Right now the spark shuffle service has a cache for index files. It is based on a # of files cached (spark.shuffle.service.index.cache.entries). This can cause issues if people have a lot of reducers because the size of each entry can fluctuate based on the # of reducers.
We saw an issues with a job that had 170000 reducers and it caused NM with spark shuffle service to use 700-800MB or memory in NM by itself.
We should change this cache to be memory based and only allow a certain memory size used. When I say memory based I mean the cache should have a limit of say 100MB.
https://issues.apache.org/jira/browse/SPARK-21501
Manual Testing with 170000 reducers has been performed with cache loaded up to max 100MB default limit, with each shuffle index file of size 1.3MB. Eviction takes place as soon as the total cache size reaches the 100MB limit and the objects will be ready for garbage collection there by avoiding NM to crash. No notable difference in runtime has been observed.
Author: Sanket Chintapalli <schintap@yahoo-inc.com>
Closes#18940 from redsanket/SPARK-21501.
## What changes were proposed in this pull request?
Add a new listener event when a speculative task is created and notify it to ExecutorAllocationManager for requesting more executor.
## How was this patch tested?
- Added Unittests.
- For the test snippet in the jira:
val n = 100
val someRDD = sc.parallelize(1 to n, n)
someRDD.mapPartitionsWithIndex( (index: Int, it: Iterator[Int]) => {
if (index == 1) {
Thread.sleep(Long.MaxValue) // fake long running task(s)
}
it.toList.map(x => index + ", " + x).iterator
}).collect
With this code change, spark indicates 101 jobs are running (99 succeeded, 2 running and 1 is speculative job)
Author: Jane Wang <janewang@fb.com>
Closes#18492 from janewangfb/speculated_task_not_launched.
There're two code in Launcher and SparkSubmit will will explicitly list all the Spark submodules, newly added kvstore module is missing in this two parts, so submitting a minor PR to fix this.
Author: jerryshao <sshao@hortonworks.com>
Closes#19014 from jerryshao/missing-kvstore.
## Problem
When an RDD (particularly with a low item-per-partition ratio) is repartitioned to numPartitions = power of 2, the resulting partitions are very uneven-sized, due to using fixed seed to initialize PRNG, and using the PRNG only once. See details in https://issues.apache.org/jira/browse/SPARK-21782
## What changes were proposed in this pull request?
Instead of directly using `0, 1, 2,...` seeds to initialize `Random`, hash them with `scala.util.hashing.byteswap32()`.
## How was this patch tested?
`build/mvn -Dtest=none -DwildcardSuites=org.apache.spark.rdd.RDDSuite test`
Author: Sergey Serebryakov <sserebryakov@tesla.com>
Closes#18990 from megaserg/repartition-skew.
## What changes were proposed in this pull request?
Add Kerberos Support to Mesos. This includes kinit and --keytab support, but does not include delegation token renewal.
## How was this patch tested?
Manually against a Secure DC/OS Apache HDFS cluster.
Author: ArtRand <arand@soe.ucsc.edu>
Author: Michael Gummelt <mgummelt@mesosphere.io>
Closes#18519 from mgummelt/SPARK-16742-kerberos.
## What changes were proposed in this pull request?
Set isolated to false while using builtin hive jars and `SessionState.get` returns a `CliSessionState` instance.
## How was this patch tested?
1 Unit Tests
2 Manually verified: `hive.exec.strachdir` was only created once because of reusing cliSessionState
```java
➜ spark git:(SPARK-21428) ✗ bin/spark-sql --conf spark.sql.hive.metastore.jars=builtin
log4j:WARN No appenders could be found for logger (org.apache.hadoop.util.Shell).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Using Spark's default log4j profile: org/apache/spark/log4j-defaults.properties
17/07/16 23:59:27 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
17/07/16 23:59:27 INFO HiveMetaStore: 0: Opening raw store with implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
17/07/16 23:59:27 INFO ObjectStore: ObjectStore, initialize called
17/07/16 23:59:28 INFO Persistence: Property hive.metastore.integral.jdo.pushdown unknown - will be ignored
17/07/16 23:59:28 INFO Persistence: Property datanucleus.cache.level2 unknown - will be ignored
17/07/16 23:59:29 INFO ObjectStore: Setting MetaStore object pin classes with hive.metastore.cache.pinobjtypes="Table,StorageDescriptor,SerDeInfo,Partition,Database,Type,FieldSchema,Order"
17/07/16 23:59:30 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MFieldSchema" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:30 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MOrder" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:31 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MFieldSchema" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:31 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MOrder" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:31 INFO MetaStoreDirectSql: Using direct SQL, underlying DB is DERBY
17/07/16 23:59:31 INFO ObjectStore: Initialized ObjectStore
17/07/16 23:59:31 WARN ObjectStore: Version information not found in metastore. hive.metastore.schema.verification is not enabled so recording the schema version 1.2.0
17/07/16 23:59:31 WARN ObjectStore: Failed to get database default, returning NoSuchObjectException
17/07/16 23:59:32 INFO HiveMetaStore: Added admin role in metastore
17/07/16 23:59:32 INFO HiveMetaStore: Added public role in metastore
17/07/16 23:59:32 INFO HiveMetaStore: No user is added in admin role, since config is empty
17/07/16 23:59:32 INFO HiveMetaStore: 0: get_all_databases
17/07/16 23:59:32 INFO audit: ugi=Kent ip=unknown-ip-addr cmd=get_all_databases
17/07/16 23:59:32 INFO HiveMetaStore: 0: get_functions: db=default pat=*
17/07/16 23:59:32 INFO audit: ugi=Kent ip=unknown-ip-addr cmd=get_functions: db=default pat=*
17/07/16 23:59:32 INFO Datastore: The class "org.apache.hadoop.hive.metastore.model.MResourceUri" is tagged as "embedded-only" so does not have its own datastore table.
17/07/16 23:59:32 INFO SessionState: Created local directory: /var/folders/k2/04p4k4ws73l6711h_mz2_tq00000gn/T/beea7261-221a-4711-89e8-8b12a9d37370_resources
17/07/16 23:59:32 INFO SessionState: Created HDFS directory: /tmp/hive/Kent/beea7261-221a-4711-89e8-8b12a9d37370
17/07/16 23:59:32 INFO SessionState: Created local directory: /var/folders/k2/04p4k4ws73l6711h_mz2_tq00000gn/T/Kent/beea7261-221a-4711-89e8-8b12a9d37370
17/07/16 23:59:32 INFO SessionState: Created HDFS directory: /tmp/hive/Kent/beea7261-221a-4711-89e8-8b12a9d37370/_tmp_space.db
17/07/16 23:59:32 INFO SparkContext: Running Spark version 2.3.0-SNAPSHOT
17/07/16 23:59:32 INFO SparkContext: Submitted application: SparkSQL::10.0.0.8
17/07/16 23:59:32 INFO SecurityManager: Changing view acls to: Kent
17/07/16 23:59:32 INFO SecurityManager: Changing modify acls to: Kent
17/07/16 23:59:32 INFO SecurityManager: Changing view acls groups to:
17/07/16 23:59:32 INFO SecurityManager: Changing modify acls groups to:
17/07/16 23:59:32 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(Kent); groups with view permissions: Set(); users with modify permissions: Set(Kent); groups with modify permissions: Set()
17/07/16 23:59:33 INFO Utils: Successfully started service 'sparkDriver' on port 51889.
17/07/16 23:59:33 INFO SparkEnv: Registering MapOutputTracker
17/07/16 23:59:33 INFO SparkEnv: Registering BlockManagerMaster
17/07/16 23:59:33 INFO BlockManagerMasterEndpoint: Using org.apache.spark.storage.DefaultTopologyMapper for getting topology information
17/07/16 23:59:33 INFO BlockManagerMasterEndpoint: BlockManagerMasterEndpoint up
17/07/16 23:59:33 INFO DiskBlockManager: Created local directory at /private/var/folders/k2/04p4k4ws73l6711h_mz2_tq00000gn/T/blockmgr-9cfae28a-01e9-4c73-a1f1-f76fa52fc7a5
17/07/16 23:59:33 INFO MemoryStore: MemoryStore started with capacity 366.3 MB
17/07/16 23:59:33 INFO SparkEnv: Registering OutputCommitCoordinator
17/07/16 23:59:33 INFO Utils: Successfully started service 'SparkUI' on port 4040.
17/07/16 23:59:33 INFO SparkUI: Bound SparkUI to 0.0.0.0, and started at http://10.0.0.8:4040
17/07/16 23:59:33 INFO Executor: Starting executor ID driver on host localhost
17/07/16 23:59:33 INFO Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 51890.
17/07/16 23:59:33 INFO NettyBlockTransferService: Server created on 10.0.0.8:51890
17/07/16 23:59:33 INFO BlockManager: Using org.apache.spark.storage.RandomBlockReplicationPolicy for block replication policy
17/07/16 23:59:33 INFO BlockManagerMaster: Registering BlockManager BlockManagerId(driver, 10.0.0.8, 51890, None)
17/07/16 23:59:33 INFO BlockManagerMasterEndpoint: Registering block manager 10.0.0.8:51890 with 366.3 MB RAM, BlockManagerId(driver, 10.0.0.8, 51890, None)
17/07/16 23:59:33 INFO BlockManagerMaster: Registered BlockManager BlockManagerId(driver, 10.0.0.8, 51890, None)
17/07/16 23:59:33 INFO BlockManager: Initialized BlockManager: BlockManagerId(driver, 10.0.0.8, 51890, None)
17/07/16 23:59:34 INFO SharedState: Setting hive.metastore.warehouse.dir ('null') to the value of spark.sql.warehouse.dir ('file:/Users/Kent/Documents/spark/spark-warehouse').
17/07/16 23:59:34 INFO SharedState: Warehouse path is 'file:/Users/Kent/Documents/spark/spark-warehouse'.
17/07/16 23:59:34 INFO HiveUtils: Initializing HiveMetastoreConnection version 1.2.1 using Spark classes.
17/07/16 23:59:34 INFO HiveClientImpl: Warehouse location for Hive client (version 1.2.2) is /user/hive/warehouse
17/07/16 23:59:34 INFO HiveMetaStore: 0: get_database: default
17/07/16 23:59:34 INFO audit: ugi=Kent ip=unknown-ip-addr cmd=get_database: default
17/07/16 23:59:34 INFO HiveClientImpl: Warehouse location for Hive client (version 1.2.2) is /user/hive/warehouse
17/07/16 23:59:34 INFO HiveMetaStore: 0: get_database: global_temp
17/07/16 23:59:34 INFO audit: ugi=Kent ip=unknown-ip-addr cmd=get_database: global_temp
17/07/16 23:59:34 WARN ObjectStore: Failed to get database global_temp, returning NoSuchObjectException
17/07/16 23:59:34 INFO HiveClientImpl: Warehouse location for Hive client (version 1.2.2) is /user/hive/warehouse
17/07/16 23:59:34 INFO StateStoreCoordinatorRef: Registered StateStoreCoordinator endpoint
spark-sql>
```
cc cloud-fan gatorsmile
Author: Kent Yao <yaooqinn@hotmail.com>
Author: hzyaoqin <hzyaoqin@corp.netease.com>
Closes#18648 from yaooqinn/SPARK-21428.
## What changes were proposed in this pull request?
The patch lets spark web ui use FQDN as its hostname instead of ip address.
In current implementation, ip address of a driver host is set to DRIVER_HOST_ADDRESS. This becomes a problem when we enable SSL using "spark.ssl.enabled", "spark.ssl.trustStore" and "spark.ssl.keyStore" properties. When we configure these properties, spark web ui is launched with SSL enabled and the HTTPS server is configured with the custom SSL certificate you configured in these properties.
In this case, client gets javax.net.ssl.SSLPeerUnverifiedException exception when the client accesses the spark web ui because the client fails to verify the SSL certificate (Common Name of the SSL cert does not match with DRIVER_HOST_ADDRESS).
To avoid the exception, we should use FQDN of the driver host for DRIVER_HOST_ADDRESS.
Error message that client gets when the client accesses spark web ui:
javax.net.ssl.SSLPeerUnverifiedException: Certificate for <10.102.138.239> doesn't match any of the subject alternative names: []
## How was this patch tested?
manual tests
Author: Hideaki Tanaka <tanakah@amazon.com>
Closes#18846 from thideeeee/SPARK-21642.
## What changes were proposed in this pull request?
introduced `DiskBlockData`, a new implementation of `BlockData` representing a whole file.
this is somehow related to [SPARK-6236](https://issues.apache.org/jira/browse/SPARK-6236) as well
This class follows the implementation of `EncryptedBlockData` just without the encryption. hence:
* `toInputStream` is implemented using a `FileInputStream` (todo: encrypted version actually uses `Channels.newInputStream`, not sure if it's the right choice for this)
* `toNetty` is implemented in terms of `io.netty.channel.DefaultFileRegion`
* `toByteBuffer` fails for files larger than 2GB (same behavior of the original code, just postponed a bit), it also respects the same configuration keys defined by the original code to choose between memory mapping and simple file read.
## How was this patch tested?
added test to DiskStoreSuite and MemoryManagerSuite
Author: Eyal Farago <eyal@nrgene.com>
Closes#18855 from eyalfa/SPARK-3151.
## What changes were proposed in this pull request?
Right now spark lets go of executors when they are idle for the 60s (or configurable time). I have seen spark let them go when they are idle but they were really needed. I have seen this issue when the scheduler was waiting to get node locality but that takes longer than the default idle timeout. In these jobs the number of executors goes down really small (less than 10) but there are still like 80,000 tasks to run.
We should consider not allowing executors to idle timeout if they are still needed according to the number of tasks to be run.
## How was this patch tested?
Tested by manually adding executors to `executorsIdsToBeRemoved` list and seeing if those executors were removed when there are a lot of tasks and a high `numExecutorsTarget` value.
Code used
In `ExecutorAllocationManager.start()`
```
start_time = clock.getTimeMillis()
```
In `ExecutorAllocationManager.schedule()`
```
val executorIdsToBeRemoved = ArrayBuffer[String]()
if ( now > start_time + 1000 * 60 * 2) {
logInfo("--- REMOVING 1/2 of the EXECUTORS ---")
start_time += 1000 * 60 * 100
var counter = 0
for (x <- executorIds) {
counter += 1
if (counter == 2) {
counter = 0
executorIdsToBeRemoved += x
}
}
}
Author: John Lee <jlee2@yahoo-inc.com>
Closes#18874 from yoonlee95/SPARK-21656.
This version fixes a few issues in the import order checker; it provides
better error messages, and detects more improper ordering (thus the need
to change a lot of files in this patch). The main fix is that it correctly
complains about the order of packages vs. classes.
As part of the above, I moved some "SparkSession" import in ML examples
inside the "$example on$" blocks; that didn't seem consistent across
different source files to start with, and avoids having to add more on/off blocks
around specific imports.
The new scalastyle also seems to have a better header detector, so a few
license headers had to be updated to match the expected indentation.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#18943 from vanzin/SPARK-21731.
Currently the launcher handle does not monitor the child spark-submit
process it launches; this means that if the child exits with an error,
the handle's state will never change, and an application will not know
that the application has failed.
This change adds code to monitor the child process, and changes the
handle state appropriately when the child process exits.
Tested with added unit tests.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#18877 from vanzin/SPARK-17742.
## What changes were proposed in this pull request?
Fix the race condition when serializing TaskDescriptions and adding jars by keeping the set of jars and files for a TaskSet constant across the lifetime of the TaskSet. Otherwise TaskDescription serialization can produce an invalid serialization when new file/jars are added concurrently as the TaskDescription is serialized.
## How was this patch tested?
Additional unit test ensures jars/files contained in the TaskDescription remain constant throughout the lifetime of the TaskSet.
Author: Andrew Ash <andrew@andrewash.com>
Closes#18913 from ash211/SPARK-21563.
## What changes were proposed in this pull request?
Several links on the worker page do not work correctly with the proxy because:
1) They don't acknowledge the proxy
2) They use relative paths (unlike the Application Page which uses full paths)
This patch fixes that. It also fixes a mistake in the proxy's Location header parsing which caused it to incorrectly handle redirects.
## How was this patch tested?
I checked the validity of every link with the proxy on and off.
Author: Anderson Osagie <osagie@gmail.com>
Closes#18915 from aosagie/fix/proxy-links.
Fixes --packages flag for the stand-alone case in cluster mode. Adds to the driver classpath the jars that are resolved via ivy along with any other jars passed to `spark.jars`. Jars not resolved by ivy are downloaded explicitly to a tmp folder on the driver node. Similar code is available in SparkSubmit so we refactored part of it to use it at the DriverWrapper class which is responsible for launching driver in standalone cluster mode.
Note: In stand-alone mode `spark.jars` contains the user jar so it can be fetched later on at the executor side.
Manually by submitting a driver in cluster mode within a standalone cluster and checking if dependencies were resolved at the driver side.
Author: Stavros Kontopoulos <st.kontopoulos@gmail.com>
Closes#18630 from skonto/fix_packages_stand_alone_cluster.
## What changes were proposed in this pull request?
1. In Spark Web UI, the Details for Stage Page don't have a navigation bar at the bottom. When we drop down to the bottom, it is better for us to see a navi bar right there to go wherever we what.
2. Executor ID is not equivalent to Host, it may be better to separate them, and then we can group the tasks by Hosts .
## How was this patch tested?
manually test
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Kent Yao <yaooqinn@hotmail.com>
Closes#18893 from yaooqinn/SPARK-21675.
## What changes were proposed in this pull request?
This modification increases the timeout for `serveIterator` (which is not dynamically configurable). This fixes timeout issues in pyspark when using `collect` and similar functions, in cases where Python may take more than a couple seconds to connect.
See https://issues.apache.org/jira/browse/SPARK-21551
## How was this patch tested?
Ran the tests.
cc rxin
Author: peay <peay@protonmail.com>
Closes#18752 from peay/spark-21551.
## What changes were proposed in this pull request?
This pr updated `lz4-java` to the latest (v1.4.0) and removed custom `LZ4BlockInputStream`. We currently use custom `LZ4BlockInputStream` to read concatenated byte stream in shuffle. But, this functionality has been implemented in the latest lz4-java (https://github.com/lz4/lz4-java/pull/105). So, we might update the latest to remove the custom `LZ4BlockInputStream`.
Major diffs between the latest release and v1.3.0 in the master are as follows (62f7547abb...6d4693f562);
- fixed NPE in XXHashFactory similarly
- Don't place resources in default package to support shading
- Fixes ByteBuffer methods failing to apply arrayOffset() for array-backed
- Try to load lz4-java from java.library.path, then fallback to bundled
- Add ppc64le binary
- Add s390x JNI binding
- Add basic LZ4 Frame v1.5.0 support
- enable aarch64 support for lz4-java
- Allow unsafeInstance() for ppc64le archiecture
- Add unsafeInstance support for AArch64
- Support 64-bit JNI build on Solaris
- Avoid over-allocating a buffer
- Allow EndMark to be incompressible for LZ4FrameInputStream.
- Concat byte stream
## How was this patch tested?
Existing tests.
Author: Takeshi Yamamuro <yamamuro@apache.org>
Closes#18883 from maropu/SPARK-21276.
