### What changes were proposed in this pull request?
This PR switches python to python3 in `make-distribution.sh`.
### Why are the changes needed?
SPARK-29672 changed this
- https://github.com/apache/spark/pull/26330/files#diff-8cf6167d58ce775a08acafcfe6f40966
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
N/A
Closes#26844 from wangyum/SPARK-30211.
Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This pr intends to upgrade lz4-java from 1.6.0 to 1.7.0.
### Why are the changes needed?
This release includes a performance bug (https://github.com/lz4/lz4-java/pull/143) fixed by JoshRosen and some improvements (e.g., LZ4 binary update). You can see the link below for the changes;
https://github.com/lz4/lz4-java/blob/master/CHANGES.md#170
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Existing tests.
Closes#26823 from maropu/LZ4_1_7_0.
Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to upgrade `Jersey` from 2.29 to 2.29.1.
### Why are the changes needed?
This will bring several bug fixes and important dependency upgrades.
- https://eclipse-ee4j.github.io/jersey.github.io/release-notes/2.29.1.html
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins.
Closes#26785 from dongjoon-hyun/SPARK-30156.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to upgrade `Apache HttpCore` from 4.4.10 to 4.4.12.
### Why are the changes needed?
`Apache HttpCore v4.4.11` is the first official release for JDK11.
> This is a maintenance release that corrects a number of defects in non-blocking SSL session code that caused compatibility issues with TLSv1.3 protocol implementation shipped with Java 11.
For the full release note, please see the following.
- https://www.apache.org/dist/httpcomponents/httpcore/RELEASE_NOTES-4.4.x.txt
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins.
Closes#26786 from dongjoon-hyun/SPARK-30157.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to upgrade Maven from 3.6.2 to 3.6.3.
### Why are the changes needed?
This will bring bug fixes like the following.
- MNG-6759 Maven fails to use <repositories> section from dependency when resolving transitive dependencies in some cases
- MNG-6760 ExclusionArtifactFilter result invalid when wildcard exclusion is followed by other exclusions
The following is the full release note.
- https://maven.apache.org/docs/3.6.3/release-notes.html
### Does this PR introduce any user-facing change?
No. (This is a dev-environment change.)
### How was this patch tested?
Pass the Jenkins with both SBT and Maven.
Closes#26770 from dongjoon-hyun/SPARK-30142.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to cut `org.eclipse.jetty:jetty-webapp`and `org.eclipse.jetty:jetty-xml` transitive dependency from `hadoop-common`.
### Why are the changes needed?
This will simplify our dependency management by the removal of unused dependencies.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the GitHub Action with all combinations and the Jenkins UT with (Hadoop-3.2).
Closes#26742 from dongjoon-hyun/SPARK-30051.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
Move some classes extending Scala collections into parallel source trees, to support 2.13; other minor collection-related modifications.
Modify some classes extending Scala collections to work with 2.13 as well as 2.12. In many cases, this means introducing parallel source trees, as the type hierarchy changed in ways that one class can't support both.
### Why are the changes needed?
To support building for Scala 2.13 in the future.
### Does this PR introduce any user-facing change?
There should be no behavior change.
### How was this patch tested?
Existing tests. Note that the 2.13 changes are not tested by the PR builder, of course. They compile in 2.13 but can't even be tested locally. Later, once the project can be compiled for 2.13, thus tested, it's possible the 2.13 implementations will need updates.
Closes#26728 from srowen/SPARK-30012.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR proposes to remove the leftover. After https://github.com/apache/spark/pull/22615, we don't have Hadoop 2.6 profile anymore in master.
### Why are the changes needed?
Using "test-hadoop2.6" against master branch in a PR wouldn't work.
### Does this PR introduce any user-facing change?
No (dev only).
### How was this patch tested?
Manually tested at https://github.com/apache/spark/pull/26707 and Jenkins build will test.
Without this fix, and hadoop2.6 in the pr title, it shows as below:
```
========================================================================
Building Spark
========================================================================
[error] Could not find hadoop2.6 in the list. Valid options are dict_keys(['hadoop2.7', 'hadoop3.2'])
Attempting to post to Github...
```
Closes#26708 from HyukjinKwon/SPARK-25016.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Currently, Apache Spark PR Builder using `hive-1.2` for `hadoop-2.7` and `hive-2.3` for `hadoop-3.2`. This PR aims to support
- `[test-hive1.2]` in PR builder
- `[test-hive2.3]` in PR builder to be consistent and independent of the default profile
- After this PR, all PR builders will use Hive 2.3 by default (because Spark uses Hive 2.3 by default as of c98e5eb339)
- Use default profile in AppVeyor build.
Note that this was reverted due to unexpected test failure at `ThriftServerPageSuite`, which was investigated in https://github.com/apache/spark/pull/26706 . This PR fixed it by letting it use their own forked JVM. There is no explicit evidence for this fix and it was just my speculation, and thankfully it fixed at least.
### Why are the changes needed?
This new tag allows us more flexibility.
### Does this PR introduce any user-facing change?
No. (This is a dev-only change.)
### How was this patch tested?
Check the Jenkins triggers in this PR.
Default:
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using SBT with these arguments: -Phadoop-2.7 -Phive-2.3 -Phive-thriftserver -Pmesos -Pspark-ganglia-lgpl -Phadoop-cloud -Phive -Pkubernetes -Pkinesis-asl -Pyarn test:package streaming-kinesis-asl-assembly/assembly
```
`[test-hive1.2][test-hadoop3.2]`:
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using SBT with these arguments: -Phadoop-3.2 -Phive-1.2 -Phadoop-cloud -Pyarn -Pspark-ganglia-lgpl -Phive -Phive-thriftserver -Pmesos -Pkubernetes -Pkinesis-asl test:package streaming-kinesis-asl-assembly/assembly
```
`[test-maven][test-hive-2.3]`:
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using Maven with these arguments: -Phadoop-2.7 -Phive-2.3 -Pspark-ganglia-lgpl -Pyarn -Phive -Phadoop-cloud -Pkinesis-asl -Pmesos -Pkubernetes -Phive-thriftserver clean package -DskipTests
```
Closes#26710 from HyukjinKwon/SPARK-29991.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Currently, Apache Spark PR Builder using `hive-1.2` for `hadoop-2.7` and `hive-2.3` for `hadoop-3.2`. This PR aims to support `[test-hive1.2]` in PR Builder in order to cut the correlation between `hive-1.2/2.3` to `hadoop-2.7/3.2`. After this PR, the PR Builder will use `hive-2.3` by default for all profiles (if there is no `test-hive1.2`.)
### Why are the changes needed?
This new tag allows us more flexibility.
### Does this PR introduce any user-facing change?
No. (This is a dev-only change.)
### How was this patch tested?
Check the Jenkins triggers in this PR.
**BEFORE**
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using SBT with these arguments: -Phadoop-2.7 -Phive-1.2 -Pyarn -Pkubernetes -Phive -Phadoop-cloud -Pspark-ganglia-lgpl -Phive-thriftserver -Pkinesis-asl -Pmesos test:package streaming-kinesis-asl-assembly/assembly
```
**AFTER**
1. Title: [[SPARK-29991][INFRA][test-hive1.2] Support `test-hive1.2` in PR Builder](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/114550/testReport)
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using SBT with these arguments: -Phadoop-2.7 -Phive-1.2 -Pkinesis-asl -Phadoop-cloud -Pyarn -Phive -Pmesos -Pspark-ganglia-lgpl -Pkubernetes -Phive-thriftserver test:package streaming-kinesis-asl-assembly/assembly
```
2. Title: [[SPARK-29991][INFRA] Support `test hive1.2` in PR Builder](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/114551/testReport)
- Note that I removed the hyphen intentionally from `test-hive1.2`.
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using SBT with these arguments: -Phadoop-2.7 -Phive-thriftserver -Pkubernetes -Pspark-ganglia-lgpl -Phadoop-cloud -Phive -Pmesos -Pyarn -Pkinesis-asl test:package streaming-kinesis-asl-assembly/assembly
```
Closes#26695 from dongjoon-hyun/SPARK-29991.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to add another pre-built binary distribution with `-Phadoop-2.7 -Phive-1.2` at `Apache Spark 3.0.0`.
