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639 commits

Author SHA1 Message Date
hyukjinkwon d6632d185e [SPARK-23380][PYTHON] Adds a conf for Arrow fallback in toPandas/createDataFrame with Pandas DataFrame
## What changes were proposed in this pull request?

This PR adds a configuration to control the fallback of Arrow optimization for `toPandas` and `createDataFrame` with Pandas DataFrame.

## How was this patch tested?

Manually tested and unit tests added.

You can test this by:

**`createDataFrame`**

```python
spark.conf.set("spark.sql.execution.arrow.enabled", False)
pdf = spark.createDataFrame([[{'a': 1}]]).toPandas()
spark.conf.set("spark.sql.execution.arrow.enabled", True)
spark.conf.set("spark.sql.execution.arrow.fallback.enabled", True)
spark.createDataFrame(pdf, "a: map<string, int>")
```

```python
spark.conf.set("spark.sql.execution.arrow.enabled", False)
pdf = spark.createDataFrame([[{'a': 1}]]).toPandas()
spark.conf.set("spark.sql.execution.arrow.enabled", True)
spark.conf.set("spark.sql.execution.arrow.fallback.enabled", False)
spark.createDataFrame(pdf, "a: map<string, int>")
```

**`toPandas`**

```python
spark.conf.set("spark.sql.execution.arrow.enabled", True)
spark.conf.set("spark.sql.execution.arrow.fallback.enabled", True)
spark.createDataFrame([[{'a': 1}]]).toPandas()
```

```python
spark.conf.set("spark.sql.execution.arrow.enabled", True)
spark.conf.set("spark.sql.execution.arrow.fallback.enabled", False)
spark.createDataFrame([[{'a': 1}]]).toPandas()
```

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20678 from HyukjinKwon/SPARK-23380-conf.
2018-03-08 20:22:07 +09:00
Mihaly Toth a366b950b9 [SPARK-23329][SQL] Fix documentation of trigonometric functions
## What changes were proposed in this pull request?

Provide more details in trigonometric function documentations. Referenced `java.lang.Math` for further details in the descriptions.
## How was this patch tested?

Ran full build, checked generated documentation manually

Author: Mihaly Toth <misutoth@gmail.com>

Closes #20618 from misutoth/trigonometric-doc.
2018-03-05 23:46:40 +09:00
Anirudh 5ff72ffcf4 [SPARK-23566][MINOR][DOC] Argument name mismatch fixed
Argument name mismatch fixed.

## What changes were proposed in this pull request?

`col` changed to `new` in doc string to match the argument list.

Patch file added: https://issues.apache.org/jira/browse/SPARK-23566

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: Anirudh <animenon@mail.com>

Closes #20716 from animenon/master.
2018-03-05 23:17:16 +09:00
Michael (Stu) Stewart 7965c91d8a [SPARK-23569][PYTHON] Allow pandas_udf to work with python3 style type-annotated functions
## What changes were proposed in this pull request?

Check python version to determine whether to use `inspect.getargspec` or `inspect.getfullargspec` before applying `pandas_udf` core logic to a function. The former is python2.7 (deprecated in python3) and the latter is python3.x. The latter correctly accounts for type annotations, which are syntax errors in python2.x.

## How was this patch tested?

Locally, on python 2.7 and 3.6.

Author: Michael (Stu) Stewart <mstewart141@gmail.com>

Closes #20728 from mstewart141/pandas_udf_fix.
2018-03-05 13:36:42 +09:00
Liang-Chi Hsieh b14993e1fc [SPARK-23448][SQL] Clarify JSON and CSV parser behavior in document
## What changes were proposed in this pull request?

Clarify JSON and CSV reader behavior in document.

JSON doesn't support partial results for corrupted records.
CSV only supports partial results for the records with more or less tokens.

## How was this patch tested?

Pass existing tests.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #20666 from viirya/SPARK-23448-2.
2018-02-28 11:00:54 +09:00
hyukjinkwon c5857e496f [SPARK-23446][PYTHON] Explicitly check supported types in toPandas
## What changes were proposed in this pull request?

This PR explicitly specifies and checks the types we supported in `toPandas`. This was a hole. For example, we haven't finished the binary type support in Python side yet but now it allows as below:

```python
spark.conf.set("spark.sql.execution.arrow.enabled", "false")
df = spark.createDataFrame([[bytearray("a")]])
df.toPandas()
spark.conf.set("spark.sql.execution.arrow.enabled", "true")
df.toPandas()
```

```
     _1
0  [97]
  _1
0  a
```

This should be disallowed. I think the same things also apply to nested timestamps too.

I also added some nicer message about `spark.sql.execution.arrow.enabled` in the error message.

## How was this patch tested?

Manually tested and tests added in `python/pyspark/sql/tests.py`.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20625 from HyukjinKwon/pandas_convertion_supported_type.
2018-02-16 09:41:17 -08:00
gatorsmile 407f672496 [SPARK-20090][FOLLOW-UP] Revert the deprecation of names in PySpark
## What changes were proposed in this pull request?
Deprecating the field `name` in PySpark is not expected. This PR is to revert the change.

## How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #20595 from gatorsmile/removeDeprecate.
2018-02-13 15:05:13 +09:00
hyukjinkwon c338c8cf82 [SPARK-23352][PYTHON] Explicitly specify supported types in Pandas UDFs
## What changes were proposed in this pull request?

