### What changes were proposed in this pull request?
This is kind of a followup of https://github.com/apache/spark/pull/24033 and https://github.com/apache/spark/pull/30945.
Many of references in `SecurityManager` were introduced from SPARK-1189, and related usages were removed later from https://github.com/apache/spark/pull/24033 and https://github.com/apache/spark/pull/30945. This PR proposes to remove them out.
### Why are the changes needed?
For better readability of codes.
### Does this PR introduce _any_ user-facing change?
No, dev-only.
### How was this patch tested?
Manually complied. GitHub Actions and Jenkins build should test it out as well.
Closes#31636 from HyukjinKwon/SPARK-34520.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
From [minikube version v1.1.0](https://github.com/kubernetes/minikube/blob/v1.1.0/CHANGELOG.md) kubectl is available as a command. So the kubeconfig settings can be accessed like:
```
$ minikube kubectl config view
apiVersion: v1
clusters:
- cluster:
certificate-authority: /Users/attilazsoltpiros/.minikube/ca.crt
server: https://127.0.0.1:32788
name: minikube
contexts:
- context:
cluster: minikube
namespace: default
user: minikube
name: minikube
current-context: minikube
kind: Config
preferences: {}
users:
- name: minikube
user:
client-certificate: /Users/attilazsoltpiros/.minikube/profiles/minikube/client.crt
client-key: /Users/attilazsoltpiros/.minikube/profiles/minikube/client.key
```
Here the vm-driver was docker and the server port (https://127.0.0.1:32788) is different from the hardcoded 8443.
So the main part of this PR is introducing kubernetes client configuration based on the kubeconfig (output of `minikube kubectl config view`) in case of minikube versions after v1.1.0 and the old legacy way of configuration is also kept as minikube version should be supported back to v0.34.1 .
Moreover as the old style of config parsing pattern wasn't sufficient in my case as when the `minikube kubectl config view` is called kubectl downloading message might be included before the first key I changed it even for the existent keys to be a consistent pattern in this file.
The old parsing in an example:
```
private val HOST_PREFIX = "host:"
val hostString = statusString.find(_.contains(s"$HOST_PREFIX "))
val status1 = hostString.get.split(HOST_PREFIX)(1)
```
The new parsing:
```
private val HOST_PREFIX = "host: "
val hostString = statusString.find(_.contains(HOST_PREFIX))
hostString.get.split(HOST_PREFIX)(1)
```
So the PREFIX is extended with the extra space at the declaration (this way the two separate string operation are more safe and consistent with each other) and the replace is changed to split and getting the 2nd string from the result (which is guaranteed to contain only the text after the PREFIX when the PREFIX is a contained substring).
Finally there is tiny change in `dev-run-integration-tests.sh` to introduce `--skip-building-dependencies` which switchs off building of maven dependencies of `kubernetes-integration-tests` from the Spark project.
This could be used when only the `kubernetes-integration-tests` should be rebuilded as only the tests are modified.
### Why are the changes needed?
Kubernetes client configuration based on kubeconfig settings is more reliable and provides a solution which is minikube version independent.
### Does this PR introduce _any_ user-facing change?
No. This is only test code.
### How was this patch tested?
tested manually on two minikube versions.
Minikube v0.34.1:
```
$ minikube version
minikube version: v0.34.1
$ grep "version\|building" resource-managers/kubernetes/integration-tests/target/integration-tests.log
20/12/12 12:52:25.135 ScalaTest-main-running-DiscoverySuite INFO Minikube: minikube version: v0.34.1
20/12/12 12:52:25.761 ScalaTest-main-running-DiscoverySuite INFO Minikube: building kubernetes config with apiVersion: v1, masterUrl: https://192.168.99.103:8443, caCertFile: /Users/attilazsoltpiros/.minikube/ca.crt, clientCertFile: /Users/attilazsoltpiros/.minikube/apiserver.crt, clientKeyFile: /Users/attilazsoltpiros/.minikube/apiserver.key
```
Minikube v1.15.1
```
$ minikube version
minikube version: v1.15.1
commit: 23f40a012abb52eff365ff99a709501a61ac5876
$ grep "version\|building" resource-managers/kubernetes/integration-tests/target/integration-tests.log
20/12/13 06:25:55.086 ScalaTest-main-running-DiscoverySuite INFO Minikube: minikube version: v1.15.1
20/12/13 06:25:55.597 ScalaTest-main-running-DiscoverySuite INFO Minikube: building kubernetes config with apiVersion: v1, masterUrl: https://192.168.64.4:8443, caCertFile: /Users/attilazsoltpiros/.minikube/ca.crt, clientCertFile: /Users/attilazsoltpiros/.minikube/profiles/minikube/client.crt, clientKeyFile: /Users/attilazsoltpiros/.minikube/profiles/minikube/client.key
$ minikube kubectl config view
apiVersion: v1
clusters:
- cluster:
certificate-authority: /Users/attilazsoltpiros/.minikube/ca.crt
server: https://192.168.64.4:8443
name: minikube
contexts:
- context:
cluster: minikube
namespace: default
user: minikube
name: minikube
current-context: minikube
kind: Config
preferences: {}
users:
- name: minikube
user:
client-certificate: /Users/attilazsoltpiros/.minikube/profiles/minikube/client.crt
client-key: /Users/attilazsoltpiros/.minikube/profiles/minikube/client.key
```
Closes#30751 from attilapiros/SPARK-32617.
Authored-by: “attilapiros” <piros.attila.zsolt@gmail.com>
Signed-off-by: Holden Karau <hkarau@apple.com>
### What changes were proposed in this pull request?
This PR aims to use the runtime Hadoop version in K8s integration test.
### Why are the changes needed?
SPARK-33212 upgrades Hadoop dependency from 3.2.0 to 3.2.2 and we will upgrade to 3.3.x+.
We had better use the runtime Hadoop version instead of having a static string.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
Pass the K8s IT.
This is tested locally like the following.
```
KubernetesSuite:
...
- Launcher client dependencies
- SPARK-33615: Launcher client archives
- SPARK-33748: Launcher python client respecting PYSPARK_PYTHON
- SPARK-33748: Launcher python client respecting spark.pyspark.python and spark.pyspark.driver.python
- Launcher python client dependencies using a zip file
...
```
Closes#31604 from dongjoon-hyun/SPARK-34487.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to upgrade `kubernetes-client` library from 4.12.0 to 4.13.2 for Apache Spark 3.2.0.
### Why are the changes needed?
This will bring [K8s 1.19.1](https://github.com/fabric8io/kubernetes-client/pull/2541) models officially and the latest bug fixes.
- https://github.com/fabric8io/kubernetes-client/releases/tag/v4.13.0
- https://github.com/fabric8io/kubernetes-client/releases/tag/v4.13.1
- https://github.com/fabric8io/kubernetes-client/releases/tag/v4.13.2
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
Pass the K8s IT and UT.
```
KubernetesSuite:
- Run SparkPi with no resources
- Run SparkPi with a very long application name.
- Use SparkLauncher.NO_RESOURCE
- Run SparkPi with a master URL without a scheme.
- Run SparkPi with an argument.
- Run SparkPi with custom labels, annotations, and environment variables.
- All pods have the same service account by default
- Run extraJVMOptions check on driver
- Run SparkRemoteFileTest using a remote data file
- Verify logging configuration is picked from the provided SPARK_CONF_DIR/log4j.properties
- Run SparkPi with env and mount secrets.
- Run PySpark on simple pi.py example
- Run PySpark to test a pyfiles example
- Run PySpark with memory customization
- Run in client mode.
- Start pod creation from template
- PVs with local storage
- Launcher client dependencies
- SPARK-33615: Launcher client archives
- SPARK-33748: Launcher python client respecting PYSPARK_PYTHON
- SPARK-33748: Launcher python client respecting spark.pyspark.python and spark.pyspark.driver.python
- Launcher python client dependencies using a zip file
- Test basic decommissioning
- Test basic decommissioning with shuffle cleanup
- Test decommissioning with dynamic allocation & shuffle cleanups
- Test decommissioning timeouts
- Run SparkR on simple dataframe.R example
Run completed in 19 minutes, 25 seconds.