## What changes were proposed in this pull request?
Resources in Core - SparkSubmitArguments.scala, Spark-launcher - AbstractCommandBuilder.java, resource-managers- YARN - Client.scala are released
## How was this patch tested?
No new test cases added, Unit test have been passed
Author: vinodkc <vinod.kc.in@gmail.com>
Closes#18880 from vinodkc/br_fixresouceleak.
Signed-off-by: 10087686 <wang.jiaochunzte.com.cn>
## What changes were proposed in this pull request?
After Unit tests end，there should be call masterTracker.stop() to free resource;
(Please fill in changes proposed in this fix)
## How was this patch tested?
Run Unit tests;
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: 10087686 <wang.jiaochun@zte.com.cn>
Closes#18867 from wangjiaochun/mapout.
## What changes were proposed in this pull request?
Currently, each application and each worker creates their own proxy servlet. Each proxy servlet is backed by its own HTTP client and a relatively large number of selector threads. This is excessive but was fixed (to an extent) by https://github.com/apache/spark/pull/18437.
However, a single HTTP client (backed by a single selector thread) should be enough to handle all proxy requests. This PR creates a single proxy servlet no matter how many applications and workers there are.
## How was this patch tested?
.
The unit tests for rewriting proxied locations and headers were updated. I then spun up a 100 node cluster to ensure that proxy'ing worked correctly
jiangxb1987 Please let me know if there's anything else I can do to help push this thru. Thanks!
Author: Anderson Osagie <osagie@gmail.com>
Closes#18499 from aosagie/fix/minimize-proxy-threads.
The executor tab on Spark UI page shows task as completed when an executor process that is running that task is killed using the kill command.
Added the case ExecutorLostFailure which was previously not there, thus, the default case would be executed in which case, task would be marked as completed. This case will consider all those cases where executor connection to Spark Driver was lost due to killing the executor process, network connection etc.
## How was this patch tested?
Manually Tested the fix by observing the UI change before and after.
Before:
<img width="1398" alt="screen shot-before" src="https://user-images.githubusercontent.com/22228190/28482929-571c9cea-6e30-11e7-93dd-728de5cdea95.png">
After:
<img width="1385" alt="screen shot-after" src="https://user-images.githubusercontent.com/22228190/28482964-8649f5ee-6e30-11e7-91bd-2eb2089c61cc.png">
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: pgandhi <pgandhi@yahoo-inc.com>
Author: pgandhi999 <parthkgandhi9@gmail.com>
Closes#18707 from pgandhi999/master.
## What changes were proposed in this pull request?
We should reset numRecordsWritten to zero after DiskBlockObjectWriter.commitAndGet called.
Because when `revertPartialWritesAndClose` be called, we decrease the written records in `ShuffleWriteMetrics` . However, we decreased the written records to zero, this should be wrong, we should only decreased the number reords after the last `commitAndGet` called.
## How was this patch tested?
Modified existing test.
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Xianyang Liu <xianyang.liu@intel.com>
Closes#18830 from ConeyLiu/DiskBlockObjectWriter.
## What changes were proposed in this pull request?
When we use `bin/spark-sql` command configuring `--conf spark.hadoop.foo=bar`, the `SparkSQLCliDriver` initializes an instance of hiveconf, it does not add `foo->bar` to it.
this pr gets `spark.hadoop.*` properties from sysProps to this hiveconf
## How was this patch tested?
UT
Author: hzyaoqin <hzyaoqin@corp.netease.com>
Author: Kent Yao <yaooqinn@hotmail.com>
Closes#18668 from yaooqinn/SPARK-21451.
## What changes were proposed in this pull request?
This PR replaces #18623 to do some clean up.
Closes#18623
## How was this patch tested?
Jenkins
Author: Shixiong Zhu <shixiong@databricks.com>
Author: Andrey Taptunov <taptunov@amazon.com>
Closes#18848 from zsxwing/review-pr18623.
## What changes were proposed in this pull request?
As described in JIRA ticket, History page is taking ~1min to load for cases when amount of jobs is 10k+.
Most of the time is currently being spent on DOM manipulations and all additional costs implied by this (browser repaints and reflows).
PR's goal is not to change any behavior but to optimize time of History UI rendering:
1. The most costly operation is setting `innerHTML` for `duration` column within a loop, which is [extremely unperformant](https://jsperf.com/jquery-append-vs-html-list-performance/24). [Refactoring ](114943b21a) this helped to get page load time **down to 10-15s**
2. Second big gain bringing page load time **down to 4s** was [was achieved](f35fdcd5f1) by detaching table's DOM before parsing it with DataTables jQuery plugin.
3. Another chunk of improvements ([1](332b398db7), [2](0af596a547), [3](235f164178)) was focused on removing unnecessary DOM manipulations that in total contributed ~250ms to page load time.
## How was this patch tested?
Tested by existing Selenium tests in `org.apache.spark.deploy.history.HistoryServerSuite`.
Changes were also tested on Criteo's spark-2.1 fork with 20k+ number of rows in the table, reducing load time to 4s.
Author: Dmitry Parfenchik <d.parfenchik@criteo.com>
Author: Anna Savarin <a.savarin@criteo.com>
Closes#18783 from 2ooom/history-ui-perf-fix-upstream-master.
## What changes were proposed in this pull request?
In executor, toTaskFailedReason is converted to toTaskCommitDeniedReason to avoid the inconsistency of taskState. In JobProgressListener, add case TaskCommitDenied so that now the stage killed number is been incremented other than failed number.
This pull request is picked up from: https://github.com/apache/spark/pull/18070 using commit: ff93ade0248baf3793ab55659042f9d7b8efbdef
The case match for TaskCommitDenied is added incrementing the correct num of killed after pull/18070.
## How was this patch tested?
Run a normal speculative job and check the Stage UI page, should have no failed displayed.
Author: louis lyu <llyu@c02tk24rg8wl-lm.champ.corp.yahoo.com>
Closes#18819 from nlyu/SPARK-20713.
The code was failing to account for some cases when setting up log
redirection. For example, if a user redirected only stdout to a file,
the launcher code would leave stderr without redirection, which could
lead to child processes getting stuck because stderr wasn't being
read.
So detect cases where only one of the streams is redirected, and
redirect the other stream to the log as appropriate.
For the old "launch()" API, redirection of the unconfigured stream
only happens if the user has explicitly requested for log redirection.
Log redirection is on by default with "startApplication()".
Most of the change is actually adding new unit tests to make sure the
different cases work as expected. As part of that, I moved some tests
that were in the core/ module to the launcher/ module instead, since
they don't depend on spark-submit.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#18696 from vanzin/SPARK-21490.
### What changes were proposed in this pull request?
The original error message is pretty confusing. It is unable to tell which number is `number of partitions` and which one is the `RDD ID`. This PR is to improve the checkpoint checking.
### How was this patch tested?
N/A
Author: gatorsmile <gatorsmile@gmail.com>
Closes#18796 from gatorsmile/improveErrMsgForCheckpoint.
The main goal of this change is to avoid the situation described
in the bug, where an AM restart in the middle of a job may cause
no new executors to be allocated because of faulty logic in the
reset path.
The change does two things:
- fixes the executor alloc manager's reset() so that it does not
stop allocation after a reset() in the middle of a job
- re-orders the initialization of the YarnAllocator class so that
it fetches the current executor ID before triggering the reset()
above.
This ensures both that the new allocator gets new requests for executors,
and that it starts from the correct executor id.
Tested with unit tests and by manually causing AM restarts while
running jobs using spark-shell in YARN mode.
Closes#17882
Author: Marcelo Vanzin <vanzin@cloudera.com>
Author: Guoqiang Li <witgo@qq.com>
Closes#18663 from vanzin/SPARK-20079.
## What changes were proposed in this pull request?
Java's `FileInputStream` and `FileOutputStream` overrides finalize(), even this file input/output stream is closed correctly and promptly, it will still leave some memory footprints which will only get cleaned in Full GC. This will introduce two side effects:
1. Lots of memory footprints regarding to Finalizer will be kept in memory and this will increase the memory overhead. In our use case of external shuffle service, a busy shuffle service will have bunch of this object and potentially lead to OOM.
2. The Finalizer will only be called in Full GC, and this will increase the overhead of Full GC and lead to long GC pause.
https://bugs.openjdk.java.net/browse/JDK-8080225https://www.cloudbees.com/blog/fileinputstream-fileoutputstream-considered-harmful
So to fix this potential issue, here propose to use NIO's Files#newInput/OutputStream instead in some critical paths like shuffle.
Left unchanged FileInputStream in core which I think is not so critical:
```
./core/src/main/scala/org/apache/spark/api/python/PythonRDD.scala:467: val file = new DataInputStream(new FileInputStream(filename))
./core/src/main/scala/org/apache/spark/api/python/PythonRDD.scala:942: val in = new FileInputStream(new File(path))
./core/src/main/scala/org/apache/spark/deploy/master/FileSystemPersistenceEngine.scala:76: val fileIn = new FileInputStream(file)
./core/src/main/scala/org/apache/spark/deploy/RPackageUtils.scala:248: val fis = new FileInputStream(file)
./core/src/main/scala/org/apache/spark/deploy/SparkSubmit.scala:910: input = new FileInputStream(new File(t))
./core/src/main/scala/org/apache/spark/metrics/MetricsConfig.scala:20:import java.io.{FileInputStream, InputStream}
./core/src/main/scala/org/apache/spark/metrics/MetricsConfig.scala:132: case Some(f) => new FileInputStream(f)
./core/src/main/scala/org/apache/spark/scheduler/SchedulableBuilder.scala:20:import java.io.{FileInputStream, InputStream}
./core/src/main/scala/org/apache/spark/scheduler/SchedulableBuilder.scala:77: val fis = new FileInputStream(f)
./core/src/main/scala/org/apache/spark/shuffle/IndexShuffleBlockResolver.scala:27:import org.apache.spark.io.NioBufferedFileInputStream
./core/src/main/scala/org/apache/spark/shuffle/IndexShuffleBlockResolver.scala:94: new DataInputStream(new NioBufferedFileInputStream(index))
./core/src/main/scala/org/apache/spark/storage/DiskStore.scala:111: val channel = new FileInputStream(file).getChannel()
./core/src/main/scala/org/apache/spark/storage/DiskStore.scala:219: val channel = new FileInputStream(file).getChannel()
./core/src/main/scala/org/apache/spark/TestUtils.scala:20:import java.io.{ByteArrayInputStream, File, FileInputStream, FileOutputStream}
./core/src/main/scala/org/apache/spark/TestUtils.scala:106: val in = new FileInputStream(file)
./core/src/main/scala/org/apache/spark/util/logging/RollingFileAppender.scala:89: inputStream = new FileInputStream(activeFile)
./core/src/main/scala/org/apache/spark/util/Utils.scala:329: if (in.isInstanceOf[FileInputStream] && out.isInstanceOf[FileOutputStream]
./core/src/main/scala/org/apache/spark/util/Utils.scala:332: val inChannel = in.asInstanceOf[FileInputStream].getChannel()
./core/src/main/scala/org/apache/spark/util/Utils.scala:1533: gzInputStream = new GZIPInputStream(new FileInputStream(file))
./core/src/main/scala/org/apache/spark/util/Utils.scala:1560: new GZIPInputStream(new FileInputStream(file))
./core/src/main/scala/org/apache/spark/util/Utils.scala:1562: new FileInputStream(file)
./core/src/main/scala/org/apache/spark/util/Utils.scala:2090: val inReader = new InputStreamReader(new FileInputStream(file), StandardCharsets.UTF_8)
```
Left unchanged FileOutputStream in core:
```
./core/src/main/scala/org/apache/spark/api/python/PythonRDD.scala:957: val out = new FileOutputStream(file)
./core/src/main/scala/org/apache/spark/api/r/RBackend.scala:20:import java.io.{DataOutputStream, File, FileOutputStream, IOException}
./core/src/main/scala/org/apache/spark/api/r/RBackend.scala:131: val dos = new DataOutputStream(new FileOutputStream(f))
./core/src/main/scala/org/apache/spark/deploy/master/FileSystemPersistenceEngine.scala:62: val fileOut = new FileOutputStream(file)
./core/src/main/scala/org/apache/spark/deploy/RPackageUtils.scala:160: val outStream = new FileOutputStream(outPath)
./core/src/main/scala/org/apache/spark/deploy/RPackageUtils.scala:239: val zipOutputStream = new ZipOutputStream(new FileOutputStream(zipFile, false))
./core/src/main/scala/org/apache/spark/deploy/SparkSubmit.scala:949: val out = new FileOutputStream(tempFile)
./core/src/main/scala/org/apache/spark/deploy/worker/CommandUtils.scala:20:import java.io.{File, FileOutputStream, InputStream, IOException}
./core/src/main/scala/org/apache/spark/deploy/worker/CommandUtils.scala:106: val out = new FileOutputStream(file, true)
./core/src/main/scala/org/apache/spark/scheduler/EventLoggingListener.scala:109: * Therefore, for local files, use FileOutputStream instead. */
./core/src/main/scala/org/apache/spark/scheduler/EventLoggingListener.scala:112: new FileOutputStream(uri.getPath)
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:20:import java.io.{BufferedOutputStream, File, FileOutputStream, OutputStream}
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:71: private var fos: FileOutputStream = null
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:102: fos = new FileOutputStream(file, true)
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:213: var truncateStream: FileOutputStream = null
./core/src/main/scala/org/apache/spark/storage/DiskBlockObjectWriter.scala:215: truncateStream = new FileOutputStream(file, true)
./core/src/main/scala/org/apache/spark/storage/DiskStore.scala:153: val out = new FileOutputStream(file).getChannel()
./core/src/main/scala/org/apache/spark/TestUtils.scala:20:import java.io.{ByteArrayInputStream, File, FileInputStream, FileOutputStream}
./core/src/main/scala/org/apache/spark/TestUtils.scala:81: val jarStream = new JarOutputStream(new FileOutputStream(jarFile))
./core/src/main/scala/org/apache/spark/TestUtils.scala:96: val jarFileStream = new FileOutputStream(jarFile)
./core/src/main/scala/org/apache/spark/util/logging/FileAppender.scala:20:import java.io.{File, FileOutputStream, InputStream, IOException}
./core/src/main/scala/org/apache/spark/util/logging/FileAppender.scala:31: volatile private var outputStream: FileOutputStream = null
./core/src/main/scala/org/apache/spark/util/logging/FileAppender.scala:97: outputStream = new FileOutputStream(file, true)
./core/src/main/scala/org/apache/spark/util/logging/RollingFileAppender.scala:90: gzOutputStream = new GZIPOutputStream(new FileOutputStream(gzFile))
./core/src/main/scala/org/apache/spark/util/Utils.scala:329: if (in.isInstanceOf[FileInputStream] && out.isInstanceOf[FileOutputStream]
./core/src/main/scala/org/apache/spark/util/Utils.scala:333: val outChannel = out.asInstanceOf[FileOutputStream].getChannel()
./core/src/main/scala/org/apache/spark/util/Utils.scala:527: val out = new FileOutputStream(tempFile)
```
Here in `DiskBlockObjectWriter`, it uses `FileDescriptor` so it is not easy to change to NIO Files API.
For the `FileInputStream` and `FileOutputStream` in common/shuffle* I changed them all.
## How was this patch tested?
Existing tests and manual verification.
Author: jerryshao <sshao@hortonworks.com>
Closes#18684 from jerryshao/SPARK-21475.
## What changes were proposed in this pull request?
Remove surplus synchronized blocks.
## How was this patch tested?
Unit tests run OK.
Author: iurii.ant <sereneant@gmail.com>
Closes#18775 from SereneAnt/eliminate_unnecessary_synchronization_in_java-R_serialization.
## What changes were proposed in this pull request?
When BytesToBytesMap spills, its longArray should be released. Otherwise, it may not released until the task complete. This array may take a significant amount of memory, which cannot be used by later operator, such as UnsafeShuffleExternalSorter, resulting in more frequent spill in sorter. This patch release the array as destructive iterator will not use this array anymore.
## How was this patch tested?
Manual test in production
Author: Zhan Zhang <zhanzhang@fb.com>
Closes#17180 from zhzhan/memory.
When I type spark-shell --help, I find that the default value description for the master parameter is missing. The user does not know what the default value is when the master parameter is not included, so we need to add the master parameter default description to the help information.
[https://issues.apache.org/jira/browse/SPARK-21553](https://issues.apache.org/jira/browse/SPARK-21553)
Author: davidxdh <xu.donghui@zte.com.cn>
Author: Donghui Xu <xu.donghui@zte.com.cn>
Closes#18755 from davidxdh/dev_0728.
## What changes were proposed in this pull request?
Fixes current failures in dev/lint-java
## How was this patch tested?
Existing linter, tests.
Author: Sean Owen <sowen@cloudera.com>
Closes#18757 from srowen/LintJava.
## What changes were proposed in this pull request?
`UnsafeExternalSorter.recordComparator` can be either `KVComparator` or `RowComparator`, and both of them will keep the reference to the input rows they compared last time.
After sorting, we return the sorted iterator to upstream operators. However, the upstream operators may take a while to consume up the sorted iterator, and `UnsafeExternalSorter` is registered to `TaskContext` at [here](https://github.com/apache/spark/blob/v2.2.0/core/src/main/java/org/apache/spark/util/collection/unsafe/sort/UnsafeExternalSorter.java#L159-L161), which means we will keep the `UnsafeExternalSorter` instance and keep the last compared input rows in memory until the sorted iterator is consumed up.
Things get worse if we sort within partitions of a dataset and coalesce all partitions into one, as we will keep a lot of input rows in memory and the time to consume up all the sorted iterators is long.
This PR takes over https://github.com/apache/spark/pull/18543 , the idea is that, we do not keep the record comparator instance in `UnsafeExternalSorter`, but a generator of record comparator.
close#18543
## How was this patch tested?
N/A
Author: Wenchen Fan <wenchen@databricks.com>
Closes#18679 from cloud-fan/memory-leak.
## What changes were proposed in this pull request?
In our production cluster,oom happens when NettyBlockRpcServer receive OpenBlocks message.The reason we observed is below:
When BlockManagerManagedBuffer call ChunkedByteBuffer#toNetty, it will use Unpooled.wrappedBuffer(ByteBuffer... buffers) which use default maxNumComponents=16 in low-level CompositeByteBuf.When our component's number is bigger than 16, it will execute consolidateIfNeeded
int numComponents = this.components.size();
if(numComponents > this.maxNumComponents) {
int capacity = ((CompositeByteBuf.Component)this.components.get(numComponents - 1)).endOffset;
ByteBuf consolidated = this.allocBuffer(capacity);
for(int c = 0; c < numComponents; ++c) {
CompositeByteBuf.Component c1 = (CompositeByteBuf.Component)this.components.get(c);
ByteBuf b = c1.buf;
consolidated.writeBytes(b);
c1.freeIfNecessary();
}
CompositeByteBuf.Component var7 = new CompositeByteBuf.Component(consolidated);
var7.endOffset = var7.length;
this.components.clear();
this.components.add(var7);
}
in CompositeByteBuf which will consume some memory during buffer copy.
We can use another api Unpooled. wrappedBuffer(int maxNumComponents, ByteBuffer... buffers) to avoid this comsuming.
## How was this patch tested?
Test in production cluster.
Author: zhoukang <zhoukang@xiaomi.com>
Closes#18723 from caneGuy/zhoukang/fix-chunkbuffer.
inprogress history file in some cases.
Add failure handling for EOFException that can be thrown during
decompression of an inprogress spark history file, treat same as case
where can't parse the last line.