This PR targets to explicitly specify supported types in Pandas UDFs.
The main change here is to add a deduplicated and explicit type checking in `returnType` ahead with documenting this; however, it happened to fix multiple things.

1. Currently, we don't support `BinaryType` in Pandas UDFs, for example, see:

    ```python
    from pyspark.sql.functions import pandas_udf
    pudf = pandas_udf(lambda x: x, "binary")
    df = spark.createDataFrame([[bytearray(1)]])
    df.select(pudf("_1")).show()
    ```
    ```
    ...
    TypeError: Unsupported type in conversion to Arrow: BinaryType
    ```

    We can document this behaviour for its guide.

2. Also, the grouped aggregate Pandas UDF fails fast on `ArrayType` but seems we can support this case.

    ```python
    from pyspark.sql.functions import pandas_udf, PandasUDFType
    foo = pandas_udf(lambda v: v.mean(), 'array<double>', PandasUDFType.GROUPED_AGG)
    df = spark.range(100).selectExpr("id", "array(id) as value")
    df.groupBy("id").agg(foo("value")).show()
    ```

    ```
    ...
     NotImplementedError: ArrayType, StructType and MapType are not supported with PandasUDFType.GROUPED_AGG
    ```

3. Since we can check the return type ahead, we can fail fast before actual execution.

    ```python
    # we can fail fast at this stage because we know the schema ahead
    pandas_udf(lambda x: x, BinaryType())
    ```

## How was this patch tested?

Manually tested and unit tests for `BinaryType` and `ArrayType(...)` were added.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20531 from HyukjinKwon/pudf-cleanup.
2018-02-12 20:49:36 +09:00
xubo245 eacb62fbbe [SPARK-22624][PYSPARK] Expose range partitioning shuffle introduced by spark-22614
## What changes were proposed in this pull request?

 Expose range partitioning shuffle introduced by spark-22614

## How was this patch tested?

Unit test in dataframe.py

Please review http://spark.apache.org/contributing.html before opening a pull request.

Author: xubo245 <601450868@qq.com>

Closes #20456 from xubo245/SPARK22624_PysparkRangePartition.
2018-02-11 19:23:15 +09:00
Huaxin Gao 8acb51f08b [SPARK-23084][PYTHON] Add unboundedPreceding(), unboundedFollowing() and currentRow() to PySpark
## What changes were proposed in this pull request?

Added unboundedPreceding(), unboundedFollowing() and currentRow() to PySpark, also updated the rangeBetween API

## How was this patch tested?

did unit test on my local. Please let me know if I need to add unit test in tests.py

Author: Huaxin Gao <huaxing@us.ibm.com>

Closes #20400 from huaxingao/spark_23084.
2018-02-11 18:55:38 +09:00
Li Jin a34fce19bc [SPARK-23314][PYTHON] Add ambiguous=False when localizing tz-naive timestamps in Arrow codepath to deal with dst
## What changes were proposed in this pull request?
When tz_localize a tz-naive timetamp, pandas will throw exception if the timestamp is during daylight saving time period, e.g., `2015-11-01 01:30:00`. This PR fixes this issue by setting `ambiguous=False` when calling tz_localize, which is the same default behavior of pytz.

## How was this patch tested?
Add `test_timestamp_dst`

Author: Li Jin <ice.xelloss@gmail.com>

Closes #20537 from icexelloss/SPARK-23314.
2018-02-11 17:31:35 +09:00
Takuya UESHIN 97a224a855 [SPARK-23360][SQL][PYTHON] Get local timezone from environment via pytz, or dateutil.
## What changes were proposed in this pull request?

Currently we use `tzlocal()` to get Python local timezone, but it sometimes causes unexpected behavior.
I changed the way to get Python local timezone to use pytz if the timezone is specified in environment variable, or timezone file via dateutil .

## How was this patch tested?

Added a test and existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20559 from ueshin/issues/SPARK-23360/master.
2018-02-11 01:08:02 +09:00
hyukjinkwon 4b4ee26010 [SPARK-23328][PYTHON] Disallow default value None in na.replace/replace when 'to_replace' is not a dictionary
## What changes were proposed in this pull request?

This PR proposes to disallow default value None when 'to_replace' is not a dictionary.

It seems weird we set the default value of `value` to `None` and we ended up allowing the case as below:

```python
>>> df.show()
```
```
+----+------+-----+
| age|height| name|
+----+------+-----+
|  10|    80|Alice|
...
```

```python
>>> df.na.replace('Alice').show()
```
```
+----+------+----+
| age|height|name|
+----+------+----+
|  10|    80|null|
...
```

**After**

This PR targets to disallow the case above:

```python
>>> df.na.replace('Alice').show()
```
```
...
TypeError: value is required when to_replace is not a dictionary.
```

while we still allow when `to_replace` is a dictionary:

```python
>>> df.na.replace({'Alice': None}).show()
```
```
+----+------+----+
| age|height|name|
+----+------+----+
|  10|    80|null|
...
```

## How was this patch tested?

Manually tested, tests were added in `python/pyspark/sql/tests.py` and doctests were fixed.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20499 from HyukjinKwon/SPARK-19454-followup.
2018-02-09 14:21:10 +08:00
Takuya UESHIN a62f30d3fa [SPARK-23319][TESTS][FOLLOWUP] Fix a test for Python 3 without pandas.
## What changes were proposed in this pull request?

