## What changes were proposed in this pull request?
This pr fixed a compilation error of TPCDS `q75`/`q77` caused by #19813;
```
java.util.concurrent.ExecutionException: org.codehaus.commons.compiler.CompileException: File 'generated.java', Line 371, Column 16: failed to compile: org.codehaus.commons.compiler.CompileException: File 'generated.java', Line 371, Column 16: Expression "bhj_matched" is not an rvalue
at com.google.common.util.concurrent.AbstractFuture$Sync.getValue(AbstractFuture.java:306)
at com.google.common.util.concurrent.AbstractFuture$Sync.get(AbstractFuture.java:293)
at com.google.common.util.concurrent.AbstractFuture.get(AbstractFuture.java:116)
at com.google.common.util.concurrent.Uninterruptibles.getUninterruptibly(Uninterruptibles.java:135)
```
## How was this patch tested?
Manually checked `q75`/`q77` can be properly compiled
Author: Takeshi Yamamuro <yamamuro@apache.org>
Closes#19969 from maropu/SPARK-22600-FOLLOWUP.
Use a semaphore to synchronize the tasks with the listener code
that is trying to cancel the job or stage, so that the listener
won't try to cancel a job or stage that has already finished.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#19956 from vanzin/SPARK-22764.
## What changes were proposed in this pull request?
In SPARK-22550 which fixes 64KB JVM bytecode limit problem with elt, `buildCodeBlocks` is used to split codes. However, we should use `splitExpressionsWithCurrentInputs` because it considers both normal and wholestage codgen (it is not supported yet, so it simply doesn't split the codes).
## How was this patch tested?
Existing tests.
Author: Liang-Chi Hsieh <viirya@gmail.com>
Closes#19964 from viirya/SPARK-22772.
## What changes were proposed in this pull request?
PR closed with all the comments -> https://github.com/apache/spark/pull/19793
It solves the problem when submitting a wrong CreateSubmissionRequest to Spark Dispatcher was causing a bad state of Dispatcher and making it inactive as a Mesos framework.
https://issues.apache.org/jira/browse/SPARK-22574
## How was this patch tested?
All spark test passed successfully.
It was tested sending a wrong request (without appArgs) before and after the change. The point is easy, check if the value is null before being accessed.
This was before the change, leaving the dispatcher inactive:
```
Exception in thread "Thread-22" java.lang.NullPointerException
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.getDriverCommandValue(MesosClusterScheduler.scala:444)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.buildDriverCommand(MesosClusterScheduler.scala:451)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.org$apache$spark$scheduler$cluster$mesos$MesosClusterScheduler$$createTaskInfo(MesosClusterScheduler.scala:538)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler$$anonfun$scheduleTasks$1.apply(MesosClusterScheduler.scala:570)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler$$anonfun$scheduleTasks$1.apply(MesosClusterScheduler.scala:555)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.scheduleTasks(MesosClusterScheduler.scala:555)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.resourceOffers(MesosClusterScheduler.scala:621)
```
And after:
```
"message" : "Malformed request: org.apache.spark.deploy.rest.SubmitRestProtocolException: Validation of message CreateSubmissionRequest failed!\n\torg.apache.spark.deploy.rest.SubmitRestProtocolMessage.validate(SubmitRestProtocolMessage.scala:70)\n\torg.apache.spark.deploy.rest.SubmitRequestServlet.doPost(RestSubmissionServer.scala:272)\n\tjavax.servlet.http.HttpServlet.service(HttpServlet.java:707)\n\tjavax.servlet.http.HttpServlet.service(HttpServlet.java:790)\n\torg.spark_project.jetty.servlet.ServletHolder.handle(ServletHolder.java:845)\n\torg.spark_project.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:583)\n\torg.spark_project.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1180)\n\torg.spark_project.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)\n\torg.spark_project.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1112)\n\torg.spark_project.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)\n\torg.spark_project.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:134)\n\torg.spark_project.jetty.server.Server.handle(Server.java:524)\n\torg.spark_project.jetty.server.HttpChannel.handle(HttpChannel.java:319)\n\torg.spark_project.jetty.server.HttpConnection.onFillable(HttpConnection.java:253)\n\torg.spark_project.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)\n\torg.spark_project.jetty.io.FillInterest.fillable(FillInterest.java:95)\n\torg.spark_project.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:93)\n\torg.spark_project.jetty.util.thread.strategy.ExecuteProduceConsume.executeProduceConsume(ExecuteProduceConsume.java:303)\n\torg.spark_project.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:148)\n\torg.spark_project.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:136)\n\torg.spark_project.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:671)\n\torg.spark_project.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:589)\n\tjava.lang.Thread.run(Thread.java:745)"
```
Author: German Schiavon <germanschiavon@gmail.com>
Closes#19966 from Gschiavon/fix-submission-request.