Total number of tests run: 27
Suites: completed 2, aborted 0
Tests: succeeded 27, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
```
Closes#31602 from dongjoon-hyun/SPARK-34486.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR adds missing docs for ResourceProfile related APIs. Besides, it includes a few minor changes on API:
* ResourceProfileBuilder.build -> ResourceProfileBuilder.builder()
* Provides java specific API `allSupportedExecutorResourcesJList`
* private `ResourceAllocator` since it was mistakenly exposed previously
### Why are the changes needed?
Add missing API docs
### Does this PR introduce _any_ user-facing change?
No, as Apache Spark 3.1 hasn't officially released.
### How was this patch tested?
Updated unit tests due to the signature change of `build()`.
Closes#31496 from Ngone51/resource-profile-api-cleanup.
Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to make `KubernetesClusterSchedulerBackend` ignore `RegisterExecutor` message when `SparkContext` is stopped already.
### Why are the changes needed?
If `SparkDriver` is terminated, the executors will be removed by K8s automatically.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
Pass the newly added test case.
Closes#31587 from dongjoon-hyun/SPARK-34469.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR adds the following metrics to track executor remove reasons during dynamic allocation:
- `numberExecutorsGracefullyDecommissioned`: number of executors which reached the finished decommissioning state and shut itself down cleanly
- `numberExecutorsDecommissionUnfinished`: executors which requested to decommission but they stopped without reaching the finished decommissioning state
- `numberExecutorsKilledByDriver`: executors killed by the driver (requested to stop)
- `numberExecutorsExitedUnexpectedly`: executors exited without driver request
### Why are the changes needed?
For supporting monitoring of dynamic allocation better with these metrics.
### Does this PR introduce _any_ user-facing change?
Yes. The new metrics will be available for monitoring.
### How was this patch tested?
With unit and integration tests.
Finally manually checked the new metrics in jconsole:
<img width="1054" alt="jmx" src="https://user-images.githubusercontent.com/2017933/107458686-de8adf00-6b54-11eb-86f7-41faf2fb638f.png">
Closes#31450 from attilapiros/SPARK-33763-final.
Authored-by: “attilapiros” <piros.attila.zsolt@gmail.com>
Signed-off-by: Holden Karau <hkarau@apple.com>
### What changes were proposed in this pull request?
This PR introduces a new protected method in `SparkFunSuite` which is only called when the test failed and can be used to collect logs for failed test. By this PR it is implemented in the Kubernetes tests by `KubernetesSuite` class where it collects all the POD logs and logs them out.
This unfortunately cannot be realized with a simple "after" method as in the "after" method the test outcome is not available.
Moreover this PR removes the `appLocator` as a method argument as `appLocator` is available as a member variable.
### Why are the changes needed?
Currently both the driver and executors logs are lost.
In [developer-tools](https://spark.apache.org/developer-tools.html) there is a hint:
"Getting logs from the pods and containers directly is an exercise left to the reader."
But when the test is executed by Jenkins and a failure happened we really need the POD logs to analyze problem.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
By integration testing. I have checked what would happen if one test fails, the output would be:
```
21/02/14 11:05:34.261 ScalaTest-main-running-KubernetesSuite INFO KubernetesSuite:
===== EXTRA LOGS FOR THE FAILED TEST
21/02/14 11:05:34.278 ScalaTest-main-running-KubernetesSuite INFO KubernetesSuite: BEGIN driver POD log
++ id -u
+ myuid=185
++ id -g
+ mygid=0
+ set +e
++ getent passwd 185
+ uidentry=
+ set -e
+ '[' -z '' ']'
+ '[' -w /etc/passwd ']'
+ echo '185❌185:0:anonymous uid:/opt/spark:/bin/false'
+ SPARK_CLASSPATH=':/opt/spark/jars/*'
+ env
+ grep SPARK_JAVA_OPT_
+ sort -t_ -k4 -n
+ sed 's/[^=]*=\(.*\)/\1/g'
+ readarray -t SPARK_EXECUTOR_JAVA_OPTS
+ '[' -n '' ']'
+ '[' -z ']'
+ '[' -z ']'
+ '[' -n '' ']'
+ '[' -z ']'
+ '[' -z x ']'
+ SPARK_CLASSPATH='/opt/spark/conf::/opt/spark/jars/*'
+ case "$1" in
+ shift 1
+ CMD=("$SPARK_HOME/bin/spark-submit" --conf "spark.driver.bindAddress=$SPARK_DRIVER_BIND_ADDRESS" --deploy-mode client "$")
+ exec /usr/bin/tini -s -- /opt/spark/bin/spark-submit --conf spark.driver.bindAddress=172.17.0.3 --deploy-mode client --properties-file /opt/spark/conf/spark.properties --class org.apache.spark.deploy.PythonRunner local:///opt/spark/tests/decommissioning.py
21/02/14 10:02:28 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Starting decom test
Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
21/02/14 10:02:29 INFO SparkContext: Running Spark version 3.2.0-SNAPSHOT
21/02/14 10:02:29 INFO ResourceUtils: ==============================================================
21/02/14 10:02:29 INFO ResourceUtils: No custom resources configured for spark.driver.
21/02/14 10:02:29 INFO ResourceUtils: ==============================================================
...
21/02/14 10:03:17 INFO ShutdownHookManager: Deleting directory /var/data/spark-fa6961ed-a2c1-444c-bfeb-20e63ba0b5cf/spark-ab4b0287-6e24-4b39-837e-9b0b62c1f26f
21/02/14 10:03:17 INFO ShutdownHookManager: Deleting directory /tmp/spark-d6b11e7d-6a03-4a1d-8559-37cb853319bf
21/02/14 11:05:34.279 ScalaTest-main-running-KubernetesSuite INFO KubernetesSuite: END driver POD log
```
Closes#31561 from attilapiros/SPARK-34426.
Authored-by: “attilapiros” <piros.attila.zsolt@gmail.com>
Signed-off-by: Jungtaek Lim <kabhwan.opensource@gmail.com>
### What changes were proposed in this pull request?
Allow users to have Spark attempt to decommission excluded executors.
Since excluded executors may be flaky, this also adds the ability for users to specify a time limit after which a decommissioning executor will be killed by Spark.
### Why are the changes needed?
This may help prevent fetch failures from excluded executors, and also handle the situation in which executors
### Does this PR introduce _any_ user-facing change?
Yes, two new configuration flags for the behaviour.
### How was this patch tested?
Extended unit and integration tests.
Closes#31539 from holdenk/re=enable-SPARK-34104-SPARK-34105.
Authored-by: Holden Karau <hkarau@apple.com>
Signed-off-by: Holden Karau <hkarau@apple.com>
### What changes were proposed in this pull request?
Allow users to have Spark attempt to decommission excluded executors.
Since excluded executors may be flaky, this also adds the ability for users to specify a time limit after which a decommissioning executor will be killed by Spark.
### Why are the changes needed?
This may help prevent fetch failures from excluded executors, and also handle the situation in which executors
### Does this PR introduce _any_ user-facing change?
Yes, two new configuration flags for the behaviour.
### How was this patch tested?
Extended unit and integration tests.
Closes#31249 from holdenk/configure-inaccessibleList-kill-to-use-decommissioning.
Lead-authored-by: Holden Karau <hkarau@apple.com>
Co-authored-by: Holden Karau <holden@pigscanfly.ca>
Signed-off-by: Holden Karau <hkarau@apple.com>
### What changes were proposed in this pull request?
Fixing identification of timed-out pending pod requests as excess requests to delete when the excess is higher than the newly created timed out requests and there is some non-timed out newly created requests too.