This is a followup pr of #20487.

When importing module but it doesn't exists, the error message is slightly different between Python 2 and 3.

E.g., in Python 2:

```
No module named pandas
```

in Python 3:

```
No module named 'pandas'
```

So, one test to check an import error fails in Python 3 without pandas.

This pr fixes it.

## How was this patch tested?

Tested manually in my local environment.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20538 from ueshin/issues/SPARK-23319/fup1.
2018-02-08 12:46:10 +09:00
hyukjinkwon 71cfba04ae [SPARK-23319][TESTS] Explicitly specify Pandas and PyArrow versions in PySpark tests (to skip or test)
## What changes were proposed in this pull request?

This PR proposes to explicitly specify Pandas and PyArrow versions in PySpark tests to skip or test.

We declared the extra dependencies:

b8bfce51ab/python/setup.py (L204)

In case of PyArrow:

Currently we only check if pyarrow is installed or not without checking the version. It already fails to run tests. For example, if PyArrow 0.7.0 is installed:

```
======================================================================
ERROR: test_vectorized_udf_wrong_return_type (pyspark.sql.tests.ScalarPandasUDF)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/.../spark/python/pyspark/sql/tests.py", line 4019, in test_vectorized_udf_wrong_return_type
    f = pandas_udf(lambda x: x * 1.0, MapType(LongType(), LongType()))
  File "/.../spark/python/pyspark/sql/functions.py", line 2309, in pandas_udf
    return _create_udf(f=f, returnType=return_type, evalType=eval_type)
  File "/.../spark/python/pyspark/sql/udf.py", line 47, in _create_udf
    require_minimum_pyarrow_version()
  File "/.../spark/python/pyspark/sql/utils.py", line 132, in require_minimum_pyarrow_version
    "however, your version was %s." % pyarrow.__version__)
ImportError: pyarrow >= 0.8.0 must be installed on calling Python process; however, your version was 0.7.0.

----------------------------------------------------------------------
Ran 33 tests in 8.098s

FAILED (errors=33)
```

In case of Pandas:

There are few tests for old Pandas which were tested only when Pandas version was lower, and I rewrote them to be tested when both Pandas version is lower and missing.

## How was this patch tested?

Manually tested by modifying the condition:

```
test_createDataFrame_column_name_encoding (pyspark.sql.tests.ArrowTests) ... skipped 'Pandas >= 1.19.2 must be installed; however, your version was 0.19.2.'
test_createDataFrame_does_not_modify_input (pyspark.sql.tests.ArrowTests) ... skipped 'Pandas >= 1.19.2 must be installed; however, your version was 0.19.2.'
test_createDataFrame_respect_session_timezone (pyspark.sql.tests.ArrowTests) ... skipped 'Pandas >= 1.19.2 must be installed; however, your version was 0.19.2.'
```

```
test_createDataFrame_column_name_encoding (pyspark.sql.tests.ArrowTests) ... skipped 'Pandas >= 0.19.2 must be installed; however, it was not found.'
test_createDataFrame_does_not_modify_input (pyspark.sql.tests.ArrowTests) ... skipped 'Pandas >= 0.19.2 must be installed; however, it was not found.'
test_createDataFrame_respect_session_timezone (pyspark.sql.tests.ArrowTests) ... skipped 'Pandas >= 0.19.2 must be installed; however, it was not found.'
```

```
test_createDataFrame_column_name_encoding (pyspark.sql.tests.ArrowTests) ... skipped 'PyArrow >= 1.8.0 must be installed; however, your version was 0.8.0.'
test_createDataFrame_does_not_modify_input (pyspark.sql.tests.ArrowTests) ... skipped 'PyArrow >= 1.8.0 must be installed; however, your version was 0.8.0.'
test_createDataFrame_respect_session_timezone (pyspark.sql.tests.ArrowTests) ... skipped 'PyArrow >= 1.8.0 must be installed; however, your version was 0.8.0.'
```

```
test_createDataFrame_column_name_encoding (pyspark.sql.tests.ArrowTests) ... skipped 'PyArrow >= 0.8.0 must be installed; however, it was not found.'
test_createDataFrame_does_not_modify_input (pyspark.sql.tests.ArrowTests) ... skipped 'PyArrow >= 0.8.0 must be installed; however, it was not found.'
test_createDataFrame_respect_session_timezone (pyspark.sql.tests.ArrowTests) ... skipped 'PyArrow >= 0.8.0 must be installed; however, it was not found.'
```

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20487 from HyukjinKwon/pyarrow-pandas-skip.
2018-02-07 23:28:10 +09:00
gatorsmile 9775df67f9 [SPARK-23122][PYSPARK][FOLLOWUP] Replace registerTempTable by createOrReplaceTempView
## What changes were proposed in this pull request?
Replace `registerTempTable` by `createOrReplaceTempView`.

## How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #20523 from gatorsmile/updateExamples.
2018-02-07 23:24:16 +09:00
gatorsmile c36fecc3b4 [SPARK-23327][SQL] Update the description and tests of three external API or functions
## What changes were proposed in this pull request?
Update the description and tests of three external API or functions `createFunction `, `length` and `repartitionByRange `

## How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #20495 from gatorsmile/updateFunc.
2018-02-06 16:46:43 -08:00
Li Jin caf3044563 [MINOR][TEST] Fix class name for Pandas UDF tests
## What changes were proposed in this pull request?