## What changes were proposed in this pull request?
While spark code changes, there are new events in event log: #19649
And we used to maintain a whitelist to avoid exceptions: #15663
Currently Spark history server will stop parsing on unknown events or unrecognized properties. We may still see part of the UI data.
For better compatibility, we can ignore unknown events and parse through the log file.
## How was this patch tested?
Unit test
Author: Wang Gengliang <ltnwgl@gmail.com>
Closes#19953 from gengliangwang/ReplayListenerBus.
… than spark.network.timeout or not
## What changes were proposed in this pull request?
If spark.executor.heartbeatInterval bigger than spark.network.timeout,it will almost always cause exception below.
`Job aborted due to stage failure: Task 4763 in stage 3.0 failed 4 times, most recent failure: Lost task 4763.3 in stage 3.0 (TID 22383, executor id: 4761, host: xxx): ExecutorLostFailure (executor 4761 exited caused by one of the running tasks) Reason: Executor heartbeat timed out after 154022 ms`
Since many users do not get that point.He will set spark.executor.heartbeatInterval incorrectly.
This patch check this case when submit applications.
## How was this patch tested?
Test in cluster
Author: zhoukang <zhoukang199191@gmail.com>
Closes#19942 from caneGuy/zhoukang/check-heartbeat.
## What changes were proposed in this pull request?
We should not operate on `references` directly in `Expression.doGenCode`, instead we should use the high-level API `addReferenceObj`.
## How was this patch tested?
existing tests
Author: Wenchen Fan <wenchen@databricks.com>
Closes#19962 from cloud-fan/codegen.
## What changes were proposed in this pull request?
Currently Spark can read table stats (e.g. `totalSize, numRows`) from Hive, we can also support to read partition stats from Hive using the same logic.
## How was this patch tested?
Added a new test case and modified an existing test case.
Author: Zhenhua Wang <wangzhenhua@huawei.com>
Author: Zhenhua Wang <wzh_zju@163.com>
Closes#19932 from wzhfy/read_hive_partition_stats.
## What changes were proposed in this pull request?
See jira description for the bug : https://issues.apache.org/jira/browse/SPARK-22042
Fix done in this PR is: In `EnsureRequirements`, apply `ReorderJoinPredicates` over the input tree before doing its core logic. Since the tree is transformed bottom-up, we can assure that the children are resolved before doing `ReorderJoinPredicates`.
Theoretically this will guarantee to cover all such cases while keeping the code simple. My small grudge is for cosmetic reasons. This PR will look weird given that we don't call rules from other rules (not to my knowledge). I could have moved all the logic for `ReorderJoinPredicates` into `EnsureRequirements` but that will make it a but crowded. I am happy to discuss if there are better options.
## How was this patch tested?
Added a new test case
Author: Tejas Patil <tejasp@fb.com>
Closes#19257 from tejasapatil/SPARK-22042_ReorderJoinPredicates.
## What changes were proposed in this pull request?
only drops the rows containing NaN in the input columns
## How was this patch tested?
existing tests and added tests
Author: Ruifeng Zheng <ruifengz@foxmail.com>
Author: Zheng RuiFeng <ruifengz@foxmail.com>
Closes#19894 from zhengruifeng/bucketizer_nan.
## What changes were proposed in this pull request?
some code cleanup/refactor and naming improvement.
## How was this patch tested?
existing tests
Author: Wenchen Fan <wenchen@databricks.com>
Closes#19952 from cloud-fan/minor.
