keys(in our case, the task IDs) first, and then find the data with the natural keys in the hashmap.

### Why are the changes needed?

The in-memory KV store becomes really slow for large applications. We can improve it with a new index. The performance can be 10 times, 100 times, even 1000 times faster.
This is also possible to make the Spark driver more stable for large applications.

### Does this PR introduce any user-facing change?

No

### How was this patch tested?

Existing unit tests.
Also, I run a benchmark with the following code
```
  val store = new InMemoryStore()
  val numberOfTasksPerStage = 10000
   (0 until 1000).map { sId =>
     (0 until numberOfTasksPerStage).map { taskId =>
       val task = newTaskData(sId * numberOfTasksPerStage + taskId, "SUCCESS", sId)
       store.write(task)
     }
   }
  val appStatusStore = new AppStatusStore(store)
  var start = System.nanoTime()
  appStatusStore.taskSummary(2, attemptId, Array(0, 0.25, 0.5, 0.75, 1))
  println("task summary run time: " + ((System.nanoTime() - start) / 1000000))
  val stageIds = Seq(1, 11, 66, 88)
  val stageKeys = stageIds.map(Array(_, attemptId))
  start = System.nanoTime()
  store.removeAllByIndexValues(classOf[TaskDataWrapper], TaskIndexNames.STAGE,
    stageKeys.asJavaCollection)
   println("clean up tasks run time: " + ((System.nanoTime() - start) / 1000000))
```

Task summary before the changes: 98642ms
Task summary after the changes: 120ms

Task clean up before the changes:  4900ms
Task clean up before the changes: 4ms

It's 800x faster after the changes in the micro-benchmark.

Closes #27716 from gengliangwang/liveUIStore.

Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-03-02 15:48:48 +08:00
beliefer 71365c2502 [SPARK-30912][CORE][DOC] Add version information to the configuration of Streaming.scala
### What changes were proposed in this pull request?
1.Add version information to the configuration of `Streaming`.
2.Update the docs of `Streaming`.

I sorted out some information show below.

Item name | Since version | JIRA ID | Commit ID | Note
-- | -- | -- | -- | --
spark.streaming.dynamicAllocation.enabled | 3.0.0 | SPARK-26941 | cad475dcc9376557f882859856286e858002389a#diff-335c3bbf4ca27cf65a6f850b1a7c89dd |
spark.streaming.dynamicAllocation.testing | 3.0.0 | SPARK-26941 | cad475dcc9376557f882859856286e858002389a#diff-335c3bbf4ca27cf65a6f850b1a7c89dd |
spark.streaming.dynamicAllocation.minExecutors | 3.0.0 | SPARK-26941 | cad475dcc9376557f882859856286e858002389a#diff-335c3bbf4ca27cf65a6f850b1a7c89dd |
spark.streaming.dynamicAllocation.maxExecutors | 3.0.0 | SPARK-26941 | cad475dcc9376557f882859856286e858002389a#diff-335c3bbf4ca27cf65a6f850b1a7c89dd |
spark.streaming.dynamicAllocation.scalingInterval | 3.0.0 | SPARK-26941 | cad475dcc9376557f882859856286e858002389a#diff-335c3bbf4ca27cf65a6f850b1a7c89dd |
spark.streaming.dynamicAllocation.scalingUpRatio | 3.0.0 | SPARK-26941 | cad475dcc9376557f882859856286e858002389a#diff-335c3bbf4ca27cf65a6f850b1a7c89dd |
spark.streaming.dynamicAllocation.scalingDownRatio | 3.0.0 | SPARK-26941 | cad475dcc9376557f882859856286e858002389a#diff-335c3bbf4ca27cf65a6f850b1a7c89dd |

### Why are the changes needed?
Supplemental configuration version information.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Exists UT

Closes #27745 from beliefer/add-version-to-streaming-config.

Authored-by: beliefer <beliefer@163.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-02 15:16:40 +09:00
beliefer c63366a693 [SPARK-30891][CORE][DOC] Add version information to the configuration of History
### What changes were proposed in this pull request?
1.Add version information to the configuration of `History`.
2.Update the docs of `History`.

I sorted out some information show below.