In b2ce17b4c9, I mistakenly renamed `VectorizedUDFTests` to `ScalarPandasUDF`. This PR fixes the mistake.

## How was this patch tested?

Existing tests.

Author: Li Jin <ice.xelloss@gmail.com>

Closes #20489 from icexelloss/fix-scalar-udf-tests.
2018-02-06 12:30:04 -08:00
Takuya UESHIN 63c5bf13ce [SPARK-23334][SQL][PYTHON] Fix pandas_udf with return type StringType() to handle str type properly in Python 2.
## What changes were proposed in this pull request?

In Python 2, when `pandas_udf` tries to return string type value created in the udf with `".."`, the execution fails. E.g.,

```python
from pyspark.sql.functions import pandas_udf, col
import pandas as pd

df = spark.range(10)
str_f = pandas_udf(lambda x: pd.Series(["%s" % i for i in x]), "string")
df.select(str_f(col('id'))).show()
```

raises the following exception:

```
...

java.lang.AssertionError: assertion failed: Invalid schema from pandas_udf: expected StringType, got BinaryType
	at scala.Predef$.assert(Predef.scala:170)
	at org.apache.spark.sql.execution.python.ArrowEvalPythonExec$$anon$2.<init>(ArrowEvalPythonExec.scala:93)

...
```

Seems like pyarrow ignores `type` parameter for `pa.Array.from_pandas()` and consider it as binary type when the type is string type and the string values are `str` instead of `unicode` in Python 2.

This pr adds a workaround for the case.

## How was this patch tested?

Added a test and existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20507 from ueshin/issues/SPARK-23334.
2018-02-06 18:30:50 +09:00
Takuya UESHIN a24c03138a [SPARK-23290][SQL][PYTHON] Use datetime.date for date type when converting Spark DataFrame to Pandas DataFrame.
## What changes were proposed in this pull request?

In #18664, there was a change in how `DateType` is being returned to users ([line 1968 in dataframe.py](https://github.com/apache/spark/pull/18664/files#diff-6fc344560230bf0ef711bb9b5573f1faR1968)). This can cause client code which works in Spark 2.2 to fail.
See [SPARK-23290](https://issues.apache.org/jira/browse/SPARK-23290?focusedCommentId=16350917&page=com.atlassian.jira.plugin.system.issuetabpanels%3Acomment-tabpanel#comment-16350917) for an example.

This pr modifies to use `datetime.date` for date type as Spark 2.2 does.

## How was this patch tested?

Tests modified to fit the new behavior and existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20506 from ueshin/issues/SPARK-23290.
2018-02-06 14:52:25 +08:00
hyukjinkwon 551dff2bcc [SPARK-21658][SQL][PYSPARK] Revert "[] Add default None for value in na.replace in PySpark"
This reverts commit 0fcde87aad.

See the discussion in [SPARK-21658](https://issues.apache.org/jira/browse/SPARK-21658),  [SPARK-19454](https://issues.apache.org/jira/browse/SPARK-19454) and https://github.com/apache/spark/pull/16793

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20496 from HyukjinKwon/revert-SPARK-21658.
2018-02-03 10:40:21 -08:00
Takuya UESHIN 07cee33736 [SPARK-22274][PYTHON][SQL][FOLLOWUP] Use assertRaisesRegexp instead of assertRaisesRegex.
## What changes were proposed in this pull request?

This is a follow-up pr of #19872 which uses `assertRaisesRegex` but it doesn't exist in Python 2, so some tests fail when running tests in Python 2 environment.
Unfortunately, we missed it because currently Python 2 environment of the pr builder doesn't have proper versions of pandas or pyarrow, so the tests were skipped.

This pr modifies to use `assertRaisesRegexp` instead of `assertRaisesRegex`.

## How was this patch tested?

Tested manually in my local environment.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20467 from ueshin/issues/SPARK-22274/fup1.
2018-01-31 22:26:27 -08:00
Henry Robinson f470df2fcf [SPARK-23157][SQL][FOLLOW-UP] DataFrame -> SparkDataFrame in R comment
Author: Henry Robinson <henry@cloudera.com>

Closes #20443 from henryr/SPARK-23157.
2018-02-01 11:15:17 +09:00
jerryshao 3d0911bbe4 [SPARK-23228][PYSPARK] Add Python Created jsparkSession to JVM's defaultSession
## What changes were proposed in this pull request?

In the current PySpark code, Python created `jsparkSession` doesn't add to JVM's defaultSession, this `SparkSession` object cannot be fetched from Java side, so the below scala code will be failed when loaded in PySpark application.

```scala
class TestSparkSession extends SparkListener with Logging {
  override def onOtherEvent(event: SparkListenerEvent): Unit = {
    event match {
      case CreateTableEvent(db, table) =>
        val session = SparkSession.getActiveSession.orElse(SparkSession.getDefaultSession)
        assert(session.isDefined)
        val tableInfo = session.get.sharedState.externalCatalog.getTable(db, table)
        logInfo(s"Table info ${tableInfo}")

      case e =>
        logInfo(s"event $e")

    }
  }
}
```

So here propose to add fresh create `jsparkSession` to `defaultSession`.

## How was this patch tested?

Manual verification.