## What changes were proposed in this pull request?
The query execution/optimization does not guarantee the expressions are evaluated in order. We only can combine them if and only if both are deterministic. We need to update the optimizer rule: CombineFilters.
## How was this patch tested?
Updated the existing tests.
Author: gatorsmile <gatorsmile@gmail.com>
Closes#19947 from gatorsmile/combineFilters.
## What changes were proposed in this pull request?
As a follow-up of #19948 , this PR moves the test case and adds comments.
## How was this patch tested?
Pass the Jenkins.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19960 from dongjoon-hyun/SPARK-19809-2.
## What changes were proposed in this pull request?
We need to add some helper code to make testing ML transformers & models easier with streaming data. These tests might help us catch any remaining issues and we could encourage future PRs to use these tests to prevent new Models & Transformers from having issues.
I add a `MLTest` trait which extends `StreamTest` trait, and override `createSparkSession`. So ML testsuite can only extend `MLTest`, to use both ML & Stream test util functions.
I only modify one testcase in `LinearRegressionSuite`, for first pass review.
Link to #19746
## How was this patch tested?
`MLTestSuite` added.
Author: WeichenXu <weichen.xu@databricks.com>
Closes#19843 from WeichenXu123/ml_stream_test_helper.
## What changes were proposed in this pull request?
SPARK-22543 fixes the 64kb compile error for deeply nested expression for non-wholestage codegen. This PR extends it to support wholestage codegen.
This patch brings some util methods in to extract necessary parameters for an expression if it is split to a function.
The util methods are put in object `ExpressionCodegen` under `codegen`. The main entry is `getExpressionInputParams` which returns all necessary parameters to evaluate the given expression in a split function.
This util methods can be used to split expressions too. This is a TODO item later.
## How was this patch tested?
Added test.
Author: Liang-Chi Hsieh <viirya@gmail.com>
Closes#19813 from viirya/reduce-expr-code-for-wholestage.
## What changes were proposed in this pull request?
We have two methods to reference an object `addReferenceMinorObj` and `addReferenceObj `. The latter creates a new global variable, which means new entries in the constant pool.
The PR unifies the two method in a single `addReferenceObj` which returns the code to access the object in the `references` array and doesn't add new mutable states.
## How was this patch tested?
added UTs.
Author: Marco Gaido <mgaido@hortonworks.com>
Closes#19916 from mgaido91/SPARK-22716.
## What changes were proposed in this pull request?
#19208 modified ```sharedParams.scala```, but didn't generated by ```SharedParamsCodeGen.scala```. This involves mismatch between them.
## How was this patch tested?
Existing test.
Author: Yanbo Liang <ybliang8@gmail.com>
Closes#19958 from yanboliang/spark-21087.
## What changes were proposed in this pull request?
Until 2.2.1, Spark raises `NullPointerException` on zero-size ORC files. Usually, these zero-size ORC files are generated by 3rd-party apps like Flume.
```scala
scala> sql("create table empty_orc(a int) stored as orc location '/tmp/empty_orc'")
$ touch /tmp/empty_orc/zero.orc
scala> sql("select * from empty_orc").show
java.lang.RuntimeException: serious problem at
org.apache.hadoop.hive.ql.io.orc.OrcInputFormat.generateSplitsInfo(OrcInputFormat.java:1021)
...
Caused by: java.lang.NullPointerException at
org.apache.hadoop.hive.ql.io.orc.OrcInputFormat$BISplitStrategy.getSplits(OrcInputFormat.java:560)
```
After [SPARK-22279](https://github.com/apache/spark/pull/19499), Apache Spark with the default configuration doesn't have this bug. Although Hive 1.2.1 library code path still has the problem, we had better have a test coverage on what we have now in order to prevent future regression on it.
## How was this patch tested?
Pass a newly added test case.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19948 from dongjoon-hyun/SPARK-19809-EMPTY-FILE.
## What changes were proposed in this pull request?
It solves the problem when submitting a wrong CreateSubmissionRequest to Spark Dispatcher was causing a bad state of Dispatcher and making it inactive as a Mesos framework.
https://issues.apache.org/jira/browse/SPARK-22574
## How was this patch tested?
All spark test passed successfully.