Item name | Since version | JIRA ID | Commit ID | Note
-- | -- | -- | -- | --
spark.history.fs.logDirectory | 1.1.0 | SPARK-1768 | 21ddd7d1e9f8e2a726427f32422c31706a20ba3f#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e |  
spark.history.fs.safemodeCheck.interval | 1.6.0 | SPARK-11020 | cf04fdfe71abc395163a625cc1f99ec5e54cc07e#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e |  
spark.history.fs.update.interval | 1.4.0 | SPARK-6046 | 4527761bcd6501c362baf2780905a0018b9a74ba#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e |  
spark.history.fs.cleaner.enabled | 1.3.0 | SPARK-3562 | 8942b522d8a3269a2a357e3a274ed4b3e66ebdde#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e | Branch branch-1.3 does not exist, exists in branch-1.4, but it is 1.3.0-SNAPSHOT in pom.xml
spark.history.fs.cleaner.interval | 1.4.0 | SPARK-5933 | 1991337336596f94698e79c2366f065c374128ab#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e |
spark.history.fs.cleaner.maxAge | 1.4.0 | SPARK-5933 | 1991337336596f94698e79c2366f065c374128ab#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e |
spark.history.fs.cleaner.maxNum | 3.0.0 | SPARK-28294 | bbc2be4f425c4c26450e1bf21db407e81046ce21#diff-6bddeb5e25239974fc13db66266b167b |  
spark.history.store.path | 2.3.0 | SPARK-20642 | 74daf622de4e534d5a5929b424a6e836850eefad#diff-19f35f981fdc5b0a46f070b879a9a9fc |  
spark.history.store.maxDiskUsage | 2.3.0 | SPARK-20654 | 8b497046c647a21bbed1bdfbdcb176745a1d5cd5#diff-19f35f981fdc5b0a46f070b879a9a9fc |  
spark.history.ui.port | 1.0.0 | SPARK-1276 | 9ae80bf9bd3e4da7443af97b41fe26aa5d35d70b#diff-b49b5b9c31ddb36a9061004b5b723058 |  
spark.history.fs.inProgressOptimization.enabled | 2.4.0 | SPARK-6951 | 653fe02415a537299e15f92b56045569864b6183#diff-19f35f981fdc5b0a46f070b879a9a9fc |  
spark.history.fs.endEventReparseChunkSize | 2.4.0 | SPARK-6951 | 653fe02415a537299e15f92b56045569864b6183#diff-19f35f981fdc5b0a46f070b879a9a9fc |  
spark.history.fs.eventLog.rolling.maxFilesToRetain | 3.0.0 | SPARK-30481 | a2fe73b83c0e7c61d1c83b236565a71e3d005a71#diff-6bddeb5e25239974fc13db66266b167b |  
spark.history.fs.eventLog.rolling.compaction.score.threshold | 3.0.0 | SPARK-30481 | a2fe73b83c0e7c61d1c83b236565a71e3d005a71#diff-6bddeb5e25239974fc13db66266b167b |  
spark.history.fs.driverlog.cleaner.enabled | 3.0.0 | SPARK-25118 | 5f11e8c4cb9a5db037ac239b8fcc97f3a746e772#diff-6bddeb5e25239974fc13db66266b167b |  
spark.history.fs.driverlog.cleaner.interval | 3.0.0 | SPARK-25118 | 5f11e8c4cb9a5db037ac239b8fcc97f3a746e772#diff-6bddeb5e25239974fc13db66266b167b |  
spark.history.fs.driverlog.cleaner.maxAge | 3.0.0 | SPARK-25118 | 5f11e8c4cb9a5db037ac239b8fcc97f3a746e772#diff-6bddeb5e25239974fc13db66266b167b |  
spark.history.ui.acls.enable | 1.0.1 | Spark 1489 | c8dd13221215275948b1a6913192d40e0c8cbadd#diff-b49b5b9c31ddb36a9061004b5b723058 |  
spark.history.ui.admin.acls | 2.1.1 | SPARK-19033 | 4ca1788805e4a0131ba8f0ccb7499ee0e0242837#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e |  
spark.history.ui.admin.acls.groups | 2.1.1 | SPARK-19033 | 4ca1788805e4a0131ba8f0ccb7499ee0e0242837#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e |  
spark.history.fs.numReplayThreads | 2.0.0 | SPARK-13988 | 6fdd0e32a6c3fdce1f3f7e1f8d252af05c419f7b#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e |  
spark.history.retainedApplications | 1.0.0 | SPARK-1276 | 9ae80bf9bd3e4da7443af97b41fe26aa5d35d70b#diff-b49b5b9c31ddb36a9061004b5b723058 |
spark.history.provider | 1.1.0 | SPARK-1768 | 21ddd7d1e9f8e2a726427f32422c31706a20ba3f#diff-a7befb99e7bd7e3ab5c46c2568aa5b3e |  
spark.history.kerberos.enabled | 1.0.1 | Spark-1490 | 866b03ef4d27b2160563b58d577de29ba6eb4442#diff-b49b5b9c31ddb36a9061004b5b723058 |  
spark.history.kerberos.principal | 1.0.1 | Spark-1490 | 866b03ef4d27b2160563b58d577de29ba6eb4442#diff-b49b5b9c31ddb36a9061004b5b723058 |  
spark.history.kerberos.keytab | 1.0.1 | Spark-1490 | 866b03ef4d27b2160563b58d577de29ba6eb4442#diff-b49b5b9c31ddb36a9061004b5b723058 |  
spark.history.custom.executor.log.url | 3.0.0 | SPARK-26311 | ae5b2a6a92be4986ef5b8062d7fb59318cff6430#diff-6bddeb5e25239974fc13db66266b167b |  
spark.history.custom.executor.log.url.applyIncompleteApplication | 3.0.0 | SPARK-26311 | ae5b2a6a92be4986ef5b8062d7fb59318cff6430#diff-6bddeb5e25239974fc13db66266b167b |  

### Why are the changes needed?
Supplemental configuration version information.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Exists UT

Closes #27751 from beliefer/add-version-to-history-config.

Authored-by: beliefer <beliefer@163.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-02 15:15:49 +09:00
beliefer 3beb4f875d [SPARK-30908][CORE][DOC] Add version information to the configuration of Kryo
### What changes were proposed in this pull request?
1.Add version information to the configuration of `Kryo`.
2.Update the docs of `Kryo`.

I sorted out some information show below.

Item name | Since version | JIRA ID | Commit ID | Note
-- | -- | -- | -- | --
spark.kryo.registrationRequired | 1.1.0 | SPARK-2102 | efdaeb111917dd0314f1d00ee8524bed1e2e21ca#diff-1f81c62dad0e2dfc387a974bb08c497c |  
spark.kryo.registrator | 0.5.0 | None | 91c07a33d90ab0357e8713507134ecef5c14e28a#diff-792ed56b3398163fa14e8578549d0d98 | This is not a release version, do we need to record it?
spark.kryo.classesToRegister | 1.2.0 | SPARK-1813 | 6bb56faea8d238ea22c2de33db93b1b39f492b3a#diff-529fc5c06b9731c1fbda6f3db60b16aa |  
spark.kryo.unsafe | 2.1.0 | SPARK-928 | bc167a2a53f5a795d089e8a884569b1b3e2cd439#diff-1f81c62dad0e2dfc387a974bb08c497c |  
spark.kryo.pool | 3.0.0 | SPARK-26466 | 38f030725c561979ca98b2a6cc7ca6c02a1f80ed#diff-a3c6b992784f9abeb9f3047d3dcf3ed9 |  
spark.kryo.referenceTracking | 0.8.0 | None | 0a8cc309211c62f8824d76618705c817edcf2424#diff-1f81c62dad0e2dfc387a974bb08c497c |  
spark.kryoserializer.buffer | 1.4.0 | SPARK-5932 | 2d222fb39dd978e5a33cde6ceb59307cbdf7b171#diff-1f81c62dad0e2dfc387a974bb08c497c |  
spark.kryoserializer.buffer.max | 1.4.0 | SPARK-5932 | 2d222fb39dd978e5a33cde6ceb59307cbdf7b171#diff-1f81c62dad0e2dfc387a974bb08c497c |  