**PRE-BUILT BINARY DISTRIBUTION**
```
spark-3.0.0-SNAPSHOT-bin-hadoop2.7-hive1.2.tgz
spark-3.0.0-SNAPSHOT-bin-hadoop2.7-hive1.2.tgz.asc
spark-3.0.0-SNAPSHOT-bin-hadoop2.7-hive1.2.tgz.sha512
```
**CONTENTS (snippet)**
```
$ ls *hadoop-*
hadoop-annotations-2.7.4.jar hadoop-mapreduce-client-shuffle-2.7.4.jar
hadoop-auth-2.7.4.jar hadoop-yarn-api-2.7.4.jar
hadoop-client-2.7.4.jar hadoop-yarn-client-2.7.4.jar
hadoop-common-2.7.4.jar hadoop-yarn-common-2.7.4.jar
hadoop-hdfs-2.7.4.jar hadoop-yarn-server-common-2.7.4.jar
hadoop-mapreduce-client-app-2.7.4.jar hadoop-yarn-server-web-proxy-2.7.4.jar
hadoop-mapreduce-client-common-2.7.4.jar parquet-hadoop-1.10.1.jar
hadoop-mapreduce-client-core-2.7.4.jar parquet-hadoop-bundle-1.6.0.jar
hadoop-mapreduce-client-jobclient-2.7.4.jar
$ ls *hive-*
hive-beeline-1.2.1.spark2.jar hive-jdbc-1.2.1.spark2.jar
hive-cli-1.2.1.spark2.jar hive-metastore-1.2.1.spark2.jar
hive-exec-1.2.1.spark2.jar spark-hive-thriftserver_2.12-3.0.0-SNAPSHOT.jar
```
### Why are the changes needed?
Since Apache Spark switched to use `-Phive-2.3` by default, all pre-built binary distribution will use `-Phive-2.3`. This PR adds `hadoop-2.7/hive-1.2` distribution to provide a similar combination like `Apache Spark 2.4` line.
### Does this PR introduce any user-facing change?
Yes. This is additional distribution which resembles to `Apache Spark 2.4` line in terms of `hive` version.
### How was this patch tested?
Manual.
Please note that we need a dry-run mode, but the AS-IS release script do not generate additional combinations including this in `dry-run` mode.
Closes#26688 from dongjoon-hyun/SPARK-29989.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Xiao Li <gatorsmile@gmail.com>
### What changes were proposed in this pull request?
This PR aims to skip building test artifacts in `dev/make-distribution.sh`.
Since Apache Spark 3.0.0, we need to build additional binary distribution, this helps the release process by speeding up building multiple binary distributions.
### Why are the changes needed?
Since the generated binary artifacts are irrelevant to the test jars, we can skip this.
**BEFORE**
```
$ time dev/make-distribution.sh
726.86 real 2526.04 user 45.63 sys
```
**AFTER**
```
$ time dev/make-distribution.sh
305.54 real 1099.99 user 26.52 sys
```
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Manually check `dev/make-distribution.sh` result and time.
Closes#26689 from dongjoon-hyun/SPARK-30056.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to fix a type; `rogue` -> `rouge` .
This is a follow-up of https://github.com/apache/spark/pull/26521.
### Why are the changes needed?
To support `Python 3`, we upgraded from `pygments` to `rouge`.
### Does this PR introduce any user-facing change?
No. (This is for only document generation.)
### How was this patch tested?
Manually.
```
$ docker build -t test dev/create-release/spark-rm/
...
1 gem installed
Successfully installed rouge-3.13.0
Parsing documentation for rouge-3.13.0
Installing ri documentation for rouge-3.13.0
Done installing documentation for rouge after 4 seconds
1 gem installed
Removing intermediate container 9bd8707d9e84
---> a18b2f6b0bb9
...
```
Closes#26686 from dongjoon-hyun/SPARK-28752.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
Move scalafmt to Scala 2.12 profile; bump to 0.12.
### Why are the changes needed?
To facilitate a future Scala 2.13 build.
### Does this PR introduce any user-facing change?
None.
### How was this patch tested?
This isn't covered by tests, it's a convenience for contributors.
Closes#26655 from srowen/SPARK-29293.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to upgrade to `Apache Commons Lang 3.9`.
### Why are the changes needed?
`Apache Commons Lang 3.9` is the first official release to support JDK9+. The following is the full release note.
- https://commons.apache.org/proper/commons-lang/release-notes/RELEASE-NOTES-3.9.txt
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins with the existing tests.
Closes#26672 from dongjoon-hyun/SPARK-30035.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to upgrade to Apache ORC 1.5.8.
### Why are the changes needed?
This will bring the latest bug fixes. The following is the full release note.
- https://issues.apache.org/jira/projects/ORC/versions/12346462
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins with the existing tests.
Closes#26669 from dongjoon-hyun/SPARK-ORC-1.5.8.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to update `test-dependencies.sh` to validate all available `Hadoop/Hive` combination.
### Why are the changes needed?
Previously, we have been checking only `Hadoop2.7/Hive1.2` and `Hadoop3.2/Hive2.3`.
We need to validate `Hadoop2.7/Hive2.3` additionally for Apache Spark 3.0.
### Does this PR introduce any user-facing change?
No. (This is a dev-only change).
### How was this patch tested?
Pass the GitHub Action (Linter) with the newly updated manifest because this is only dependency check.
Closes#26646 from dongjoon-hyun/SPARK-30005.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to add `-Phive-2.3` to publish profiles.
Since Apache Spark 3.0.0, Maven artifacts will be publish with Apache Hive 2.3 profile only.
This PR also will recover `SNAPSHOT` publishing Jenkins job.
- https://amplab.cs.berkeley.edu/jenkins/view/Spark%20Packaging/job/spark-master-maven-snapshots/
We will provide the pre-built distributions (with Hive 1.2.1 also) like Apache Spark 2.4.
SPARK-29989 will update the release script to generate all combinations.
### Why are the changes needed?
This will reduce the explicit dependency on the illegitimate Hive fork in Maven repository.
### Does this PR introduce any user-facing change?
Yes, but this is dev only changes.
### How was this patch tested?
Manual.
Closes#26648 from dongjoon-hyun/SPARK-30007.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims the followings.
- Add two profiles, `hive-1.2` and `hive-2.3` (default)
- Validate if we keep the existing combination at least. (Hadoop-2.7 + Hive 1.2 / Hadoop-3.2 + Hive 2.3).
For now, we assumes that `hive-1.2` is explicitly used with `hadoop-2.7` and `hive-2.3` with `hadoop-3.2`. The followings are beyond the scope of this PR.
- SPARK-29988 Adjust Jenkins jobs for `hive-1.2/2.3` combination
- SPARK-29989 Update release-script for `hive-1.2/2.3` combination
- SPARK-29991 Support `hive-1.2/2.3` in PR Builder
### Why are the changes needed?
This will help to switch our dependencies to update the exposed dependencies.
### Does this PR introduce any user-facing change?
This is a dev-only change that the build profile combinations are changed.
- `-Phadoop-2.7` => `-Phadoop-2.7 -Phive-1.2`
- `-Phadoop-3.2` => `-Phadoop-3.2 -Phive-2.3`
### How was this patch tested?
Pass the Jenkins with the dependency check and tests to make it sure we don't change anything for now.
- [Jenkins (-Phadoop-2.7 -Phive-1.2)](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/114192/consoleFull)
- [Jenkins (-Phadoop-3.2 -Phive-2.3)](https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/114192/consoleFull)
Also, from now, GitHub Action validates the following combinations.
Closes#26619 from dongjoon-hyun/SPARK-29981.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR fixes SparkR lint errors and adds `lint-r` GitHub Action to protect the branch.
### Why are the changes needed?
It turns out that we currently don't run it. It's recovered yesterday. However, after that, our Jenkins linter jobs (`master`/`branch-2.4`) has been broken on `lint-r` tasks.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the GitHub Action on this PR in addition to Jenkins R and AppVeyor R.
Closes#26564 from dongjoon-hyun/SPARK-29936.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to make `lint-r` exits with non-zero in case of errors. Please note that `lint-r` works correctly when everything are installed correctly.
### Why are the changes needed?
There are two cases which hide errors from Jenkins/AppVeyor/GitHubAction.
1. `lint-r` exits with zero if there is no R installation.
```bash
$ dev/lint-r
dev/lint-r: line 25: type: Rscript: not found
ERROR: You should install R
$ echo $?
0
```
2. `lint-r` exits with zero if we didn't do `R/install-dev.sh`.
```bash
$ dev/lint-r
Error: You should install SparkR in a local directory with `R/install-dev.sh`.
In addition: Warning message:
In library(SparkR, lib.loc = LOCAL_LIB_LOC, logical.return = TRUE) :
no library trees found in 'lib.loc'
Execution halted
lintr checks passed. // <=== Please note here
$ echo $?
0
```
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Manually check the above two cases.
Closes#26561 from dongjoon-hyun/SPARK-29932.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to ignore `GitHub Action` and `AppVeyor` file changes. When we touch these files, Jenkins job should not trigger a full testing.