### Why are the changes needed?
After https://github.com/apache/spark/pull/29981 only timed out newly created requests and timed out pending requests are taken as excess request.
But there is small bug when the excess is higher than the newly created timed out requests and there is some non-timed out newly created requests as well. Because all the newly created requests are counted as excess request when items are chosen from the timed out pod pending requests.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
There is new unit test added: `SPARK-34334: correctly identify timed out pending pod requests as excess`.
Closes#31445 from attilapiros/SPARK-34334.
Authored-by: “attilapiros” <piros.attila.zsolt@gmail.com>
Signed-off-by: Holden Karau <hkarau@apple.com>
### What changes were proposed in this pull request?
This PR aims to fix `KubernetesClusterSchedulerBackend.stop` to wrap `super.stop` with `Utils.tryLogNonFatalError`.
### Why are the changes needed?
[CoarseGrainedSchedulerBackend.stop](https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/scheduler/cluster/CoarseGrainedSchedulerBackend.scala#L559) may throw `SparkException` and this causes K8s resource (pod and configmap) leakage.
### Does this PR introduce _any_ user-facing change?
No. This is a bug fix.
### How was this patch tested?
Pass the CI with the newly added test case.
Closes#31533 from dongjoon-hyun/SPARK-34407.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
`Mockito.initMocks(Object)` is a deprecated api, should use `Mockito.openMocks(Object).close()` instead.
### Why are the changes needed?
Cleanup deprecation api usage.
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
Pass the Jenkins or GitHub Action
Closes#31487 from LuciferYang/mockito-api.
Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to add a new configuration `spark.kubernetes.executor.disableConfigMap`.
### Why are the changes needed?
This can be use to disable config map creating for executor pods due to https://github.com/apache/spark/pull/27735 .
### Does this PR introduce _any_ user-facing change?
No. By default, this doesn't change AS-IS behavior.
This is a new feature to add an ability to disable SPARK-30985.
### How was this patch tested?
Pass the newly added UT.
Closes#31428 from dongjoon-hyun/SPARK-34316.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
Fixing the flaky `handle large number of containers and tasks (SPARK-18750)` by avoiding to use `DNSToSwitchMapping` as in some situation DNS lookup could be extremely slow.
### Why are the changes needed?
After https://github.com/apache/spark/pull/31363 was merged the flaky `handle large number of containers and tasks (SPARK-18750)` test failed again in some other PRs but now we have the exact place where the test is stuck.
It is in the DNS lookup:
```
[info] - handle large number of containers and tasks (SPARK-18750) *** FAILED *** (30 seconds, 4 milliseconds)
[info] Failed with an exception or a timeout at thread join:
[info]
[info] java.lang.RuntimeException: Timeout at waiting for thread to stop (its stack trace is added to the exception)
[info] at java.net.Inet6AddressImpl.lookupAllHostAddr(Native Method)
[info] at java.net.InetAddress$2.lookupAllHostAddr(InetAddress.java:929)
[info] at java.net.InetAddress.getAddressesFromNameService(InetAddress.java:1324)
[info] at java.net.InetAddress.getAllByName0(InetAddress.java:1277)
[info] at java.net.InetAddress.getAllByName(InetAddress.java:1193)
[info] at java.net.InetAddress.getAllByName(InetAddress.java:1127)
[info] at java.net.InetAddress.getByName(InetAddress.java:1077)
[info] at org.apache.hadoop.net.NetUtils.normalizeHostName(NetUtils.java:568)
[info] at org.apache.hadoop.net.NetUtils.normalizeHostNames(NetUtils.java:585)
[info] at org.apache.hadoop.net.CachedDNSToSwitchMapping.resolve(CachedDNSToSwitchMapping.java:109)
[info] at org.apache.spark.deploy.yarn.SparkRackResolver.coreResolve(SparkRackResolver.scala:75)
[info] at org.apache.spark.deploy.yarn.SparkRackResolver.resolve(SparkRackResolver.scala:66)
[info] at org.apache.spark.deploy.yarn.LocalityPreferredContainerPlacementStrategy.$anonfun$localityOfRequestedContainers$3(LocalityPreferredContainerPlacementStrategy.scala:142)
[info] at org.apache.spark.deploy.yarn.LocalityPreferredContainerPlacementStrategy$$Lambda$658/1080992036.apply$mcVI$sp(Unknown Source)
[info] at scala.collection.immutable.Range.foreach$mVc$sp(Range.scala:158)
[info] at org.apache.spark.deploy.yarn.LocalityPreferredContainerPlacementStrategy.localityOfRequestedContainers(LocalityPreferredContainerPlacementStrategy.scala:138)
[info] at org.apache.spark.deploy.yarn.LocalityPlacementStrategySuite.org$apache$spark$deploy$yarn$LocalityPlacementStrategySuite$$runTest(LocalityPlacementStrategySuite.scala:94)
[info] at org.apache.spark.deploy.yarn.LocalityPlacementStrategySuite$$anon$1.run(LocalityPlacementStrategySuite.scala:40)
[info] at java.lang.Thread.run(Thread.java:748) (LocalityPlacementStrategySuite.scala:61)
...
```
This could be because of the DNS servers used by those build machines are not configured to handle IPv6 queries and the client has to wait for the IPv6 query to timeout before falling back to IPv4.
This even make the tests more consistent. As when a single host was given to lookup via `resolve(hostName: String)` it gave a different answer from calling `resolve(hostNames: Seq[String])` with a `Seq` containing that single host.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
Unit tests.
Closes#31397 from attilapiros/SPARK-34154-2nd.
Authored-by: “attilapiros” <piros.attila.zsolt@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to remove `internal()` from `spark.kubernetes.executor.podNamePrefix` in order to make it the configuration public.
### Why are the changes needed?
In line with K8s GA, this will allow some users control the full executor pod names officially.
This is useful when we want a custom executor pod name pattern independently from the app name.
### Does this PR introduce _any_ user-facing change?
No, this has been there since Apache Spark 2.3.0.
### How was this patch tested?
N/A.
Closes#31386 from dongjoon-hyun/SPARK-34281.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR extends the `handle large number of containers and tasks (SPARK-18750)` test with a time limit and in case of timeout it saves the stack trace of the running thread to provide extra information about the reason why it got stuck.
### Why are the changes needed?
This is a flaky test which sometime runs for hours without stopping.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
I checked it with a temporary code change: by adding a `Thread.sleep` to `LocalityPreferredContainerPlacementStrategy#expectedHostToContainerCount`.
The stack trace showed the correct method:
```
[info] LocalityPlacementStrategySuite:
[info] - handle large number of containers and tasks (SPARK-18750) *** FAILED *** (30 seconds, 26 milliseconds)
[info] Failed with an exception or a timeout at thread join:
[info]
[info] java.lang.RuntimeException: Timeout at waiting for thread to stop (its stack trace is added to the exception)
[info] at java.lang.Thread.sleep(Native Method)
[info] at org.apache.spark.deploy.yarn.LocalityPreferredContainerPlacementStrategy.$anonfun$expectedHostToContainerCount$1(LocalityPreferredContainerPlacementStrategy.scala:198)
[info] at org.apache.spark.deploy.yarn.LocalityPreferredContainerPlacementStrategy$$Lambda$281/381161906.apply(Unknown Source)
[info] at scala.collection.TraversableLike.$anonfun$map$1(TraversableLike.scala:238)
[info] at scala.collection.TraversableLike$$Lambda$16/322836221.apply(Unknown Source)
[info] at scala.collection.immutable.HashMap$HashMap1.foreach(HashMap.scala:234)
[info] at scala.collection.immutable.HashMap$HashTrieMap.foreach(HashMap.scala:468)
[info] at scala.collection.immutable.HashMap$HashTrieMap.foreach(HashMap.scala:468)
[info] at scala.collection.TraversableLike.map(TraversableLike.scala:238)
[info] at scala.collection.TraversableLike.map$(TraversableLike.scala:231)
[info] at scala.collection.AbstractTraversable.map(Traversable.scala:108)
[info] at org.apache.spark.deploy.yarn.LocalityPreferredContainerPlacementStrategy.expectedHostToContainerCount(LocalityPreferredContainerPlacementStrategy.scala:188)
[info] at org.apache.spark.deploy.yarn.LocalityPreferredContainerPlacementStrategy.localityOfRequestedContainers(LocalityPreferredContainerPlacementStrategy.scala:112)
[info] at org.apache.spark.deploy.yarn.LocalityPlacementStrategySuite.org$apache$spark$deploy$yarn$LocalityPlacementStrategySuite$$runTest(LocalityPlacementStrategySuite.scala:94)
[info] at org.apache.spark.deploy.yarn.LocalityPlacementStrategySuite$$anon$1.run(LocalityPlacementStrategySuite.scala:40)
[info] at java.lang.Thread.run(Thread.java:748) (LocalityPlacementStrategySuite.scala:61)
...