### Why are the changes needed?
Supplemental configuration version information.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Exists UT

Closes #27734 from beliefer/add-version-to-kryo-config.

Authored-by: beliefer <beliefer@163.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-02 15:14:47 +09:00
Jiaan Geng a429ac83e4 [SPARK-30841][SQL][DOC][FOLLOW-UP] Add version information to the configuration of SQL
### What changes were proposed in this pull request?
This PR follows https://github.com/apache/spark/pull/27691
I sorted out some information show below.

Item name | Since version | JIRA ID | Commit ID | Note
-- | -- | -- | -- | --
spark.sql.orc.compression.codec | 2.3.0 | SPARK-21839 | d8f45408635d4fccac557cb1e877dfe9267fb326#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.orc.impl | 2.3.0 | SPARK-20728 | 326f1d6728a7734c228d8bfaa69442a1c7b92e9b#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.orc.enableVectorizedReader | 2.3.0 | SPARK-16060 | 60f6b994505e3f82091a04eed2dc0a9e8bd523ce#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.orc.columnarReaderBatchSize | 2.4.0 | SPARK-23188 | cc41245fa3f954f961541bf4b4275c28473042b8#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.orc.filterPushdown | 1.4.0 | SPARK-2883 | 65d71bd9fbfe6fe1b741c80fed72d6ae3d22b028#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.orc.mergeSchema | 3.0.0 | SPARK-11412 | 73183b3c8c2022846587f08e8dea5c387ed3b8d5#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.hive.verifyPartitionPath | 1.4.0 | Spark-5068 | 1f39a61118184e136f38381a9f3ba0b2d5d589d9#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.hive.metastorePartitionPruning | 1.5.0 | SPARK-9386 | ce89ff477aea6def68265ed218f6105680755c9a#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.hive.manageFilesourcePartitions | 2.1.1 | SPARK-19944 | 80ebca62cbdb7d5c8606e95a944164ab1a943694#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.hive.filesourcePartitionFileCacheSize | 2.1.1 | SPARK-19944 | 80ebca62cbdb7d5c8606e95a944164ab1a943694#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.hive.caseSensitiveInferenceMode | 2.1.1 | SPARK-19944 | 80ebca62cbdb7d5c8606e95a944164ab1a943694#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.optimizer.metadataOnly | 2.1.1 | SPARK-19944 | 80ebca62cbdb7d5c8606e95a944164ab1a943694#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.columnNameOfCorruptRecord | 1.2.0 | SPARK-3339 | 1c7f0ab302de9f82b1bd6da852d133823bc67c66#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.broadcastTimeout | 1.3.0 | SPARK-4269 | fa66ef6c97e87c9255b67b03836a4ba50598ebae#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.thriftserver.scheduler.pool | 1.1.1 | SPARK-3025 | 496f62d9a98067256d8a51fd1e7a485ff6492fa8#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.thriftServer.incrementalCollect | 2.0.3 | SPARK-18857 | c94288b57b5ce2232e58e35cada558d8d5b8ec6e#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.thriftserver.ui.retainedStatements | 1.4.0 | SPARK-5100 | 343d3bfafd449a0371feb6a88f78e07302fa7143#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.thriftserver.ui.retainedSessions | 1.4.0 | SPARK-5100 | 343d3bfafd449a0371feb6a88f78e07302fa7143#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.sources.default | 1.3.0 | SPARK-5658 | a21090ebe1ef7a709709300712de7d928a923244#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.hive.convertCTAS | 2.0.0 | SPARK-15646 | 5a835b99f9852b0c2a35f9c75a51d493474994ea#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.hive.gatherFastStats | 2.0.1 | SPARK-17063 | 3d283f6c9d9daef53fa4e90b0ead2a94710a37a7#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.sources.partitionColumnTypeInference.enabled | 1.5.0 | SPARK-7939 | 03ef6be9ce61a13dcd9d8c71298fb4be39119411#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.sources.bucketing.enabled | 2.0.0 | SPARK-13486 | 2b2c8c33236677c916541f956f7b94bba014a9ce#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.sources.bucketing.maxBuckets | 2.4.0 | SPARK-23997 | de46df549acee7fda56bb0871f444d2f3b49e582#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.crossJoin.enabled | 2.0.0 | SPARK-15425 | 4462da7071462084c5b55cc414c7faa0e1396a18#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.orderByOrdinal | 2.0.0 | SPARK-12789 | 2c5b18fb0fdeabd378dd97e91f72d1eac4e21cc7#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.groupByOrdinal | 2.0.0 | SPARK-13957 | 05f652d6c2bbd764a1dd5a45301811e14519486f#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.groupByAliases | 2.2.0 | SPARK-14471 | af3a1411a28796d4d9a100eefb093b1d91532754#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.sources.outputCommitterClass | 1.4.0 | SPARK-7567 | a385f4b8dd22e0e056569cffc4fa63047cb7c8f2#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.sources.commitProtocolClass | 2.1.1 | SPARK-19944 | 80ebca62cbdb7d5c8606e95a944164ab1a943694#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.sources.parallelPartitionDiscovery.threshold | 1.5.0 | SPARK-8125 | a1064df0ee3daf496800be84293345a10e1497d9#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.sources.parallelPartitionDiscovery.parallelism | 2.1.1 | SPARK-19944 | 80ebca62cbdb7d5c8606e95a944164ab1a943694#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.sources.ignoreDataLocality | 3.0.0 | SPARK-30812 | b76bc0b1b8b2abd00a84f805af90ca4c5925faaa#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.selfJoinAutoResolveAmbiguity | 1.4.0 | SPARK-6231 | e61083ccab7764d1929248490a3d2e83987241e0#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.analyzer.failAmbiguousSelfJoin | 3.0.0 | SPARK-30812 | b76bc0b1b8b2abd00a84f805af90ca4c5925faaa#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.retainGroupColumns | 1.4.0 | SPARK-7462 | 9c35f02b35fda80d6558573466735e79b3dd9124#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.pivotMaxValues | 1.6.0 | SPARK-8992 | 5940fc71d2a245cc6e50edb455c3dd3dbb8de43a#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.runSQLOnFiles | 1.6.0 | SPARK-11197 | f8c6bec65784de89b47e96a367d3f9790c1b3115#diff-41ef65b9ef5b518f77e2a03559893f4d