Author: jerryshao <sshao@hortonworks.com>
Author: hyukjinkwon <gurwls223@gmail.com>
Author: Saisai Shao <sai.sai.shao@gmail.com>

Closes #20404 from jerryshao/SPARK-23228.
2018-01-31 20:04:51 +09:00
gatorsmile 7a2ada223e [SPARK-23261][PYSPARK] Rename Pandas UDFs
## What changes were proposed in this pull request?
Rename the public APIs and names of pandas udfs.

- `PANDAS SCALAR UDF` -> `SCALAR PANDAS UDF`
- `PANDAS GROUP MAP UDF` -> `GROUPED MAP PANDAS UDF`
- `PANDAS GROUP AGG UDF` -> `GROUPED AGG PANDAS UDF`

## How was this patch tested?
The existing tests

Author: gatorsmile <gatorsmile@gmail.com>

Closes #20428 from gatorsmile/renamePandasUDFs.
2018-01-30 21:55:55 +09:00
Henry Robinson 8b983243e4 [SPARK-23157][SQL] Explain restriction on column expression in withColumn()
## What changes were proposed in this pull request?

It's not obvious from the comments that any added column must be a
function of the dataset that we are adding it to. Add a comment to
that effect to Scala, Python and R Data* methods.

Author: Henry Robinson <henry@cloudera.com>

Closes #20429 from henryr/SPARK-23157.
2018-01-29 22:19:59 -08:00
hyukjinkwon 3227d14feb [SPARK-23233][PYTHON] Reset the cache in asNondeterministic to set deterministic properly
## What changes were proposed in this pull request?

Reproducer:

```python
from pyspark.sql.functions import udf
f = udf(lambda x: x)
spark.range(1).select(f("id"))  # cache JVM UDF instance.
f = f.asNondeterministic()
spark.range(1).select(f("id"))._jdf.logicalPlan().projectList().head().deterministic()
```

It should return `False` but the current master returns `True`. Seems it's because we cache the JVM UDF instance and then we reuse it even after setting `deterministic` disabled once it's called.

## How was this patch tested?

Manually tested. I am not sure if I should add the test with a lot of JVM accesses with the intetnal stuff .. Let me know if anyone feels so. I will add.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20409 from HyukjinKwon/SPARK-23233.
2018-01-27 11:26:09 -08:00
Huaxin Gao 8480c0c576 [SPARK-23081][PYTHON] Add colRegex API to PySpark
## What changes were proposed in this pull request?

Add colRegex API to PySpark

## How was this patch tested?

add a test in sql/tests.py

Author: Huaxin Gao <huaxing@us.ibm.com>

Closes #20390 from huaxingao/spark-23081.
2018-01-26 07:50:48 +09:00
Liang-Chi Hsieh a3911cf896 [SPARK-23177][SQL][PYSPARK] Extract zero-parameter UDFs from aggregate
## What changes were proposed in this pull request?

We extract Python UDFs in logical aggregate which depends on aggregate expression or grouping key in ExtractPythonUDFFromAggregate rule. But Python UDFs which don't depend on above expressions should also be extracted to avoid the issue reported in the JIRA.

A small code snippet to reproduce that issue looks like:
```python
import pyspark.sql.functions as f

df = spark.createDataFrame([(1,2), (3,4)])
f_udf = f.udf(lambda: str("const_str"))
df2 = df.distinct().withColumn("a", f_udf())
df2.show()
```

Error exception is raised as:
```
: org.apache.spark.sql.catalyst.errors.package$TreeNodeException: Binding attribute, tree: pythonUDF0#50
        at org.apache.spark.sql.catalyst.errors.package$.attachTree(package.scala:56)
        at org.apache.spark.sql.catalyst.expressions.BindReferences$$anonfun$bindReference$1.applyOrElse(BoundAttribute.scala:91)
        at org.apache.spark.sql.catalyst.expressions.BindReferences$$anonfun$bindReference$1.applyOrElse(BoundAttribute.scala:90)
        at org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$2.apply(TreeNode.scala:267)
        at org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$2.apply(TreeNode.scala:267)
        at org.apache.spark.sql.catalyst.trees.CurrentOrigin$.withOrigin(TreeNode.scala:70)
        at org.apache.spark.sql.catalyst.trees.TreeNode.transformDown(TreeNode.scala:266)
        at org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$transformDown$1.apply(TreeNode.scala:272)
        at org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$transformDown$1.apply(TreeNode.scala:272)
        at org.apache.spark.sql.catalyst.trees.TreeNode$$anonfun$4.apply(TreeNode.scala:306)
        at org.apache.spark.sql.catalyst.trees.TreeNode.mapProductIterator(TreeNode.scala:187)
        at org.apache.spark.sql.catalyst.trees.TreeNode.mapChildren(TreeNode.scala:304)
        at org.apache.spark.sql.catalyst.trees.TreeNode.transformDown(TreeNode.scala:272)
        at org.apache.spark.sql.catalyst.trees.TreeNode.transform(TreeNode.scala:256)
        at org.apache.spark.sql.catalyst.expressions.BindReferences$.bindReference(BoundAttribute.scala:90)
        at org.apache.spark.sql.execution.aggregate.HashAggregateExec$$anonfun$38.apply(HashAggregateExec.scala:514)
        at org.apache.spark.sql.execution.aggregate.HashAggregateExec$$anonfun$38.apply(HashAggregateExec.scala:513)
```

This exception raises because `HashAggregateExec` tries to bind the aliased Python UDF expression (e.g., `pythonUDF0#50 AS a#44`) to grouping key.