### Why are the changes needed?
Currently, these files are categorized to `root` and trigger the full testing and ends up wasting the Jenkins resources.
- https://github.com/apache/spark/pull/26555
```
[info] Using build tool sbt with Hadoop profile hadoop2.7 under environment amplab_jenkins
From https://github.com/apache/spark
* [new branch] master -> master
[info] Found the following changed modules: sparkr, root
[info] Setup the following environment variables for tests:
```
### Does this PR introduce any user-facing change?
No. (Jenkins testing only).
### How was this patch tested?
Manually.
```
$ dev/run-tests.py -h -v
...
Trying:
[x.name for x in determine_modules_for_files([".github/workflows/master.yml", "appveyor.xml"])]
Expecting:
[]
...
```
Closes#26556 from dongjoon-hyun/SPARK-IGNORE-APPVEYOR.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR proposes to switch `pygments.rb`, which only support Python 2 and seems inactive for the last few years (https://github.com/tmm1/pygments.rb), to Rouge which is pure Ruby code highlighter that is compatible with Pygments.
I thought it would be pretty difficult to change but thankfully Rouge does a great job as the alternative.
### Why are the changes needed?
We're moving to Python 3 and drop Python 2 completely.
### Does this PR introduce any user-facing change?
Maybe a little bit of different syntax style but should not have a notable change.
### How was this patch tested?
Manually tested the build and checked the documentation.
Closes#26521 from HyukjinKwon/SPARK-28752.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Upgrade Apache Arrow to version 0.15.1. This includes Java artifacts and increases the minimum required version of PyArrow also.
Version 0.12.0 to 0.15.1 includes the following selected fixes/improvements relevant to Spark users:
* ARROW-6898 - [Java] Fix potential memory leak in ArrowWriter and several test classes
* ARROW-6874 - [Python] Memory leak in Table.to_pandas() when conversion to object dtype
* ARROW-5579 - [Java] shade flatbuffer dependency
* ARROW-5843 - [Java] Improve the readability and performance of BitVectorHelper#getNullCount
* ARROW-5881 - [Java] Provide functionalities to efficiently determine if a validity buffer has completely 1 bits/0 bits
* ARROW-5893 - [C++] Remove arrow::Column class from C++ library
* ARROW-5970 - [Java] Provide pointer to Arrow buffer
* ARROW-6070 - [Java] Avoid creating new schema before IPC sending
* ARROW-6279 - [Python] Add Table.slice method or allow slices in \_\_getitem\_\_
* ARROW-6313 - [Format] Tracking for ensuring flatbuffer serialized values are aligned in stream/files.
* ARROW-6557 - [Python] Always return pandas.Series from Array/ChunkedArray.to_pandas, propagate field names to Series from RecordBatch, Table
* ARROW-2015 - [Java] Use Java Time and Date APIs instead of JodaTime
* ARROW-1261 - [Java] Add container type for Map logical type
* ARROW-1207 - [C++] Implement Map logical type
Changelog can be seen at https://arrow.apache.org/release/0.15.0.html
### Why are the changes needed?
Upgrade to get bug fixes, improvements, and maintain compatibility with future versions of PyArrow.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Existing tests, manually tested with Python 3.7, 3.8
Closes#26133 from BryanCutler/arrow-upgrade-015-SPARK-29376.
Authored-by: Bryan Cutler <cutlerb@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
remove python2.7 tests and test infra for 3.0+
### Why are the changes needed?
because python2.7 is finally going the way of the dodo.
### Does this PR introduce any user-facing change?
newp.
### How was this patch tested?
the build system will test this
Closes#26330 from shaneknapp/remove-py27-tests.
Lead-authored-by: shane knapp <incomplete@gmail.com>
Co-authored-by: shane <incomplete@gmail.com>
Signed-off-by: shane knapp <incomplete@gmail.com>
### What changes were proposed in this pull request?
This upgrades joda-time from 2.9 to 2.10.5.
### Why are the changes needed?
Joda 2.9 is almost 4 yrs ago and there are bugs fix and tz database updates.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Existing tests.
Closes#26389 from viirya/upgrade-joda.
Authored-by: Liang-Chi Hsieh <liangchi@uber.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Update the version of dropwizard metrics that Spark uses for metrics to 4.1.x, from 3.2.x.
### Why are the changes needed?
This helps JDK 9+ support, per for example https://github.com/dropwizard/metrics/pull/1236
### Does this PR introduce any user-facing change?
No, although downstream users with custom metrics may be affected.
### How was this patch tested?
Existing tests.
Closes#26332 from srowen/SPARK-29674.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR replaces `jira_client` API call for read-only access with public Apache JIRA REST API invocation.
### Why are the changes needed?
This will reduce the number of authenticated API invocations. I hope this will reduce the chance of CAPCHAR from Apache JIRA site.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Manual.
```
$ echo 26375 > .github-jira-max
$ dev/github_jira_sync.py
Read largest PR number previously seen: 26375
Retrieved 100 JIRA PR's from Github
1 PR's remain after excluding visted ones
Checking issue SPARK-29731
Writing largest PR number seen: 26376
Build PR dictionary
SPARK-29731
26376
Set 26376 with labels "PROJECT INFRA"
```
Closes#26376 from dongjoon-hyun/SPARK-29731.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to upgrade ASM to 7.2.
- https://issues.apache.org/jira/browse/XBEAN-322 (Upgrade to ASM 7.2)
- https://asm.ow2.io/versions.html
### Why are the changes needed?
This will bring the following patches.
- 317875: Infinite loop when parsing invalid method descriptor
- 317873: Add support for RET instruction in AdviceAdapter
- 317872: Throw an exception if visitFrame used incorrectly
- add support for Java 14
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins with the existing UTs.
Closes#26373 from dongjoon-hyun/SPARK-29729.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
`release-build.sh` fail to publish release under dry run mode with the following error message:
```
/opt/spark-rm/release-build.sh: line 429: pushd: spark-repo-g4MBm/org/apache/spark: No such file or directory
```
We need to at least run the `mvn clean install` command once to create the `$tmp_repo` path, but now those steps are all skipped under dry-run mode. This PR fixes the issue.
### How was this patch tested?
Tested locally.
Closes#26329 from jiangxb1987/dryrun.
Authored-by: Xingbo Jiang <xingbo.jiang@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
Update `release-build.sh`, to allow pyspark version name format `${versionNumber}-preview`, otherwise the release script won't generate pyspark release tarballs.
### How was this patch tested?
Tested locally.
Closes#26306 from jiangxb1987/buildPython.
Authored-by: Xingbo Jiang <xingbo.jiang@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to upgrade to Apache ORC 1.5.7.
### Why are the changes needed?
This will bring the latest bug fixes. The following is the full release note.
- https://issues.apache.org/jira/projects/ORC/versions/12345702
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins with the existing tests.
Closes#26276 from dongjoon-hyun/SPARK-29617.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to add `hadoop-3.2` profile to pre-built binary package releases.
### Why are the changes needed?
Since Apache Spark 3.0.0, we provides Hadoop 3.2 pre-built binary.
### Does this PR introduce any user-facing change?
No. (Although the artifacts are available, this change is for release managers).
### How was this patch tested?
Manual. Please note that `DRY_RUN=0` disables these combination.
```
$ dev/create-release/release-build.sh package
...
Packages to build: without-hadoop hadoop3.2 hadoop2.7
make_binary_release without-hadoop -Pscala-2.12 -Phadoop-provided 2.12
make_binary_release hadoop3.2 -Pscala-2.12 -Phadoop-3.2 -Phive -Phive-thriftserver 2.12
make_binary_release hadoop2.7 -Pscala-2.12 -Phadoop-2.7 -Phive -Phive-thriftserver withpip,withr 2.12
```
Closes#26260 from dongjoon-hyun/SPARK-29608.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This proposes to update the dropwizard/codahale metrics library version used by Spark to `3.2.6` which is the last version supporting Ganglia.
### Why are the changes needed?
Spark is currently using Dropwizard metrics version 3.1.5, a version that is no more actively developed nor maintained, according to the project's Github repo README.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Existing tests + manual tests on a YARN cluster.
Closes#26212 from LucaCanali/updateDropwizardVersion.
Authored-by: Luca Canali <luca.canali@cern.ch>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
Add mapPartitionsWithIndex for RDDBarrier.
### Why are the changes needed?
There is only one method in `RDDBarrier`. We often use the partition index as a label for the current partition. We need to get the index from `TaskContext` index in the method of `mapPartitions` which is not convenient.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
New UT.
Closes#26148 from ConeyLiu/barrier-index.
Authored-by: Xianyang Liu <xianyang.liu@intel.com>
Signed-off-by: Xingbo Jiang <xingbo.jiang@databricks.com>
### What changes were proposed in this pull request?
Updated kubernetes client.