spark.sql.codegen.wholeStage | 2.0.0 | SPARK-13486 | 2b2c8c33236677c916541f956f7b94bba014a9ce#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.codegen.useIdInClassName | 2.3.1 | SPARK-23032 | 26a8b4e398ee6d1de06a5f3ac1d6d342c9b67d78#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.codegen.maxFields | 2.0.0 | SPARK-14224 and SPARK-14223 and SPARK-14310 | 5a4b11a901703464b9261dea0642d80cf8d4856c#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.codegen.factoryMode | 2.4.0 | SPARK-23711 | a40ffc656d62372da85e0fa932b67207839e7fde#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.codegen.fallback | 2.0.0 | SPARK-15759 | f0fa0a8946fb4bdf0f4697a8e389f49e98422871#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.codegen.logging.maxLines | 2.3.0 | SPARK-20871 | 2a53fbfce72b3faef020e39a1e8628d68bc95beb#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.codegen.hugeMethodLimit | 2.3.0 | SPARK-21871 | 4a779bdac3e75c17b7d36c5a009ba6c948fa9fb6#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.codegen.methodSplitThreshold | 3.0.0 | SPARK-25850 | e017cb39642a5039abd8ce8127ad41712901bdbc#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.codegen.splitConsumeFuncByOperator | 2.3.1 | SPARK-21717 | c79e771f8952e6773c3a84cc617145216feddbcf#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.files.maxPartitionBytes | 2.0.0 | SPARK-13664 | 17eec0a71ba8713c559d641e3f43a1be726b037c#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.files.openCostInBytes | 2.0.0 | SPARK-14259 | 400b2f863ffaa01a34a8dae1541c61526fef908b#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.files.ignoreCorruptFiles | 2.1.1 | SPARK-19944 | 80ebca62cbdb7d5c8606e95a944164ab1a943694#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.files.ignoreMissingFiles | 2.3.0 | SPARK-22366 | 8e9863531bebbd4d83eafcbc2b359b8bd0ac5734#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.files.maxRecordsPerFile | 2.2.0 | SPARK-19944 | 0ee38a39e43dd7ad9d50457e446ae36f64621a1b#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.exchange.reuse | 2.0.0 | SPARK-13523 | 3dc9ae2e158e5b51df6f799767946fe1d190156b#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.execution.reuseSubquery | 3.0.0 | SPARK-30812 | b76bc0b1b8b2abd00a84f805af90ca4c5925faaa#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.stateStore.providerClass | 2.3.0 | SPARK-20883 and SPARK-20376 | fa757ee1d41396ad8734a3f2dd045bb09bc82a2e#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.stateStore.minDeltasForSnapshot | 2.0.0 | SPARK-13809 | 8c826880f5eaa3221c4e9e7d3fece54e821a0b98#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.streaming.flatMapGroupsWithState.stateFormatVersion | 2.4.0 | SPARK-22187 | b3d88ac02940eff4c867d3acb79fe5ff9d724e83#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.checkpointLocation | 2.0.0 | SPARK-13985 | caea15214571d9b12dcf1553e5c1cc8b83a8ba5b#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.streaming.forceDeleteTempCheckpointLocation | 3.0.0 | SPARK-30812 | b76bc0b1b8b2abd00a84f805af90ca4c5925faaa#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.minBatchesToRetain | 2.1.1 | SPARK-19944 | 80ebca62cbdb7d5c8606e95a944164ab1a943694#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.maxBatchesToRetainInMemory | 2.4.0 | SPARK-24717 | 8b7d4f842fdc90b8d1c37080bdd9b5e1d070f5c0#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.aggregation.stateFormatVersion | 2.4.0 | SPARK-24763 | 6c5cb85856235efd464b109558896f81ae2c4c75#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.stopActiveRunOnRestart | 3.0.0 | SPARK-29568 | 363af16c72abe19fc5cc5b5bdf9d8dc34975f2ba#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.join.stateFormatVersion | 3.0.0 | SPARK-26154 | c941362cb94b24bdf48d4928a1a4dff1b13a1484#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.unsupportedOperationCheck | 2.0.0 | SPARK-14473 | 775cf17eaaae1a38efe47b282b1d6bbdb99bd759#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.variable.substitute | 2.0.0 | SPARK-14769 | 334c293ec0bcc2195d502c574ca40dbc4769d666#diff-32bb9518401c0948c5ea19377b5069ab
spark.sql.codegen.aggregate.map.twolevel.enabled | 2.3.0 | SPARK-22159 | d29d1e87995e02cb57ba3026c945c3cd66bb06e2#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.codegen.aggregate.map.vectorized.enable | 3.0.0 | SPARK-28257 | 42b80ae128ab1aa8a87c1376fe88e2cde52e6e4f#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.codegen.aggregate.splitAggregateFunc.enabled | 3.0.0 | SPARK-21870 | cb0cddffe9452937033e0e6b1fc0e600d2c787ad#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.view.maxNestedViewDepth | 2.2.0 | SPARK-19877 | ee36bc1c9043ead3c3ba4fba7e68c6c47ad7ae7a#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.commitProtocolClass | 2.1.0 | SPARK-19944 | 80ebca62cbdb7d5c8606e95a944164ab1a943694#diff-9a6b543db706f1a90f790783d6930a13
spark.sql.streaming.multipleWatermarkPolicy | 2.4.0 | SPARK-24730 | 6078b891da8fe7fc36579699473168ae7443284c#diff-9a6b543db706f1a90f790783d6930a13