It was tested sending a wrong request (without appArgs) before and after the change. The point is easy, check if the value is null before being accessed.
This was before the change, leaving the dispatcher inactive:
```
Exception in thread "Thread-22" java.lang.NullPointerException
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.getDriverCommandValue(MesosClusterScheduler.scala:444)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.buildDriverCommand(MesosClusterScheduler.scala:451)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.org$apache$spark$scheduler$cluster$mesos$MesosClusterScheduler$$createTaskInfo(MesosClusterScheduler.scala:538)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler$$anonfun$scheduleTasks$1.apply(MesosClusterScheduler.scala:570)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler$$anonfun$scheduleTasks$1.apply(MesosClusterScheduler.scala:555)
at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:48)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.scheduleTasks(MesosClusterScheduler.scala:555)
at org.apache.spark.scheduler.cluster.mesos.MesosClusterScheduler.resourceOffers(MesosClusterScheduler.scala:621)
```
And after:
```
"message" : "Malformed request: org.apache.spark.deploy.rest.SubmitRestProtocolException: Validation of message CreateSubmissionRequest failed!\n\torg.apache.spark.deploy.rest.SubmitRestProtocolMessage.validate(SubmitRestProtocolMessage.scala:70)\n\torg.apache.spark.deploy.rest.SubmitRequestServlet.doPost(RestSubmissionServer.scala:272)\n\tjavax.servlet.http.HttpServlet.service(HttpServlet.java:707)\n\tjavax.servlet.http.HttpServlet.service(HttpServlet.java:790)\n\torg.spark_project.jetty.servlet.ServletHolder.handle(ServletHolder.java:845)\n\torg.spark_project.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:583)\n\torg.spark_project.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1180)\n\torg.spark_project.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)\n\torg.spark_project.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1112)\n\torg.spark_project.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)\n\torg.spark_project.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:134)\n\torg.spark_project.jetty.server.Server.handle(Server.java:524)\n\torg.spark_project.jetty.server.HttpChannel.handle(HttpChannel.java:319)\n\torg.spark_project.jetty.server.HttpConnection.onFillable(HttpConnection.java:253)\n\torg.spark_project.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)\n\torg.spark_project.jetty.io.FillInterest.fillable(FillInterest.java:95)\n\torg.spark_project.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:93)\n\torg.spark_project.jetty.util.thread.strategy.ExecuteProduceConsume.executeProduceConsume(ExecuteProduceConsume.java:303)\n\torg.spark_project.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:148)\n\torg.spark_project.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:136)\n\torg.spark_project.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:671)\n\torg.spark_project.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:589)\n\tjava.lang.Thread.run(Thread.java:745)"
```
Author: German Schiavon <germanschiavon@gmail.com>
Closes#19793 from Gschiavon/fix-submission-request.
## What changes were proposed in this pull request?
jira: https://issues.apache.org/jira/browse/SPARK-22289
add JSON encoding/decoding for Param[Matrix].
The issue was reported by Nic Eggert during saving LR model with LowerBoundsOnCoefficients.
There're two ways to resolve this as I see:
1. Support save/load on LogisticRegressionParams, and also adjust the save/load in LogisticRegression and LogisticRegressionModel.
2. Directly support Matrix in Param.jsonEncode, similar to what we have done for Vector.
After some discussion in jira, we prefer the fix to support Matrix as a valid Param type, for simplicity and convenience for other classes.
Note that in the implementation, I added a "class" field in the JSON object to match different JSON converters when loading, which is for preciseness and future extension.
## How was this patch tested?
new unit test to cover the LR case and JsonMatrixConverter
Author: Yuhao Yang <yuhao.yang@intel.com>
Closes#19525 from hhbyyh/lrsave.
In order to enable truncate for PostgreSQL databases in Spark JDBC, a change is needed to the query used for truncating a PostgreSQL table. By default, PostgreSQL will automatically truncate any descendant tables if a TRUNCATE query is executed. As this may result in (unwanted) side-effects, the query used for the truncate should be specified separately for PostgreSQL, specifying only to TRUNCATE a single table.