## What changes were proposed in this pull request?
Failure handling for case of EOFException thrown within the ReplayListenerBus.replay method to handle the case analogous to json parse fail case. This path can arise in compressed inprogress history files since an incomplete compression block could be read (not flushed by writer on a block boundary). See the stack trace of this occurrence in the jira ticket (https://issues.apache.org/jira/browse/SPARK-21447)
## How was this patch tested?
Added a unit test that specifically targets validating the failure handling path appropriately when maybeTruncated is true and false.
Author: Eric Vandenberg <ericvandenberg@fb.com>
Closes#18673 from ericvandenbergfb/fix_inprogress_compr_history_file.
Executors run a thread pool with daemon threads to run tasks. This means
that those threads remain active when the JVM is shutting down, meaning
those tasks are affected by code that runs in shutdown hooks.
So if a shutdown hook messes with something that the task is using (e.g.
an HDFS connection), the task will fail and will report that failure to
the driver. That will make the driver mark the task as failed regardless
of what caused the executor to shut down. So, for example, if YARN pre-empted
that executor, the driver would consider that task failed when it should
instead ignore the failure.
This change avoids reporting failures to the driver when shutdown hooks
are executing; this fixes the YARN preemption accounting, and doesn't really
change things much for other scenarios, other than reporting a more generic
error ("Executor lost") when the executor shuts down unexpectedly - which
is arguably more correct.
Tested with a hacky app running on spark-shell that tried to cause failures
only when shutdown hooks were running, verified that preemption didn't cause
the app to fail because of task failures exceeding the threshold.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#18594 from vanzin/SPARK-20904.
## What changes were proposed in this pull request?
DirectParquetOutputCommitter was removed from Spark as it was deemed unsafe to use. We however still have some code to generate warning. This patch removes those code as well.
This is kind of a follow-up of https://github.com/apache/spark/pull/16796
## How was this patch tested?
existing tests
Author: Wenchen Fan <wenchen@databricks.com>
Closes#18689 from cloud-fan/minor.
## What changes were proposed in this pull request?
During writing to the .inprogress file (stored on the HDFS) Hadoop doesn't update file length until close and therefor Spark's history server can't detect any changes. We have to send UPDATE_LENGTH manually.
Author: Oleg Danilov <oleg.danilov@wandisco.com>
Closes#16924 from dosoft/SPARK-19531.
## What changes were proposed in this pull request?
This is the reopen of https://github.com/apache/spark/pull/14198, with merge conflicts resolved.
ueshin Could you please take a look at my code?
Fix bugs about types that result an array of null when creating DataFrame using python.
Python's array.array have richer type than python itself, e.g. we can have `array('f',[1,2,3])` and `array('d',[1,2,3])`. Codes in spark-sql and pyspark didn't take this into consideration which might cause a problem that you get an array of null values when you have `array('f')` in your rows.
A simple code to reproduce this bug is:
```
from pyspark import SparkContext
from pyspark.sql import SQLContext,Row,DataFrame
from array import array
sc = SparkContext()
sqlContext = SQLContext(sc)
row1 = Row(floatarray=array('f',[1,2,3]), doublearray=array('d',[1,2,3]))
rows = sc.parallelize([ row1 ])
df = sqlContext.createDataFrame(rows)
df.show()
```
which have output
```
+---------------+------------------+
| doublearray| floatarray|
+---------------+------------------+
|[1.0, 2.0, 3.0]|[null, null, null]|
+---------------+------------------+
```
## How was this patch tested?
New test case added
Author: Xiang Gao <qasdfgtyuiop@gmail.com>
Author: Gao, Xiang <qasdfgtyuiop@gmail.com>
Author: Takuya UESHIN <ueshin@databricks.com>
Closes#18444 from zasdfgbnm/fix_array_infer.
## What changes were proposed in this pull request?
For configurations with external shuffle enabled, we have observed that if a very large no. of blocks are being fetched from a remote host, it puts the NM under extra pressure and can crash it. This change introduces a configuration `spark.reducer.maxBlocksInFlightPerAddress` , to limit the no. of map outputs being fetched from a given remote address. The changes applied here are applicable for both the scenarios - when external shuffle is enabled as well as disabled.
## How was this patch tested?
Ran the job with the default configuration which does not change the existing behavior and ran it with few configurations of lower values -10,20,50,100. The job ran fine and there is no change in the output. (I will update the metrics related to NM in some time.)
Author: Dhruve Ashar <dhruveashar@gmail.com>
Closes#18487 from dhruve/impr/SPARK-21243.
## What changes were proposed in this pull request?
The most of BoundedPriorityQueue usages in ML/MLLIB are:
Get the value of BoundedPriorityQueue, then sort it.
For example, in Word2Vec: pq.toSeq.sortBy(-_._2)
in ALS, pq.toArray.sorted()
The test results show using pq.poll is much faster than sort the value.
It is good to add the poll function for BoundedPriorityQueue.
## How was this patch tested?
The existing UT
Author: Peng <peng.meng@intel.com>
Author: Peng Meng <peng.meng@intel.com>
Closes#18620 from mpjlu/add-poll.
Instead of using the host's cpu count, use the number of cores allocated
for the Spark process when sizing the RPC dispatch thread pool. This avoids
creating large thread pools on large machines when the number of allocated
cores is small.
Tested by verifying number of threads with spark.executor.cores set
to 1 and 4; same thing for YARN AM.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#18639 from vanzin/SPARK-21408.
## What changes were proposed in this pull request?
In the current `YARNHadoopDelegationTokenManager`, `FileSystem` to which to get tokens are created out of KDC logged UGI, using these `FileSystem` to get new tokens will lead to exception. The main thing is that Spark code trying to get new tokens from the FS created with token auth-ed UGI, but Hadoop can only grant new tokens in kerberized UGI. To fix this issue, we should lazily create these FileSystem within KDC logged UGI.
## How was this patch tested?
Manual verification in secure cluster.
CC vanzin mgummelt please help to review, thanks!
Author: jerryshao <sshao@hortonworks.com>
Closes#18633 from jerryshao/SPARK-21411.
## What changes were proposed in this pull request?
Address scapegoat warnings for:
- BigDecimal double constructor
- Catching NPE
- Finalizer without super
- List.size is O(n)
- Prefer Seq.empty
- Prefer Set.empty
- reverse.map instead of reverseMap
- Type shadowing
- Unnecessary if condition.
- Use .log1p
- Var could be val
In some instances like Seq.empty, I avoided making the change even where valid in test code to keep the scope of the change smaller. Those issues are concerned with performance and it won't matter for tests.
## How was this patch tested?
Existing tests
Author: Sean Owen <sowen@cloudera.com>
Closes#18635 from srowen/Scapegoat1.
## What changes were proposed in this pull request?
In SPARK-21444, sitalkedia reported an issue where the `Broadcast.destroy()` call in `MapOutputTracker`'s `ShuffleStatus.invalidateSerializedMapOutputStatusCache()` was failing with an `IOException`, causing the DAGScheduler to crash and bring down the entire driver.
This is a bug introduced by #17955. In the old code, we removed a broadcast variable by calling `BroadcastManager.unbroadcast` with `blocking=false`, but the new code simply calls `Broadcast.destroy()` which is capable of failing with an IOException in case certain blocking RPCs time out.
The fix implemented here is to replace this with a call to `destroy(blocking = false)` and to wrap the entire operation in `Utils.tryLogNonFatalError`.
## How was this patch tested?
I haven't written regression tests for this because it's really hard to inject mocks to simulate RPC failures here. Instead, this class of issue is probably best uncovered with more generalized error injection / network unreliability / fuzz testing tools.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#18662 from JoshRosen/SPARK-21444.
## What changes were proposed in this pull request?
Fix a bug in RangePartitioner:
In RangePartitioner(partitions: Int, rdd: RDD[]), RangePartitioner.numPartitions is wrong if the number of elements in RDD (rdd.count()) is less than number of partitions (partitions in constructor).
## How was this patch tested?
test as described in [SPARK-SPARK-21410](https://issues.apache.org/jira/browse/SPARK-21410
)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Zhang A Peng <zhangap@cn.ibm.com>
Closes#18631 from apapi/fixRangePartitioner.numPartitions.
## What changes were proposed in this pull request?
The current code is very verbose on shutdown.
The changes I propose is to change the log level when the driver is shutting down and the RPC connections are closed (RpcEnvStoppedException).
## How was this patch tested?
Tested with word count(deploy-mode = cluster, master = yarn, num-executors = 4) with 300GB of data.
Author: John Lee <jlee2@yahoo-inc.com>
Closes#18547 from yoonlee95/SPARK-21321.
## What changes were proposed in this pull request?
This PR fixes a wrong comparison for `BinaryType`. This PR enables unsigned comparison and unsigned prefix generation for an array for `BinaryType`. Previous implementations uses signed operations.
## How was this patch tested?
Added a test suite in `OrderingSuite`.
Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Closes#18571 from kiszk/SPARK-21344.
## What changes were proposed in this pull request?
Fixes --packages flag for mesos in cluster mode. Probably I will handle standalone and Yarn in another commit, I need to investigate those cases as they are different.
## How was this patch tested?
Tested with a community 1.9 dc/os cluster. packages were successfully resolved in cluster mode within a container.
andrewor14 susanxhuynh ArtRand srowen pls review.
Author: Stavros Kontopoulos <st.kontopoulos@gmail.com>
Closes#18587 from skonto/fix_packages_mesos_cluster.
## What changes were proposed in this pull request?
- Remove Scala 2.10 build profiles and support
- Replace some 2.10 support in scripts with commented placeholders for 2.12 later
- Remove deprecated API calls from 2.10 support
- Remove usages of deprecated context bounds where possible
- Remove Scala 2.10 workarounds like ScalaReflectionLock
- Other minor Scala warning fixes
## How was this patch tested?
Existing tests
Author: Sean Owen <sowen@cloudera.com>
Closes#17150 from srowen/SPARK-19810.
## What changes were proposed in this pull request?
Adding the default UncaughtExceptionHandler to the Worker.
## How was this patch tested?
I verified it manually, when any of the worker thread gets uncaught exceptions then the default UncaughtExceptionHandler will handle those exceptions.
Author: Devaraj K <devaraj@apache.org>
Closes#18357 from devaraj-kavali/SPARK-21146.
## What changes were proposed in this pull request?
In current code, it is expensive to use `UnboundedFollowingWindowFunctionFrame`, because it is iterating from the start to lower bound every time calling `write` method. When traverse the iterator, it's possible to skip some spilled files thus to save some time.
## How was this patch tested?
Added unit test
Did a small test for benchmark:
Put 2000200 rows into `UnsafeExternalSorter`-- 2 spill files(each contains 1000000 rows) and inMemSorter contains 200 rows.
Move the iterator forward to index=2000001.
*With this change*:
`getIterator(2000001)`, it will cost almost 0ms~1ms;
*Without this change*:
`for(int i=0; i<2000001; i++)geIterator().loadNext()`, it will cost 300ms.
Author: jinxing <jinxing6042@126.com>
Closes#18541 from jinxing64/SPARK-21315.
## What changes were proposed in this pull request?
When `RetryingBlockFetcher` retries fetching blocks. There could be two `DownloadCallback`s download the same content to the same target file. It could cause `ShuffleBlockFetcherIterator` reading a partial result.
This pr proposes to create and delete the tmp files in `OneForOneBlockFetcher`
Author: jinxing <jinxing6042@126.com>
Author: Shixiong Zhu <zsxwing@gmail.com>
Closes#18565 from jinxing64/SPARK-21342.
## What changes were proposed in this pull request?
There's a race condition in the current TaskSetManager where a failed task is added for retry (addPendingTask), and can asynchronously be assigned to an executor *prior* to the blacklist state (updateBlacklistForFailedTask), the result is the task might re-execute on the same executor. This is particularly problematic if the executor is shutting down since the retry task immediately becomes a lost task (ExecutorLostFailure). Another side effect is that the actual failure reason gets obscured by the retry task which never actually executed. There are sample logs showing the issue in the https://issues.apache.org/jira/browse/SPARK-21219
The fix is to change the ordering of the addPendingTask and updatingBlackListForFailedTask calls in TaskSetManager.handleFailedTask
## How was this patch tested?
Implemented a unit test that verifies the task is black listed before it is added to the pending task. Ran the unit test without the fix and it fails. Ran the unit test with the fix and it passes.
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Eric Vandenberg <ericvandenberg@fb.com>
Closes#18427 from ericvandenbergfb/blacklistFix.
## What changes were proposed in this pull request?
In current code, reducer can break the old shuffle service when `spark.reducer.maxReqSizeShuffleToMem` is enabled. Let's refine document.
Author: jinxing <jinxing6042@126.com>
Closes#18566 from jinxing64/SPARK-21343.
This makes sures that listeners get updated task information; otherwise it's
possible to write incomplete task information into event logs, for example,
making the information in a replayed UI inconsistent with the original
application.
Added a new unit test to try to detect the problem, but it's not guaranteed
to fail since it's a race; but it fails pretty reliably for me without the
scheduler changes.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#18393 from vanzin/SPARK-20342.try2.
This change exposes the internal code path in SparkConf that allows
configs to be read with variable substitution applied, and uses that
new method in SSLOptions so that SSL configs can reference other
variables, and more importantly, environment variables, providing
a secure way to provide passwords to Spark when using SSL.
The approach is a little bit hacky, but is the smallest change possible.
Otherwise, the concept of "namespaced configs" would have to be added
to the config system, which would create a lot of noise for not much
gain at this point.
Tested with added unit tests, and on a real cluster with SSL enabled.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#18394 from vanzin/SPARK-20379.try2.
## What changes were proposed in this pull request?
Some dropped event will make the whole application behaves unexpectedly, e.g. some UI problem...we shall log the dropped event name to facilitate the debugging
## How was this patch tested?
Existing tests
Author: CodingCat <zhunansjtu@gmail.com>
Closes#16697 from CodingCat/SPARK-19358.
## What changes were proposed in this pull request?
Currently `ArrayConstructor` handles an array of typecode `'l'` as `int` when converting Python object in Python 2 into Java object, so if the value is larger than `Integer.MAX_VALUE` or smaller than `Integer.MIN_VALUE` then the overflow occurs.
```python
import array
data = [Row(longarray=array.array('l', [-9223372036854775808, 0, 9223372036854775807]))]
df = spark.createDataFrame(data)
df.show(truncate=False)
```
```
+----------+
|longarray |
+----------+
|[0, 0, -1]|
+----------+
```
This should be:
```
+----------------------------------------------+
|longarray |
+----------------------------------------------+
|[-9223372036854775808, 0, 9223372036854775807]|
+----------------------------------------------+
```
## How was this patch tested?
Added a test and existing tests.
Author: Takuya UESHIN <ueshin@databricks.com>
Closes#18553 from ueshin/issues/SPARK-21327.
## What changes were proposed in this pull request?
This PR Improvement in two:
1.With spark.shuffle.spill.diskWriteBufferSize configure diskWriteBufferSize of ShuffleExternalSorter.
when change the size of the diskWriteBufferSize to test `forceSorterToSpill`
The average performance of running 10 times is as follows:(their unit is MS).
```
diskWriteBufferSize: 1M 512K 256K 128K 64K 32K 16K 8K 4K
---------------------------------------------------------------------------------------
RecordSize = 2.5M 742 722 694 686 667 668 671 669 683
RecordSize = 1M 294 293 292 287 283 285 281 279 285
```
2.Remove outputBufferSizeInBytes and inputBufferSizeInBytes to initialize in mergeSpillsWithFileStream function.
## How was this patch tested?
The unit test.
Author: caoxuewen <cao.xuewen@zte.com.cn>
Closes#18174 from heary-cao/buffersize.
## What changes were proposed in this pull request?
Right now in the UI, after SPARK-20213, we can show the operations to write data out. However, there is no way to associate metrics with data writes. We should show relative metrics on the operations.
#### Supported commands
This change supports updating metrics for file-based data writing operations, including `InsertIntoHadoopFsRelationCommand`, `InsertIntoHiveTable`.
Supported metrics:
* number of written files
* number of dynamic partitions
* total bytes of written data
* total number of output rows
* average writing data out time (ms)
* (TODO) min/med/max number of output rows per file/partition
* (TODO) min/med/max bytes of written data per file/partition
#### Commands not supported
`InsertIntoDataSourceCommand`, `SaveIntoDataSourceCommand`:
The two commands uses DataSource APIs to write data out, i.e., the logic of writing data out is delegated to the DataSource implementations, such as `InsertableRelation.insert` and `CreatableRelationProvider.createRelation`. So we can't obtain metrics from delegated methods for now.
`CreateHiveTableAsSelectCommand`, `CreateDataSourceTableAsSelectCommand` :
The two commands invokes other commands to write data out. The invoked commands can even write to non file-based data source. We leave them as future TODO.
#### How to update metrics of writing files out
A `RunnableCommand` which wants to update metrics, needs to override its `metrics` and provide the metrics data structure to `ExecutedCommandExec`.
The metrics are prepared during the execution of `FileFormatWriter`. The callback function passed to `FileFormatWriter` will accept the metrics and update accordingly.
There is a metrics updating function in `RunnableCommand`. In runtime, the function will be bound to the spark context and `metrics` of `ExecutedCommandExec` and pass to `FileFormatWriter`.
## How was this patch tested?
Updated unit tests.
Author: Liang-Chi Hsieh <viirya@gmail.com>
Closes#18159 from viirya/SPARK-20703-2.
Current "--jars (spark.jars)", "--files (spark.files)", "--py-files (spark.submit.pyFiles)" and "--archives (spark.yarn.dist.archives)" only support non-glob path. This is OK for most of the cases, but when user requires to add more jars, files into Spark, it is too verbose to list one by one. So here propose to add glob path support for resources.
Also improving the code of downloading resources.
## How was this patch tested?
UT added, also verified manually in local cluster.
Author: jerryshao <sshao@hortonworks.com>
Closes#18235 from jerryshao/SPARK-21012.
## What changes were proposed in this pull request?
This PR uses `runUninterruptibly` to avoid that the clean up codes in StreamExecution is interrupted. It also removes an optimization in `runUninterruptibly` to make sure this method never throw `InterruptedException`.
## How was this patch tested?
Jenkins
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#18461 from zsxwing/SPARK-21248.
## What changes were proposed in this pull request?
This PR aims to bump Py4J in order to fix the following float/double bug.
Py4J 0.10.5 fixes this (https://github.com/bartdag/py4j/issues/272) and the latest Py4J is 0.10.6.
**BEFORE**
```
>>> df = spark.range(1)
>>> df.select(df['id'] + 17.133574204226083).show()
+--------------------+
|(id + 17.1335742042)|
+--------------------+
| 17.1335742042|
+--------------------+
```
**AFTER**
```
>>> df = spark.range(1)
>>> df.select(df['id'] + 17.133574204226083).show()
+-------------------------+
|(id + 17.133574204226083)|
+-------------------------+
| 17.133574204226083|
+-------------------------+
```
## How was this patch tested?
Manual.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#18546 from dongjoon-hyun/SPARK-21278.
## What changes were proposed in this pull request?
The old unit test not effect
## How was this patch tested?
unit test
Author: he.qiao <he.qiao17@zte.com.cn>
Closes#18511 from Geek-He/dev_0703.