### Why are the changes needed?
Supplemental configuration version information.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Exists UT

Closes #27730 from beliefer/add-version-to-sql-config-part-two.

Lead-authored-by: Jiaan Geng <beliefer@163.com>
Co-authored-by: beliefer <beliefer@163.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-02 15:13:58 +09:00
Huaxin Gao 0a5e9a12a7 [SPARK-30995][ML][DOCS] Latex doesn't work correctly in FMClassifier/FMRegressor Scala doc
### What changes were proposed in this pull request?
Latex doesn't work correctly

### Why are the changes needed?
Fix the doc to make Latex work

### Does this PR introduce any user-facing change?
Before fix:

![image](https://user-images.githubusercontent.com/13592258/75611743-0fa00a00-5ad2-11ea-9cc0-4b246b25d63d.png)

![image](https://user-images.githubusercontent.com/13592258/75611755-25adca80-5ad2-11ea-884d-b2792b714bd5.png)

After fix:

![image](https://user-images.githubusercontent.com/13592258/75611776-46762000-5ad2-11ea-838d-f7f6f93c8aec.png)

![image](https://user-images.githubusercontent.com/13592258/75611778-51c94b80-5ad2-11ea-85e4-8c7424268f52.png)

### How was this patch tested?
Manually build doc and test

Closes #27748 from huaxingao/fm_doc.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-02 10:33:26 +09:00
Maxim Gekk f828453e95 [SPARK-30988][SQL][TESTS] Add more edge-case exercising values to stats tests
### What changes were proposed in this pull request?
Added more test cases to `StatisticsCollectionTestBase`.

### Why are the changes needed?
To improve test coverage.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
By `StatisticsSuite` and `StatisticsCollectionSuite`.

Closes #27741 from MaxGekk/stat-collect-tests.

Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-02 10:30:00 +09:00
Josh Rosen f4499f678d [SPARK-29419][SQL] Fix Encoder thread-safety bug in createDataset(Seq)
### What changes were proposed in this pull request?

This PR fixes a thread-safety bug in `SparkSession.createDataset(Seq)`: if the caller-supplied `Encoder` is used in multiple threads then createDataset's usage of the encoder may lead to incorrect / corrupt results because the Encoder's internal mutable state will be updated from multiple threads.

Here is an example demonstrating the problem:

```scala
import org.apache.spark.sql._

val enc = implicitly[Encoder[(Int, Int)]]

val datasets = (1 to 100).par.map { _ =>
  val pairs = (1 to 100).map(x => (x, x))
  spark.createDataset(pairs)(enc)
}

datasets.reduce(_ union _).collect().foreach {
  pair => require(pair._1 == pair._2, s"Pair elements are mismatched: $pair")
}
```

Before this PR's change, the above example fails because Spark produces corrupted records where different input records' fields have been co-mingled.

This bug is similar to SPARK-22355 / #19577, a similar problem in `Dataset.collect()`.

The fix implemented here is based on #24735's updated version of the `Datataset.collect()` bugfix: use `.copy()`. For consistency, I used same [code comment](d841b33ba3/sql/core/src/main/scala/org/apache/spark/sql/Dataset.scala (L3414)) / explanation as that PR.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Tested manually using the example listed above.

Thanks to smcnamara-stripe for identifying this bug.

Closes #26076 from JoshRosen/SPARK-29419.

Authored-by: Josh Rosen <rosenville@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-02 10:19:12 +09:00
iRakson 92a5ae2ae4 [SPARK-30234][SQL][FOLLOWUP] Rename spark.sql.legacy.addDirectory.recursive.enabled to spark.sql.legacy.addSingleFileInAddFile
### What changes were proposed in this pull request?
Rename `spark.sql.legacy.addDirectory.recursive.enabled` to `spark.sql.legacy.addSingleFileInAddFile`

### Why are the changes needed?
To follow the naming convention

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Existing UTs.

Closes #27725 from iRakson/SPARK-30234_CONFIG.

Authored-by: iRakson <raksonrakesh@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-03-01 10:55:41 +09:00
Thomas Graves 0e2ca11d80 [SPARK-29149][YARN] Update YARN cluster manager For Stage Level Scheduling
### What changes were proposed in this pull request?