### Why are the changes needed?
https://issues.apache.org/jira/browse/SPARK-27812https://issues.apache.org/jira/browse/SPARK-27927
We need this fix https://github.com/fabric8io/kubernetes-client/pull/1768 that was released on version 4.6 of the client. The root cause of the problem is better explained in https://github.com/apache/spark/pull/25785
### Does this PR introduce any user-facing change?
Nope, it should be transparent to users
### How was this patch tested?
This patch was tested manually using a simple pyspark job
```python
from pyspark.sql import SparkSession
if __name__ == '__main__':
spark = SparkSession.builder.getOrCreate()
```
The expected behaviour of this "job" is that both python's and jvm's process exit automatically after the main runs. This is the case for spark versions <= 2.4. On version 2.4.3, the jvm process hangs because there's a non daemon thread running
```
"OkHttp WebSocket https://10.96.0.1/..." #121 prio=5 os_prio=0 tid=0x00007fb27c005800 nid=0x24b waiting on condition [0x00007fb300847000]
"OkHttp WebSocket https://10.96.0.1/..." #117 prio=5 os_prio=0 tid=0x00007fb28c004000 nid=0x247 waiting on condition [0x00007fb300e4b000]
```
This is caused by a bug on `kubernetes-client` library, which is fixed on the version that we are upgrading to.
When the mentioned job is run with this patch applied, the behaviour from spark <= 2.4.3 is restored and both processes terminate successfully
Closes#26093 from igorcalabria/k8s-client-update.
Authored-by: igor.calabria <igor.calabria@ubee.in>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
Release blog: https://medium.com/cowtowncoder/jackson-2-10-features-cd880674d8a2
Fixes the following CVE's:
https://www.cvedetails.com/cve/CVE-2019-16942/https://www.cvedetails.com/cve/CVE-2019-16943/
Looking back, there were 3 major goals for this minor release:
- Resolve the growing problem of “endless CVE patches”, a stream of fixes for reported CVEs related to “Polymorphic Deserialization” problem (described in “On Jackson CVEs… ”) that resulted in security tools forcing Jackson upgrades. 2.10 now includes “Safe Default Typing” that is hoped to resolve this problem.
- Evolve 2.x API towards 3.0, based on changes that were done in master, within limits of 2.x API backwards-compatibility requirements.
- Add JDK support for versions beyond Java 8: specifically add“module-info.class” for JDK9+, defining proper module definitions for Jackson components
Full changelog: https://github.com/FasterXML/jackson/wiki/Jackson-Release-2.10
Improved Scala 2.13 support: https://github.com/FasterXML/jackson/wiki/Jackson-Release-2.10#scala
### Why are the changes needed?
Patches CVE's reported by the vulnerability scanner.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Ran `mvn clean install -DskipTests` locally.
Closes#26131 from Fokko/SPARK-29483.
Authored-by: Fokko Driesprong <fokko@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
Updating univocity-parsers version to 2.8.3, which adds support for multiple character delimiters
Moving univocity-parsers version to spark-parent pom dependencyManagement section
Adding new utility method to build multi-char delimiter string, which delegates to existing one
Adding tests for multiple character delimited CSV
### What changes were proposed in this pull request?
Adds support for parsing CSV data using multiple-character delimiters. Existing logic for converting the input delimiter string to characters was kept and invoked in a loop. Project dependencies were updated to remove redundant declaration of `univocity-parsers` version, and also to change that version to the latest.
### Why are the changes needed?
It is quite common for people to have delimited data, where the delimiter is not a single character, but rather a sequence of characters. Currently, it is difficult to handle such data in Spark (typically needs pre-processing).
### Does this PR introduce any user-facing change?
Yes. Specifying the "delimiter" option for the DataFrame read, and providing more than one character, will no longer result in an exception. Instead, it will be converted as before and passed to the underlying library (Univocity), which has accepted multiple character delimiters since 2.8.0.
### How was this patch tested?
The `CSVSuite` tests were confirmed passing (including new methods), and `sbt` tests for `sql` were executed.
Closes#26027 from jeff303/SPARK-24540.
Authored-by: Jeff Evans <jeffrey.wayne.evans@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
Current dev/deps/spark-deps-hadoop-3.2 have some wrong deps, it's caused by `dev/test-dependencies.sh ` when build assembly dependencies.
add maven compile parameter `-am` to make it build with all deps, and get right result.
And update NOTICE-binary & NOTICE-binary for updated result.
### Why are the changes needed?
Update dev/deps/spark-hadoop-3.2
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
N/A
Closes#25984 from AngersZhuuuu/SPARK=29308.
Authored-by: angerszhu <angers.zhu@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
Minor version bump of Netty to patch reported CVE.
Patches: https://www.cvedetails.com/cve/CVE-2019-16869/
### Why are the changes needed?
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Compiled locally using `mvn clean install -DskipTests`
Closes#26099 from Fokko/SPARK-29445.
Authored-by: Fokko Driesprong <fokko@apache.org>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
This PR updates commons-beanutils to 1.9.4.
### Why are the changes needed?
CVE fixed in 1.9.4: http://commons.apache.org/proper/commons-beanutils/javadocs/v1.9.4/RELEASE-NOTES.txt
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Existing UTs.
Closes#26069 from peter-toth/SPARK-29410-update-commons-beanutils-to-1.9.4.
Authored-by: Peter Toth <peter.toth@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
This PR aims to update zstd-jni library to 1.4.3-1.
### Why are the changes needed?
This will bring the latest bug fixes in zstd itself. This is independent from another on-going Spark fix.
- https://github.com/facebook/zstd/releases/tag/v1.4.3
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins with the existing tests.
Closes#26002 from dongjoon-hyun/SPARK-29332.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
In the PR merge script, decode the raw output of subprocess commands like `git` using UTF-8 encoding, consistently.
### Why are the changes needed?
The merge script occasionally fails if run with Python 2 and the output of a command like `git` contains non-ASCII characters. I think this most usually happens when a user name, for example, contains Chinese characters.
This is because the output is decoded according to `sys.getdefaultencoding()`, which is ASCII in Python 2. It's UTF-8 in Python 3, by default.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
The change caused a merge that failed before to succeed.
Closes#25991 from srowen/MergePRUTF8.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
The current code uses org.apache.zookeeper:zookeeper:jar:3.4.6 and it will cause a security vulnerabilities. We could get some security info from https://www.tenable.com/cve/CVE-2019-0201
This reference remind to upgrate the version of `zookeeper` to 3.4.14 or later.
### Why are the changes needed?
This PR fix the security vulnerabilities.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Exists UT.
Closes#25933 from beliefer/upgrade-zookeeper.
Authored-by: gengjiaan <gengjiaan@360.cn>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
Update scalatest, scalacheck, scopt, clapper, scala-parser-combinators to latest maintenance release that is also cross-published for Scala 2.13.
### Why are the changes needed?
To build in the future for Scala 2.13
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Existing tests
Closes#25967 from srowen/SPARK-29289.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
The current code uses com.fasterxml.jackson.core:jackson-databind:jar:2.9.9.3 and it will cause a security vulnerabilities. We could get some security info from https://www.tenable.com/cve/CVE-2019-16335 and https://www.tenable.com/cve/CVE-2019-14540
This reference remind to upgrate the version of `jackson-databind` to 2.9.10 or later.
This PR also upgrade the version of jackson to 2.9.10.
### Why are the changes needed?
This PR fix the security vulnerabilities.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Exists UT.
Closes#25912 from beliefer/upgrade-jackson.
Authored-by: gengjiaan <gengjiaan@360.cn>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This is a followup for https://github.com/apache/spark/pull/24981
Seems we mistakenly didn't added `test_pandas_udf_cogrouped_map` into `modules.py`. So we don't have official test results against that PR.
```
...
Starting test(python3.6): pyspark.sql.tests.test_pandas_udf
...
Starting test(python3.6): pyspark.sql.tests.test_pandas_udf_grouped_agg
...
Starting test(python3.6): pyspark.sql.tests.test_pandas_udf_grouped_map
...
Starting test(python3.6): pyspark.sql.tests.test_pandas_udf_scalar
...
Starting test(python3.6): pyspark.sql.tests.test_pandas_udf_window
Finished test(python3.6): pyspark.sql.tests.test_pandas_udf (21s)
...
Finished test(python3.6): pyspark.sql.tests.test_pandas_udf_grouped_map (49s)
...
Finished test(python3.6): pyspark.sql.tests.test_pandas_udf_window (58s)
...
Finished test(python3.6): pyspark.sql.tests.test_pandas_udf_scalar (82s)
...