## How was this patch tested?

Added test.

Author: Liang-Chi Hsieh <viirya@gmail.com>

Closes #20360 from viirya/SPARK-23177.
2018-01-24 11:43:48 +09:00
Li Jin b2ce17b4c9 [SPARK-22274][PYTHON][SQL] User-defined aggregation functions with pandas udf (full shuffle)
## What changes were proposed in this pull request?

Add support for using pandas UDFs with groupby().agg().

This PR introduces a new type of pandas UDF - group aggregate pandas UDF. This type of UDF defines a transformation of multiple pandas Series -> a scalar value. Group aggregate pandas UDFs can be used with groupby().agg(). Note group aggregate pandas UDF doesn't support partial aggregation, i.e., a full shuffle is required.

This PR doesn't support group aggregate pandas UDFs that return ArrayType, StructType or MapType. Support for these types is left for future PR.

## How was this patch tested?

GroupbyAggPandasUDFTests

Author: Li Jin <ice.xelloss@gmail.com>

Closes #19872 from icexelloss/SPARK-22274-groupby-agg.
2018-01-23 14:11:30 +09:00
gatorsmile 73281161fc [SPARK-23122][PYSPARK][FOLLOW-UP] Update the docs for UDF Registration
## What changes were proposed in this pull request?

This PR is to update the docs for UDF registration

## How was this patch tested?

N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #20348 from gatorsmile/testUpdateDoc.
2018-01-22 04:27:59 -08:00
Takuya UESHIN 568055da93 [SPARK-23054][SQL][PYSPARK][FOLLOWUP] Use sqlType casting when casting PythonUserDefinedType to String.
## What changes were proposed in this pull request?

This is a follow-up of #20246.

If a UDT in Python doesn't have its corresponding Scala UDT, cast to string will be the raw string of the internal value, e.g. `"org.apache.spark.sql.catalyst.expressions.UnsafeArrayDataxxxxxxxx"` if the internal type is `ArrayType`.

This pr fixes it by using its `sqlType` casting.

## How was this patch tested?

Added a test and existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20306 from ueshin/issues/SPARK-23054/fup1.
2018-01-19 11:37:08 +08:00
Tathagata Das 2d41f040a3 [SPARK-23143][SS][PYTHON] Added python API for setting continuous trigger
## What changes were proposed in this pull request?
Self-explanatory.

## How was this patch tested?
New python tests.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #20309 from tdas/SPARK-23143.
2018-01-18 12:25:52 -08:00
Takuya UESHIN 5063b74811 [SPARK-23141][SQL][PYSPARK] Support data type string as a returnType for registerJavaFunction.
## What changes were proposed in this pull request?

Currently `UDFRegistration.registerJavaFunction` doesn't support data type string as a `returnType` whereas `UDFRegistration.register`, `udf`, or `pandas_udf` does.
We can support it for `UDFRegistration.registerJavaFunction` as well.

## How was this patch tested?

Added a doctest and existing tests.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20307 from ueshin/issues/SPARK-23141.
2018-01-18 22:33:04 +09:00
hyukjinkwon 39d244d921 [SPARK-23122][PYTHON][SQL] Deprecate register* for UDFs in SQLContext and Catalog in PySpark
## What changes were proposed in this pull request?

This PR proposes to deprecate `register*` for UDFs in `SQLContext` and `Catalog` in Spark 2.3.0.

These are inconsistent with Scala / Java APIs and also these basically do the same things with `spark.udf.register*`.

Also, this PR moves the logcis from `[sqlContext|spark.catalog].register*` to `spark.udf.register*` and reuse the docstring.

This PR also handles minor doc corrections. It also includes https://github.com/apache/spark/pull/20158

## How was this patch tested?

Manually tested, manually checked the API documentation and tests added to check if deprecated APIs call the aliases correctly.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20288 from HyukjinKwon/deprecate-udf.
2018-01-18 14:51:05 +09:00
Henry Robinson 1f3d933e0b [SPARK-23062][SQL] Improve EXCEPT documentation
## What changes were proposed in this pull request?

Make the default behavior of EXCEPT (i.e. EXCEPT DISTINCT) more
explicit in the documentation, and call out the change in behavior
from 1.x.

Author: Henry Robinson <henry@cloudera.com>

Closes #20254 from henryr/spark-23062.
2018-01-17 16:01:41 +08:00
gatorsmile b85eb946ac [SPARK-22978][PYSPARK] Register Vectorized UDFs for SQL Statement
## What changes were proposed in this pull request?
Register Vectorized UDFs for SQL Statement. For example,

```Python
>>> from pyspark.sql.functions import pandas_udf, PandasUDFType
>>> pandas_udf("integer", PandasUDFType.SCALAR)
... def add_one(x):
...     return x + 1
...
>>> _ = spark.udf.register("add_one", add_one)
>>> spark.sql("SELECT add_one(id) FROM range(3)").collect()
[Row(add_one(id)=1), Row(add_one(id)=2), Row(add_one(id)=3)]
```