Yarn side changes for Stage level scheduling.  The previous PR for dynamic allocation changes was https://github.com/apache/spark/pull/27313

Modified the data structures to store things on a per ResourceProfile basis.
 I tried to keep the code changes to a minimum, the main loop that requests just goes through each Resourceprofile and the logic inside for each one stayed very close to the same.
On submission we now have to give each ResourceProfile a separate yarn Priority because yarn doesn't support asking for containers with different resources at the same Priority. We just use the profile id as the priority level.
Using a different Priority actually makes things easier when the containers come back to match them again which ResourceProfile they were requested for.
The expectation is that yarn will only give you a container with resource amounts you requested or more. It should never give you a container if it doesn't satisfy your resource requests.

If you want to see the full feature changes you can look at https://github.com/apache/spark/pull/27053/files for reference

### Why are the changes needed?

For stage level scheduling YARN support.

### Does this PR introduce any user-facing change?

no

### How was this patch tested?

Tested manually on YARN cluster and then unit tests.

Closes #27583 from tgravescs/SPARK-29149.

Authored-by: Thomas Graves <tgraves@nvidia.com>
Signed-off-by: Thomas Graves <tgraves@apache.org>
2020-02-28 15:23:33 -06:00
Thomas Graves 6c0c41fa0d [SPARK-30987][CORE] Increase the timeout on local-cluster waitUntilExecutorsUp calls
### What changes were proposed in this pull request?

The ResourceDiscoveryPlugin tests intermittently timeout. They are timing out on just bringing up the local-cluster. I am not able to reproduce locally.  I suspect the jenkins boxes are overloaded and taking longer then 10 seconds. There was another jira SPARK-29139 that increased timeout for some other of these as well. So try increasing the timeout to 60 seconds.

Examples of timeouts:
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/119030/testReport/
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/119005/testReport/
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/119029/testReport/

### Why are the changes needed?

tests should no longer intermittently fail.

### Does this PR introduce any user-facing change?

no
### How was this patch tested?

unit tests ran.

Closes #27738 from tgravescs/SPARK-30987.

Authored-by: Thomas Graves <tgraves@nvidia.com>
Signed-off-by: Xingbo Jiang <xingbo.jiang@databricks.com>
2020-02-28 11:43:05 -08:00
Huaxin Gao 961c539a67 [SPARK-28998][SQL][FOLLOW-UP] Remove unnecessary MiMa excludes
### What changes were proposed in this pull request?
Remove the cases for ```MissingTypesProblem```, ```InheritedNewAbstractMethodProblem```, ```DirectMissingMethodProblem``` and ```ReversedMissingMethodProblem```.

### Why are the changes needed?
After the changes, we don't have ```org.apache.spark.sql.sources.v2```  any more, so the only problem we can get is ```MissingClassProblem```

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Manually tested

Closes #27731 from huaxingao/spark-28998-followup.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2020-02-28 11:22:08 -08:00
yi.wu 3b69796a89 [SPARK-30947][CORE] Log better message when accelerate resource is empty
### What changes were proposed in this pull request?

Try to log better message when accelerate resource is empty.

### Why are the changes needed?

Otherwise, it's weird to see cpu/memory resources after logging **that** resources is empty:

```
20/02/25 21:47:55 INFO ResourceUtils: ==============================================================
20/02/25 21:47:55 INFO ResourceUtils: Resources for spark.driver:

20/02/25 21:47:55 INFO ResourceUtils: ==============================================================
20/02/25 21:47:55 INFO SparkContext: Submitted application: Spark shell
20/02/25 21:47:55 INFO ResourceProfile: Default ResourceProfile created, executor resources: Map(cores -> name: cores, amount: 1, script: , vendor: , memory -> name: memory, amount: 1024, script: , vendor: ), task resources: Map(cpus -> name: cpus, amount: 1.0)
20/02/25 21:47:55 INFO ResourceProfile: Limiting resource is  at -1 tasks per executor
```

### Does this PR introduce any user-facing change?

NO.

### How was this patch tested?

Tested manually.

Closes #27693 from Ngone51/dont_log_resource.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Xingbo Jiang <xingbo.jiang@databricks.com>
2020-02-28 10:54:38 -08:00
iRakson a40a2f8338 [SPARK-27619][SQL][FOLLOWUP] Rename 'spark.sql.legacy.useHashOnMapType' to 'spark.sql.legacy.allowHashOnMapType'
### What changes were proposed in this pull request?
Renamed configuration from `spark.sql.legacy.useHashOnMapType` to `spark.sql.legacy.allowHashOnMapType`.

### Why are the changes needed?
Better readability of configuration.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Existing UTs.

Closes #27719 from iRakson/SPARK-27619_FOLLOWUP.

Authored-by: iRakson <raksonrakesh@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-02-28 22:57:50 +08:00
Eric Wu eba2076ca3 [SPARK-30842][SQL] Adjust abstraction structure for join operators
### What changes were proposed in this pull request?
Currently the join operators are not well abstracted, since there are lot of common logic. A trait can be created for easier pattern matching and other future handiness. This is a follow-up PR based on comment
https://github.com/apache/spark/pull/27509#discussion_r379613391 .

This PR refined from the following aspects:
1. Refined structure of all physical join operators
2. Add missing joinType field for CartesianProductExec operator
3. Refined codes related to Explain Formatted

The EXPLAIN FORMATTED changes are
1. Converge all join operator `verboseStringWithOperatorId` implementations to `BaseJoinExec`. Join condition displayed, and join keys displayed if it’s not empty.
2. `#1` will add Join condition to `BroadcastNestedLoopJoinExec`.
3. `#1` will **NOT** affect `CartesianProductExec`,`SortMergeJoin` and `HashJoin`s, since they already got there override implementation before.
4. Converge all join operator `simpleStringWithNodeId` to `BaseJoinExec`, which will enhance the one line description for `CartesianProductExec` with `JoinType` added.
5. Override `simpleStringWithNodeId` in `BroadcastNestedLoopJoinExec` to show `BuildSide`, which was only done for `HashJoin`s before.