Finished test(python3.6): pyspark.sql.tests.test_pandas_udf_grouped_agg (105s)
...
```
If tests fail, we should revert that PR.
### Why are the changes needed?
Relevant tests should be ran.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Jenkins tests.
Closes#25890 from HyukjinKwon/SPARK-28840.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Update breeze dependency to 1.0.
### Why are the changes needed?
Breeze 1.0 supports Scala 2.13 and has a few bug fixes.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Existing tests.
Closes#25874 from srowen/SPARK-28772.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to increase the JVM CodeCacheSize from 0.5G to 1G.
### Why are the changes needed?
After upgrading to `Scala 2.12.10`, the following is observed during building.
```
2019-09-18T20:49:23.5030586Z OpenJDK 64-Bit Server VM warning: CodeCache is full. Compiler has been disabled.
2019-09-18T20:49:23.5032920Z OpenJDK 64-Bit Server VM warning: Try increasing the code cache size using -XX:ReservedCodeCacheSize=
2019-09-18T20:49:23.5034959Z CodeCache: size=524288Kb used=521399Kb max_used=521423Kb free=2888Kb
2019-09-18T20:49:23.5035472Z bounds [0x00007fa62c000000, 0x00007fa64c000000, 0x00007fa64c000000]
2019-09-18T20:49:23.5035781Z total_blobs=156549 nmethods=155863 adapters=592
2019-09-18T20:49:23.5036090Z compilation: disabled (not enough contiguous free space left)
```
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Manually check the Jenkins or GitHub Action build log (which should not have the above).
Closes#25836 from dongjoon-hyun/SPARK-CODE-CACHE-1G.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
This PR upgrade Scala to **2.12.10**.
Release notes:
- Fix regression in large string interpolations with non-String typed splices
- Revert "Generate shallower ASTs in pattern translation"
- Fix regression in classpath when JARs have 'a.b' entries beside 'a/b'
- Faster compiler: 5–10% faster since 2.12.8
- Improved compatibility with JDK 11, 12, and 13
- Experimental support for build pipelining and outline type checking
More details:
https://github.com/scala/scala/releases/tag/v2.12.10https://github.com/scala/scala/releases/tag/v2.12.9
## How was this patch tested?
Existing tests
Closes#25404 from wangyum/SPARK-28683.
Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
It upgrades ORC from 1.5.5 to 1.5.6 and adds closes the ORC readers when they aren't used to
create RecordReaders.
## How was this patch tested?
The changed unit tests were run.
Closes#25006 from omalley/spark-28208.
Lead-authored-by: Owen O'Malley <omalley@apache.org>
Co-authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR allows `bin/spark-submit --version` to show the correct information while the previous versions, which were created by `dev/create-release/do-release-docker.sh`, show incorrect information.
There are two root causes to show incorrect information:
1. Did not pass `USER` environment variable to the docker container
1. Did not keep `.git` directory in the work directory
### Why are the changes needed?
The information is missing while the previous versions show the correct information.
### Does this PR introduce any user-facing change?
Yes, the following is the console output in branch-2.3
```
$ bin/spark-submit --version
Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
/___/ .__/\_,_/_/ /_/\_\ version 2.3.4
/_/
Using Scala version 2.11.8, OpenJDK 64-Bit Server VM, 1.8.0_212
Branch HEAD
Compiled by user ishizaki on 2019-09-02T02:18:10Z
Revision 8c6f8150f3
Url https://gitbox.apache.org/repos/asf/spark.git
Type --help for more information.
```
Without this PR, the console output is as follows
```
$ spark-submit --version
Welcome to
____ __
/ __/__ ___ _____/ /__
_\ \/ _ \/ _ `/ __/ '_/
/___/ .__/\_,_/_/ /_/\_\ version 2.3.4
/_/
Using Scala version 2.11.8, OpenJDK 64-Bit Server VM, 1.8.0_212
Branch
Compiled by user on 2019-08-26T08:29:39Z
Revision
Url
Type --help for more information.
```
### How was this patch tested?
After building the package, I manually executed `bin/spark-submit --version`
Closes#25655 from kiszk/SPARK-28906.
Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
- Remove SQLContext.createExternalTable and Catalog.createExternalTable, deprecated in favor of createTable since 2.2.0, plus tests of deprecated methods
- Remove HiveContext, deprecated in 2.0.0, in favor of `SparkSession.builder.enableHiveSupport`
- Remove deprecated KinesisUtils.createStream methods, plus tests of deprecated methods, deprecate in 2.2.0
- Remove deprecated MLlib (not Spark ML) linear method support, mostly utility constructors and 'train' methods, and associated docs. This includes methods in LinearRegression, LogisticRegression, Lasso, RidgeRegression. These have been deprecated since 2.0.0
- Remove deprecated Pyspark MLlib linear method support, including LogisticRegressionWithSGD, LinearRegressionWithSGD, LassoWithSGD
- Remove 'runs' argument in KMeans.train() method, which has been a no-op since 2.0.0
- Remove deprecated ChiSqSelector isSorted protected method
- Remove deprecated 'yarn-cluster' and 'yarn-client' master argument in favor of 'yarn' and deploy mode 'cluster', etc
Notes:
- I was not able to remove deprecated DataFrameReader.json(RDD) in favor of DataFrameReader.json(Dataset); the former was deprecated in 2.2.0, but, it is still needed to support Pyspark's .json() method, which can't use a Dataset.
- Looks like SQLContext.createExternalTable was not actually deprecated in Pyspark, but, almost certainly was meant to be? Catalog.createExternalTable was.
- I afterwards noted that the toDegrees, toRadians functions were almost removed fully in SPARK-25908, but Felix suggested keeping just the R version as they hadn't been technically deprecated. I'd like to revisit that. Do we really want the inconsistency? I'm not against reverting it again, but then that implies leaving SQLContext.createExternalTable just in Pyspark too, which seems weird.
- I *kept* LogisticRegressionWithSGD, LinearRegressionWithSGD, LassoWithSGD, RidgeRegressionWithSGD in Pyspark, though deprecated, as it is hard to remove them (still used by StreamingLogisticRegressionWithSGD?) and they are not fully removed in Scala. Maybe should not have been deprecated.
### Why are the changes needed?
Deprecated items are easiest to remove in a major release, so we should do so as much as possible for Spark 3. This does not target items deprecated 'recently' as of Spark 2.3, which is still 18 months old.
### Does this PR introduce any user-facing change?
Yes, in that deprecated items are removed from some public APIs.
### How was this patch tested?
Existing tests.
Closes#25684 from srowen/SPARK-28980.
Lead-authored-by: Sean Owen <sean.owen@databricks.com>
Co-authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
### What changes were proposed in this pull request?
Upgrade netty-all to latest in the 4.1.x line which is 4.1.39-Final.
### Why are the changes needed?
Currency of dependencies.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Existing unit-tests against master branch.
Closes#25712 from n-marion/master.
Authored-by: Nicholas Marion <nmarion@us.ibm.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
We are adding other resource type support to the executors and Spark. We should show the resource information for each executor on the UI Executors page.
This also adds a toggle button to show the resources column. It is off by default.
### Why are the changes needed?
to show user what resources the executors have. Like Gpus, fpgas, etc
### Does this PR introduce any user-facing change?
Yes introduces UI and rest api changes to show the resources
### How was this patch tested?
Unit tests and manual UI tests on yarn and standalone modes.
Closes#25613 from tgravescs/SPARK-27489-gpu-ui-latest.
Authored-by: Thomas Graves <tgraves@nvidia.com>
Signed-off-by: Gengliang Wang <gengliang.wang@databricks.com>
### What changes were proposed in this pull request?
Upgrade kubernetes client from 4.1.2 to 4.4.2
### Why are the changes needed?
To fix compatibility issue with EKS since Amazon rolled out some security patches over the past week; 1.15.3, 1.14.6, 1.13.10, 1.12.10, and 1.11.10.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Pass the Jenkins and manually test on EKS.
Closes#25640 from andygrove/SPARK-28921.
Authored-by: Andy Grove <andygrove73@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR adds a release announce template.
### Why are the changes needed?
- We want to use a formal template including HTTPS in the future release.
- The future release managers don't need to search mailing list to find this form.
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
N/A.
Closes#25656 from dongjoon-hyun/SPARK-28951.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
i broke run-tests.py for non-PRB builds in this PR:
https://github.com/apache/spark/pull/25423
### Why are the changes needed?
to fix what i broke
### Does this PR introduce any user-facing change?
no
### How was this patch tested?
the build system will test this
Closes#25585 from shaneknapp/fix-run-tests.