```
Closes#31363 from attilapiros/SPARK-34154.
Authored-by: “attilapiros” <piros.attila.zsolt@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Using a function like `.mkString` or `.getLines` directly on a `scala.io.Source` opened by `fromFile`, `fromURL`, `fromURI ` will leak the underlying file handle, this pr use the `Utils.tryWithResource` method wrap the `BufferedSource` to ensure these `BufferedSource` closed.
### Why are the changes needed?
Avoid file handle leak.
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
Pass the Jenkins or GitHub Action
Closes#31323 from LuciferYang/source-not-closed.
Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
`KubernetesClusterManager` and `ExecutorPodsLifecycleManager` are private Spark classes.
This PR aims to move `Guava Cache` from a constructor parameter to private field of `ExecutorPodsLifecycleManager`.
### Why are the changes needed?
1. Although `KubernetesClusterManager` creates `Guava Cache`, only `ExecutorPodsLifecycleManager` uses it.
2. Although `ExecutorPodsLifecycleManager` is a Spark private class, when some users implement a new cluster manager with `ExternalClusterManager` for K8s, they can reuse `ExecutorPodsLifecycleManager`. In this case, `Guava Cache` is not good as an interface because it's a shaded class.
### Does this PR introduce _any_ user-facing change?
No. This is an Spark private.
### How was this patch tested?
Pass the existing UTs.
Closes#31297 from dongjoon-hyun/SPARK-34206.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This:
1. switches Spark to use shaded Hadoop clients, namely hadoop-client-api and hadoop-client-runtime, for Hadoop 3.x.
2. upgrade built-in version for Hadoop 3.x to Hadoop 3.2.2
Note that for Hadoop 2.7, we'll still use the same modules such as hadoop-client.
In order to still keep default Hadoop profile to be hadoop-3.2, this defines the following Maven properties:
```
hadoop-client-api.artifact
hadoop-client-runtime.artifact
hadoop-client-minicluster.artifact
```
which default to:
```
hadoop-client-api
hadoop-client-runtime
hadoop-client-minicluster
```
but all switch to `hadoop-client` when the Hadoop profile is hadoop-2.7. A side affect from this is we'll import the same dependency multiple times. For this I have to disable Maven enforcer `banDuplicatePomDependencyVersions`.
Besides above, there are the following changes:
- explicitly add a few dependencies which are imported via transitive dependencies from Hadoop jars, but are removed from the shaded client jars.
- removed the use of `ProxyUriUtils.getPath` from `ApplicationMaster` which is a server-side/private API.
- modified `IsolatedClientLoader` to exclude `hadoop-auth` jars when Hadoop version is 3.x. This change should only matter when we're not sharing Hadoop classes with Spark (which is _mostly_ used in tests).
### Why are the changes needed?
Hadoop 3.2.2 is released with new features and bug fixes, so it's good for the Spark community to adopt it. However, latest Hadoop versions starting from Hadoop 3.2.1 have upgraded to use Guava 27+. In order to resolve Guava conflicts, this takes the approach by switching to shaded client jars provided by Hadoop. This also has the benefits of avoid pulling other 3rd party dependencies from Hadoop side so as to avoid more potential future conflicts.
### Does this PR introduce _any_ user-facing change?
When people use Spark with `hadoop-provided` option, they should make sure class path contains `hadoop-client-api` and `hadoop-client-runtime` jars. In addition, they may need to make sure these jars appear before other Hadoop jars in the order. Otherwise, classes may be loaded from the other non-shaded Hadoop jars and cause potential conflicts.
### How was this patch tested?
Relying on existing tests.
Closes#30701 from sunchao/test-hadoop-3.2.2.
Authored-by: Chao Sun <sunchao@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
There are some redundant collection conversion can be removed, for version compatibility, clean up these with Scala-2.13 profile.
### Why are the changes needed?
Remove redundant collection conversion
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
- Pass the Jenkins or GitHub Action
- Manual test `core`, `graphx`, `mllib`, `mllib-local`, `sql`, `yarn`,`kafka-0-10` in Scala 2.13 passed
Closes#31125 from LuciferYang/SPARK-34068.
Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
### What changes were proposed in this pull request?
Missing POD detection is extended by timestamp (and time limit) based check to avoid wrongfully detection of missing POD detection.
The two new timestamps:
- `fullSnapshotTs` is introduced for the `ExecutorPodsSnapshot` which only updated by the pod polling snapshot source
- `registrationTs` is introduced for the `ExecutorData` and it is initialized at the executor registration at the scheduler backend
Moreover a new config `spark.kubernetes.executor.missingPodDetectDelta` is used to specify the accepted delta between the two.
### Why are the changes needed?
Watching a POD (`ExecutorPodsWatchSnapshotSource`) only inform about single POD changes. This could wrongfully lead to detecting of missing PODs (PODs known by scheduler backend but missing from POD snapshots) by the executor POD lifecycle manager.
A key indicator of this error is seeing this log message:
> "The executor with ID [some_id] was not found in the cluster but we didn't get a reason why. Marking the executor as failed. The executor may have been deleted but the driver missed the deletion event."
So one of the problem is running the missing POD detection check even when a single POD is changed without having a full consistent snapshot about all the PODs (see `ExecutorPodsPollingSnapshotSource`).
The other problem could be the race between the executor POD lifecycle manager and the scheduler backend: so even in case of a having a full snapshot the registration at the scheduler backend could precede the snapshot polling (and processing of those polled snapshots).
### Does this PR introduce _any_ user-facing change?
Yes. When the POD is missing then the reason message explaining the executor's exit is extended with both timestamps (the polling time and the executor registration time) and even the new config is mentioned.
### How was this patch tested?
The existing unit tests are extended.
Closes#30675 from attilapiros/SPARK-33711.
Authored-by: “attilapiros” <piros.attila.zsolt@gmail.com>
Signed-off-by: Holden Karau <hkarau@apple.com>
### What changes were proposed in this pull request?
This PR is basically a followup of https://github.com/apache/spark/pull/14332.
Calling `map` alone might leave it not executed due to lazy evaluation, e.g.)
```
scala> val foo = Seq(1,2,3)
foo: Seq[Int] = List(1, 2, 3)
scala> foo.map(println)
1
2
3
res0: Seq[Unit] = List((), (), ())
scala> foo.view.map(println)
res1: scala.collection.SeqView[Unit,Seq[_]] = SeqViewM(...)
scala> foo.view.foreach(println)
1
2
3
```
We should better use `foreach` to make sure it's executed where the output is unused or `Unit`.
### Why are the changes needed?
To prevent the potential issues by not executing `map`.
### Does this PR introduce _any_ user-facing change?
No, the current codes look not causing any problem for now.
### How was this patch tested?
I found these item by running IntelliJ inspection, double checked one by one, and fixed them. These should be all instances across the codebase ideally.