### Why are the changes needed?
Make the code consistent with other operators and for future handiness of join operators.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Existing tests

Closes #27595 from Eric5553/RefineJoin.

Authored-by: Eric Wu <492960551@qq.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-02-28 18:42:15 +08:00
zhengruifeng 14bb639c55 [SPARK-30938][ML][MLLIB] BinaryClassificationMetrics optimization
### What changes were proposed in this pull request?
1, avoid `Iterator.grouped(size: Int)`, which need to maintain an arraybuffer of `size`
2, keep the number of partitions in curve computation

### Why are the changes needed?
1, `BinaryClassificationMetrics` tend to fail (OOM) when `grouping=count/numBins` is too large, due to `Iterator.grouped(size: Int)` need to maintain an arraybuffer with `size` entries, however, in `BinaryClassificationMetrics` we do not need to maintain such a big array;
2, make sizes of partitions more even;

This PR computes metrics more stable and a littler faster;

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
existing testsuites

Closes #27682 from zhengruifeng/grouped_opt.

Authored-by: zhengruifeng <ruifengz@foxmail.com>
Signed-off-by: zhengruifeng <ruifengz@foxmail.com>
2020-02-28 16:55:24 +08:00
Kent Yao 1383bd459a [SPARK-30970][K8S][CORE] Fix NPE while resolving k8s master url
### What changes were proposed in this pull request?

```
bin/spark-sql --master  k8s:///https://kubernetes.docker.internal:6443 --conf spark.kubernetes.container.image=yaooqinn/spark:v2.4.4
Exception in thread "main" java.lang.NullPointerException
	at org.apache.spark.util.Utils$.checkAndGetK8sMasterUrl(Utils.scala:2739)
	at org.apache.spark.deploy.SparkSubmit.prepareSubmitEnvironment(SparkSubmit.scala:261)
	at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:774)
	at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:161)
	at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:184)
	at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:86)
	at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:920)
	at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:929)
	at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
```
Althrough `k8s:///https://kubernetes.docker.internal:6443` is a wrong master url but should not throw npe
The `case null` will never be touched.
3f4060c340/core/src/main/scala/org/apache/spark/util/Utils.scala (L2772-L2776)

### Why are the changes needed?

bug fix

### Does this PR introduce any user-facing change?

no

### How was this patch tested?

add ut case

Closes #27721 from yaooqinn/SPARK-30970.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2020-02-28 00:01:20 -08:00
Huaxin Gao c0d4cc3657 [MINOR][SQL] Remove unnecessary MiMa excludes
### What changes were proposed in this pull request?
I found a few unnecessary MiMa excludes when auditing SQL binary incompatible changes.

### Why are the changes needed?
These MiMa excludes are not required any more, so remove.

### Does this PR introduce any user-facing change?
No

### How was this patch tested?
Manually tested

Closes #27729 from huaxingao/mima.

Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-02-28 15:18:25 +09:00
Wenchen Fan f21894e5fa [SPARK-30902][SQL] Default table provider should be decided by catalog implementations
### What changes were proposed in this pull request?

When `CREATE TABLE` SQL statement does not specify the provider, leave it to the catalog implementations to decide.

### Why are the changes needed?

It's super weird if we set the default provider to parquet when creating a table in a JDBC catalog.

### Does this PR introduce any user-facing change?

Yes, v2 catalog will not see a "provider" property in table properties if it's not specified in `CREATE TABLE` SQL statement. V2 catalog is new in 3.0.

### How was this patch tested?

new tests

Closes #27650 from cloud-fan/create_table.

Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-02-28 15:14:23 +09:00
zero323 7de33f56e8 [SPARK-30681][PYSPARK][SQL] Add higher order functions API to PySpark
### What changes were proposed in this pull request?

This PR add Python API for invoking following higher functions:

- `transform`
- `exists`
- `forall`
- `filter`
- `aggregate`
- `zip_with`
- `transform_keys`
- `transform_values`
- `map_filter`
- `map_zip_with`

to `pyspark.sql`. Each of these accepts plain Python functions of one of the following types

- `(Column) -> Column: ...`
- `(Column, Column) -> Column: ...`
- `(Column, Column, Column) -> Column: ...`

Internally this proposal piggbacks on objects supporting Scala implementation ([SPARK-27297](https://issues.apache.org/jira/browse/SPARK-27297)) by:

1. Creating  required `UnresolvedNamedLambdaVariables`  exposing these as PySpark `Columns`
2. Invoking Python function with these columns as arguments.
3. Using the result, and underlying JVM objects from 1., to create `expressions.LambdaFunction` which is passed to desired expression, and repacked as Python `Column`.

### Why are the changes needed?

Currently higher order functions are available only using SQL and Scala API and can use only SQL expressions

```python
df.selectExpr("transform(values, x -> x + 1)")
```

This works reasonably well for simple functions, but can get really ugly with complex functions (complex functions, casts), resulting objects are somewhat verbose and we don't get any IDE support.  Additionally DSL used, though  very simple, is not documented.

With changes propose here, above query could be rewritten as:

```python
df.select(transform("values", lambda x: x + 1))
```

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

- For positive cases this PR adds doctest strings covering possible usage patterns.
- For negative cases (unsupported function types) this PR adds unit tests.

### Notes

If approved, the same approach can be used in SparkR.

Closes #27406 from zero323/SPARK-30681.

Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-02-28 12:59:39 +09:00
zero323 c467961e8a [SPARK-30682][SPARKR][SQL] Add SparkR interface for higher order functions
### What changes were proposed in this pull request?