## What changes were proposed in this pull request?
Add `getTruncateQuery` function to `JdbcDialect.scala`, with default query. Overridden this function for PostgreSQL to only truncate a single table. Also sets `isCascadingTruncateTable` to false, as this will allow truncates for PostgreSQL.
## How was this patch tested?
Existing tests all pass. Added test for `getTruncateQuery`
Author: Daniel van der Ende <daniel.vanderende@gmail.com>
Closes#19911 from danielvdende/SPARK-22717.
## What changes were proposed in this pull request?
This PR proposes to print warnings before creating local by `java.io.File`.
I think we can't just simply disallow and throw an exception for such cases of `hdfs:/tmp/foo` case because it might break compatibility. Note that `hdfs:/tmp/foo` creates a directory called `hdfs:/`.
There were many discussion here about whether we should support this in other file systems or not; however, since the JIRA targets "Spark's local dir should accept only local paths", here I tried to resolve it by simply printing warnings.
I think we could open another JIRA and design doc if this is something we should support, separately. Another note, for your information, [SPARK-1529](https://issues.apache.org/jira/browse/SPARK-1529) is resolved as `Won't Fix`.
**Before**
```
./bin/spark-shell --conf spark.local.dir=file:/a/b/c
```
This creates a local directory as below:
```
file:/
└── a
└── b
└── c
...
```
**After**
```bash
./bin/spark-shell --conf spark.local.dir=file:/a/b/c
```
Now, it prints a warning as below:
```
...
17/12/09 21:58:49 WARN Utils: The configured local directories are not expected to be URIs; however, got suspicious values [file:/a/b/c]. Please check your configured local directories.
...
```
```bash
./bin/spark-shell --conf spark.local.dir=file:/a/b/c,/tmp/a/b/c,hdfs:/a/b/c
```
It also works with comma-separated ones:
```
...
17/12/09 22:05:01 WARN Utils: The configured local directories are not expected to be URIs; however, got suspicious values [file:/a/b/c, hdfs:/a/b/c]. Please check your configured local directories.
...
```
## How was this patch tested?
Manually tested:
```
./bin/spark-shell --conf spark.local.dir=C:\\a\\b\\c
./bin/spark-shell --conf spark.local.dir=/tmp/a/b/c
./bin/spark-shell --conf spark.local.dir=a/b/c
./bin/spark-shell --conf spark.local.dir=a/b/c,/tmp/a/b/c,C:\\a\\b\\c
```
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#19934 from HyukjinKwon/SPARK-3685.
## What changes were proposed in this pull request?
Histogram is effective in dealing with skewed distribution. After we generate histogram information for column statistics, we need to adjust filter estimation based on histogram data structure.
## How was this patch tested?
We revised all the unit test cases by including histogram data structure.
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Ron Hu <ron.hu@huawei.com>
Closes#19783 from ron8hu/supportHistogram.
## What changes were proposed in this pull request?
In the previous PRs, https://github.com/apache/spark/pull/17832 and https://github.com/apache/spark/pull/17835 , we convert `TIMESTAMP WITH TIME ZONE` and `TIME WITH TIME ZONE` to `TIMESTAMP` for all the JDBC sources. However, this conversion could be risky since it does not respect our SQL configuration `spark.sql.session.timeZone`.
In addition, each vendor might have different semantics for these two types. For example, Postgres simply returns `TIMESTAMP` types for `TIMESTAMP WITH TIME ZONE`. For such supports, we should do it case by case. This PR reverts the general support of `TIMESTAMP WITH TIME ZONE` and `TIME WITH TIME ZONE` for JDBC sources, except ORACLE Dialect.
When supporting the ORACLE's `TIMESTAMP WITH TIME ZONE`, we only support it when the JVM default timezone is the same as the user-specified configuration `spark.sql.session.timeZone` (whose default is the JVM default timezone). Now, we still treat `TIMESTAMP WITH TIME ZONE` as `TIMESTAMP` when fetching the values via the Oracle JDBC connector, whose client converts the timestamp values with time zone to the timestamp values using the local JVM default timezone (a test case is added to `OracleIntegrationSuite.scala` in this PR for showing the behavior). Thus, to avoid any future behavior change, we will not support it if JVM default timezone is different from `spark.sql.session.timeZone`
No regression because the previous two PRs were just merged to be unreleased master branch.