## What changes were proposed in this pull request?
Currently, running the shell below:
```bash
$ ./bin/spark-submit tmp.R a b c
```
with R file, `tmp.R` as below:
```r
#!/usr/bin/env Rscript
library(SparkR)
sparkRSQL.init(sparkR.init(master = "local"))
collect(createDataFrame(list(list(1))))
print(commandArgs(trailingOnly = TRUE))
```
working fine as below:
```bash
_1
1 1
[1] "a" "b" "c"
```
However, it looks not printed in usage documentation as below:
```bash
$ ./bin/spark-submit
```
```
Usage: spark-submit [options] <app jar | python file> [app arguments]
...
```
For `./bin/sparkR`, it looks fine as below:
```bash
$ ./bin/sparkR tmp.R
```
```
Running R applications through 'sparkR' is not supported as of Spark 2.0.
Use ./bin/spark-submit <R file>
```
Running the script below:
```bash
$ ./bin/spark-submit
```
**Before**
```
Usage: spark-submit [options] <app jar | python file> [app arguments]
...
```
**After**
```
Usage: spark-submit [options] <app jar | python file | R file> [app arguments]
...
```
## How was this patch tested?
Manually tested.
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#18505 from HyukjinKwon/minor-doc-summit.
## What changes were proposed in this pull request?
`FileAppender` is used to write `stderr` and `stdout` files in `ExecutorRunner`, But before writing `ErrorStream` into the the `stderr` file, the header information has been written into ,if FileOutputStream is not created as append mode, the header information will be lost
## How was this patch tested?
unit test case
Author: liuxian <liu.xian3@zte.com.cn>
Closes#18507 from 10110346/wip-lx-0703.
## What changes were proposed in this pull request?
Parallelize FileInputFormat.listStatus in Hadoop API via LIST_STATUS_NUM_THREADS to speed up examination of file sizes for wholeTextFiles et al
## How was this patch tested?
Existing tests, which will exercise the key path here: using a local file system.
Author: Sean Owen <sowen@cloudera.com>
Closes#18441 from srowen/SPARK-21137.
## What changes were proposed in this pull request?
Not adding the exception to the suppressed if it is the same instance as originalThrowable.
## How was this patch tested?
Added new tests to verify this, these tests fail without source code changes and passes with the change.
Author: Devaraj K <devaraj@apache.org>
Closes#18384 from devaraj-kavali/SPARK-21170.
## What changes were proposed in this pull request?
Remove `numHashCollisions` in `BytesToBytesMap`. And change `getAverageProbesPerLookup()` to `getAverageProbesPerLookup` as suggested.
## How was this patch tested?
Existing tests.
Author: Liang-Chi Hsieh <viirya@gmail.com>
Closes#18480 from viirya/SPARK-21052-followup.
# What issue does this PR address ?
Jira:https://issues.apache.org/jira/browse/SPARK-21223
fix the Thread-safety issue in FsHistoryProvider
Currently, Spark HistoryServer use a HashMap named fileToAppInfo in class FsHistoryProvider to store the map of eventlog path and attemptInfo.
When use ThreadPool to Replay the log files in the list and merge the list of old applications with new ones, multi thread may update fileToAppInfo at the same time, which may cause Thread-safety issues, such as falling into an infinite loop because of calling resize func of the hashtable.
Author: 曾林西 <zenglinxi@meituan.com>
Closes#18430 from zenglinxi0615/master.
## What changes were proposed in this pull request?
This PR makes the following changes:
- Implement a new commit protocol `HadoopMapRedCommitProtocol` which support the old `mapred` package's committer;
- Refactor SparkHadoopWriter and SparkHadoopMapReduceWriter, now they are combined together, thus we can support write through both mapred and mapreduce API by the new SparkHadoopWriter, a lot of duplicated codes are removed.
After this change, it should be pretty easy for us to support the committer from both the new and the old hadoop API at high level.
## How was this patch tested?
No major behavior change, passed the existing test cases.
Author: Xingbo Jiang <xingbo.jiang@databricks.com>
Closes#18438 from jiangxb1987/SparkHadoopWriter.
## What changes were proposed in this pull request?
Please see also https://issues.apache.org/jira/browse/SPARK-21176
This change limits the number of selector threads that jetty creates to maximum 8 per proxy servlet (Jetty default is number of processors / 2).
The newHttpClient for Jettys ProxyServlet class is overwritten to avoid the Jetty defaults (which are designed for high-performance http servers).
Once https://github.com/eclipse/jetty.project/issues/1643 is available, the code could be cleaned up to avoid the method override.
I really need this on v2.1.1 - what is the best way for a backport automatic merge works fine)? Shall I create another PR?
## How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
The patch was tested manually on a Spark cluster with a head node that has 88 processors using JMX to verify that the number of selector threads is now limited to 8 per proxy.
gurvindersingh zsxwing can you please review the change?
Author: IngoSchuster <ingo.schuster@de.ibm.com>
Author: Ingo Schuster <ingo.schuster@de.ibm.com>
Closes#18437 from IngoSchuster/master.
## What changes were proposed in this pull request?
Disable spark.reducer.maxReqSizeShuffleToMem because it breaks the old shuffle service.
Credits to wangyum
Closes#18466
## How was this patch tested?
Jenkins
Author: Shixiong Zhu <shixiong@databricks.com>
Author: Yuming Wang <wgyumg@gmail.com>
Closes#18467 from zsxwing/SPARK-21253.
## What changes were proposed in this pull request?
Since the objects `readLocksByTask`, `writeLocksByTask` and `info`s are coupled and supposed to be modified by other threads concurrently, all the read and writes of them in the method `releaseAllLocksForTask` should be protected by a single synchronized block like other similar methods.
## How was this patch tested?
existing tests
Author: Feng Liu <fengliu@databricks.com>
Closes#18400 from liufengdb/synchronize.
JIRA Issue:https://issues.apache.org/jira/browse/SPARK-21225
In the function "resourceOffers", It declare a variable "tasks" for storage the tasks which have allocated a executor. It declared like this:
`val tasks = shuffledOffers.map(o => new ArrayBuffer[TaskDescription](o.cores))`
But, I think this code only conside a situation for that one task per core. If the user set "spark.task.cpus" as 2 or 3, It really don't need so much Mem. I think It can motify as follow:
val tasks = shuffledOffers.map(o => new ArrayBuffer[TaskDescription](o.cores / CPUS_PER_TASK))
to instead.
Motify like this the other earning is that it's more easy to understand the way how the tasks allocate offers.
Author: 杨治国10192065 <yang.zhiguo@zte.com.cn>
Closes#18435 from JackYangzg/motifyTaskCoreDisp.
## What changes were proposed in this pull request?
Hide duration of incompleted applications.
## How was this patch tested?
manual tests
Author: fjh100456 <fu.jinhua6@zte.com.cn>
Closes#18351 from fjh100456/master.
## What changes were proposed in this pull request?
Same with SPARK-20985.
Fix code style for constructing and stopping a `SparkContext`. Assure the context is stopped to avoid other tests complain that there's only one `SparkContext` can exist.
Author: jinxing <jinxing6042@126.com>
Closes#18454 from jinxing64/SPARK-21240.
## What changes were proposed in this pull request?
Report Spill size on disk for UnsafeExternalSorter
## How was this patch tested?
Tested by running a job on cluster and verify the spill size on disk.
Author: Sital Kedia <skedia@fb.com>
Closes#17471 from sitalkedia/fix_disk_spill_size.
## What changes were proposed in this pull request?
Add metric on number of running tasks to status bar on Jobs / Active Jobs.
## How was this patch tested?
Run a long running (1 minute) query in spark-shell and use localhost:4040 web UI to observe progress. See jira for screen snapshot.
Author: Eric Vandenberg <ericvandenberg@fb.com>
Closes#18369 from ericvandenbergfb/runningTasks.
## What changes were proposed in this pull request?
Currently we are running into an issue with Yarn work preserving enabled + external shuffle service.
In the work preserving enabled scenario, the failure of NM will not lead to the exit of executors, so executors can still accept and run the tasks. The problem here is when NM is failed, external shuffle service is actually inaccessible, so reduce tasks will always complain about the “Fetch failure”, and the failure of reduce stage will make the parent stage (map stage) rerun. The tricky thing here is Spark scheduler is not aware of the unavailability of external shuffle service, and will reschedule the map tasks on the executor where NM is failed, and again reduce stage will be failed with “Fetch failure”, and after 4 retries, the job is failed. This could also apply to other cluster manager with external shuffle service.
So here the main problem is that we should avoid assigning tasks to those bad executors (where shuffle service is unavailable). Current Spark's blacklist mechanism could blacklist executors/nodes by failure tasks, but it doesn't handle this specific fetch failure scenario. So here propose to improve the current application blacklist mechanism to handle fetch failure issue (especially with external shuffle service unavailable issue), to blacklist the executors/nodes where shuffle fetch is unavailable.
## How was this patch tested?
Unit test and small cluster verification.
Author: jerryshao <sshao@hortonworks.com>
Closes#17113 from jerryshao/SPARK-13669.
Monitoring for standalone cluster mode is not implemented (see SPARK-11033), but
the same scheduler implementation is used, and if it tries to connect to the
launcher it will fail. So fix the scheduler so it only tries that in client mode;
cluster mode applications will be correctly launched and will work, but monitoring
through the launcher handle will not be available.
Tested by running a cluster mode app with "SparkLauncher.startApplication".
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#18397 from vanzin/SPARK-21159.
## What changes were proposed in this pull request?
If we start an app with the param --total-executor-cores=4 and spark.executor.cores=3, the cores left is always 1, so it will try to allocate executors in the function org.apache.spark.deploy.master.startExecutorsOnWorkers in every schedule.
Another question is, is it will be better to allocate another executor with 1 core for the cores left.
## How was this patch tested?
unit test
Author: 10129659 <chen.yanshan@zte.com.cn>
Closes#18322 from eatoncys/leftcores.
## What changes were proposed in this pull request?
Turn tracking of TaskMetrics._updatedBlockStatuses off by default. As far as I can see its not used by anything and it uses a lot of memory when caching and processing a lot of blocks. In my case it was taking 5GB of a 10GB heap and I even went up to 50GB heap and the job still ran out of memory. With this change in place the same job easily runs in less then 10GB of heap.
We leave the api there as well as a config to turn it back on just in case anyone is using it. TaskMetrics is exposed via SparkListenerTaskEnd so if users are relying on it they can turn it back on.
## How was this patch tested?
Ran unit tests that were modified and manually tested on a couple of jobs (with and without caching). Clicked through the UI and didn't see anything missing.
Ran my very large hive query job with 200,000 small tasks, 1000 executors, cached 6+TB of data this runs fine now whereas without this change it would go into full gcs and eventually die.
Author: Thomas Graves <tgraves@thirteenroutine.corp.gq1.yahoo.com>
Author: Tom Graves <tgraves@yahoo-inc.com>
Closes#18162 from tgravescs/SPARK-20923.
In current code(https://github.com/apache/spark/pull/16989), big blocks are shuffled to disk.
This pr proposes to collect metrics for remote bytes fetched to disk.
Author: jinxing <jinxing6042@126.com>
Closes#18249 from jinxing64/SPARK-19937.
## What changes were proposed in this pull request?
In standalone mode, master should explicitly inform each active driver of any worker deaths, so the invalid external shuffle service outputs on the lost host would be removed from the shuffle mapStatus, thus we can avoid future `FetchFailure`s.
## How was this patch tested?
Manually tested by the following steps:
1. Start a standalone Spark cluster with one driver node and two worker nodes;
2. Run a Job with ShuffleMapStage, ensure the outputs distribute on each worker;
3. Run another Job to make all executors exit, but the workers are all alive;
4. Kill one of the workers;
5. Run rdd.collect(), before this change, we should see `FetchFailure`s and failed Stages, while after the change, the job should complete without failure.
Before the change:
After the change:
Author: Xingbo Jiang <xingbo.jiang@databricks.com>
Closes#18362 from jiangxb1987/removeWorker.
## What changes were proposed in this pull request?
Extend setJobDescription to PySpark and JavaSpark APIs
SPARK-21125
## How was this patch tested?
Testing was done by running a local Spark shell on the built UI. I originally had added a unit test but the PySpark context cannot easily access the Scala Spark Context's private variable with the Job Description key so I omitted the test, due to the simplicity of this addition.
Also ran the existing tests.
# Misc
This contribution is my original work and that I license the work to the project under the project's open source license.
Author: sjarvie <sjarvie@uber.com>
Closes#18332 from sjarvie/add_python_set_job_description.
## What changes were proposed in this pull request?
Currently the shuffle service registration timeout and retry has been hardcoded. This works well for small workloads but under heavy workload when the shuffle service is busy transferring large amount of data we see significant delay in responding to the registration request, as a result we often see the executors fail to register with the shuffle service, eventually failing the job. We need to make these two parameters configurable.
## How was this patch tested?
* Updated `BlockManagerSuite` to test registration timeout and max attempts configuration actually works.
cc sitalkedia
Author: Li Yichao <lyc@zhihu.com>
Closes#18092 from liyichao/SPARK-20640.
## What changes were proposed in this pull request?
In standalone mode, if we enable external shuffle service by setting `spark.shuffle.service.enabled` to true, and then we try to start multiple workers on one host(by setting `SPARK_WORKER_INSTANCES=3` in spark-env.sh, and then run `sbin/start-slaves.sh`), we can only launch one worker on each host successfully and the rest of the workers fail to launch.
The reason is the port of external shuffle service if configed by `spark.shuffle.service.port`, so currently we could start no more than one external shuffle service on each host. In our case, each worker tries to start a external shuffle service, and only one of them succeeded doing this.
We should give explicit reason of failure instead of fail silently.
## How was this patch tested?
Manually test by the following steps:
1. SET `SPARK_WORKER_INSTANCES=1` in `conf/spark-env.sh`;
2. SET `spark.shuffle.service.enabled` to `true` in `conf/spark-defaults.conf`;
3. Run `sbin/start-all.sh`.
Before the change, you will see no error in the command line, as the following:
```
starting org.apache.spark.deploy.master.Master, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.master.Master-1-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-1-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-2-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-3-xxx.local.out
```
And you can see in the webUI that only one worker is running.
After the change, you get explicit error messages in the command line:
```
starting org.apache.spark.deploy.master.Master, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.master.Master-1-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-1-xxx.local.out
localhost: failed to launch: nice -n 0 /Users/xxx/workspace/spark/bin/spark-class org.apache.spark.deploy.worker.Worker --webui-port 8081 spark://xxx.local:7077
localhost: 17/06/13 23:24:53 INFO SecurityManager: Changing view acls to: xxx
localhost: 17/06/13 23:24:53 INFO SecurityManager: Changing modify acls to: xxx
localhost: 17/06/13 23:24:53 INFO SecurityManager: Changing view acls groups to:
localhost: 17/06/13 23:24:53 INFO SecurityManager: Changing modify acls groups to:
localhost: 17/06/13 23:24:53 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(xxx); groups with view permissions: Set(); users with modify permissions: Set(xxx); groups with modify permissions: Set()
localhost: 17/06/13 23:24:54 INFO Utils: Successfully started service 'sparkWorker' on port 63354.
localhost: Exception in thread "main" java.lang.IllegalArgumentException: requirement failed: Start multiple worker on one host failed because we may launch no more than one external shuffle service on each host, please set spark.shuffle.service.enabled to false or set SPARK_WORKER_INSTANCES to 1 to resolve the conflict.
localhost: at scala.Predef$.require(Predef.scala:224)
localhost: at org.apache.spark.deploy.worker.Worker$.main(Worker.scala:752)
localhost: at org.apache.spark.deploy.worker.Worker.main(Worker.scala)
localhost: full log in /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-1-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-2-xxx.local.out
localhost: failed to launch: nice -n 0 /Users/xxx/workspace/spark/bin/spark-class org.apache.spark.deploy.worker.Worker --webui-port 8082 spark://xxx.local:7077
localhost: 17/06/13 23:24:56 INFO SecurityManager: Changing view acls to: xxx
localhost: 17/06/13 23:24:56 INFO SecurityManager: Changing modify acls to: xxx
localhost: 17/06/13 23:24:56 INFO SecurityManager: Changing view acls groups to:
localhost: 17/06/13 23:24:56 INFO SecurityManager: Changing modify acls groups to:
localhost: 17/06/13 23:24:56 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(xxx); groups with view permissions: Set(); users with modify permissions: Set(xxx); groups with modify permissions: Set()
localhost: 17/06/13 23:24:56 INFO Utils: Successfully started service 'sparkWorker' on port 63359.
localhost: Exception in thread "main" java.lang.IllegalArgumentException: requirement failed: Start multiple worker on one host failed because we may launch no more than one external shuffle service on each host, please set spark.shuffle.service.enabled to false or set SPARK_WORKER_INSTANCES to 1 to resolve the conflict.
localhost: at scala.Predef$.require(Predef.scala:224)
localhost: at org.apache.spark.deploy.worker.Worker$.main(Worker.scala:752)
localhost: at org.apache.spark.deploy.worker.Worker.main(Worker.scala)
localhost: full log in /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-2-xxx.local.out
localhost: starting org.apache.spark.deploy.worker.Worker, logging to /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-3-xxx.local.out
localhost: failed to launch: nice -n 0 /Users/xxx/workspace/spark/bin/spark-class org.apache.spark.deploy.worker.Worker --webui-port 8083 spark://xxx.local:7077
localhost: 17/06/13 23:24:59 INFO SecurityManager: Changing view acls to: xxx
localhost: 17/06/13 23:24:59 INFO SecurityManager: Changing modify acls to: xxx
localhost: 17/06/13 23:24:59 INFO SecurityManager: Changing view acls groups to:
localhost: 17/06/13 23:24:59 INFO SecurityManager: Changing modify acls groups to:
localhost: 17/06/13 23:24:59 INFO SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(xxx); groups with view permissions: Set(); users with modify permissions: Set(xxx); groups with modify permissions: Set()
localhost: 17/06/13 23:24:59 INFO Utils: Successfully started service 'sparkWorker' on port 63360.
localhost: Exception in thread "main" java.lang.IllegalArgumentException: requirement failed: Start multiple worker on one host failed because we may launch no more than one external shuffle service on each host, please set spark.shuffle.service.enabled to false or set SPARK_WORKER_INSTANCES to 1 to resolve the conflict.
localhost: at scala.Predef$.require(Predef.scala:224)
localhost: at org.apache.spark.deploy.worker.Worker$.main(Worker.scala:752)
localhost: at org.apache.spark.deploy.worker.Worker.main(Worker.scala)
localhost: full log in /Users/xxx/workspace/spark/logs/spark-xxx-org.apache.spark.deploy.worker.Worker-3-xxx.local.out
```
Author: Xingbo Jiang <xingbo.jiang@databricks.com>
Closes#18290 from jiangxb1987/start-slave.