This PR add R API for invoking following higher functions:

- `transform` -> `array_transform` (to avoid conflict with `base::transform`).
- `exists` -> `array_exists` (to avoid conflict with `base::exists`).
- `forall` -> `array_forall` (no conflicts, renamed for consistency)
- `filter` -> `array_filter` (to avoid conflict with `stats::filter`).
- `aggregate` -> `array_aggregate` (to avoid conflict with `stats::transform`).
- `zip_with` -> `arrays_zip_with` (no conflicts, renamed for consistency)
- `transform_keys`
- `transform_values`
- `map_filter`
- `map_zip_with`

Overall implementation follows the same pattern as proposed for PySpark (#27406) and reuses object supporting Scala implementation (SPARK-27297).

### Why are the changes needed?

Currently higher order functions are available only using SQL and Scala API and can use only SQL expressions:

```r
select(df, expr("transform(xs, x -> x + 1)")
```

This is error-prone, and hard to do right, when complex logic is used (`when` / `otherwise`, complex objects).

If this PR is accepted, above function could be simply rewritten as:

```r
select(df, transform("xs", function(x) x + 1))
```

### Does this PR introduce any user-facing change?

No (but new user-facing functions are added).

### How was this patch tested?

Added new unit tests.

Closes #27433 from zero323/SPARK-30682.

Authored-by: zero323 <mszymkiewicz@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-02-28 12:58:56 +09:00
yi.wu a1d2ce90b0 [SPARK-30972][SQL] PruneHiveTablePartitions should be executed as earlyScanPushDownRules
### What changes were proposed in this pull request?

Make rule `PruneHiveTablePartitions` to execute as `earlyScanPushDownRules`.

### Why are the changes needed?

Similar to rule `PruneFileSourcePartitions`, `PruneHiveTablePartitions` should also be executed as earlyScanPushDownRules to eliminate the impact on statistic computation later.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Pass Jenkins.

Closes #27723 from Ngone51/early_hive_prune.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-02-28 11:50:20 +08:00
Liang-Chi Hsieh ba032acf95 [SPARK-30955][SQL] Exclude Generate output when aliasing in nested column pruning
### What changes were proposed in this pull request?

When aliasing in nested column pruning in Project on top of Generate, we should exclude Generate outputs.

### Why are the changes needed?

Right now we would prune nested columns in Project on top of Generate. It is possible that referred nested columns are from Generate's outputs, not from its child. To address that case, we should exclude Generate outputs when aliasing in nested column pruning.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Unit test.

Closes #27702 from viirya/fix-nested-pruning.

Lead-authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Co-authored-by: Liang-Chi Hsieh <liangchi@uber.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-02-28 12:29:46 +09:00
Takeshi Yamamuro 314442a3d5 [SQL][MINOR][TESTS] Remove GivenWhenThen trait from HiveComparisonTest
### What changes were proposed in this pull request?

This pr intends to remove non-used trait, `GivenWhenThen`, from `HiveComparisonTest`.

### Why are the changes needed?

For better code.

### Does this PR introduce any user-facing change?

No

### How was this patch tested?

Existing tests.

Closes #27726 from maropu/MINOR-20200228.

Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
2020-02-27 17:19:27 -08:00
Dongjoon Hyun 3995728c3c [SPARK-30968][BUILD] Upgrade aws-java-sdk-sts to 1.11.655
### What changes were proposed in this pull request?

This PR aims to upgrade `aws-java-sdk-sts` to `1.11.655`.

### Why are the changes needed?

[SPARK-29677](https://github.com/apache/spark/pull/26333) upgrades AWS Kinesis Client to 1.12.0 for Apache Spark 2.4.5 and 3.0.0.

Since AWS Kinesis Client 1.12.0 is using AWS SDK 1.11.665, `aws-java-sdk-sts` should be consistent with Kinesis client dependency.
- https://github.com/awslabs/amazon-kinesis-client/releases/tag/v1.12.0

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

Pass the Jenkins.

Closes #27720 from dongjoon-hyun/SPARK-30968.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2020-02-27 17:05:56 -08:00
Tigran Saluev 6f4a2e4c99 [MINOR][ML] Fix confusing error message in VectorAssembler
### What changes were proposed in this pull request?

When VectorAssembler encounters a NULL with handleInvalid="error", it throws an exception. This exception, though, has a typo making it confusing. Yet apparently, this same exception for NaN values is fine. Fixed it to look like the right one.

### Why are the changes needed?

Encountering this error with such message was very confusing! I hope to save time of fellow engineers by improving it.

### Does this PR introduce any user-facing change?

No.

### How was this patch tested?

It's just an error message...

Closes #27709 from Saluev/patch-1.

Authored-by: Tigran Saluev <tigran@saluev.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2020-02-27 11:05:53 -06:00
Kent Yao 2d2706cb86 [SPARK-30956][SQL][TESTS] Use intercept instead of try-catch to assert failures in IntervalUtilsSuite
### What changes were proposed in this pull request?

In this PR, I addressed the comment from https://github.com/apache/spark/pull/27672#discussion_r383719562 to use `intercept` instead of `try-catch` block to assert  failures in the IntervalUtilsSuite

### Why are the changes needed?

improve tests
### Does this PR introduce any user-facing change?

no

### How was this patch tested?

Nah

Closes #27700 from yaooqinn/intervaltest.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Takeshi Yamamuro <yamamuro@apache.org>
2020-02-27 23:12:35 +09:00
yi.wu 22dfd15a45 [SPARK-30937][DOC] Group Hive upgrade guides together
### What changes were proposed in this pull request?

This PR groups all hive upgrade related migration guides inside Spark 3.0 together.

Also add another behavior change of `ScriptTransform` in the new Hive section.

### Why are the changes needed?

Make the doc more clearly to user.

### Does this PR introduce any user-facing change?

No, new doc for Spark 3.0.

### How was this patch tested?

N/A.

Closes #27670 from Ngone51/hive_migration.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-02-27 21:29:42 +08:00