## How was this patch tested?
Added test cases

Author: gatorsmile <gatorsmile@gmail.com>

Closes #20171 from gatorsmile/supportVectorizedUDF.
2018-01-16 20:20:33 +09:00
Takeshi Yamamuro b59808385c [SPARK-23023][SQL] Cast field data to strings in showString
## What changes were proposed in this pull request?
The current `Datset.showString` prints rows thru `RowEncoder` deserializers like;
```
scala> Seq(Seq(Seq(1, 2), Seq(3), Seq(4, 5, 6))).toDF("a").show(false)
+------------------------------------------------------------+
|a                                                           |
+------------------------------------------------------------+
|[WrappedArray(1, 2), WrappedArray(3), WrappedArray(4, 5, 6)]|
+------------------------------------------------------------+
```
This result is incorrect because the correct one is;
```
scala> Seq(Seq(Seq(1, 2), Seq(3), Seq(4, 5, 6))).toDF("a").show(false)
+------------------------+
|a                       |
+------------------------+
|[[1, 2], [3], [4, 5, 6]]|
+------------------------+
```
So, this pr fixed code in `showString` to cast field data to strings before printing.

## How was this patch tested?
Added tests in `DataFrameSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #20214 from maropu/SPARK-23023.
2018-01-15 16:26:52 +08:00
hyukjinkwon cd9f49a2ae [SPARK-22980][PYTHON][SQL] Clarify the length of each series is of each batch within scalar Pandas UDF
## What changes were proposed in this pull request?

This PR proposes to add a note that saying the length of a scalar Pandas UDF's `Series` is not of the whole input column but of the batch.

We are fine for a group map UDF because the usage is different from our typical UDF but scalar UDFs might cause confusion with the normal UDF.

For example, please consider this example:

```python
from pyspark.sql.functions import pandas_udf, col, lit

df = spark.range(1)
f = pandas_udf(lambda x, y: len(x) + y, LongType())
df.select(f(lit('text'), col('id'))).show()
```

```
+------------------+
|<lambda>(text, id)|
+------------------+
|                 1|
+------------------+
```

```python
from pyspark.sql.functions import udf, col, lit

df = spark.range(1)
f = udf(lambda x, y: len(x) + y, "long")
df.select(f(lit('text'), col('id'))).show()
```

```
+------------------+
|<lambda>(text, id)|
+------------------+
|                 4|
+------------------+
```

## How was this patch tested?

Manually built the doc and checked the output.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20237 from HyukjinKwon/SPARK-22980.
2018-01-13 16:13:44 +09:00
Bryan Cutler e599837248 [SPARK-23009][PYTHON] Fix for non-str col names to createDataFrame from Pandas
## What changes were proposed in this pull request?

This the case when calling `SparkSession.createDataFrame` using a Pandas DataFrame that has non-str column labels.

The column name conversion logic to handle non-string or unicode in python2 is:
```
if column is not any type of string:
    name = str(column)
else if column is unicode in Python 2:
    name = column.encode('utf-8')
```

## How was this patch tested?

Added a new test with a Pandas DataFrame that has int column labels

Author: Bryan Cutler <cutlerb@gmail.com>

Closes #20210 from BryanCutler/python-createDataFrame-int-col-error-SPARK-23009.
2018-01-10 14:55:24 +09:00
Bryan Cutler 7bcc266681 [SPARK-23018][PYTHON] Fix createDataFrame from Pandas timestamp series assignment
## What changes were proposed in this pull request?

This fixes createDataFrame from Pandas to only assign modified timestamp series back to a copied version of the Pandas DataFrame.  Previously, if the Pandas DataFrame was only a reference (e.g. a slice of another) each series will still get assigned back to the reference even if it is not a modified timestamp column.  This caused the following warning "SettingWithCopyWarning: A value is trying to be set on a copy of a slice from a DataFrame."

## How was this patch tested?

existing tests

Author: Bryan Cutler <cutlerb@gmail.com>

Closes #20213 from BryanCutler/pyspark-createDataFrame-copy-slice-warn-SPARK-23018.
2018-01-10 14:00:07 +09:00
Guilherme Berger 3e40eb3f1f [SPARK-22566][PYTHON] Better error message for _merge_type in Pandas to Spark DF conversion
## What changes were proposed in this pull request?

It provides a better error message when doing `spark_session.createDataFrame(pandas_df)` with no schema and an error occurs in the schema inference due to incompatible types.

The Pandas column names are propagated down and the error message mentions which column had the merging error.

https://issues.apache.org/jira/browse/SPARK-22566

## How was this patch tested?

Manually in the `./bin/pyspark` console, and with new tests: `./python/run-tests`

<img width="873" alt="screen shot 2017-11-21 at 13 29 49" src="https://user-images.githubusercontent.com/3977115/33080121-382274e0-cecf-11e7-808f-057a65bb7b00.png">

I state that the contribution is my original work and that I license the work to the Apache Spark project under the project’s open source license.

Author: Guilherme Berger <gberger@palantir.com>

Closes #19792 from gberger/master.
2018-01-08 14:32:05 +09:00
hyukjinkwon 993f21567a [SPARK-22901][PYTHON][FOLLOWUP] Adds the doc for asNondeterministic for wrapped UDF function
## What changes were proposed in this pull request?

This PR wraps the `asNondeterministic` attribute in the wrapped UDF function to set the docstring properly.

```python
from pyspark.sql.functions import udf
help(udf(lambda x: x).asNondeterministic)
```

Before:

```
Help on function <lambda> in module pyspark.sql.udf:

<lambda> lambda
(END
```

After:

```
Help on function asNondeterministic in module pyspark.sql.udf:

asNondeterministic()
    Updates UserDefinedFunction to nondeterministic.

    .. versionadded:: 2.3
(END)
```

## How was this patch tested?

Manually tested and a simple test was added.