## How was this patch tested?
Added the test cases
Author: gatorsmile <gatorsmile@gmail.com>
Closes#19939 from gatorsmile/timezoneUpdate.
## What changes were proposed in this pull request?
Before we deliver the Hive compatibility mode, we plan to write a set of test cases that can be easily run in both Spark and Hive sides. We can easily compare whether they are the same or not. When new typeCoercion rules are added, we also can easily track the changes. These test cases can also be backported to the previous Spark versions for determining the changes we made.
This PR is the first attempt for improving the test coverage for type coercion compatibility. We generate these test cases for our binary comparison and ImplicitTypeCasts based on the Apache Derby test cases in https://github.com/apache/derby/blob/10.14/java/testing/org/apache/derbyTesting/functionTests/tests/lang/implicitConversions.sql
## How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#19918 from gatorsmile/typeCoercionTests.
This PR contains implementation of the basic submission client for the cluster mode of Spark on Kubernetes. It's step 2 from the step-wise plan documented [here](https://github.com/apache-spark-on-k8s/spark/issues/441#issuecomment-330802935).
This addition is covered by the [SPIP](http://apache-spark-developers-list.1001551.n3.nabble.com/SPIP-Spark-on-Kubernetes-td22147.html) vote which passed on Aug 31.
This PR and #19468 together form a MVP of Spark on Kubernetes that allows users to run Spark applications that use resources locally within the driver and executor containers on Kubernetes 1.6 and up. Some changes on pom and build/test setup are copied over from #19468 to make this PR self contained and testable.
The submission client is mainly responsible for creating the Kubernetes pod that runs the Spark driver. It follows a step-based approach to construct the driver pod, as the code under the `submit.steps` package shows. The steps are orchestrated by `DriverConfigurationStepsOrchestrator`. `Client` creates the driver pod and waits for the application to complete if it's configured to do so, which is the case by default.
This PR also contains Dockerfiles of the driver and executor images. They are included because some of the environment variables set in the code would not make sense without referring to the Dockerfiles.
* The patch contains unit tests which are passing.
* Manual testing: ./build/mvn -Pkubernetes clean package succeeded.
* It is a subset of the entire changelist hosted at http://github.com/apache-spark-on-k8s/spark which is in active use in several organizations.
* There is integration testing enabled in the fork currently hosted by PepperData which is being moved over to RiseLAB CI.
* Detailed documentation on trying out the patch in its entirety is in: https://apache-spark-on-k8s.github.io/userdocs/running-on-kubernetes.html
cc rxin felixcheung mateiz (shepherd)
k8s-big-data SIG members & contributors: mccheah foxish ash211 ssuchter varunkatta kimoonkim erikerlandson tnachen ifilonenko liyinan926
Author: Yinan Li <liyinan926@gmail.com>
Closes#19717 from liyinan926/spark-kubernetes-4.
## What changes were proposed in this pull request?
We found staging directories will not be dropped sometimes in our production environment.
The createdTempDir will not be deleted if an exception occurs, we should delete createdTempDir with try-finally.
This PR is follow-up SPARK-18703.
## How was this patch tested?
exist tests
Author: zuotingbing <zuo.tingbing9@zte.com.cn>
Closes#19841 from zuotingbing/SPARK-stagedir.
## What changes were proposed in this pull request?
Until 2.2.1, with the default configuration, Apache Spark returns incorrect results when ORC file schema is different from metastore schema order. This is due to Hive 1.2.1 library and some issues on `convertMetastoreOrc` option.
```scala
scala> Seq(1 -> 2).toDF("c1", "c2").write.format("orc").mode("overwrite").save("/tmp/o")
scala> sql("CREATE EXTERNAL TABLE o(c2 INT, c1 INT) STORED AS orc LOCATION '/tmp/o'")
scala> spark.table("o").show // This is wrong.
+---+---+
| c2| c1|
+---+---+
| 1| 2|
+---+---+
scala> spark.read.orc("/tmp/o").show // This is correct.