## What changes were proposed in this pull request?
Fix HighlyCompressedMapStatus#writeExternal NPE:
```
17/06/18 15:00:27 ERROR Utils: Exception encountered
java.lang.NullPointerException
at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply$mcV$sp(MapStatus.scala:171)
at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1303)
at org.apache.spark.scheduler.HighlyCompressedMapStatus.writeExternal(MapStatus.scala:167)
at java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java:1459)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1430)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.writeArray(ObjectOutputStream.java:1378)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1174)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply$mcV$sp(MapOutputTracker.scala:617)
at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1337)
at org.apache.spark.MapOutputTracker$.serializeMapStatuses(MapOutputTracker.scala:619)
at org.apache.spark.MapOutputTrackerMaster.getSerializedMapOutputStatuses(MapOutputTracker.scala:562)
at org.apache.spark.MapOutputTrackerMaster$MessageLoop.run(MapOutputTracker.scala:351)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
17/06/18 15:00:27 ERROR MapOutputTrackerMaster: java.lang.NullPointerException
java.io.IOException: java.lang.NullPointerException
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1310)
at org.apache.spark.scheduler.HighlyCompressedMapStatus.writeExternal(MapStatus.scala:167)
at java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java:1459)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1430)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.writeArray(ObjectOutputStream.java:1378)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1174)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply$mcV$sp(MapOutputTracker.scala:617)
at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1337)
at org.apache.spark.MapOutputTracker$.serializeMapStatuses(MapOutputTracker.scala:619)
at org.apache.spark.MapOutputTrackerMaster.getSerializedMapOutputStatuses(MapOutputTracker.scala:562)
at org.apache.spark.MapOutputTrackerMaster$MessageLoop.run(MapOutputTracker.scala:351)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.NullPointerException
at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply$mcV$sp(MapStatus.scala:171)
at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1303)
... 17 more
17/06/18 15:00:27 INFO MapOutputTrackerMasterEndpoint: Asked to send map output locations for shuffle 0 to 10.17.47.20:50188
17/06/18 15:00:27 ERROR Utils: Exception encountered
java.lang.NullPointerException
at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply$mcV$sp(MapStatus.scala:171)
at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
at org.apache.spark.scheduler.HighlyCompressedMapStatus$$anonfun$writeExternal$2.apply(MapStatus.scala:167)
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1303)
at org.apache.spark.scheduler.HighlyCompressedMapStatus.writeExternal(MapStatus.scala:167)
at java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java:1459)
at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1430)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.writeArray(ObjectOutputStream.java:1378)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1174)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply$mcV$sp(MapOutputTracker.scala:617)
at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
at org.apache.spark.MapOutputTracker$$anonfun$serializeMapStatuses$1.apply(MapOutputTracker.scala:616)
at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1337)
at org.apache.spark.MapOutputTracker$.serializeMapStatuses(MapOutputTracker.scala:619)
at org.apache.spark.MapOutputTrackerMaster.getSerializedMapOutputStatuses(MapOutputTracker.scala:562)
at org.apache.spark.MapOutputTrackerMaster$MessageLoop.run(MapOutputTracker.scala:351)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
```
## How was this patch tested?
manual tests
Author: Yuming Wang <wgyumg@gmail.com>
Closes#18343 from wangyum/SPARK-21133.
The jobs page currently shows the application user, but it assumes
the OS user is the same as the user running the application, which
may not be true in all scenarios (e.g., kerberos). While it might be
useful to show both in the UI, this change just chooses the application
user over the OS user, since the latter can be found in the environment
page if needed.
Tested in live application and in history server.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#18331 from vanzin/SPARK-21124.
## What changes were proposed in this pull request?
This PR cleans up a few Java linter errors for Apache Spark 2.2 release.
## How was this patch tested?
```bash
$ dev/lint-java
Using `mvn` from path: /usr/local/bin/mvn
Checkstyle checks passed.
```
We can check the result at Travis CI, [here](https://travis-ci.org/dongjoon-hyun/spark/builds/244297894).
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#18345 from dongjoon-hyun/fix_lint_java_2.
## What changes were proposed in this pull request?
1.In `acquireStorageMemory`, when the Memory Mode is OFF_HEAP ,the `maxOffHeapMemory` should be modified to `maxOffHeapStorageMemory`. after this PR,it will same as ON_HEAP Memory Mode.
Because when acquire memory is between `maxOffHeapStorageMemory` and `maxOffHeapMemory`,it will fail surely, so if acquire memory is greater than `maxOffHeapStorageMemory`(not greater than `maxOffHeapMemory`),we should fail fast.
2. Borrow memory from execution, `numBytes` modified to `numBytes - storagePool.memoryFree` will be more reasonable.
Because we just acquire `(numBytes - storagePool.memoryFree)`, unnecessary borrowed `numBytes` from execution
## How was this patch tested?
added unit test case
Author: liuxian <liu.xian3@zte.com.cn>
Closes#18296 from 10110346/wip-lx-0614.
## What changes were proposed in this pull request?
“spark.eventLog.dir” supports with space characters.
1. Update EventLoggingListenerSuite like `testDir = Utils.createTempDir(namePrefix = s"history log")`
2. Fix EventLoggingListenerSuite tests
## How was this patch tested?
update unit tests
Author: zuotingbing <zuo.tingbing9@zte.com.cn>
Closes#18285 from zuotingbing/spark-resolveURI.
## What changes were proposed in this pull request?
Move Hadoop delegation token code from `spark-yarn` to `spark-core`, so that other schedulers (such as Mesos), may use it. In order to avoid exposing Hadoop interfaces in spark-core, the new Hadoop delegation token classes are kept private. In order to provider backward compatiblity, and to allow YARN users to continue to load their own delegation token providers via Java service loading, the old YARN interfaces, as well as the client code that uses them, have been retained.
Summary:
- Move registered `yarn.security.ServiceCredentialProvider` classes from `spark-yarn` to `spark-core`. Moved them into a new, private hierarchy under `HadoopDelegationTokenProvider`. Client code in `HadoopDelegationTokenManager` now loads credentials from a whitelist of three providers (`HadoopFSDelegationTokenProvider`, `HiveDelegationTokenProvider`, `HBaseDelegationTokenProvider`), instead of service loading, which means that users are not able to implement their own delegation token providers, as they are in the `spark-yarn` module.
- The `yarn.security.ServiceCredentialProvider` interface has been kept for backwards compatibility, and to continue to allow YARN users to implement their own delegation token provider implementations. Client code in YARN now fetches tokens via the new `YARNHadoopDelegationTokenManager` class, which fetches tokens from the core providers through `HadoopDelegationTokenManager`, as well as service loads them from `yarn.security.ServiceCredentialProvider`.
Old Hierarchy:
```
yarn.security.ServiceCredentialProvider (service loaded)
HadoopFSCredentialProvider
HiveCredentialProvider
HBaseCredentialProvider
yarn.security.ConfigurableCredentialManager
```
New Hierarchy:
```
HadoopDelegationTokenManager
HadoopDelegationTokenProvider (not service loaded)
HadoopFSDelegationTokenProvider
HiveDelegationTokenProvider
HBaseDelegationTokenProvider
yarn.security.ServiceCredentialProvider (service loaded)
yarn.security.YARNHadoopDelegationTokenManager
```
## How was this patch tested?
unit tests
Author: Michael Gummelt <mgummelt@mesosphere.io>
Author: Dr. Stefan Schimanski <sttts@mesosphere.io>
Closes#17723 from mgummelt/SPARK-20434-refactor-kerberos.
## What changes were proposed in this pull request?
Currently we don't wait to confirm the removal of the block from the slave's BlockManager, if the removal takes too much time, we will fail the assertion in this test case.
The failure can be easily reproduced if we sleep for a while before we remove the block in BlockManagerSlaveEndpoint.receiveAndReply().
## How was this patch tested?
N/A
Author: Xingbo Jiang <xingbo.jiang@databricks.com>
Closes#18314 from jiangxb1987/LocalCheckpointSuite.
## What changes were proposed in this pull request?
Use Poisson analysis for approx count in all cases.
## How was this patch tested?
Existing tests.
Author: Sean Owen <sowen@cloudera.com>
Closes#18276 from srowen/SPARK-21057.
## What changes were proposed in this pull request?
Currently, when we detect fetch failure, we only remove the shuffle files produced by the executor, while the host itself might be down and all the shuffle files are not accessible. In case we are running multiple executors on a host, any host going down currently results in multiple fetch failures and multiple retries of the stage, which is very inefficient. If we remove all the shuffle files on that host, on first fetch failure, we can rerun all the tasks on that host in a single stage retry.
## How was this patch tested?
Unit testing and also ran a job on the cluster and made sure multiple retries are gone.
Author: Sital Kedia <skedia@fb.com>
Author: Imran Rashid <irashid@cloudera.com>
Closes#18150 from sitalkedia/cleanup_shuffle.
Currently in Standalone HA mode, the resource usage of driver is not correctly counted in Master when recovering from failure, this will lead to some unexpected behaviors like negative value in UI.
So here fix this to also count the driver's resource usage.
Also changing the recovered app's state to `RUNNING` when fully recovered. Previously it will always be WAITING even fully recovered.
andrewor14 please help to review, thanks a lot.
Author: jerryshao <sshao@hortonworks.com>
Closes#10506 from jerryshao/SPARK-12552.
## What changes were proposed in this pull request?
When converting `string` to `number`(int, long or double), if the string has a space before or after,will lead to unnecessary mistakes.
## How was this patch tested?
unit test
Author: liuxian <liu.xian3@zte.com.cn>
Closes#18238 from 10110346/lx-wip-0608.
## What changes were proposed in this pull request?
The default value for `spark.port.maxRetries` is 100,
but we use 10 in the suite file.
So we change it to 100 to avoid test failure.
## How was this patch tested?
No test
Author: DjvuLee <lihu@bytedance.com>
Closes#18280 from djvulee/NettyTestBug.
## What changes were proposed in this pull request?
Create rpcEnv and run later needs shutdown. as #18226
## How was this patch tested?
unit test
Author: liuxian <liu.xian3@zte.com.cn>
Closes#18259 from 10110346/wip-lx-0610.
## What changes were proposed in this pull request?
Fix test file path. This is broken in #18264 and undetected since R-only changes don't build core and subsequent post-commit with the change built fine (again because it wasn't building core)
actually appveyor builds everything but it's not running scala suites ...
## How was this patch tested?
jenkins
srowen gatorsmile
Author: Felix Cheung <felixcheung_m@hotmail.com>
Closes#18283 from felixcheung/rsubmitsuite.
## What changes were proposed in this pull request?
This PR refactors `ShuffleMapStage` and `MapOutputTracker` in order to simplify the management of `MapStatuses`, reduce driver memory consumption, and remove a potential source of scheduler correctness bugs.
### Background
In Spark there are currently two places where MapStatuses are tracked:
- The `MapOutputTracker` maintains an `Array[MapStatus]` storing a single location for each map output. This mapping is used by the `DAGScheduler` for determining reduce-task locality preferences (when locality-aware reduce task scheduling is enabled) and is also used to serve map output locations to executors / tasks.
- Each `ShuffleMapStage` also contains a mapping of `Array[List[MapStatus]]` which holds the complete set of locations where each map output could be available. This mapping is used to determine which map tasks need to be run when constructing `TaskSets` for the stage.
This duplication adds complexity and creates the potential for certain types of correctness bugs. Bad things can happen if these two copies of the map output locations get out of sync. For instance, if the `MapOutputTracker` is missing locations for a map output but `ShuffleMapStage` believes that locations are available then tasks will fail with `MetadataFetchFailedException` but `ShuffleMapStage` will not be updated to reflect the missing map outputs, leading to situations where the stage will be reattempted (because downstream stages experienced fetch failures) but no task sets will be launched (because `ShuffleMapStage` thinks all maps are available).
I observed this behavior in a real-world deployment. I'm still not quite sure how the state got out of sync in the first place, but we can completely avoid this class of bug if we eliminate the duplicate state.
### Why we only need to track a single location for each map output
I think that storing an `Array[List[MapStatus]]` in `ShuffleMapStage` is unnecessary.
First, note that this adds memory/object bloat to the driver we need one extra `List` per task. If you have millions of tasks across all stages then this can add up to be a significant amount of resources.
Secondly, I believe that it's extremely uncommon that these lists will ever contain more than one entry. It's not impossible, but is very unlikely given the conditions which must occur for that to happen:
- In normal operation (no task failures) we'll only run each task once and thus will have at most one output.
- If speculation is enabled then it's possible that we'll have multiple attempts of a task. The TaskSetManager will [kill duplicate attempts of a task](04901dd03a/core/src/main/scala/org/apache/spark/scheduler/TaskSetManager.scala (L717)) after a task finishes successfully, reducing the likelihood that both the original and speculated task will successfully register map outputs.
- There is a [comment in `TaskSetManager`](04901dd03a/core/src/main/scala/org/apache/spark/scheduler/TaskSetManager.scala (L113)) which suggests that running tasks are not killed if a task set becomes a zombie. However:
- If the task set becomes a zombie due to the job being cancelled then it doesn't matter whether we record map outputs.
- If the task set became a zombie because of a stage failure (e.g. the map stage itself had a fetch failure from an upstream match stage) then I believe that the "failedEpoch" will be updated which may cause map outputs from still-running tasks to [be ignored](04901dd03a/core/src/main/scala/org/apache/spark/scheduler/DAGScheduler.scala (L1213)). (I'm not 100% sure on this point, though).
- Even if you _do_ manage to record multiple map outputs for a stage, only a single map output is reported to / tracked by the MapOutputTracker. The only situation where the additional output locations could actually be read or used would be if a task experienced a `FetchFailure` exception. The most likely cause of a `FetchFailure` exception is an executor lost, which will have most likely caused the loss of several map tasks' output, so saving on potential re-execution of a single map task isn't a huge win if we're going to have to recompute several other lost map outputs from other tasks which ran on that lost executor. Also note that the re-population of MapOutputTracker state from state in the ShuffleMapTask only happens after the reduce stage has failed; the additional location doesn't help to prevent FetchFailures but, instead, can only reduce the amount of work when recomputing missing parent stages.
Given this, this patch chooses to do away with tracking multiple locations for map outputs and instead stores only a single location. This change removes the main distinction between the `ShuffleMapTask` and `MapOutputTracker`'s copies of this state, paving the way for storing it only in the `MapOutputTracker`.
### Overview of other changes
- Significantly simplified the cache / lock management inside of the `MapOutputTrackerMaster`:
- The old code had several parallel `HashMap`s which had to be guarded by maps of `Object`s which were used as locks. This code was somewhat complicated to follow.
- The new code uses a new `ShuffleStatus` class to group together all of the state associated with a particular shuffle, including cached serialized map statuses, significantly simplifying the logic.
- Moved more code out of the shared `MapOutputTracker` abstract base class and into the `MapOutputTrackerMaster` and `MapOutputTrackerWorker` subclasses. This makes it easier to reason about which functionality needs to be supported only on the driver or executor.
- Removed a bunch of code from the `DAGScheduler` which was used to synchronize information from the `MapOutputTracker` to `ShuffleMapStage`.
- Added comments to clarify the role of `MapOutputTrackerMaster`'s `epoch` in invalidating executor-side shuffle map output caches.
I will comment on these changes via inline GitHub review comments.
/cc hvanhovell and rxin (whom I discussed this with offline), tgravescs (who recently worked on caching of serialized MapOutputStatuses), and kayousterhout and markhamstra (for scheduler changes).
## How was this patch tested?
Existing tests. I purposely avoided making interface / API which would require significant updates or modifications to test code.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#17955 from JoshRosen/map-output-tracker-rewrite.
## What changes were proposed in this pull request?
'--driver-cores' standalone or Mesos or YARN in Cluster deploy mode only.So The description of spark-submit about it is not very accurate.
## How was this patch tested?
manual tests
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>
Closes#18241 from guoxiaolongzte/SPARK-20997.
## What changes were proposed in this pull request?
Previously, `RDD.treeAggregate` used `reduceByKey` and `reduce` in its implementation, neither of which technically allows the `seq`/`combOps` to modify and return their first arguments.
This PR uses `foldByKey` and `fold` instead and notes that `aggregate` and `treeAggregate` are semantically identical in the Scala doc.
Note that this had some test failures by unknown reasons. This was actually fixed in e3554605b3.
The root cause was, the `zeroValue` now becomes `AFTAggregator` and it compares `totalCnt` (where the value is actually 0). It starts merging one by one and it keeps returning `this` where `totalCnt` is 0. So, this looks not the bug in the current change.
This is now fixed in the commit. So, this should pass the tests.
## How was this patch tested?
Test case added in `RDDSuite`.
Closes#12217
Author: Joseph K. Bradley <joseph@databricks.com>
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#18198 from HyukjinKwon/SPARK-14408.
## What changes were proposed in this pull request?
This patch adds Coda Hale metrics for instrumenting the `LiveListenerBus` in order to track the number of events received, dropped, and processed. In addition, it adds per-SparkListener-subclass timers to track message processing time. This is useful for identifying when slow third-party SparkListeners cause performance bottlenecks.
See the new `LiveListenerBusMetrics` for a complete description of the new metrics.
## How was this patch tested?
New tests in SparkListenerSuite, including a test to ensure proper counting of dropped listener events.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#18083 from JoshRosen/listener-bus-metrics.
Signed-off-by: 10087686 <wang.jiaochunzte.com.cn>
## What changes were proposed in this pull request?
When run test("port conflict") case, we need run anotherEnv.shutdown() and anotherEnv.awaitTermination() for free resource.
(Please fill in changes proposed in this fix)
## How was this patch tested?
run RpcEnvSuit.scala Utest
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: 10087686 <wang.jiaochun@zte.com.cn>
Closes#18226 from wangjiaochun/master.
## What changes were proposed in this pull request?
SparkContext should always be stopped after using, thus other tests won't complain that there's only one `SparkContext` can exist.
Author: jinxing <jinxing6042@126.com>
Closes#18204 from jinxing64/SPARK-20985.
## What changes were proposed in this pull request?
In our use case of launching Spark applications via REST APIs (Livy), there's no way for user to specify command line arguments, all Spark configurations are set through configurations map. For "--repositories" because there's no equivalent Spark configuration, so we cannot specify the custom repository through configuration.
So here propose to add "--repositories" equivalent configuration in Spark.
## How was this patch tested?
New UT added.
Author: jerryshao <sshao@hortonworks.com>
Closes#18201 from jerryshao/SPARK-20981.
## What changes were proposed in this pull request?
This pull request fix the TaskScheulerImpl bug in some condition.
Detail see:
https://issues.apache.org/jira/browse/SPARK-20945
(Please fill in changes proposed in this fix)
## How was this patch tested?
manual tests
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: liupengcheng <liupengcheng@xiaomi.com>
Author: PengchengLiu <pengchengliu_bupt@163.com>
Closes#18171 from liupc/Fix-tid-key-not-found-in-TaskSchedulerImpl.
## What changes were proposed in this pull request?
1. add `assert(resolve(before) === after)` to check before and after in test of resolveURI.
the function `assertResolves(before: String, after: String)` have two params, it means we should check the before value whether equals the after value which we want.
e.g. the after value of Utils.resolveURI("hdfs:///root/spark.jar#app.jar").toString should be "hdfs:///root/spark.jar#app.jar" rather than "hdfs:/root/spark.jar#app.jar". we need `assert(resolve(before) === after)` to make it more safe.
2. identify the cases between resolveURI and resolveURIs.
3. delete duplicate cases and some small fix make this suit more clear.
## How was this patch tested?
unit tests
Author: zuotingbing <zuo.tingbing9@zte.com.cn>
Closes#18158 from zuotingbing/spark-UtilsSuite.
## What changes were proposed in this pull request?
In [this line](f7cf2096fd/core/src/main/scala/org/apache/spark/scheduler/cluster/CoarseGrainedSchedulerBackend.scala (L128)), it uses the `executorId` string received from executors and finally it will go into `TaskUIData`. As deserializing the `executorId` string will always create a new instance, we have a lot of duplicated string instances.