Closes#31110 from HyukjinKwon/SPARK-34059.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Liang-Chi Hsieh <viirya@gmail.com>
### What changes were proposed in this pull request?
Label both the statuses and ensure the ExecutorPodSnapshot starts with the default config to match.
### Why are the changes needed?
The current test depends on the order rather than testing the desired property.
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
Labeled the containers statuses, observed failures, added the default label as the initialization point, tests passed again.
Built Spark, ran on K8s cluster verified no NPE in driver log.
Closes#31071 from holdenk/SPARK-34018-finishedExecutorWithRunningSidecar-doesnt-correctly-constructt-the-test-case.
Authored-by: Holden Karau <hkarau@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
Skip files if they are binary or very large to fit the configMap's max size.
### Why are the changes needed?
Config map cannot hold binary files and there is also a limit on how much data a configMap can hold.
This limit can be configured by the k8s cluster admin. This PR, skips such files (with a warning) instead of failing with weird runtime errors.
If such files are not skipped, then it would result in mount errors or encoding errors (if binary files are submitted).
### Does this PR introduce _any_ user-facing change?
yes, in simple words avoids possible errors due to negligence (for example, placing a large file or a binary file in SPARK_CONF_DIR) and thus improves user experience.
### How was this patch tested?
Added relevant tests and improved existing tests.
Closes#30472 from ScrapCodes/SPARK-32221/avoid-conf-propagate-errors.
Lead-authored-by: Prashant Sharma <prashsh1@in.ibm.com>
Co-authored-by: Prashant Sharma <prashant@apache.org>
Signed-off-by: Prashant Sharma <prashsh1@in.ibm.com>
### What changes were proposed in this pull request?
Switch log level from warn to debug when the spark container is not present in the pod's container statuses.
### Why are the changes needed?
There are many non-critical situations where the Spark container may not be present, and the warning log level is too high.
### Does this PR introduce _any_ user-facing change?
Log message change.
### How was this patch tested?
N/A
Closes#31047 from holdenk/SPARK-33874-follow-up.
Authored-by: Holden Karau <hkarau@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
For liveness check when checkAllContainers is not set, we check the liveness status of the Spark container if we can find it.
### Why are the changes needed?
Some environments may deploy long lived logs collecting side cars which outlive the Spark application. Just because they remain alive does not mean the Spark executor should keep running.
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
Extended the existing pod status tests.
Closes#30892 from holdenk/SPARK-33874-handle-long-lived-sidecars.
Lead-authored-by: Holden Karau <hkarau@apple.com>
Co-authored-by: Holden Karau <holden@pigscanfly.ca>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This is a simple change to support allocating a specified amount of overhead memory for the driver's mesos container. This is already supported for executors.
### Why are the changes needed?
This is needed to keep the driver process from exceeding memory limits and being killed off when running on mesos.
### Does this PR introduce _any_ user-facing change?
Yes, it adds a `spark.mesos.driver.memoryOverhead` configuration option. Documentation changes for this option are included in the PR.
### How was this patch tested?
Test cases covering allocation of driver memory overhead are included in the changes.
### Other notes
This is a second attempt to get this change reviewed, accepted and merged. The original pull request was closed as stale back in January: https://github.com/apache/spark/pull/21006.
For this pull request, I took the original change by pmackles, rebased it onto the current master branch, and added a test case that was requested in the original code review.
I'm happy to make any further edits or do anything needed so that this can be included in a future spark release. I keep having to build custom spark distributions so that we can use spark within our mesos clusters.
Closes#30739 from dmcwhorter/dmcwhorter-SPARK-22256.
Lead-authored-by: David McWhorter <david_mcwhorter@premierinc.com>
Co-authored-by: Paul Mackles <pmackles@adobe.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
This PR proposes:
- Respect `PYSPARK_PYTHON` and `PYSPARK_DRIVER_PYTHON` environment variables, or `spark.pyspark.python` and `spark.pyspark.driver.python` configurations in Kubernates just like other cluster types in Spark.
- Depreate `spark.kubernetes.pyspark.pythonVersion` and guide users to set the environment variables and configurations for Python executables.
NOTE that `spark.kubernetes.pyspark.pythonVersion` is already a no-op configuration without this PR. Default is `3` and other values are disallowed.
- In order for Python executable settings to be consistently used, fix `spark.archives` option to unpack into the current working directory in the driver of Kubernates' cluster mode. This behaviour is identical with Yarn's cluster mode. By doing this, users can leverage Conda or virtuenenv in cluster mode as below:
```python
conda create -y -n pyspark_conda_env -c conda-forge pyarrow pandas conda-pack
conda activate pyspark_conda_env
conda pack -f -o pyspark_conda_env.tar.gz
PYSPARK_PYTHON=./environment/bin/python spark-submit --archives pyspark_conda_env.tar.gz#environment app.py
```
- Removed several unused or useless codes such as `extractS3Key` and `renameResourcesToLocalFS`
### Why are the changes needed?
- To provide a consistent support of PySpark by using `PYSPARK_PYTHON` and `PYSPARK_DRIVER_PYTHON` environment variables, or `spark.pyspark.python` and `spark.pyspark.driver.python` configurations.
- To provide Conda and virtualenv support via `spark.archives` options.
### Does this PR introduce _any_ user-facing change?
Yes:
- `spark.kubernetes.pyspark.pythonVersion` is deprecated.
- `PYSPARK_PYTHON` and `PYSPARK_DRIVER_PYTHON` environment variables, and `spark.pyspark.python` and `spark.pyspark.driver.python` configurations are respected.
### How was this patch tested?
Manually tested via:
```bash
minikube delete
minikube start --cpus 12 --memory 16384
kubectl create namespace spark-integration-test
cat <<EOF | kubectl apply -f -
apiVersion: v1
kind: ServiceAccount
metadata:
name: spark
namespace: spark-integration-test
EOF
kubectl create clusterrolebinding spark-role --clusterrole=edit --serviceaccount=spark-integration-test:spark --namespace=spark-integration-test
dev/make-distribution.sh --pip --tgz -Pkubernetes
resource-managers/kubernetes/integration-tests/dev/dev-run-integration-tests.sh --spark-tgz `pwd`/spark-3.2.0-SNAPSHOT-bin-3.2.0.tgz --service-account spark --namespace spark-integration-test
```
Unittests were also added.
Closes#30735 from HyukjinKwon/SPARK-33748.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Add a developer API for custom driver & executor feature steps.
### Why are the changes needed?
While we allow templates for the basis of pod creation, some deployments need more flexibility in how the pods are configured. This adds a developer API for custom deployments.
### Does this PR introduce _any_ user-facing change?
New developer API.
### How was this patch tested?
Extended tests to verify custom step is applied when configured.
Closes#30206 from holdenk/SPARK-33261-allow-people-to-extend-pod-feature-steps.
Authored-by: Holden Karau <hkarau@apple.com>
Signed-off-by: Holden Karau <hkarau@apple.com>
### What changes were proposed in this pull request?
Check that the pod state is not pending or running even if there is a deletion timestamp.
### Why are the changes needed?
This can occur when the pod state and deletion timestamp are not updated by etcd in sync & we get a pod snapshot during an inconsistent view.
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
Manual testing with local version of Minikube on an overloaded computer that caused out of sync updates.
Closes#30693 from holdenk/SPARK-33716-decommissioning-race-condition-during-pod-snapshot.
Authored-by: Holden Karau <hkarau@apple.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
TO FIX flaky tests:
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/132345/testReport/
```
org.apache.spark.sql.hive.thriftserver.HiveThriftHttpServerSuite.JDBC query execution
org.apache.spark.sql.hive.thriftserver.HiveThriftHttpServerSuite.Checks Hive version
org.apache.spark.sql.hive.thriftserver.HiveThriftHttpServerSuite.SPARK-24829 Checks cast as float
```
The root cause here is a jar conflict issue.