+---+---+
| c1| c2|
+---+---+
| 1| 2|
+---+---+
```
After [SPARK-22279](https://github.com/apache/spark/pull/19499), the default configuration doesn't have this bug. Although Hive 1.2.1 library code path still has the problem, we had better have a test coverage on what we have now in order to prevent future regression on it.
## How was this patch tested?
Pass the Jenkins with a newly added test test.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19928 from dongjoon-hyun/SPARK-22267.
## What changes were proposed in this pull request?
In SPARK-14516 we have introduced ClusteringEvaluator, but we didn't put any reference in the documentation and the examples were still relying on the sum of squared errors to show a way to evaluate the clustering model.
The PR adds the ClusteringEvaluator in the examples.
## How was this patch tested?
Manual runs of the examples.
Author: Marco Gaido <mgaido@hortonworks.com>
Closes#19676 from mgaido91/SPARK-14516_examples.
## What changes were proposed in this pull request?
since hive 2.0+ upgrades log4j to log4j2，a lot of [changes](https://issues.apache.org/jira/browse/HIVE-11304) are made working on it.
as spark is not to ready to update its inner hive version(1.2.1) , so I manage to make little changes.
the function registerCurrentOperationLog is moved from SQLOperstion to its parent class ExecuteStatementOperation so spark can use it.
## How was this patch tested?
manual test
Author: zouchenjun <zouchenjun@youzan.com>
Closes#19721 from ChenjunZou/operation-log.
## What changes were proposed in this pull request?
Change to dist.apache.org instead of home directory
sha512 should have .sha512 extension. From ASF release signing doc: "The checksum SHOULD be generated using SHA-512. A .sha file SHOULD contain a SHA-1 checksum, for historical reasons."
NOTE: I *think* should require some changes to work with Jenkins' release build
## How was this patch tested?
manually
Author: Felix Cheung <felixcheung_m@hotmail.com>
Closes#19754 from felixcheung/releasescript.
## What changes were proposed in this pull request?
During https://github.com/apache/spark/pull/19882, `conf` is mistakenly used to switch ORC implementation between `native` and `hive`. To affect `OrcTest` correctly, `spark.conf` should be used.
## How was this patch tested?
Pass the tests.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19931 from dongjoon-hyun/SPARK-22672-2.
## What changes were proposed in this pull request?
Int96 data written by impala vs data written by hive & spark is stored slightly differently -- they use a different offset for the timezone. This adds an option "spark.sql.parquet.int96TimestampConversion" (false by default) to adjust timestamps if and only if the writer is impala (or more precisely, if the parquet file's "createdBy" metadata does not start with "parquet-mr"). This matches the existing behavior in hive from HIVE-9482.
## How was this patch tested?
Unit test added, existing tests run via jenkins.
Author: Imran Rashid <irashid@cloudera.com>
Author: Henry Robinson <henry@apache.org>
Closes#19769 from squito/SPARK-12297_skip_conversion.
…structures
## What changes were proposed in this pull request?
In general, the SHS pages now use the public API types to represent applications. Some internal code paths still used its own view of what applications and attempts look like (`ApplicationHistoryInfo` and `ApplicationAttemptInfo`), declared in ApplicationHistoryProvider.scala.
This pull request removes these classes and updates the rest of the code to use `status.api.v1.ApplicationInfo` and `status.api.v1.ApplicationAttemptInfo` instead.
Furthermore `status.api.v1.ApplicationInfo` and `status.api.v1.ApplicationAttemptInfo` were changed to case class to
- facilitate copying instances
- equality checking in test code
- nicer toString()
To simplify the code a bit `v1.` prefixes were also removed from occurrences of v1.ApplicationInfo and v1.ApplicationAttemptInfo as there is no more ambiguity between classes in history and status.api.v1.
## How was this patch tested?
By running existing automated tests.
Author: Sandor Murakozi <smurakozi@gmail.com>
Closes#19920 from smurakozi/SPARK-21672.
## What changes were proposed in this pull request?
During Spark shutdown, if there are some active tasks, sometimes they will complete with incorrect results. The issue is in PythonRunner where it is returning partial result instead of throwing exception during Spark shutdown.
This patch makes it so that these tasks fail instead of complete with partial results.