Authored-by: shane knapp <incomplete@gmail.com>
Signed-off-by: shane knapp <incomplete@gmail.com>
## What changes were proposed in this pull request?
we need to add the ability to test PRBs against java11.
see comments here: https://github.com/apache/spark/pull/25405
## How was this patch tested?
the build system will test this.
Closes#25423 from shaneknapp/spark-prb-java11.
Authored-by: shane knapp <incomplete@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
This PR aims to specify Jekyll Version explicitly in our release docker image.
### Why are the changes needed?
Recently, Jekyll 4.0 is released and it dropped Ruby 2.3 support.
This breaks our release docker image build.
```
Building native extensions. This could take a while...
ERROR: Error installing jekyll:
jekyll-sass-converter requires Ruby version >= 2.4.0.
```
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
The following should succeed.
```
$ docker build -t spark-rm:test --build-arg UID=501 dev/create-release/spark-rm
...
Successfully tagged spark-rm:test
```
Closes#25578 from dongjoon-hyun/SPARK-28868.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to clean up the commit logs by removing the comments of our PR template.
### Why are the changes needed?
Apache Spark PR template has comments. Sometime we forget to clean up them because GitHub hides them nicely. It would be great if we clean up this. Otherwise, this makes the commit logs too verbose. (There are a few commits already.)
### Does this PR introduce any user-facing change?
No. (only for committers)
### How was this patch tested?
Manually with Python2/Python3.
Closes#25564 from dongjoon-hyun/SPARK-28857.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
### What changes were proposed in this pull request?
Spark uses Netty 4 directly, but also includes Netty 3 only because transitive dependencies do. The dependencies (Hadoop HDFS, Zookeeper, Avro) don't seem to need this dependency as used in Spark. I think we can forcibly remove it to slim down the dependencies.
Previous attempts were blocked by its usage in Flume, but that dependency has gone away.
https://github.com/apache/spark/pull/15436
### Why are the changes needed?
Mostly to reduce the transitive dependency size and complexity a little bit and avoid triggering spurious security alerts on Netty 3.x usage.
### Does this PR introduce any user-facing change?
No
### How was this patch tested?
Existing tests
Closes#25544 from srowen/SPARK-17875.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
Update Jersey to 2.27+, ideally 2.29, for possible JDK 11 fixes.
## How was this patch tested?
Existing tests.
Closes#25455 from srowen/SPARK-28737.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
### What changes were proposed in this pull request?
This PR aims to upgrade `Janino` from `3.0.13` to `3.0.15` in order to bring the bug fixes. Please note that `3.1.0` is a major refactoring instead of bug fixes. We had better use `3.0.15` and wait for the stabler 3.1.x.
### Why are the changes needed?
This brings the following bug fixes.
**3.0.15 (2019-07-28)**
- Fix overloaded single static method import
**3.0.14 (2019-07-05)**
- Conflict in sbt-assembly
- Overloaded static on-demand imported methods cause a CompileException: Ambiguous static method import
- Handle overloaded static on-demand imports
- Major refactoring of the Java 8 and Java 9 retrofit mechanism
- Added tests for "JLS8 8.6 Instance Initializers" and "JLS8 8.7 Static Initializers"
- Local variables in instance initializers don't work
- Provide an option to keep generated code files
- Added compile error handler and warning handler to ICompiler
### Does this PR introduce any user-facing change?
No.
### How was this patch tested?
Pass the Jenkins with the existing tests.
Closes#25474 from dongjoon-hyun/SPARK-28758.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
Update Jackson databind to the latest version for some latest changes.
## How was this patch tested?
Pass the Jenkins.
Closes#25451 from Fokko/fd-bump-jackson-databind.
Lead-authored-by: Fokko Driesprong <fokko@apache.org>
Co-authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
R version 3.6.1 (Action of the Toes) was released on 2019-07-05. This PR aims to upgrade R installation for AppVeyor CI environment.
## How was this patch tested?
Pass the AppVeyor CI.
Closes#25441 from dongjoon-hyun/SPARK-28720.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
## What changes were proposed in this pull request?
I made an audit and update all dev scripts to support python3. (except `merge_spark_pr.py` which already updated)
## How was this patch tested?
Manual.
Closes#25289 from WeichenXu123/dev_py3.
Authored-by: WeichenXu <weichen.xu@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
This PR aims to improve the `merge-spark-pr` script in the following two ways.
1. `[WIP]` is useful when we show that a PR is not ready for merge. Apache Spark allows merging `WIP` PRs. However, sometime, we accidentally forgot to clean up the title for the completed PRs. We had better warn once more during merging stage and get a confirmation from the committers.
2. We have two kinds of PR titles in terms of the ending period. This PR aims to remove the trailing `dot` since the shorter is the better in the commit title. Also, the PR titles without the trailing `dot` is dominant in the Apache Spark commit logs.
```
$ git log --oneline | grep '[.]$' | wc -l
4090
$ git log --oneline | grep '[^.]$' | wc -l
20747
```
## How was this patch tested?
Manual.
```
$ dev/merge_spark_pr.py
git rev-parse --abbrev-ref HEAD
Which pull request would you like to merge? (e.g. 34): 25157
The PR title has `[WIP]`:
[WIP][SPARK-28396][SQL] Add PathCatalog for data source V2
Continue? (y/n):
```
```
$ dev/merge_spark_pr.py
git rev-parse --abbrev-ref HEAD
Which pull request would you like to merge? (e.g. 34): 25304
I've re-written the title as follows to match the standard format:
Original: [SPARK-28570][CORE][SHUFFLE] Make UnsafeShuffleWriter use the new API.
Modified: [SPARK-28570][CORE][SHUFFLE] Make UnsafeShuffleWriter use the new API
Would you like to use the modified title? (y/n):
```
Closes#25356 from dongjoon-hyun/SPARK-28616.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
CRAN repo changed the key and it causes our release script failure. This is a release blocker for Apache Spark 2.4.4 and 3.0.0.
- https://cran.r-project.org/bin/linux/ubuntu/README.html
```
Err:1 https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ InRelease
The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9
...
W: GPG error: https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ InRelease: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 51716619E084DAB9
E: The repository 'https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ InRelease' is not signed.
```
Note that they are reusing `cran35` for R 3.6 although they changed the key.
```
Even though R has moved to version 3.6, for compatibility the sources.list entry still uses the cran3.5 designation.
```
This PR aims to recover the docker image generation first. We will verify the R doc generation in a separate JIRA and PR.
## How was this patch tested?
Manual. After `docker-build.log`, it should continue to the next stage, `Building v3.0.0-rc1`.
```
$ dev/create-release/do-release-docker.sh -d /tmp/spark-3.0.0 -n -s docs
...
Log file: docker-build.log
Building v3.0.0-rc1; output will be at /tmp/spark-3.0.0/output
```
Closes#25339 from dongjoon-hyun/SPARK-28606.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
## What changes were proposed in this pull request?
Prior to this change, in an executor, on each heartbeat, memory metrics are polled and sent in the heartbeat. The heartbeat interval is 10s by default. With this change, in an executor, memory metrics can optionally be polled in a separate poller at a shorter interval.
For each executor, we use a map of (stageId, stageAttemptId) to (count of running tasks, executor metric peaks) to track what stages are active as well as the per-stage memory metric peaks. When polling the executor memory metrics, we attribute the memory to the active stage(s), and update the peaks. In a heartbeat, we send the per-stage peaks (for stages active at that time), and then reset the peaks. The semantics would be that the per-stage peaks sent in each heartbeat are the peaks since the last heartbeat.
We also keep a map of taskId to memory metric peaks. This tracks the metric peaks during the lifetime of the task. The polling thread updates this as well. At end of a task, we send the peak metric values in the task result. In case of task failure, we send the peak metric values in the `TaskFailedReason`.
We continue to do the stage-level aggregation in the EventLoggingListener.
For the driver, we still only poll on heartbeats. What the driver sends will be the current values of the metrics in the driver at the time of the heartbeat. This is semantically the same as before.
## How was this patch tested?
Unit tests. Manually tested applications on an actual system and checked the event logs; the metrics appear in the SparkListenerTaskEnd and SparkListenerStageExecutorMetrics events.
Closes#23767 from wypoon/wypoon_SPARK-26329.
Authored-by: Wing Yew Poon <wypoon@cloudera.com>
Signed-off-by: Imran Rashid <irashid@cloudera.com>
## What changes were proposed in this pull request?
This PR aims to update `zstd-jni` library to bring the latest improvement and bug fixes in `1.4.1` and `1.4.2`.
- https://github.com/facebook/zstd/releases/tag/v1.4.1 (4.5 ~ 11.8% performance improvement from v1.4.0 and bug fixes)
- https://github.com/facebook/zstd/releases/tag/v1.4.2 (bug fixes)
## How was this patch tested?
Pass the Jenkins.