This PR does a String interning for TaskUIData to reduce the memory usage.
## How was this patch tested?
Manually test using `bin/spark-shell --master local-cluster[6,1,1024]`. Test codes:
```
for (_ <- 1 to 10) { sc.makeRDD(1 to 1000, 1000).count() }
Thread.sleep(2000)
val l = sc.getClass.getMethod("jobProgressListener").invoke(sc).asInstanceOf[org.apache.spark.ui.jobs.JobProgressListener]
org.apache.spark.util.SizeEstimator.estimate(l.stageIdToData)
```
This PR reduces the size of `stageIdToData` from 3487280 to 3009744 (86.3%) in the above case.
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#18177 from zsxwing/SPARK-20955.
## What changes were proposed in this pull request?
Hadoop FileSystem's statistics in based on thread local variables, this is ok if the RDD computation chain is running in the same thread. But if child RDD creates another thread to consume the iterator got from Hadoop RDDs, the bytesRead computation will be error, because now the iterator's `next()` and `close()` may run in different threads. This could be happened when using PySpark with PythonRDD.
So here building a map to track the `bytesRead` for different thread and add them together. This method will be used in three RDDs, `HadoopRDD`, `NewHadoopRDD` and `FileScanRDD`. I assume `FileScanRDD` cannot be called directly, so I only fixed `HadoopRDD` and `NewHadoopRDD`.
## How was this patch tested?
Unit test and local cluster verification.
Author: jerryshao <sshao@hortonworks.com>
Closes#17617 from jerryshao/SPARK-20244.
## What changes were proposed in this pull request?
`IllegalAccessError` is a fatal error (a subclass of LinkageError) and its meaning is `Thrown if an application attempts to access or modify a field, or to call a method that it does not have access to`. Throwing a fatal error for AccumulatorV2 is not necessary and is pretty bad because it usually will just kill executors or SparkContext ([SPARK-20666](https://issues.apache.org/jira/browse/SPARK-20666) is an example of killing SparkContext due to `IllegalAccessError`). I think the correct type of exception in AccumulatorV2 should be `IllegalStateException`.
## How was this patch tested?
Jenkins
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#18168 from zsxwing/SPARK-20940.
## What changes were proposed in this pull request?
ShuffleId is determined before job submitted. But it's hard to predict stageId by shuffleId.
Stage is created in DAGScheduler(
https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/scheduler/DAGScheduler.scala#L381), but the order is n
ot determined in `HashSet`.
I added a log(println(s"Creating ShufflMapStage-$id on shuffle-${shuffleDep.shuffleId}")) after (https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/scheduler/DAGScheduler.scala#L331), when testing BasicSchedulerIntegrationSuite:"multi-stage job". It will print:
Creating ShufflMapStage-0 on shuffle-0
Creating ShufflMapStage-1 on shuffle-2
Creating ShufflMapStage-2 on shuffle-1
Creating ShufflMapStage-3 on shuffle-3
or
Creating ShufflMapStage-0 on shuffle-1
Creating ShufflMapStage-1 on shuffle-3
Creating ShufflMapStage-2 on shuffle-0
Creating ShufflMapStage-3 on shuffle-2
It might be better to avoid generating the MapStatus by stageId.
Author: jinxing <jinxing6042@126.com>
Closes#17603 from jinxing64/SPARK-20288.
## What changes were proposed in this pull request?
Current HistoryServer will display completed date of in-progress application as `1969-12-31 23:59:59`, which is not so meaningful. Instead of unnecessarily showing this incorrect completed date, here propose to make this column invisible for in-progress applications.
The purpose of only making this column invisible rather than deleting this field is that: this data is fetched through REST API, and in the REST API the format is like below shows, in which `endTime` matches `endTimeEpoch`. So instead of changing REST API to break backward compatibility, here choosing a simple solution to only make this column invisible.
```
[ {
"id" : "local-1491805439678",
"name" : "Spark shell",
"attempts" : [ {
"startTime" : "2017-04-10T06:23:57.574GMT",
"endTime" : "1969-12-31T23:59:59.999GMT",
"lastUpdated" : "2017-04-10T06:23:57.574GMT",
"duration" : 0,
"sparkUser" : "",
"completed" : false,
"startTimeEpoch" : 1491805437574,
"endTimeEpoch" : -1,
"lastUpdatedEpoch" : 1491805437574
} ]
} ]%
```
Here is UI before changed:
<img width="1317" alt="screen shot 2017-04-10 at 3 45 57 pm" src="https://cloud.githubusercontent.com/assets/850797/24851938/17d46cc0-1e08-11e7-84c7-90120e171b41.png">
And after:
<img width="1281" alt="screen shot 2017-04-10 at 4 02 35 pm" src="https://cloud.githubusercontent.com/assets/850797/24851945/1fe9da58-1e08-11e7-8d0d-9262324f9074.png">
## How was this patch tested?
Manual verification.
Author: jerryshao <sshao@hortonworks.com>
Closes#17588 from jerryshao/SPARK-20275.
## What changes were proposed in this pull request?
Fix test
"don't submit stage until its dependencies map outputs are registered (SPARK-5259)" ,
"run trivial shuffle with out-of-band executor failure and retry",
"reduce tasks should be placed locally with map output"
in DAGSchedulerSuite.
Author: jinxing <jinxing6042@126.com>
Closes#17634 from jinxing64/SPARK-20333.
[https://issues.apache.org/jira/browse/SPARK-20875](https://issues.apache.org/jira/browse/SPARK-20875)
When the "deleteRecursively" method is invoked,spark doesn't print any log if the path was deleted.For example,spark only print "Removing directory" when the worker began cleaning spark.work.dir,but didn't print any log about "the path has been delete".So, I can't judge whether the path was deleted form the worker's logfile,If there is any accidents about Linux.
Author: liuzhaokun <liu.zhaokun@zte.com.cn>
Closes#18102 from liu-zhaokun/master_log.
## What changes were proposed in this pull request?
Add a `worker` configuration to set how long to wait before forcibly killing driver.
## How was this patch tested?
Jenkins
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#18126 from zsxwing/SPARK-20843.
## What changes were proposed in this pull request?
This PR includes some minor improvement for the comments and tests in https://github.com/apache/spark/pull/16989
## How was this patch tested?
N/A
Author: Wenchen Fan <wenchen@databricks.com>
Closes#18117 from cloud-fan/follow.
## What changes were proposed in this pull request?
This PR makes spark-submit script download remote files to local file system for local/standalone client mode.
## How was this patch tested?
- Unit tests
- Manual tests by adding s3a jar and testing against file on s3.
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Yu Peng <loneknightpy@gmail.com>
Closes#18078 from loneknightpy/download-jar-in-spark-submit.
## What changes were proposed in this pull request?
When the individual partition size in a spill is small, mergeSpillsWithTransferTo method does many small disk ios which is really inefficient. One way to improve the performance will be to use mergeSpillsWithFileStream method by turning off transfer to and using buffered file read/write to improve the io throughput.
However, the current implementation of mergeSpillsWithFileStream does not do a buffer read/write of the files and in addition to that it unnecessarily flushes the output files for each partitions.
## How was this patch tested?
Tested this change by running a job on the cluster and the map stage run time was reduced by around 20%.
Author: Sital Kedia <skedia@fb.com>
Closes#17343 from sitalkedia/upstream_mergeSpillsWithFileStream.
## What changes were proposed in this pull request?
In my test, the submitted app running with out an error when the --total-executor-cores less than 0
and given the warnings:
"2017-05-22 17:19:36,319 WARN org.apache.spark.scheduler.TaskSchedulerImpl: Initial job has not accepted any resources; check your cluster UI to ensure that workers are registered and have sufficient resources";
It should exit directly when the --total-executor-cores parameter is setted less than 0 when submit a application
(Please fill in changes proposed in this fix)
## How was this patch tested?
Run the ut tests
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: 10129659 <chen.yanshan@zte.com.cn>
Closes#18060 from eatoncys/totalcores.
## What changes were proposed in this pull request?
`ConfigBuilder` builds `ConfigEntry` which can only read value with one key, if we wanna change the config name but still keep the old one, it's hard to do.
This PR introduce `ConfigBuilder.withAlternative`, to support reading config value with alternative keys. And also rename `spark.scheduler.listenerbus.eventqueue.size` to `spark.scheduler.listenerbus.eventqueue.capacity` with this feature, according to https://github.com/apache/spark/pull/14269#discussion_r118432313
## How was this patch tested?
a new test
Author: Wenchen Fan <wenchen@databricks.com>
Closes#18110 from cloud-fan/config.
## What changes were proposed in this pull request?
Long time ago we fixed a [bug](https://issues.apache.org/jira/browse/SPARK-3948) in shuffle writer about `FileChannel.transferTo`. We were not very confident about that fix, so we added a position check after the writing, try to discover the bug earlier.
However this checking is missing in the new `UnsafeShuffleWriter`, this PR adds it.
https://issues.apache.org/jira/browse/SPARK-18105 maybe related to that `FileChannel.transferTo` bug, hopefully we can find out the root cause after adding this position check.
## How was this patch tested?
N/A
Author: Wenchen Fan <wenchen@databricks.com>
Closes#18091 from cloud-fan/shuffle.
## What changes were proposed in this pull request?
This PR proposes two things:
- A follow up for SPARK-19707 (Improving the invalid path check for sc.addJar on Windows as well).
```
org.apache.spark.SparkContextSuite:
- add jar with invalid path *** FAILED *** (32 milliseconds)
2 was not equal to 1 (SparkContextSuite.scala:309)
...
```
- Fix path vs URI related test failures on Windows.
```
org.apache.spark.storage.LocalDirsSuite:
- SPARK_LOCAL_DIRS override also affects driver *** FAILED *** (0 milliseconds)
new java.io.File("/NONEXISTENT_PATH").exists() was true (LocalDirsSuite.scala:50)
...
- Utils.getLocalDir() throws an exception if any temporary directory cannot be retrieved *** FAILED *** (15 milliseconds)
Expected exception java.io.IOException to be thrown, but no exception was thrown. (LocalDirsSuite.scala:64)
...
```
```
org.apache.spark.sql.hive.HiveSchemaInferenceSuite:
- orc: schema should be inferred and saved when INFER_AND_SAVE is specified *** FAILED *** (203 milliseconds)
java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-dae61ab3-a851-4dd3-bf4e-be97c501f254
...
- parquet: schema should be inferred and saved when INFER_AND_SAVE is specified *** FAILED *** (203 milliseconds)
java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-fa3aff89-a66e-4376-9a37-2a9b87596939
...
- orc: schema should be inferred but not stored when INFER_ONLY is specified *** FAILED *** (141 milliseconds)
java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-fb464e59-b049-481b-9c75-f53295c9fc2c
...
- parquet: schema should be inferred but not stored when INFER_ONLY is specified *** FAILED *** (125 milliseconds)
java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-9487568e-80a4-42b3-b0a5-d95314c4ccbc
...
- orc: schema should not be inferred when NEVER_INFER is specified *** FAILED *** (156 milliseconds)
java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-0d2dfa45-1b0f-4958-a8be-1074ed0135a
...
- parquet: schema should not be inferred when NEVER_INFER is specified *** FAILED *** (547 milliseconds)
java.net.URISyntaxException: Illegal character in opaque part at index 2: C:\projects\spark\target\tmp\spark-6d95d64e-613e-4a59-a0f6-d198c5aa51ee
...
```
```
org.apache.spark.sql.execution.command.DDLSuite:
- create temporary view using *** FAILED *** (15 milliseconds)
org.apache.spark.sql.AnalysisException: Path does not exist: file:/C:projectsspark arget mpspark-3881d9ca-561b-488d-90b9-97587472b853 mp;
...
- insert data to a data source table which has a non-existing location should succeed *** FAILED *** (109 milliseconds)
file:/C:projectsspark%09arget%09mpspark-4cad3d19-6085-4b75-b407-fe5e9d21df54 did not equal file:///C:/projects/spark/target/tmp/spark-4cad3d19-6085-4b75-b407-fe5e9d21df54 (DDLSuite.scala:1869)
...
- insert into a data source table with a non-existing partition location should succeed *** FAILED *** (94 milliseconds)
file:/C:projectsspark%09arget%09mpspark-4b52e7de-e3aa-42fd-95d4-6d4d58d1d95d did not equal file:///C:/projects/spark/target/tmp/spark-4b52e7de-e3aa-42fd-95d4-6d4d58d1d95d (DDLSuite.scala:1910)
...
- read data from a data source table which has a non-existing location should succeed *** FAILED *** (93 milliseconds)
file:/C:projectsspark%09arget%09mpspark-f8c281e2-08c2-4f73-abbf-f3865b702c34 did not equal file:///C:/projects/spark/target/tmp/spark-f8c281e2-08c2-4f73-abbf-f3865b702c34 (DDLSuite.scala:1937)
...
- read data from a data source table with non-existing partition location should succeed *** FAILED *** (110 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- create datasource table with a non-existing location *** FAILED *** (94 milliseconds)
file:/C:projectsspark%09arget%09mpspark-387316ae-070c-4e78-9b78-19ebf7b29ec8 did not equal file:///C:/projects/spark/target/tmp/spark-387316ae-070c-4e78-9b78-19ebf7b29ec8 (DDLSuite.scala:1982)
...
- CTAS for external data source table with a non-existing location *** FAILED *** (16 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- CTAS for external data source table with a existed location *** FAILED *** (15 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- data source table:partition column name containing a b *** FAILED *** (125 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- data source table:partition column name containing a:b *** FAILED *** (143 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- data source table:partition column name containing a%b *** FAILED *** (109 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- data source table:partition column name containing a,b *** FAILED *** (109 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- location uri contains a b for datasource table *** FAILED *** (94 milliseconds)
file:/C:projectsspark%09arget%09mpspark-5739cda9-b702-4e14-932c-42e8c4174480a%20b did not equal file:///C:/projects/spark/target/tmp/spark-5739cda9-b702-4e14-932c-42e8c4174480/a%20b (DDLSuite.scala:2084)
...
- location uri contains a:b for datasource table *** FAILED *** (78 milliseconds)
file:/C:projectsspark%09arget%09mpspark-9bdd227c-840f-4f08-b7c5-4036638f098da:b did not equal file:///C:/projects/spark/target/tmp/spark-9bdd227c-840f-4f08-b7c5-4036638f098d/a:b (DDLSuite.scala:2084)
...
- location uri contains a%b for datasource table *** FAILED *** (78 milliseconds)
file:/C:projectsspark%09arget%09mpspark-62bb5f1d-fa20-460a-b534-cb2e172a3640a%25b did not equal file:///C:/projects/spark/target/tmp/spark-62bb5f1d-fa20-460a-b534-cb2e172a3640/a%25b (DDLSuite.scala:2084)
...
- location uri contains a b for database *** FAILED *** (16 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- location uri contains a:b for database *** FAILED *** (15 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- location uri contains a%b for database *** FAILED *** (0 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
```
```
org.apache.spark.sql.hive.execution.HiveDDLSuite:
- create hive table with a non-existing location *** FAILED *** (16 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- CTAS for external hive table with a non-existing location *** FAILED *** (16 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- CTAS for external hive table with a existed location *** FAILED *** (16 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- partition column name of parquet table containing a b *** FAILED *** (156 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- partition column name of parquet table containing a:b *** FAILED *** (94 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- partition column name of parquet table containing a%b *** FAILED *** (125 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- partition column name of parquet table containing a,b *** FAILED *** (110 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
- partition column name of hive table containing a b *** FAILED *** (15 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- partition column name of hive table containing a:b *** FAILED *** (16 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- partition column name of hive table containing a%b *** FAILED *** (16 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- partition column name of hive table containing a,b *** FAILED *** (0 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- hive table: location uri contains a b *** FAILED *** (0 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- hive table: location uri contains a:b *** FAILED *** (0 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
- hive table: location uri contains a%b *** FAILED *** (0 milliseconds)
org.apache.spark.sql.AnalysisException: org.apache.hadoop.hive.ql.metadata.HiveException: MetaException(message:java.lang.IllegalArgumentException: Can not create a Path from an empty string);
...
```
```
org.apache.spark.sql.sources.PathOptionSuite:
- path option also exist for write path *** FAILED *** (94 milliseconds)
file:/C:projectsspark%09arget%09mpspark-2870b281-7ac0-43d6-b6b6-134e01ab6fdc did not equal file:///C:/projects/spark/target/tmp/spark-2870b281-7ac0-43d6-b6b6-134e01ab6fdc (PathOptionSuite.scala:98)
...
```
```
org.apache.spark.sql.CachedTableSuite:
- SPARK-19765: UNCACHE TABLE should un-cache all cached plans that refer to this table *** FAILED *** (110 milliseconds)
java.lang.IllegalArgumentException: Can not create a Path from an empty string
...
```
```
org.apache.spark.sql.execution.DataSourceScanExecRedactionSuite:
- treeString is redacted *** FAILED *** (250 milliseconds)
"file:/C:/projects/spark/target/tmp/spark-3ecc1fa4-3e76-489c-95f4-f0b0500eae28" did not contain "C:\projects\spark\target\tmp\spark-3ecc1fa4-3e76-489c-95f4-f0b0500eae28" (DataSourceScanExecRedactionSuite.scala:46)
...
```
## How was this patch tested?
Tested via AppVeyor for each and checked it passed once each. These should be retested via AppVeyor in this PR.
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#17987 from HyukjinKwon/windows-20170515.
## What changes were proposed in this pull request?
Currently the whole block is fetched into memory(off heap by default) when shuffle-read. A block is defined by (shuffleId, mapId, reduceId). Thus it can be large when skew situations. If OOM happens during shuffle read, job will be killed and users will be notified to "Consider boosting spark.yarn.executor.memoryOverhead". Adjusting parameter and allocating more memory can resolve the OOM. However the approach is not perfectly suitable for production environment, especially for data warehouse.
Using Spark SQL as data engine in warehouse, users hope to have a unified parameter(e.g. memory) but less resource wasted(resource is allocated but not used). The hope is strong especially when migrating data engine to Spark from another one(e.g. Hive). Tuning the parameter for thousands of SQLs one by one is very time consuming.
It's not always easy to predict skew situations, when happen, it make sense to fetch remote blocks to disk for shuffle-read, rather than kill the job because of OOM.
In this pr, I propose to fetch big blocks to disk(which is also mentioned in SPARK-3019):
1. Track average size and also the outliers(which are larger than 2*avgSize) in MapStatus;
2. Request memory from `MemoryManager` before fetch blocks and release the memory to `MemoryManager` when `ManagedBuffer` is released.
3. Fetch remote blocks to disk when failing acquiring memory from `MemoryManager`, otherwise fetch to memory.
This is an improvement for memory control when shuffle blocks and help to avoid OOM in scenarios like below:
1. Single huge block;
2. Sizes of many blocks are underestimated in `MapStatus` and the actual footprint of blocks is much larger than the estimated.
## How was this patch tested?
Added unit test in `MapStatusSuite` and `ShuffleBlockFetcherIteratorSuite`.
Author: jinxing <jinxing6042@126.com>
Closes#16989 from jinxing64/SPARK-19659.