## How was this patch tested?
Existing tests.
Author: Li Jin <ice.xelloss@gmail.com>
Closes#19852 from icexelloss/python-runner-shutdown.
## What changes were proposed in this pull request?
Follow-up to earlier commit.
The peak memory of BytesToBytesMap is not updated in more places - spill() and destructiveIterator().
## How was this patch tested?
Manually.
Author: Juliusz Sompolski <julek@databricks.com>
Closes#19923 from juliuszsompolski/SPARK-22721cd.
## What changes were proposed in this pull request?
#19416 changed the format in which rows were encoded in the state store. However, this can break existing streaming queries with the old format in unpredictable ways (potentially crashing the JVM). Hence I am reverting this for now. This will be re-applied in the future after we start saving more metadata in checkpoints to signify which version of state row format the existing streaming query is running. Then we can decode old and new formats accordingly.
## How was this patch tested?
Existing tests.
Author: Tathagata Das <tathagata.das1565@gmail.com>
Closes#19924 from tdas/SPARK-22187-1.
## What changes were proposed in this pull request?
This PR support for pushing down filters for DateType in ORC
## How was this patch tested?
Pass the Jenkins with newly add and updated test cases.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#18995 from dongjoon-hyun/SPARK-21787.
## What changes were proposed in this pull request?
Like Parquet, this PR aims to turn on `spark.sql.hive.convertMetastoreOrc` by default.
## How was this patch tested?
Pass all the existing test cases.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19499 from dongjoon-hyun/SPARK-22279.
## What changes were proposed in this pull request?
The current time complexity of ConstantPropagation is O(n^2), which can be slow when the query is complex.
Refactor the implementation with O( n ) time complexity, and some pruning to avoid traversing the whole `Condition`
## How was this patch tested?
Unit test.
Also simple benchmark test in ConstantPropagationSuite
```
val condition = (1 to 500).map{_ => Rand(0) === Rand(0)}.reduce(And)
val query = testRelation
.select(columnA)
.where(condition)
val start = System.currentTimeMillis()
(1 to 40).foreach { _ =>
Optimize.execute(query.analyze)
}
val end = System.currentTimeMillis()
println(end - start)
```
Run time before changes: 18989ms (474ms per loop)
Run time after changes: 1275 ms (32ms per loop)
Author: Wang Gengliang <ltnwgl@gmail.com>
Closes#19912 from gengliangwang/ConstantPropagation.
…a-2.12 and JDK9
## What changes were proposed in this pull request?
Some compile error after upgrading to scala-2.12
```javascript
spark_source/core/src/main/scala/org/apache/spark/executor/Executor.scala:455: ambiguous reference to overloaded definition, method limit in class ByteBuffer of type (x$1: Int)java.nio.ByteBuffer
method limit in class Buffer of type ()Int
match expected type ?
val resultSize = serializedDirectResult.limit
error
```
The limit method was moved from ByteBuffer to the superclass Buffer and it can no longer be called without (). The same reason for position method.
```javascript
/home/zly/prj/oss/jdk9_HOS_SOURCE/spark_source/sql/hive/src/main/scala/org/apache/spark/sql/hive/execution/ScriptTransformationExec.scala:427: ambiguous reference to overloaded definition, [error] both method putAll in class Properties of type (x$1: java.util.Map[_, _])Unit [error] and method putAll in class Hashtable of type (x$1: java.util.Map[_ <: Object, _ <: Object])Unit [error] match argument types (java.util.Map[String,String])
[error] props.putAll(outputSerdeProps.toMap.asJava)
[error] ^
```
This is because the key type is Object instead of String which is unsafe.
## How was this patch tested?
running tests
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: kellyzly <kellyzly@126.com>
Closes#19854 from kellyzly/SPARK-22660.
## What changes were proposed in this pull request?
Some objects functions are using global variables which are not needed. This can generate some unneeded entries in the constant pool.
The PR replaces the unneeded global variables with local variables.
## How was this patch tested?
added UTs
Author: Marco Gaido <mgaido@hortonworks.com>
Author: Marco Gaido <marcogaido91@gmail.com>
Closes#19908 from mgaido91/SPARK-22696.