Closes#25275 from dongjoon-hyun/SPARK-28544.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
Unlike the other versions, `x.x.0-SNAPSHOT` causes `x.x.-1`. Although this will not happen in the tags (there is no `SNAPSHOT` postfix), we had better fix this.
```
$ dev/create-release/do-release-docker.sh -d /tmp/spark-3.0.0 -n
Output directory already exists. Overwrite and continue? [y/n] y
Branch [branch-2.4]: master
Current branch version is 3.0.0-SNAPSHOT.
Release [3.0.-1]:
```
Since we already have `RELEASE_VERSION` by removing `SNAPSHOT`. This PR uses `RELEASE_VERSION` instead of `VERSION`.
```
$ dev/create-release/do-release-docker.sh -d /tmp/spark-3.0.0 -n
Branch [branch-2.4]: master
Current branch version is 3.0.0-SNAPSHOT.
Release [3.0.0]:
```
## How was this patch tested?
Manually do `dev/create-release/do-release-docker.sh -d /tmp/spark-3.0.0 -n` and see the default value of `Release`.
Closes#25254 from dongjoon-hyun/SPARK-28511.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
There are two cases when we use `dry run`.
First, when the tag already exists, we can ask `confirmation` on the existing tag name.
```
$ dev/create-release/do-release-docker.sh -d /tmp/spark-2.4.4 -n -s docs
Output directory already exists. Overwrite and continue? [y/n] y
Branch [branch-2.4]:
Current branch version is 2.4.4-SNAPSHOT.
Release [2.4.4]: 2.4.3
RC # [1]:
v2.4.3-rc1 already exists. Continue anyway [y/n]? y
This is a dry run. Please confirm the ref that will be built for testing.
Ref [v2.4.3-rc1]:
```
Second, when the tag doesn't exist, we had better ask `confirmation` on the branch name. If we do not change the default value, it will fail eventually.
```
$ dev/create-release/do-release-docker.sh -d /tmp/spark-2.4.4 -n -s docs
Branch [branch-2.4]:
Current branch version is 2.4.4-SNAPSHOT.
Release [2.4.4]:
RC # [1]:
This is a dry run. Please confirm the ref that will be built for testing.
Ref [v2.4.4-rc1]:
```
This PR improves the second case by providing the branch name instead. This helps the release testing before tagging.
## How was this patch tested?
Manually do the following and check the default value of `Ref` field.
```
$ dev/create-release/do-release-docker.sh -d /tmp/spark-2.4.4 -n -s docs
Branch [branch-2.4]:
Current branch version is 2.4.4-SNAPSHOT.
Release [2.4.4]:
RC # [1]:
This is a dry run. Please confirm the ref that will be built for testing.
Ref [branch-2.4]:
...
```
Closes#25240 from dongjoon-hyun/SPARK-28496.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
## What changes were proposed in this pull request?
This upgraded to a newer version of Pyrolite. Most updates [1] in the newer version are for dotnot. For java, it includes a bug fix to Unpickler regarding cleaning up Unpickler memo, and support of protocol 5.
After upgrading, we can remove the fix at SPARK-27629 for the bug in Unpickler.
[1] https://github.com/irmen/Pyrolite/compare/pyrolite-4.23...master
## How was this patch tested?
Manually tested on Python 3.6 in local on existing tests.
Closes#25143 from viirya/upgrade-pyrolite.
Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
`dev/merge_spark_pr.py` script always fail for some users because they have different `name` and `key`.
- https://issues.apache.org/jira/rest/api/2/user?username=yumwang
JIRA Client expects `name`, but we are using `key`. This PR fixes it.
```python
# This is JIRA client code `/usr/local/lib/python2.7/site-packages/jira/client.py`
def assign_issue(self, issue, assignee):
"""Assign an issue to a user. None will set it to unassigned. -1 will set it to Automatic.
:param issue: the issue ID or key to assign
:param assignee: the user to assign the issue to
:type issue: int or str
:type assignee: str
:rtype: bool
"""
url = self._options['server'] + \
'/rest/api/latest/issue/' + str(issue) + '/assignee'
payload = {'name': assignee}
r = self._session.put(
url, data=json.dumps(payload))
raise_on_error(r)
return True
```
## How was this patch tested?
Manual with the committer ID/password.
```python
import jira.client
asf_jira = jira.client.JIRA({'server': 'https://issues.apache.org/jira'}, basic_auth=('yourid', 'passwd'))
asf_jira.assign_issue("SPARK-28354", "q79969786") # This will raise exception.
asf_jira.assign_issue("SPARK-28354", "yumwang") # This works.
```
Closes#25120 from dongjoon-hyun/SPARK-28354.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
Mainly change logs:
### Version 3.0.13:
- Support for JDK 9/10 in Full Compiler
- The syntax elements that can have modifiers now all have sets of "is...()" methods that check for each modifier. Some also have methods "getAccess()" and/or "getAnnotations()".
- Implement "type annotations" (JLS8 9.7.4)
- Implemented parsing (but not compilation) of "modular compilation units" (JLS11 7.3).
- Replaced all "assert...Uncookable(..., Pattern messageRegex)" and "assert...Uncookable(..., String messageInfix)" method pairs with a single "assert...Uncookable(..., String messageRegex)" method.
Minor refactoring: Allowed modifiers are now checked in the Parser, not in Java.*. This saves a lot of THROWS clauses.
- Parse Type inference syntax: Type inference for generic instance creation implemented, test cases added.
- Parse MethodReference, ClassInstanceCreationReference and ArrayCreationReference
### Version 3.0.12
- Fixed: Operator "&" not defined on types "java.lang.Long" and "int"
- Major bug in JavaSourceClassLoader: When loading the second and following classes, CUs were compiled again, leading to an inconsistent class hierarchy.
- Fixed: Java 9 added "Override public final CharBuffer CharBuffer.rewind() { ..." -- leads easily to a java.lang.NoSuchMethodError
- Changed all occurences of the words "Java bytecode" to "JVM bytecode" to make clearer that the generated bytecode is for the JVMS and not suitable for, e.g. DALVIK.
http://janino-compiler.github.io/janino/changelog.html
## How was this patch tested?
Existing test
Closes#25021 from wangyum/SPARK-28221.
Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
This PR proposes to remove cloned `pyspark-coverage-site` repo.
it doesn't looks a problem in PR builder but somehow it's problematic in `spark-master-test-sbt-hadoop-2.7`.
## How was this patch tested?
Jenkins.
Closes#23729 from HyukjinKwon/followup-coverage.
Lead-authored-by: Hyukjin Kwon <gurwls223@apache.org>
Co-authored-by: shane knapp <incomplete@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
This PR aims to update `xbean-asm7-shaded` to bring [XBEAN-318](https://issues.apache.org/jira/browse/XBEAN-318) which is helpful to log the class definition reading failures.
- https://issues.apache.org/jira/projects/XBEAN/versions/12345220
## How was this patch tested?
Pass the Jenkins.
Closes#24914 from dongjoon-hyun/SPARK-28111.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
We're using an old-ish jQuery, 1.12.4, and should probably update for Spark 3 to keep up in general, but also to keep up with CVEs. In fact, we know of at least one resolved in only 3.4.0+ (https://nvd.nist.gov/vuln/detail/CVE-2019-11358). They may not affect Spark, but, if the update isn't painful, maybe worthwhile in order to make future 3.x updates easier.
jQuery 1 -> 2 doesn't sound like a breaking change, as 2.0 is supposed to maintain compatibility with 1.9+ (https://blog.jquery.com/2013/04/18/jquery-2-0-released/)
2 -> 3 has breaking changes: https://jquery.com/upgrade-guide/3.0/. It's hard to evaluate each one, but the most likely area for problems is in ajax(). However, our usage of jQuery (and plugins) is pretty simple.
Update jquery to 3.4.1; update jquery blockUI and mustache to latest
## How was this patch tested?
Manual testing of docs build (except R docs), worker/master UI, spark application UI.
Note: this really doesn't guarantee it works, as our tests can't test javascript, and this is merely anecdotal testing, although I clicked about every link I could find. There's a risk this breaks a minor part of the UI; it does seem to work fine in the main.
Closes#24843 from srowen/SPARK-28004.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
This PR aims to expose JIRA issue component types at GitHub PRs.
## How was this patch tested?
Manual.
```
$ export GITHUB_OAUTH_KEY=...
$ export JIRA_PASSWORD=...
$ export GITHUB_API_BASE='https://api.github.com/repos/your-id/spark'
$ dev/github_jira_sync.py
```
Please note that the existing script will raise the following exceptions if your repo has less than 100 PRs. This will be handled at #24874 .