`NewCookie.isHttpOnly` is not defined in the `jsr311-api.jar` which conflicts
The transitive artifact `jsr311-api.jar` of `hadoop-client` is excluded at the maven side. See https://issues.apache.org/jira/browse/SPARK-27179.
The Jenkins PR builder and Github Action use `SBT` as the compiler tool.
First, the exclusion rule from maven is not followed by sbt, so I was able to see `jsr311-api.jar` from maven cache to be added to the classpath directly. **This seems to be a bug of `sbt-pom-reader` plugin but I'm not that sure.**
Then I added an `ExcludeRule` for the `hive-thriftserver` module at the SBT side and did see the `jsr311-api.jar` gone, but the CI jobs still failed with the same error.
I added a trace log in ThriftHttpServlet
```s
ERROR ThriftHttpServlet: !!!!!!!!! Suspect???????? --->
file:/home/jenkins/workspace/SparkPullRequestBuilder/assembly/target/scala-2.12/jars/jsr311-api-1.1.1.jar
```
And the log pointed out that the assembly phase copied it to `assembly/target/scala-2.12/jars/` which will be added to the classpath too. With the help of SBT `dependencyTree` tool, I saw the `jsr311-api` again as a transitive of `jersery-core` from `yarn` module with a `test` scope. So **This seems to be another bug from the SBT side of the `sbt-assembly` plugin.** It copied a test scope transitive artifact to the assembly output.
In this PR, I defined some rules in SparkBuild.scala to bypass the potential bugs from the SBT side.
First, exclude the `jsr311` from all over the project and then add it back separately to the YARN module for SBT.
Additionally, the HiveThriftServerSuites was reflected for reducing flakiness too, but not related to the bugs I have found so far.
### Why are the changes needed?
fix test here
### Does this PR introduce _any_ user-facing change?
NO
### How was this patch tested?
passing jenkins and ga
Closes#30643 from yaooqinn/HiveThriftHttpServerSuite.
Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
### What changes were proposed in this pull request?
This PR updates `kubernetes/integration-tests/README.md`.
### Why are the changes needed?
To follow the current Hadoop profile (hadoop-3.2).
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
I have confirmed that the integration tests pass with the following command for both Hadoop 3.2 an 2.7.
```
build/mvn integration-test -am -pl :spark-kubernetes-integration-tests_2.12 \
-Pkubernetes \
-Pkubernetes-integration-tests \
-Dspark.kubernetes.test.imageTag=${IMAGE_TAG} \
-Dspark.kubernetes.test.imageRepo=docker.io/kubespark \
-Dspark.kubernetes.test.namespace=default \
-Dspark.kubernetes.test.deployMode=minikube \
-Dtest.include.tags=k8s
```
Closes#30726 from sarutak/update-kube-integ-readme.
Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
This PR changes `Minikube.scala` for Kubernetes integration tests to work with Minikube 1.9+.
`Minikube.scala` assumes that `apiserver.key` and `apiserver.crt` are in `~/.minikube/`.
But as of Minikube 1.9, they are in `~/.minikube/profiles/<profile>`.
### Why are the changes needed?
Currently, Kubernetes integration tests doesn't work with Minikube 1.9+.
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
I confirmed the following test passes.
```
$ build/sbt -Pkubernetes -Pkubernetes-integration-tests package 'kubernetes-integration-tests/testOnly -- -z "SparkPi with no"'
```
Closes#30700 from sarutak/minikube-1.9.
Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
Makes the location of the decommission script used in Kubernetes for graceful shutdown configurable.
### Why are the changes needed?
Some environments don't use the Spark image builder and instead mount the decompressed Spark distro. In those envs configuring the location of the decommissioning script is required.
### Does this PR introduce _any_ user-facing change?
New configuration parameter.
### How was this patch tested?
Existing decommissioning integration test.
Closes#30694 from holdenk/SPARK-33724-allow-decommissioning-script-location-to-be-configured.
Authored-by: Holden Karau <hkarau@apple.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
While building R docker image if we can't fetch the key from gnupg.net fall back to openpgp.org
### Why are the changes needed?
gnupg.net key servers are flaky and sometimes fail to resolve or return keys.
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
Tried to add key on my desktop, it failed, then tried to add key with openpgp.org and it succeed.
Closes#30696 from holdenk/SPARK-33727-gnupg-server-is-flaky.
Authored-by: Holden Karau <hkarau@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This change make InterruptedIOException to be treated as InterruptedException when closing YarnClientSchedulerBackend, which doesn't log error with "YARN application has exited unexpectedly xxx"
### Why are the changes needed?
For YarnClient mode, when stopping YarnClientSchedulerBackend, it first tries to interrupt Yarn application monitor thread. In MonitorThread.run() it catches InterruptedException to gracefully response to stopping request.
But client.monitorApplication method also throws InterruptedIOException when the hadoop rpc call is calling. In this case, MonitorThread will not know it is interrupted, a Yarn App failed is returned with "Failed to contact YARN for application xxxxx; YARN application has exited unexpectedly with state xxxxx" is logged with error level. which confuse user a lot.
### Does this PR introduce _any_ user-facing change?
Yes
### How was this patch tested?
very simple patch, seems no need?
Closes#30617 from sqlwindspeaker/yarn-client-interrupt-monitor.
Authored-by: suqilong <suqilong@qiyi.com>
Signed-off-by: Mridul Muralidharan <mridul<at>gmail.com>
### What changes were proposed in this pull request?
Fix flaky test "Verify logging configuration is picked from the provided SPARK_CONF_DIR/log4j.properties."
The test is flaking, with multiple flaked instances - the reason for the failure has been similar to:
```
The code passed to eventually never returned normally. Attempted 109 times over 3.0079882413999997 minutes. Last failure message: Failure executing: GET at:
https://192.168.39.167:8443/api/v1/namespaces/b37fc72a991b49baa68a2eaaa1516463/pods/spark-pi-97a9bc76308e7fe3-exec-1/log?pretty=false. Message: pods "spark-pi-97a9bc76308e7fe3-exec-1" not found. Received status: Status(apiVersion=v1, code=404, details=StatusDetails(causes=[], group=null, kind=pods, name=spark-pi-97a9bc76308e7fe3-exec-1, retryAfterSeconds=null, uid=null, additionalProperties={}), kind=Status, message=pods "spark-pi-97a9bc76308e7fe3-exec-1" not found, metadata=ListMeta(_continue=null, remainingItemCount=null, resourceVersion=null, selfLink=null, additionalProperties={}), reason=NotFound, status=Failure, additionalProperties={}).. (KubernetesSuite.scala:402)
```
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder-K8s/36854/consolehttps://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder-K8s/36852/consolehttps://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder-K8s/36850/consolehttps://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder-K8s/36848/console
From the above failures, it seems, that executor finishes too quickly and is removed by spark before the test can complete.
So, in order to mitigate this situation, one way is to turn on the flag
"spark.kubernetes.executor.deleteOnTermination"
### Why are the changes needed?
Fixes a flaky test.
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
Existing tests.
May be a few runs of jenkins integration test, may reveal if the problem is resolved or not.
Closes#30616 from ScrapCodes/SPARK-33668/fix-flaky-k8s-integration-test.
Authored-by: Prashant Sharma <prashsh1@in.ibm.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
This PR aims to update `master` branch version to 3.2.0-SNAPSHOT.
### Why are the changes needed?
Start to prepare Apache Spark 3.2.0.
### Does this PR introduce _any_ user-facing change?
N/A.
### How was this patch tested?
Pass the CIs.
Closes#30606 from dongjoon-hyun/SPARK-3.2.
Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
This PR proposes to make `spark.archives` configuration working in Kubernates.
It works without a problem in standalone cluster but there seems a bug in Kubernates.