Author: hyukjinkwon <gurwls223@gmail.com>

Closes #20173 from HyukjinKwon/SPARK-22901-followup.
2018-01-06 23:08:26 +08:00
Li Jin f2dd8b9237 [SPARK-22930][PYTHON][SQL] Improve the description of Vectorized UDFs for non-deterministic cases
## What changes were proposed in this pull request?

Add tests for using non deterministic UDFs in aggregate.

Update pandas_udf docstring w.r.t to determinism.

## How was this patch tested?
test_nondeterministic_udf_in_aggregate

Author: Li Jin <ice.xelloss@gmail.com>

Closes #20142 from icexelloss/SPARK-22930-pandas-udf-deterministic.
2018-01-06 16:11:20 +08:00
gatorsmile 5aadbc929c [SPARK-22939][PYSPARK] Support Spark UDF in registerFunction
## What changes were proposed in this pull request?
```Python
import random
from pyspark.sql.functions import udf
from pyspark.sql.types import IntegerType, StringType
random_udf = udf(lambda: int(random.random() * 100), IntegerType()).asNondeterministic()
spark.catalog.registerFunction("random_udf", random_udf, StringType())
spark.sql("SELECT random_udf()").collect()
```

We will get the following error.
```
Py4JError: An error occurred while calling o29.__getnewargs__. Trace:
py4j.Py4JException: Method __getnewargs__([]) does not exist
	at py4j.reflection.ReflectionEngine.getMethod(ReflectionEngine.java:318)
	at py4j.reflection.ReflectionEngine.getMethod(ReflectionEngine.java:326)
	at py4j.Gateway.invoke(Gateway.java:274)
	at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
	at py4j.commands.CallCommand.execute(CallCommand.java:79)
	at py4j.GatewayConnection.run(GatewayConnection.java:214)
	at java.lang.Thread.run(Thread.java:745)
```

This PR is to support it.

## How was this patch tested?
WIP

Author: gatorsmile <gatorsmile@gmail.com>

Closes #20137 from gatorsmile/registerFunction.
2018-01-04 21:07:31 +08:00
Felix Cheung df95a908ba [SPARK-22933][SPARKR] R Structured Streaming API for withWatermark, trigger, partitionBy
## What changes were proposed in this pull request?

R Structured Streaming API for withWatermark, trigger, partitionBy

## How was this patch tested?

manual, unit tests

Author: Felix Cheung <felixcheung_m@hotmail.com>

Closes #20129 from felixcheung/rwater.
2018-01-03 21:43:14 -08:00
Bryan Cutler 1c9f95cb77 [SPARK-22530][PYTHON][SQL] Adding Arrow support for ArrayType
## What changes were proposed in this pull request?

This change adds `ArrayType` support for working with Arrow in pyspark when creating a DataFrame, calling `toPandas()`, and using vectorized `pandas_udf`.

## How was this patch tested?

Added new Python unit tests using Array data.

Author: Bryan Cutler <cutlerb@gmail.com>

Closes #20114 from BryanCutler/arrow-ArrayType-support-SPARK-22530.
2018-01-02 07:13:27 +09:00
Takeshi Yamamuro f2b3525c17 [SPARK-22771][SQL] Concatenate binary inputs into a binary output
## What changes were proposed in this pull request?
This pr modified `concat` to concat binary inputs into a single binary output.
`concat` in the current master always output data as a string. But, in some databases (e.g., PostgreSQL), if all inputs are binary, `concat` also outputs binary.

## How was this patch tested?
Added tests in `SQLQueryTestSuite` and `TypeCoercionSuite`.

Author: Takeshi Yamamuro <yamamuro@apache.org>

Closes #19977 from maropu/SPARK-22771.
2017-12-30 14:09:56 +08:00
Takuya UESHIN 11a849b3a7 [SPARK-22370][SQL][PYSPARK][FOLLOW-UP] Fix a test failure when xmlrunner is installed.
## What changes were proposed in this pull request?

This is a follow-up pr of #19587.

If `xmlrunner` is installed, `VectorizedUDFTests.test_vectorized_udf_check_config` fails by the following error because the `self` which is a subclass of `unittest.TestCase` in the UDF `check_records_per_batch` can't be pickled anymore.

```
PicklingError: Cannot pickle files that are not opened for reading: w
```

This changes the UDF not to refer the `self`.

## How was this patch tested?

Tested locally.

Author: Takuya UESHIN <ueshin@databricks.com>

Closes #20115 from ueshin/issues/SPARK-22370_fup1.
2017-12-29 23:04:28 +09:00
soonmok-kwon ffe6fd77a4 [SPARK-22818][SQL] csv escape of quote escape
## What changes were proposed in this pull request?

Escape of escape should be considered when using the UniVocity csv encoding/decoding library.

Ref: https://github.com/uniVocity/univocity-parsers#escaping-quote-escape-characters

One option is added for reading and writing CSV: `escapeQuoteEscaping`

## How was this patch tested?

Unit test added.

Author: soonmok-kwon <soonmok.kwon@navercorp.com>

Closes #20004 from ep1804/SPARK-22818.
2017-12-29 07:30:06 +08:00