```
Traceback (most recent call last):
File "dev/github_jira_sync.py", line 139, in <module>
jira_prs = get_jira_prs()
File "dev/github_jira_sync.py", line 83, in get_jira_prs
link_header = filter(lambda k: k.startswith("Link"), page.info().headers)[0]
IndexError: list index out of range
```
That is beyond the scope of this PR.
Closes#24871 from dongjoon-hyun/SPARK-28051.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
Currently, `github_jira_sync.py` assumes that there is `Link` always. However, it will fail when the number of the open PR is less than 100 (the default paging number). It will not happen in Apache Spark, but we had better fix that because it happens during review process for `github_jira_sync.py` script.
```
Traceback (most recent call last):
File "dev/github_jira_sync.py", line 139, in <module>
jira_prs = get_jira_prs()
File "dev/github_jira_sync.py", line 83, in get_jira_prs
link_header = filter(lambda k: k.startswith("Link"), page.info().headers)[0]
IndexError: list index out of range
```
## How was this patch tested?
Manually check with another repo which has small number of open PRs (< 100).
```
$ export JIRA_PASSWORD=...
$ export GITHUB_API_BASE='https://api.github.com/repos/your-id/spark'
$ dev/github_jira_sync.py
```
Closes#24874 from dongjoon-hyun/SPARK-28053.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
This is a second try of #24824.
Since Apache Spark 2.0.0, SPARK-14867 deprecated `--force` option and made it ignored. This PR cleans up the related code completely at 3.0.0.
**BEFORE (Jenkins)**
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using Maven with these arguments: -Phadoop-2.7 -Pkubernetes -Phive-thriftserver -Pkinesis-asl -Pyarn -Pspark-ganglia-lgpl -Phive -Pmesos clean package -DskipTests
WARNING: '--force' is deprecated and ignored.
...
========================================================================
Running Spark unit tests
========================================================================
[info] Running Spark tests using Maven with these arguments: -Phadoop-2.7 -Phive-thriftserver -Phive -Dtest.exclude.tags=org.apache.spark.tags.ExtendedHiveTest,org.apache.spark.tags.ExtendedYarnTest test --fail-at-end
WARNING: '--force' is deprecated and ignored.
```
**AFTER (Jenkins)**
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using Maven with these arguments: -Phadoop-2.7 -Pkubernetes -Phive-thriftserver -Pkinesis-asl -Pyarn -Pspark-ganglia-lgpl -Phive -Pmesos clean package -DskipTests
...
========================================================================
Running Spark unit tests
========================================================================
[info] Running Spark tests using Maven with these arguments: -Phadoop-2.7 -Pkubernetes -Phive-thriftserver -Pyarn -Pspark-ganglia-lgpl -Phive -Pkinesis-asl -Pmesos -Dtest.exclude.tags=org.apache.spark.tags.ExtendedHiveTest,org.apache.spark.tags.ExtendedYarnTest test --fail-at-end
```
## How was this patch tested?
Manually check the Jenkins logs.
Closes#24833 from dongjoon-hyun/SPARK-FORCE-2.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
This PR introduces the necessary Maven modules for the new [Spark Graph](https://issues.apache.org/jira/browse/SPARK-25994) feature for Spark 3.0.
* `spark-graph` is a parent module that users depend on to get all graph functionalities (Cypher and Graph Algorithms)
* `spark-graph-api` defines the [Property Graph API](https://docs.google.com/document/d/1Wxzghj0PvpOVu7XD1iA8uonRYhexwn18utdcTxtkxlI) that is being shared between Cypher and Algorithms
* `spark-cypher` contains a Cypher query engine implementation
Both, `spark-graph-api` and `spark-cypher` depend on Spark SQL.
Note, that the Maven module for Graph Algorithms is not part of this PR and will be introduced in https://issues.apache.org/jira/browse/SPARK-27302
A PoC for a running Cypher implementation can be found in this WIP PR https://github.com/apache/spark/pull/24297
## How was this patch tested?
Pass the Jenkins with all profiles and manually build and check the followings.
```
$ ls assembly/target/scala-2.12/jars/spark-cypher*
assembly/target/scala-2.12/jars/spark-cypher_2.12-3.0.0-SNAPSHOT.jar
$ ls assembly/target/scala-2.12/jars/spark-graph* | grep -v graphx
assembly/target/scala-2.12/jars/spark-graph-api_2.12-3.0.0-SNAPSHOT.jar
assembly/target/scala-2.12/jars/spark-graph_2.12-3.0.0-SNAPSHOT.jar
```
Closes#24490 from s1ck/SPARK-27300.
Lead-authored-by: Martin Junghanns <martin.junghanns@neotechnology.com>
Co-authored-by: Max Kießling <max@kopfueber.org>
Co-authored-by: Martin Junghanns <martin.junghanns@neo4j.com>
Co-authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
Since Apache Spark 2.0.0, SPARK-14867 deprecated `--force` option and made it ignored. This PR cleans up the related code completely at 3.0.0.
**BEFORE (Jenkins)**
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using Maven with these arguments: -Phadoop-2.7 -Pkubernetes -Phive-thriftserver -Pkinesis-asl -Pyarn -Pspark-ganglia-lgpl -Phive -Pmesos clean package -DskipTests
WARNING: '--force' is deprecated and ignored.
...
========================================================================
Running Spark unit tests
========================================================================
[info] Running Spark tests using Maven with these arguments: -Phadoop-2.7 -Phive-thriftserver -Phive -Dtest.exclude.tags=org.apache.spark.tags.ExtendedHiveTest,org.apache.spark.tags.ExtendedYarnTest test --fail-at-end
WARNING: '--force' is deprecated and ignored.
```
**AFTER (Jenkins)**
```
========================================================================
Building Spark
========================================================================
[info] Building Spark using Maven with these arguments: -Phadoop-2.7 -Pkubernetes -Phive-thriftserver -Pkinesis-asl -Pyarn -Pspark-ganglia-lgpl -Phive -Pmesos clean package -DskipTests
...
========================================================================
Running Spark unit tests
========================================================================
[info] Running Spark tests using Maven with these arguments: -Phadoop-2.7 -Pkubernetes -Phive-thriftserver -Pyarn -Pspark-ganglia-lgpl -Phive -Pkinesis-asl -Pmesos -Dtest.exclude.tags=org.apache.spark.tags.ExtendedHiveTest,org.apache.spark.tags.ExtendedYarnTest test --fail-at-end
```
## How was this patch tested?
Manually check the Jenkins logs.
Closes#24824 from dongjoon-hyun/SPARK-27979.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
Move to json4s version 3.6.6
Add scala-xml 1.2.0
## How was this patch tested?
Pass the Jenkins
Closes#24736 from igreenfield/master.
Authored-by: Izek Greenfield <igreenfield@axiomsl.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
This fixes CVE-2019-12086 on Databind: https://github.com/FasterXML/jackson/wiki/Jackson-Release-2.9.9
## How was this patch tested?
Existing tests
Closes#24646 from Fokko/SPARK-27757.
Authored-by: Fokko Driesprong <fokko@apache.org>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
R 3.6.0 is released 2019-04-26. This PR targets to change R version from 3.5.1 to 3.6.0 in AppVeyor.
This PR sets `R_REMOTES_NO_ERRORS_FROM_WARNINGS` to `true` to avoid the warnings below:
```
Error in strptime(xx, f, tz = tz) :
(converted from warning) unable to identify current timezone 'C':
please set environment variable 'TZ'
Error in i.p(...) :
(converted from warning) installation of package 'praise' had non-zero exit status
Calls: <Anonymous> ... with_rprofile_user -> with_envvar -> force -> force -> i.p
Execution halted
```
## How was this patch tested?
AppVeyor
Closes#24716 from HyukjinKwon/SPARK-27848.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
Use https URL for CRAN repo (and for a Scala download in a Dockerfile)
## How was this patch tested?
Existing tests.
Closes#24664 from srowen/SPARK-27794.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
Tighten up some key links to the project and download pages to use HTTPS
## How was this patch tested?
N/A
Closes#24665 from srowen/HTTPSURLs.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
This PR excludes 'hive-thriftserver' in modules to test for hadoop3.2 for now as well
## How was this patch tested?
Manually tested via `run-tests.py`
Closes#24644 from HyukjinKwon/SPARK-27402.
Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
## What changes were proposed in this pull request?
This PR aims to update `zstd-jni` library to `1.4.0-1` which improves the `level 1 compression speed` performance by 6% in most scenarios. The following is the full release note.
- https://github.com/facebook/zstd/releases/tag/v1.4.0
## How was this patch tested?
Pass the Jenkins.
Closes#24632 from dongjoon-hyun/SPARK-27755.
Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