It fails to fetch the file on the driver side as below:
```
20/12/03 13:33:53 INFO SparkContext: Added JAR file:/tmp/spark-75004286-c83a-4369-b624-14c5d2d2a748/spark-examples_2.12-3.1.0-SNAPSHOT.jar at spark://spark-test-app-48ae737628cee6f8-driver-svc.spark-integration-test.svc:7078/jars/spark-examples_2.12-3.1.0-SNAPSHOT.jar with timestamp 1607002432558
20/12/03 13:33:53 INFO SparkContext: Added archive file:///tmp/tmp4542734800151332666.txt.tar.gz#test_tar_gz at spark://spark-test-app-48ae737628cee6f8-driver-svc.spark-integration-test.svc:7078/files/tmp4542734800151332666.txt.tar.gz with timestamp 1607002432558
20/12/03 13:33:53 INFO TransportClientFactory: Successfully created connection to spark-test-app-48ae737628cee6f8-driver-svc.spark-integration-test.svc/172.17.0.4:7078 after 83 ms (47 ms spent in bootstraps)
20/12/03 13:33:53 INFO Utils: Fetching spark://spark-test-app-48ae737628cee6f8-driver-svc.spark-integration-test.svc:7078/files/tmp4542734800151332666.txt.tar.gz to /tmp/spark-66573e24-27a3-427c-99f4-36f06d9e9cd5/fetchFileTemp2665785666227461849.tmp
20/12/03 13:33:53 ERROR SparkContext: Error initializing SparkContext.
java.lang.RuntimeException: Stream '/files/tmp4542734800151332666.txt.tar.gz' was not found.
at org.apache.spark.network.client.TransportResponseHandler.handle(TransportResponseHandler.java:242)
at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:142)
at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:53)
```
This is because `spark.archives` was not actually added on the driver side correctly. The changes here fix it by adding and resolving URIs correctly.
### Why are the changes needed?
`spark.archives` feature can be leveraged for many things such as Conda support. We should make it working in Kubernates as well.
This is a bug fix too.
### Does this PR introduce _any_ user-facing change?
No, this feature is not out yet.
### How was this patch tested?
I manually tested with Minikube 1.15.1. For an environment issue (?), I had to use a custom namespace, service account and roles. `default` service account does not work for me and complains it doesn't have permissions to get/list pods, etc.
```bash
minikube delete
minikube start --cpus 12 --memory 16384
kubectl create namespace spark-integration-test
cat <<EOF | kubectl apply -f -
apiVersion: v1
kind: ServiceAccount
metadata:
name: spark
namespace: spark-integration-test
EOF
kubectl create clusterrolebinding spark-role --clusterrole=edit --serviceaccount=spark-integration-test:spark --namespace=spark-integration-test
dev/make-distribution.sh --pip --tgz -Pkubernetes
resource-managers/kubernetes/integration-tests/dev/dev-run-integration-tests.sh --spark-tgz `pwd`/spark-3.1.0-SNAPSHOT-bin-3.2.0.tgz --service-account spark --namespace spark-integration-test
```
Closes#30581 from HyukjinKwon/SPARK-33615.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Allow k8s integration tests to assert both driver and executor logs for expected log(s)
### Why are the changes needed?
Some of the tests will be able to provide full coverage of the use case, by asserting both driver and executor logs.
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
TBD
Closes#30568 from ScrapCodes/expectedDriverLogChanges.
Authored-by: Prashant Sharma <prashsh1@in.ibm.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
As described in SPARK-33557, `HeartbeatReceiver` and `MesosCoarseGrainedSchedulerBackend` will always use `Network.NETWORK_TIMEOUT.defaultValueString` as value of `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` when we configure `NETWORK_TIMEOUT` without configure `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT`, this is different from the relationship described in `configuration.md`.
To fix this problem，the main change of this pr as follow:
- Remove the explicitly default value of `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT`
- Use actual value of `NETWORK_TIMEOUT` as `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` when `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` not configured in `HeartbeatReceiver` and `MesosCoarseGrainedSchedulerBackend`
### Why are the changes needed?
To ensure the relationship between `NETWORK_TIMEOUT` and `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` as we described in `configuration.md`
### Does this PR introduce _any_ user-facing change?
No
### How was this patch tested?
- Pass the Jenkins or GitHub Action
- Manual test configure `NETWORK_TIMEOUT` and `STORAGE_BLOCKMANAGER_HEARTBEAT_TIMEOUT` locally
Closes#30547 from LuciferYang/SPARK-33557.
Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This reverts commit SPARK-33212 (cb3fa6c936) mostly with three exceptions:
1. `SparkSubmitUtils` was updated recently by SPARK-33580
2. `resource-managers/yarn/pom.xml` was updated recently by SPARK-33104 to add `hadoop-yarn-server-resourcemanager` test dependency.
3. Adjust `com.fasterxml.jackson.module:jackson-module-jaxb-annotations` dependency in K8s module which is updated recently by SPARK-33471.
### Why are the changes needed?
According to [HADOOP-16080](https://issues.apache.org/jira/browse/HADOOP-16080) since Apache Hadoop 3.1.1, `hadoop-aws` doesn't work with `hadoop-client-api`. It fails at write operation like the following.
**1. Spark distribution with `-Phadoop-cloud`**
```scala
$ bin/spark-shell --conf spark.hadoop.fs.s3a.access.key=$AWS_ACCESS_KEY_ID --conf spark.hadoop.fs.s3a.secret.key=$AWS_SECRET_ACCESS_KEY
20/11/30 23:01:24 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).
Spark context available as 'sc' (master = local[*], app id = local-1606806088715).
Spark session available as 'spark'.
Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
/___/ .__/\_,_/_/ /_/\_\ version 3.1.0-SNAPSHOT
/_/
Using Scala version 2.12.10 (OpenJDK 64-Bit Server VM, Java 1.8.0_272)
Type in expressions to have them evaluated.
Type :help for more information.
scala> spark.read.parquet("s3a://dongjoon/users.parquet").show
20/11/30 23:01:34 WARN MetricsConfig: Cannot locate configuration: tried hadoop-metrics2-s3a-file-system.properties,hadoop-metrics2.properties
+------+--------------+----------------+
| name|favorite_color|favorite_numbers|
+------+--------------+----------------+
|Alyssa| null| [3, 9, 15, 20]|
| Ben| red| []|
+------+--------------+----------------+
scala> Seq(1).toDF.write.parquet("s3a://dongjoon/out.parquet")
20/11/30 23:02:14 ERROR Executor: Exception in task 0.0 in stage 2.0 (TID 2)/ 1]
java.lang.NoSuchMethodError: org.apache.hadoop.util.SemaphoredDelegatingExecutor.<init>(Lcom/google/common/util/concurrent/ListeningExecutorService;IZ)V
```
**2. Spark distribution without `-Phadoop-cloud`**
```scala
$ bin/spark-shell --conf spark.hadoop.fs.s3a.access.key=$AWS_ACCESS_KEY_ID --conf spark.hadoop.fs.s3a.secret.key=$AWS_SECRET_ACCESS_KEY -c spark.eventLog.enabled=true -c spark.eventLog.dir=s3a://dongjoon/spark-events/ --packages org.apache.hadoop:hadoop-aws:3.2.0,org.apache.hadoop:hadoop-common:3.2.0
...
java.lang.NoSuchMethodError: org.apache.hadoop.util.SemaphoredDelegatingExecutor.<init>(Lcom/google/common/util/concurrent/ListeningExecutorService;IZ)V
at org.apache.hadoop.fs.s3a.S3AFileSystem.create(S3AFileSystem.java:772)
```
### Does this PR introduce _any_ user-facing change?
No.
### How was this patch tested?
Pass the CI.
Closes#30508 from dongjoon-hyun/SPARK-33212-REVERT.
Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
TL;DR:
- This PR completes the support of archives in Spark itself instead of Yarn-only
- It makes `--archives` option work in other cluster modes too and adds `spark.archives` configuration.