## What changes were proposed in this pull request?
Currently, when a task is calling spill() but it receives a killing request from driver (e.g., speculative task), the `TaskMemoryManager` will throw an `OOM` exception. And we don't catch `Fatal` exception when a error caused by `Thread.interrupt`. So for `ClosedByInterruptException`, we should throw `RuntimeException` instead of `OutOfMemoryError`.
https://issues.apache.org/jira/browse/SPARK-20250?jql=project%20%3D%20SPARK
## How was this patch tested?
Existing unit tests.
Author: Xianyang Liu <xianyang.liu@intel.com>
Closes#18090 from ConeyLiu/SPARK-20250.
The DAGScheduler was sending a "stage submitted" event before it properly
updated the event's information. This meant that a listener (e.g. the
even logging listener) could record wrong information about the event.
This change sets the stage's submission time before the event is submitted,
when there are tasks to be executed in the stage.
Tested with existing unit tests.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#17925 from vanzin/SPARK-20205.
## What changes were proposed in this pull request?
When a TaskContext is not propagated properly to all child threads for the task, just like the reported cases in this issue, we fail to get to TID from TaskContext and that causes unable to release the lock and assertion failures. To resolve this, we have to explicitly pass the TID value to the `unlock` method.
## How was this patch tested?
Add new failing regression test case in `RDDSuite`.
Author: Xingbo Jiang <xingbo.jiang@databricks.com>
Closes#18076 from jiangxb1987/completion-iterator.
## What changes were proposed in this pull request?
- Add a null check to RPackageUtils#checkManifestForR so that jars w/o manifests don't NPE.
## How was this patch tested?
- Unit tests and manual tests.
Author: James Shuster <jshuster@palantir.com>
Closes#18040 from jrshust/feature/r-package-utils.
## What changes were proposed in this pull request?
Currently, when number of reduces is above 2000, HighlyCompressedMapStatus is used to store size of blocks. in HighlyCompressedMapStatus, only average size is stored for non empty blocks. Which is not good for memory control when we shuffle blocks. It makes sense to store the accurate size of block when it's above threshold.
## How was this patch tested?
Added test in MapStatusSuite.
Author: jinxing <jinxing6042@126.com>
Closes#18031 from jinxing64/SPARK-20801.
## What changes were proposed in this pull request?
On status column of the table, I removed the condition that forced only the display value to take on values Active, Blacklisted and Dead.
Before the removal, values used for sort and filter for that particular column was True and False.
## How was this patch tested?
Tested with Active, Blacklisted and Dead present as current status.
Author: John Lee <jlee2@yahoo-inc.com>
Closes#18036 from yoonlee95/SPARK-20813.
## What changes were proposed in this pull request?
This PR solution to run the SortShuffleSuite unit tests have residual spark_* system directory
For example:
OS:Windows 7
After the running SortShuffleSuite unit tests,
the system of TMP directory have '..\AppData\Local\Temp\spark-f64121f9-11b4-4ffd-a4f0-cfca66643503' not deleted
## How was this patch tested?
Run SortShuffleSuite unit test.
Author: caoxuewen <cao.xuewen@zte.com.cn>
Closes#17869 from heary-cao/SortShuffleSuite.
## What changes were proposed in this pull request?
Modified succeeded num in job detail page from "completed = stageData.completedIndices.size" to "completed = stageData.numCompleteTasks",which making succeeded tasks num in all jobs page and job detail page look more consistent, and more easily to find which stages the speculative task(s) were in.
## How was this patch tested?
manual tests
Author: fjh100456 <fu.jinhua6@zte.com.cn>
Closes#17923 from fjh100456/master.
## What changes were proposed in this pull request?
This PR update to two:
1.adds the new unit tests.
testing would be performed when there is no shuffle stage,
shuffle will not generate the data file and the index files.
2.Modify the '[SPARK-4085] rerun map stage if reduce stage cannot find its local shuffle file' unit test,
parallelize is 1 but not is 2, Check the index file and delete.
## How was this patch tested?
The new unit test.
Author: caoxuewen <cao.xuewen@zte.com.cn>
Closes#17868 from heary-cao/ShuffleSuite.
## What changes were proposed in this pull request?
Add `ThreadUtils.awaitReady` similar to `ThreadUtils.awaitResult` and disallow `Await.ready`.
## How was this patch tested?
Jenkins
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#17763 from zsxwing/awaitready.
## What changes were proposed in this pull request?
Executor task reaper may fail to detect if a task is finished or not when a task is finishing but being killed at the same time.
The fix is pretty easy, just flip the "finished" flag when a task is successful.
## How was this patch tested?
Jenkins
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#18021 from zsxwing/SPARK-20788.
## What changes were proposed in this pull request?
In
```
./bin/spark-shell --master=local[64]
```
I ran
```
sc.parallelize(1 to 100000, 100000).count()
```
and profiled the time spend in the LiveListenerBus event processing thread. I discovered that the majority of the time was being spent in `TaskMetrics.empty` calls in `JobProgressListener.onTaskStart`. It turns out that we can slightly refactor to remove the need to construct one empty instance per call, greatly improving the performance of this code.
The performance gains here help to avoid an issue where listener events would be dropped because the JobProgressListener couldn't keep up with the throughput.
**Before:**
**After:**
## How was this patch tested?
Benchmarks described above.
Author: Josh Rosen <joshrosen@databricks.com>
Closes#18008 from JoshRosen/nametoaccums-improvements.
## What changes were proposed in this pull request?
In the current codes, when worker connects to master, master will send its address to the worker. Then worker will save this address and use it to reconnect in case of failure. However, sometimes, this address is not correct. If there is a proxy between master and worker, the address master sent is not the address of proxy.
In this PR, the master address used by the worker will be sent to the master, then master just replies this address back, worker will use this address to reconnect in case of failure. In other words, the worker will use the config master address set in the worker side if possible rather than the master address set in the master side.
There is still one potential issue though. When a master is restarted or takes over leadership, the work will use the address sent from the master to connect. If there is still a proxy between master and worker, the address may be wrong. However, there is no way to figure it out just in the worker.
## How was this patch tested?
The new added unit test.
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#17821 from zsxwing/SPARK-20529.
## What changes were proposed in this pull request?
After https://github.com/apache/spark/pull/17596 , we do not send internal accumulator name to executor side anymore, and always look up the accumulator name in `AccumulatorContext`.
This cause a regression if the accumulator is already garbage collected, this PR fixes this by still sending accumulator name for `SQLMetrics`.
## How was this patch tested?
N/A
Author: Wenchen Fan <wenchen@databricks.com>
Closes#17931 from cloud-fan/bug.
## What changes were proposed in this pull request?
When the number of spark worker executors is large, if the specific number is displayed, will better help us to analyze and observe by spark ui.
Although this is a small improvement, but it is indeed very valuable.
After fix:
## How was this patch tested?
manual tests
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>
Closes#17961 from guoxiaolongzte/SPARK-20720.
## What changes were proposed in this pull request?
When you open the master page, when you use Firefox or Google Chrom, the console of Firefox or Google Chrome is wrong. But The IE is no problem.
e.g.
My Firefox version is 48.0.2.
My Google Chrome version is 49.0.2623.75 m.
## How was this patch tested?
manual tests
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>
Closes#17952 from guoxiaolongzte/SPARK-20705.
## What changes were proposed in this pull request?
This PR adds an `error` parameter to `TaskContextImpl.markTaskCompleted` to propagate the original error.
It also fixes an issue that `TaskCompletionListenerException.getMessage` doesn't include `previousError`.
## How was this patch tested?
New unit tests.
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#17942 from zsxwing/SPARK-20702.
## What changes were proposed in this pull request?
Remove uses of scala.language.reflectiveCalls that are either unnecessary or probably resulting in more complex code. This turned out to be less significant than I thought, but, still worth a touch-up.
## How was this patch tested?
Existing tests.
Author: Sean Owen <sowen@cloudera.com>
Closes#17949 from srowen/SPARK-20554.
## What changes were proposed in this pull request?
This PR proposes to fix the lint-breaks as below:
```
[ERROR] src/main/java/org/apache/spark/unsafe/Platform.java:[51] (regexp) RegexpSingleline: No trailing whitespace allowed.
[ERROR] src/main/scala/org/apache/spark/sql/streaming/Trigger.java:[45,25] (naming) MethodName: Method name 'ProcessingTime' must match pattern '^[a-z][a-z0-9][a-zA-Z0-9_]*$'.
[ERROR] src/main/scala/org/apache/spark/sql/streaming/Trigger.java:[62,25] (naming) MethodName: Method name 'ProcessingTime' must match pattern '^[a-z][a-z0-9][a-zA-Z0-9_]*$'.
[ERROR] src/main/scala/org/apache/spark/sql/streaming/Trigger.java:[78,25] (naming) MethodName: Method name 'ProcessingTime' must match pattern '^[a-z][a-z0-9][a-zA-Z0-9_]*$'.
[ERROR] src/main/scala/org/apache/spark/sql/streaming/Trigger.java:[92,25] (naming) MethodName: Method name 'ProcessingTime' must match pattern '^[a-z][a-z0-9][a-zA-Z0-9_]*$'.
[ERROR] src/main/scala/org/apache/spark/sql/streaming/Trigger.java:[102,25] (naming) MethodName: Method name 'Once' must match pattern '^[a-z][a-z0-9][a-zA-Z0-9_]*$'.
[ERROR] src/test/java/org/apache/spark/streaming/kinesis/JavaKinesisInputDStreamBuilderSuite.java:[28,8] (imports) UnusedImports: Unused import - org.apache.spark.streaming.api.java.JavaDStream.
```
after:
```
dev/lint-java
Checkstyle checks passed.
```
[Test Result](https://travis-ci.org/ConeyLiu/spark/jobs/229666169)
## How was this patch tested?
Travis CI
Author: Xianyang Liu <xianyang.liu@intel.com>
Closes#17890 from ConeyLiu/codestyle.
## What changes were proposed in this pull request?
Add stripXSS and stripXSSMap to Spark Core's UIUtils. Calling these functions at any point that getParameter is called against a HttpServletRequest.
## How was this patch tested?
Unit tests, IBM Security AppScan Standard no longer showing vulnerabilities, manual verification of WebUI pages.
Author: NICHOLAS T. MARION <nmarion@us.ibm.com>
Closes#17686 from n-marion/xss-fix.
## What changes were proposed in this pull request?
A few comments around the code mention RDD classes that do not exist anymore. I'm not sure of the best way to replace these, so I've just removed them here.
## How was this patch tested?
Only changes code comments, no testing required
Author: Michael Mior <mmior@uwaterloo.ca>
Closes#17900 from michaelmior/remove-old-rdds.
## What changes were proposed in this pull request?
#14617 added new columns to the executor table causing the visibility checks for the logs and threadDump columns to toggle the wrong columns since they used hard-coded column numbers.
I've updated the checks to use column names instead of numbers so future updates don't accidentally break this again.
Note: This will also need to be back ported into 2.2 since #14617 was merged there
## How was this patch tested?
Manually tested
Author: Alex Bozarth <ajbozart@us.ibm.com>
Closes#17904 from ajbozarth/spark20630.
## What changes were proposed in this pull request?
Spark Version for a specific application is not displayed on the history page now. It should be nice to switch the spark version on the UI when we click on the specific application.
Currently there seems to be way as SparkListenerLogStart records the application version. So, it should be trivial to listen to this event and provision this change on the UI.
For Example
<img width="1439" alt="screen shot 2017-04-06 at 3 23 41 pm" src="https://cloud.githubusercontent.com/assets/8295799/25092650/41f3970a-2354-11e7-9b0d-4646d0adeb61.png">
<img width="1399" alt="screen shot 2017-04-17 at 9 59 33 am" src="https://cloud.githubusercontent.com/assets/8295799/25092743/9f9e2f28-2354-11e7-9605-f2f1c63f21fe.png">
{"Event":"SparkListenerLogStart","Spark Version":"2.0.0"}
(Please fill in changes proposed in this fix)
Modified the SparkUI for History server to listen to SparkLogListenerStart event and extract the version and print it.
## How was this patch tested?
Manual testing of UI page. Attaching the UI screenshot changes here
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Sanket <schintap@untilservice-lm>
Closes#17658 from redsanket/SPARK-20355.
## What changes were proposed in this pull request?
After SPARK-10997, client mode Netty RpcEnv doesn't require to start server, so port configurations are not used any more, here propose to remove these two configurations: "spark.executor.port" and "spark.am.port".
## How was this patch tested?
Existing UTs.
Author: jerryshao <sshao@hortonworks.com>
Closes#17866 from jerryshao/SPARK-20605.
## What changes were proposed in this pull request?
When call the method getLocations of BlockManager, we only compare the data block host. Random selection for non-local data blocks, this may cause the selected data block to be in a different rack. So in this patch to increase the sort of the rack.
## How was this patch tested?
New test case.
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Xianyang Liu <xianyang.liu@intel.com>
Closes#17300 from ConeyLiu/blockmanager.
Signed-off-by: liuxian <liu.xian3zte.com.cn>
## What changes were proposed in this pull request?
When the input parameter is null, may be a runtime exception occurs
## How was this patch tested?
Existing unit tests
Author: liuxian <liu.xian3@zte.com.cn>
Closes#17796 from 10110346/wip_lx_0428.
## What changes were proposed in this pull request?
This PR adds the new unit tests to support ShuffleDataBlockId , ShuffleIndexBlockId , TempShuffleBlockId , TempLocalBlockId
## How was this patch tested?
The new unit test.
Author: caoxuewen <cao.xuewen@zte.com.cn>
Closes#17794 from heary-cao/blockidsuite.
## What changes were proposed in this pull request?
Fix build warnings primarily related to Breeze 0.13 operator changes, Java style problems
## How was this patch tested?
Existing tests
Author: Sean Owen <sowen@cloudera.com>
Closes#17803 from srowen/SPARK-20523.
## What changes were proposed in this pull request?
To better understand this problem, let's take a look at an example first:
```
object Main {
def main(args: Array[String]): Unit = {
var t = new Test
new Thread(new Runnable {
override def run() = {}
}).start()
println("first thread finished")
t.a = null
t = new Test
new Thread(new Runnable {
override def run() = {}
}).start()
}
}
class Test {
var a = new InheritableThreadLocal[String] {
override protected def childValue(parent: String): String = {
println("parent value is: " + parent)
parent
}
}
a.set("hello")
}
```
The result is:
```
parent value is: hello
first thread finished
parent value is: hello
parent value is: hello
```
Once an `InheritableThreadLocal` has been set value, child threads will inherit its value as long as it has not been GCed, so setting the variable which holds the `InheritableThreadLocal` to `null` doesn't work as we expected.
In `SparkContext`, we have an `InheritableThreadLocal` for local properties, we should clear it when stopping `SparkContext`, or all the future child threads will still inherit it and copy the properties and waste memory.
This is the root cause of https://issues.apache.org/jira/browse/SPARK-20548 , which creates/stops `SparkContext` many times and finally have a lot of `InheritableThreadLocal` alive, and cause OOM when starting new threads in the internal thread pools.
## How was this patch tested?
N/A
Author: Wenchen Fan <wenchen@databricks.com>
Closes#17833 from cloud-fan/core.
In the previous patch I deprecated StorageStatus, but not the
method in SparkContext that exposes that class publicly. So deprecate
the method too.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#17824 from vanzin/SPARK-20421.
There are two problems fixed in this commit. First, the
ExecutorAllocationManager sets a timeout to avoid requesting executors
too often. However, the timeout is always updated based on its value and
a timeout, not the current time. If the call is delayed by locking for
more than the ongoing scheduler timeout, the manager will request more
executors on every run. This seems to be the main cause of SPARK-20540.
The second problem is that the total number of requested executors is
not tracked by the CoarseGrainedSchedulerBackend. Instead, it calculates
the value based on the current status of 3 variables: the number of
known executors, the number of executors that have been killed, and the
number of pending executors. But, the number of pending executors is
never less than 0, even though there may be more known than requested.
When executors are killed and not replaced, this can cause the request
sent to YARN to be incorrect because there were too many executors due
to the scheduler's state being slightly out of date. This is fixed by tracking
the currently requested size explicitly.
## How was this patch tested?
Existing tests.
Author: Ryan Blue <blue@apache.org>
Closes#17813 from rdblue/SPARK-20540-fix-dynamic-allocation.
The download link in history server UI is concatenated with:
```
<td><a href="{{uiroot}}/api/v1/applications/{{id}}/{{num}}/logs" class="btn btn-info btn-mini">Download</a></td>
```
Here `num` field represents number of attempts, this is not equal to REST APIs. In the REST API, if attempt id is not existed the URL should be `api/v1/applications/<id>/logs`, otherwise the URL should be `api/v1/applications/<id>/<attemptId>/logs`. Using `<num>` to represent `<attemptId>` will lead to the issue of "no such app".
Manual verification.
CC ajbozarth can you please review this change, since you add this feature before? Thanks!
Author: jerryshao <sshao@hortonworks.com>
Closes#17795 from jerryshao/SPARK-20517.
## What changes were proposed in this pull request?
This PR adds RDD checkpoint compression support and add a new config `spark.checkpoint.compress` to enable/disable it. Credit goes to aramesh117
Closes#17024
## How was this patch tested?
The new unit test.
Author: Shixiong Zhu <shixiong@databricks.com>
Author: Aaditya Ramesh <aramesh@conviva.com>
Closes#17789 from zsxwing/pr17024.
Upgrade Jetty so it can work with Hadoop 3 (alpha 2 release, in particular).
Without this change, because of incompatibily between Jetty versions,
Spark fails to compile when built against Hadoop 3
## How was this patch tested?
Unit tests being run.
Author: Mark Grover <mark@apache.org>
Closes#17790 from markgrover/spark-20514.
## What changes were proposed in this pull request?
This PR proposes to throw an exception with better message rather than `ArrayIndexOutOfBoundsException` when temp directories could not be created.
Running the commands below:
```bash
./bin/spark-shell --conf spark.local.dir=/NONEXISTENT_DIR_ONE,/NONEXISTENT_DIR_TWO
```
produces ...
**Before**
```
Exception in thread "main" java.lang.ExceptionInInitializerError
...
Caused by: java.lang.ArrayIndexOutOfBoundsException: 0
...
```
**After**
```
Exception in thread "main" java.lang.ExceptionInInitializerError
...
Caused by: java.io.IOException: Failed to get a temp directory under [/NONEXISTENT_DIR_ONE,/NONEXISTENT_DIR_TWO].
...
```
## How was this patch tested?
Unit tests in `LocalDirsSuite.scala`.
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#17768 from HyukjinKwon/throws-temp-dir-exception.
## What changes were proposed in this pull request?
When sending accumulator updates back to driver, the network overhead is pretty big as there are a lot of accumulators, e.g. `TaskMetrics` will send about 20 accumulators everytime, there may be a lot of `SQLMetric` if the query plan is complicated.
Therefore, it's critical to reduce the size of serialized accumulator. A simple way is to not send the name of internal accumulators to executor side, as it's unnecessary. When executor sends accumulator updates back to driver, we can look up the accumulator name in `AccumulatorContext` easily. Note that, we still need to send names of normal accumulators, as the user code run at executor side may rely on accumulator names.
In the future, we should reimplement `TaskMetrics` to not rely on accumulators and use custom serialization.
Tried on the example in https://issues.apache.org/jira/browse/SPARK-12837, the size of serialized accumulator has been cut down by about 40%.
## How was this patch tested?
existing tests.
Author: Wenchen Fan <wenchen@databricks.com>
Closes#17596 from cloud-fan/oom.
## What changes were proposed in this pull request?
This PR changes Executor's threads to `UninterruptibleThread` so that we can use `runUninterruptibly` in `CachedKafkaConsumer`. However, this is just best effort to avoid hanging forever. If the user uses`CachedKafkaConsumer` in another thread (e.g., create a new thread or Future), the potential hang may still happen.
## How was this patch tested?
The new added test.
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#17761 from zsxwing/int.
## What changes were proposed in this pull request?
When application contains large amount of shuffle blocks. NodeManager requires lots of memory to keep metadata(`FileSegmentManagedBuffer`) in `StreamManager`. When the number of shuffle blocks is big enough. NodeManager can run OOM. This pr proposes to do lazy initialization of `FileSegmentManagedBuffer` in shuffle service.
## How was this patch tested?
Manually test.
Author: jinxing <jinxing6042@126.com>
Closes#17744 from jinxing64/SPARK-20426.
These listeners weren't really meant for external consumption, but they're
public and marked with DeveloperApi. Adding the deprecated tag warns people
that they may soon go away (as they will as part of the work for SPARK-18085).
Note that not all types made public by https://github.com/apache/spark/pull/648
are being deprecated. Some remaining types are still exposed through the
SparkListener API.
Also note the text for StorageStatus is a tiny bit different, since I'm not
so sure I'll be able to remove it. But the effect for the users should be the
same (they should stop trying to use it).
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#17766 from vanzin/SPARK-20421.
This change does a more thorough redaction of sensitive information from logs and UI
Add unit tests that ensure that no regressions happen that leak sensitive information to the logs.
The motivation for this change was appearance of password like so in `SparkListenerEnvironmentUpdate` in event logs under some JVM configurations:
`"sun.java.command":"org.apache.spark.deploy.SparkSubmit ... --conf spark.executorEnv.HADOOP_CREDSTORE_PASSWORD=secret_password ..."
`
Previously redaction logic was only checking if the key matched the secret regex pattern, it'd redact it's value. That worked for most cases. However, in the above case, the key (sun.java.command) doesn't tell much, so the value needs to be searched. This PR expands the check to check for values as well.
## How was this patch tested?
New unit tests added that ensure that no sensitive information is present in the event logs or the yarn logs. Old unit test in UtilsSuite was modified because the test was asserting that a non-sensitive property's value won't be redacted. However, the non-sensitive value had the literal "secret" in it which was causing it to redact. Simply updating the non-sensitive property's value to another arbitrary value (that didn't have "secret" in it) fixed it.
Author: Mark Grover <mark@apache.org>
Closes#17725 from markgrover/spark-20435.
## What changes were proposed in this pull request?
This is a follow-up of #14617 to make the name of memory related fields more meaningful.
Here for the backward compatibility, I didn't change `maxMemory` and `memoryUsed` fields.
## How was this patch tested?
Existing UT and local verification.
CC squito and tgravescs .
Author: jerryshao <sshao@hortonworks.com>
Closes#17700 from jerryshao/SPARK-20391.
## What changes were proposed in this pull request?
Pregel-based iterative algorithms with more than ~50 iterations begin to slow down and eventually fail with a StackOverflowError due to Spark's lack of support for long lineage chains.
This PR causes Pregel to checkpoint the graph periodically if the checkpoint directory is set.
This PR moves PeriodicGraphCheckpointer.scala from mllib to graphx, moves PeriodicRDDCheckpointer.scala, PeriodicCheckpointer.scala from mllib to core
## How was this patch tested?
unit tests, manual tests
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Author: ding <ding@localhost.localdomain>
Author: dding3 <ding.ding@intel.com>
Author: Michael Allman <michael@videoamp.com>
Closes#15125 from dding3/cp2_pregel.
Using Option(name) instead of Some(name) to prevent runtime failures when using accumulators created like the following
```
sparkContext.accumulator(0, null)
```
Author: Sergey Zhemzhitsky <szhemzhitski@gmail.com>
Closes#17740 from szhem/SPARK-20404-null-acc-names.
## What changes were proposed in this pull request?
Current SHS (Spark History Server) two different ACLs:
* ACL of base URL, it is controlled by "spark.acls.enabled" or "spark.ui.acls.enabled", and with this enabled, only user configured with "spark.admin.acls" (or group) or "spark.ui.view.acls" (or group), or the user who started SHS could list all the applications, otherwise none of them can be listed. This will also affect REST APIs which listing the summary of all apps and one app.
* Per application ACL. This is controlled by "spark.history.ui.acls.enabled". With this enabled only history admin user and user/group who ran this app can access the details of this app.
With this two ACLs, we may encounter several unexpected behaviors:
1. if base URL's ACL (`spark.acls.enable`) is enabled but user A has no view permission. User "A" cannot see the app list but could still access details of it's own app.
2. if ACLs of base URL (`spark.acls.enable`) is disabled, then user "A" could download any application's event log, even it is not run by user "A".
3. The changes of Live UI's ACL will affect History UI's ACL which share the same conf file.
The unexpected behaviors is mainly because we have two different ACLs, ideally we should have only one to manage all.
So to improve SHS's ACL mechanism, here in this PR proposed to:
1. Disable "spark.acls.enable" and only use "spark.history.ui.acls.enable" for history server.
2. Check permission for event-log download REST API.
With this PR:
1. Admin user could see/download the list of all applications, as well as application details.
2. Normal user could see the list of all applications, but can only download and check the details of applications accessible to him.
## How was this patch tested?
New UTs are added, also verified in real cluster.
CC tgravescs vanzin please help to review, this PR changes the semantics you did previously. Thanks a lot.
Author: jerryshao <sshao@hortonworks.com>
Closes#17582 from jerryshao/SPARK-20239.
## What changes were proposed in this pull request?
Submitted Time' field, the date format **needs to be formatted**, in running Drivers table or Completed Drivers table in master web ui.
Before fix this problem e.g.
Completed Drivers
Submission ID **Submitted Time** Worker State Cores Memory Main Class
driver-20170419145755-0005 **Wed Apr 19 14:57:55 CST 2017** worker-20170419145250-zdh120-40412 FAILED 1 1024.0 MB cn.zte.HdfsTest
please see the attachment:https://issues.apache.org/jira/secure/attachment/12863977/before_fix.png
After fix this problem e.g.
Completed Drivers
Submission ID **Submitted Time** Worker State Cores Memory Main Class
driver-20170419145755-0006 **2017/04/19 16:01:25** worker-20170419145250-zdh120-40412 FAILED 1 1024.0 MB cn.zte.HdfsTest
please see the attachment:https://issues.apache.org/jira/secure/attachment/12863976/after_fix.png
'Submitted Time' field, the date format **has been formatted**, in running Applications table or Completed Applicationstable in master web ui, **it is correct.**
e.g.
Running Applications
Application ID Name Cores Memory per Executor **Submitted Time** User State Duration
app-20170419160910-0000 (kill) SparkSQL::10.43.183.120 1 5.0 GB **2017/04/19 16:09:10** root RUNNING 53 s
**Format after the time easier to observe, and consistent with the applications table,so I think it's worth fixing.**
## How was this patch tested?
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>
Closes#17682 from guoxiaolongzte/SPARK-20385.
## What changes were proposed in this pull request?
Modify the added memory size to memSize-originalMemSize if the block exists on the slave already
since if the block exists, the added memory size should be memSize-originalMemSize; if originalMemSize is bigger than memSize ,then the log info should be Removed memory, removed size should be originalMemSize-memSize
## How was this patch tested?
Multiple runs on existing unit tests
(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)
(If this patch involves UI changes, please attach a screenshot; otherwise, remove this)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: eatoncys <chen.yanshan@zte.com.cn>
Closes#17683 from eatoncys/SPARK-20386.
## What changes were proposed in this pull request?
In the current Spark's HistoryServer we expected to get `AccessControlException` during listing all the files, but unfortunately it was not worked because we actually doesn't check the access permission and no other calls will throw such exception. What was worse is that this check will be deferred until reading files, which is not necessary and quite verbose, since it will be printed out the exception in every 10 seconds when checking the files.
So here with this fix, we actually check the read permission during listing the files, which could avoid unnecessary file read later on and suppress the verbose log.
## How was this patch tested?
Add unit test to verify.
Author: jerryshao <sshao@hortonworks.com>
Closes#17495 from jerryshao/SPARK-20172.
## What changes were proposed in this pull request?
This was a regression introduced by my earlier PR here: https://github.com/apache/spark/pull/17531
It turns out NonFatal() does not in fact catch InterruptedException.
## How was this patch tested?
Extended cancellation unit test coverage. The first test fails before this patch.
cc JoshRosen mridulm
Author: Eric Liang <ekl@databricks.com>
Closes#17659 from ericl/spark-20358.
## What changes were proposed in this pull request?
When I request access to the 'http: //ip:port/api/v1/applications' link, get the json. I need the 'sparkUser' field specific value, because my Spark big data management platform needs to filter through this field which user submits the application to facilitate my administration and query, but the current return of the json string is empty, causing me this Function can not be achieved, that is, I do not know who the specific application is submitted by this REST Api.
**current return json:**
[ {
"id" : "app-20170417152053-0000",
"name" : "KafkaWordCount",
"attempts" : [ {
"startTime" : "2017-04-17T07:20:51.395GMT",
"endTime" : "1969-12-31T23:59:59.999GMT",
"lastUpdated" : "2017-04-17T07:20:51.395GMT",
"duration" : 0,
**"sparkUser" : "",**
"completed" : false,
"endTimeEpoch" : -1,
"startTimeEpoch" : 1492413651395,
"lastUpdatedEpoch" : 1492413651395
} ]
} ]
**When I fix this question, return json:**
[ {
"id" : "app-20170417154201-0000",
"name" : "KafkaWordCount",
"attempts" : [ {
"startTime" : "2017-04-17T07:41:57.335GMT",
"endTime" : "1969-12-31T23:59:59.999GMT",
"lastUpdated" : "2017-04-17T07:41:57.335GMT",
"duration" : 0,
**"sparkUser" : "mr",**
"completed" : false,
"startTimeEpoch" : 1492414917335,
"endTimeEpoch" : -1,
"lastUpdatedEpoch" : 1492414917335
} ]
} ]
## How was this patch tested?
manual tests
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: 郭小龙 10207633 <guo.xiaolong1@zte.com.cn>
Author: guoxiaolong <guo.xiaolong1@zte.com.cn>
Author: guoxiaolongzte <guo.xiaolong1@zte.com.cn>
Closes#17656 from guoxiaolongzte/SPARK-20354.
## What changes were proposed in this pull request?
Eliminate the duplicate call to `Pool.getSchedulableByName()` in `FairSchedulableBuilder.addTaskSetManager`
## How was this patch tested?
./dev/run-tests
Author: Robert Stupp <snazy@snazy.de>
Closes#17647 from snazy/20344-dup-call-master.
## What changes were proposed in this pull request?
This PR proposes to add
```
<dependency>
<groupId>org.apache.avro</groupId>
<artifactId>avro</artifactId>
</dependency>
```
in core POM to see if it resolves the build failure as below:
```
[error] /home/jenkins/workspace/spark-master-test-sbt-hadoop-2.6/core/src/main/scala/org/apache/spark/serializer/GenericAvroSerializer.scala:123: value createDatumWriter is not a member of org.apache.avro.generic.GenericData
[error] writerCache.getOrElseUpdate(schema, GenericData.get.createDatumWriter(schema))
[error]
```
https://amplab.cs.berkeley.edu/jenkins/view/Spark%20QA%20Test%20(Dashboard)/job/spark-master-test-sbt-hadoop-2.6/2770/consoleFull
## How was this patch tested?
I tried many ways but I was unable to reproduce this in my local. Sean also tried the way I did but he was also unable to reproduce this.
Please refer the comments in https://github.com/apache/spark/pull/17477#issuecomment-294094092
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#17642 from HyukjinKwon/SPARK-20343.
## What changes were proposed in this pull request?
This PR allows to use `SerializationStream` and `DeserializationStream` in try-with-resources.
## How was this patch tested?
`core` unit tests.
Author: Sergei Lebedev <s.lebedev@criteo.com>
Closes#17598 from superbobry/compression-stream-closeable.
## What changes were proposed in this pull request?
`o.a.s.streaming.StreamingContextSuite.SPARK-18560 Receiver data should be deserialized properly` is flaky is because there is a potential dead-lock in StandaloneSchedulerBackend which causes `await` timeout. Here is the related stack trace:
```
"Thread-31" #211 daemon prio=5 os_prio=31 tid=0x00007fedd4808000 nid=0x16403 waiting on condition [0x00007000239b7000]
java.lang.Thread.State: TIMED_WAITING (parking)
at sun.misc.Unsafe.park(Native Method)
- parking to wait for <0x000000079b49ca10> (a scala.concurrent.impl.Promise$CompletionLatch)
at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:215)
at java.util.concurrent.locks.AbstractQueuedSynchronizer.doAcquireSharedNanos(AbstractQueuedSynchronizer.java:1037)
at java.util.concurrent.locks.AbstractQueuedSynchronizer.tryAcquireSharedNanos(AbstractQueuedSynchronizer.java:1328)
at scala.concurrent.impl.Promise$DefaultPromise.tryAwait(Promise.scala:208)
at scala.concurrent.impl.Promise$DefaultPromise.ready(Promise.scala:218)
at scala.concurrent.impl.Promise$DefaultPromise.result(Promise.scala:223)
at org.apache.spark.util.ThreadUtils$.awaitResult(ThreadUtils.scala:201)
at org.apache.spark.rpc.RpcTimeout.awaitResult(RpcTimeout.scala:75)
at org.apache.spark.rpc.RpcEndpointRef.askSync(RpcEndpointRef.scala:92)
at org.apache.spark.rpc.RpcEndpointRef.askSync(RpcEndpointRef.scala:76)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend.stop(CoarseGrainedSchedulerBackend.scala:402)
at org.apache.spark.scheduler.cluster.StandaloneSchedulerBackend.org$apache$spark$scheduler$cluster$StandaloneSchedulerBackend$$stop(StandaloneSchedulerBackend.scala:213)
- locked <0x00000007066fca38> (a org.apache.spark.scheduler.cluster.StandaloneSchedulerBackend)
at org.apache.spark.scheduler.cluster.StandaloneSchedulerBackend.stop(StandaloneSchedulerBackend.scala:116)
- locked <0x00000007066fca38> (a org.apache.spark.scheduler.cluster.StandaloneSchedulerBackend)
at org.apache.spark.scheduler.TaskSchedulerImpl.stop(TaskSchedulerImpl.scala:517)
at org.apache.spark.scheduler.DAGScheduler.stop(DAGScheduler.scala:1657)
at org.apache.spark.SparkContext$$anonfun$stop$8.apply$mcV$sp(SparkContext.scala:1921)
at org.apache.spark.util.Utils$.tryLogNonFatalError(Utils.scala:1302)
at org.apache.spark.SparkContext.stop(SparkContext.scala:1920)
at org.apache.spark.streaming.StreamingContext.stop(StreamingContext.scala:708)
at org.apache.spark.streaming.StreamingContextSuite$$anonfun$43$$anonfun$apply$mcV$sp$66$$anon$3.run(StreamingContextSuite.scala:827)
"dispatcher-event-loop-3" #18 daemon prio=5 os_prio=31 tid=0x00007fedd603a000 nid=0x6203 waiting for monitor entry [0x0000700003be4000]
java.lang.Thread.State: BLOCKED (on object monitor)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverEndpoint.org$apache$spark$scheduler$cluster$CoarseGrainedSchedulerBackend$DriverEndpoint$$makeOffers(CoarseGrainedSchedulerBackend.scala:253)
- waiting to lock <0x00000007066fca38> (a org.apache.spark.scheduler.cluster.StandaloneSchedulerBackend)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverEndpoint$$anonfun$receive$1.applyOrElse(CoarseGrainedSchedulerBackend.scala:124)
at org.apache.spark.rpc.netty.Inbox$$anonfun$process$1.apply$mcV$sp(Inbox.scala:117)
at org.apache.spark.rpc.netty.Inbox.safelyCall(Inbox.scala:205)
at org.apache.spark.rpc.netty.Inbox.process(Inbox.scala:101)
at org.apache.spark.rpc.netty.Dispatcher$MessageLoop.run(Dispatcher.scala:213)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
```
This PR removes `synchronized` and changes `stopping` to AtomicBoolean to ensure idempotent to fix the dead-lock.
## How was this patch tested?
Jenkins
Author: Shixiong Zhu <shixiong@databricks.com>
Closes#17610 from zsxwing/SPARK-20131.
## What changes were proposed in this pull request?
This PR proposes to run Spark unidoc to test Javadoc 8 build as Javadoc 8 is easily re-breakable.
There are several problems with it:
- It introduces little extra bit of time to run the tests. In my case, it took 1.5 mins more (`Elapsed :[94.8746569157]`). How it was tested is described in "How was this patch tested?".
- > One problem that I noticed was that Unidoc appeared to be processing test sources: if we can find a way to exclude those from being processed in the first place then that might significantly speed things up.
(see joshrosen's [comment](https://issues.apache.org/jira/browse/SPARK-18692?focusedCommentId=15947627&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-15947627))
To complete this automated build, It also suggests to fix existing Javadoc breaks / ones introduced by test codes as described above.
There fixes are similar instances that previously fixed. Please refer https://github.com/apache/spark/pull/15999 and https://github.com/apache/spark/pull/16013
Note that this only fixes **errors** not **warnings**. Please see my observation https://github.com/apache/spark/pull/17389#issuecomment-288438704 for spurious errors by warnings.
## How was this patch tested?
Manually via `jekyll build` for building tests. Also, tested via running `./dev/run-tests`.
This was tested via manually adding `time.time()` as below:
```diff
profiles_and_goals = build_profiles + sbt_goals
print("[info] Building Spark unidoc (w/Hive 1.2.1) using SBT with these arguments: ",
" ".join(profiles_and_goals))
+ import time
+ st = time.time()
exec_sbt(profiles_and_goals)
+ print("Elapsed :[%s]" % str(time.time() - st))
```
produces
```
...
========================================================================
Building Unidoc API Documentation
========================================================================
...
[info] Main Java API documentation successful.
...
Elapsed :[94.8746569157]
...
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#17477 from HyukjinKwon/SPARK-18692.
## What changes were proposed in this pull request?
Add Locale.ROOT to internal calls to String `toLowerCase`, `toUpperCase`, to avoid inadvertent locale-sensitive variation in behavior (aka the "Turkish locale problem").
The change looks large but it is just adding `Locale.ROOT` (the locale with no country or language specified) to every call to these methods.
## How was this patch tested?
Existing tests.
Author: Sean Owen <sowen@cloudera.com>
Closes#17527 from srowen/SPARK-20156.
## What changes were proposed in this pull request?
Synchronize access to openStreams map.
## How was this patch tested?
Existing tests.
Author: Bogdan Raducanu <bogdan@databricks.com>
Closes#17592 from bogdanrdc/SPARK-20243.
## What changes were proposed in this pull request?
This error message doesn't get properly formatted because of a missing `s`. Currently the error looks like:
```
Caused by: java.lang.IllegalArgumentException: requirement failed: indices should be one-based and in ascending order; found current=$current, previous=$previous; line="$line"
```
(note the literal `$current` instead of the interpolated value)
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: Vijay Ramesh <vramesh@demandbase.com>
Closes#17572 from vijaykramesh/master.