- After this PR, PySpark users can leverage Conda to ship Python packages together as below:
```python
conda create -y -n pyspark_env -c conda-forge pyarrow==2.0.0 pandas==1.1.4 conda-pack==0.5.0
conda activate pyspark_env
conda pack -f -o pyspark_env.tar.gz
PYSPARK_DRIVER_PYTHON=python PYSPARK_PYTHON=./environment/bin/python pyspark --archives pyspark_env.tar.gz#environment
```
- Issue a warning that undocumented and hidden behavior of partial archive handling in `spark.files` / `SparkContext.addFile` will be deprecated, and users can use `spark.archives` and `SparkContext.addArchive`.
This PR proposes to add Spark's native `--archives` in Spark submit, and `spark.archives` configuration. Currently, both are supported only in Yarn mode:
```bash
./bin/spark-submit --help
```
```
Options:
...
Spark on YARN only:
--queue QUEUE_NAME The YARN queue to submit to (Default: "default").
--archives ARCHIVES Comma separated list of archives to be extracted into the
working directory of each executor.
```
This `archives` feature is useful often when you have to ship a directory and unpack into executors. One example is native libraries to use e.g. JNI. Another example is to ship Python packages together by Conda environment.
Especially for Conda, PySpark currently does not have a nice way to ship a package that works in general, please see also https://hyukjin-spark.readthedocs.io/en/stable/user_guide/python_packaging.html#using-zipped-virtual-environment (PySpark new documentation demo for 3.1.0).
The neatest way is arguably to use Conda environment by shipping zipped Conda environment but this is currently dependent on this archive feature. NOTE that we are able to use `spark.files` by relying on its undocumented behaviour that untars `tar.gz` but I don't think we should document such ways and promote people to more rely on it.
Also, note that this PR does not target to add the feature parity of `spark.files.overwrite`, `spark.files.useFetchCache`, etc. yet. I documented that this is an experimental feature as well.
### Why are the changes needed?
To complete the feature parity, and to provide a better support of shipping Python libraries together with Conda env.
### Does this PR introduce _any_ user-facing change?
Yes, this makes `--archives` works in Spark instead of Yarn-only, and adds a new configuration `spark.archives`.
### How was this patch tested?
I added unittests. Also, manually tested in standalone cluster, local-cluster, and local modes.
Closes#30486 from HyukjinKwon/native-archive.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This is a follow-on to PR #30096 which initially added support for printing direct links to the driver stdout/stderr logs from the application report output in `yarn.Client` using the `spark.yarn.includeDriverLogsLink` configuration. That PR made use of the ResourceManager's REST APIs to fetch the necessary information to construct the links. This PR proposes removing the dependency on the REST API, since the new logic is the only place in `yarn.Client` which makes use of this API, and instead leverages the RPC API via `YarnClient`, which brings the code in line with the rest of `yarn.Client`.
### Why are the changes needed?
While the old logic worked okay when running a Spark application in a "standard" environment with full access to Kerberos credentials, it can fail when run in an environment with restricted Kerberos credentials. In our case, this environment is represented by [Azkaban](https://azkaban.github.io/), but it likely affects other job scheduling systems as well. In such an environment, the application has delegation tokens which enabled it to communicate with services such as YARN, but the RM REST API is not typically covered by such delegation tokens (note that although YARN does actually support accessing the RM REST API via a delegation token as documented [here](https://hadoop.apache.org/docs/current/hadoop-yarn/hadoop-yarn-site/ResourceManagerRest.html#Cluster_Delegation_Tokens_API), it is a new feature in alpha phase, and most deployments are likely not retrieving this token today).
Besides this enhancement, leveraging the `YarnClient` APIs greatly simplifies the processing logic, such as removing all JSON parsing.
### Does this PR introduce _any_ user-facing change?
Very minimal user-facing changes on top of PR #30096. Basically expands the scope of environments in which that feature will operate correctly.
### How was this patch tested?
In addition to redoing the `spark-submit` testing as mentioned in PR #30096, I also tested this logic in a restricted-credentials environment (Azkaban). It succeeds where the previous logic would fail with a 401 error.
Closes#30450 from xkrogen/xkrogen-SPARK-33185-driverlogs-followon.
Authored-by: Erik Krogen <xkrogen@apache.org>
Signed-off-by: Mridul Muralidharan <mridul<at>gmail.com>
### What changes were proposed in this pull request?
This PR intends to fix typos in the sub-modules:
* `R`
* `common`
* `dev`
* `mlib`
* `external`
* `project`
* `streaming`
* `resource-managers`
* `python`
Split per srowen https://github.com/apache/spark/pull/30323#issuecomment-728981618
NOTE: The misspellings have been reported at 706a726f87 (commitcomment-44064356)
### Why are the changes needed?
Misspelled words make it harder to read / understand content.
### Does this PR introduce _any_ user-facing change?
There are various fixes to documentation, etc...
### How was this patch tested?
No testing was performed
Closes#30402 from jsoref/spelling-R_common_dev_mlib_external_project_streaming_resource-managers_python.
Authored-by: Josh Soref <jsoref@users.noreply.github.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
### What changes were proposed in this pull request?
This PR aims the followings.
1. Upgrade from Scala 2.13.3 to 2.13.4 for Apache Spark 3.1
2. Fix exhaustivity issues in both Scala 2.12/2.13 (Scala 2.13.4 requires this for compilation.)
3. Enforce the improved exhaustive check by using the existing Scala 2.13 GitHub Action compilation job.
### Why are the changes needed?
Scala 2.13.4 is a maintenance release for 2.13 line and improves JDK 15 support.
- https://github.com/scala/scala/releases/tag/v2.13.4
Also, it improves exhaustivity check.
- https://github.com/scala/scala/pull/9140 (Check exhaustivity of pattern matches with "if" guards and custom extractors)
- https://github.com/scala/scala/pull/9147 (Check all bindings exhaustively, e.g. tuples components)
### Does this PR introduce _any_ user-facing change?
Yep. Although it's a maintenance version change, it's a Scala version change.
### How was this patch tested?
Pass the CIs and do the manual testing.
- Scala 2.12 CI jobs(GitHub Action/Jenkins UT/Jenkins K8s IT) to check the validity of code change.
- Scala 2.13 Compilation job to check the compilation
Closes#30455 from dongjoon-hyun/SCALA_3.13.
Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
### What changes were proposed in this pull request?
Driver side changes for coordinating push based shuffle by selecting external shuffle services for merging partitions.
This PR includes changes related to `ShuffleMapStage` preparation which is selection of merger locations and initializing them as part of `ShuffleDependency`.
Currently this code is not used as some of the changes would come subsequently as part of https://issues.apache.org/jira/browse/SPARK-32917 (shuffle blocks push as part of `ShuffleMapTask`), https://issues.apache.org/jira/browse/SPARK-32918 (support for finalize API) and https://issues.apache.org/jira/browse/SPARK-32920 (finalization of push/merge phase). This is why the tests here are also partial, once these above mentioned changes are raised as PR we will have enough tests for DAGScheduler piece of code as well.
### Why are the changes needed?
Added a new API in `SchedulerBackend` to get merger locations for push based shuffle. This is currently implemented for Yarn and other cluster managers can have separate implementations which is why a new API is introduced.
### Does this PR introduce _any_ user-facing change?
Yes, user facing config to enable push based shuffle is introduced
### How was this patch tested?
Added unit tests partially and some of the changes in DAGScheduler depends on future changes, DAGScheduler tests will be added along with those changes.
Lead-authored-by: Venkata krishnan Sowrirajan vsowrirajanlinkedin.com
Co-authored-by: Min Shen mshenlinkedin.com
Closes#30164 from venkata91/upstream-SPARK-32919.
Lead-authored-by: Venkata krishnan Sowrirajan <vsowrirajan@linkedin.com>
Co-authored-by: Min Shen <mshen@linkedin.com>
Signed-off-by: Mridul Muralidharan <mridul<at>gmail.com>
