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15858 commits

Author SHA1 Message Date
Zheng RuiFeng e88476c8c6 [SPARK-14514][DOC] Add python example for VectorSlicer
## What changes were proposed in this pull request?
Add the missing python example for VectorSlicer

## How was this patch tested?
manual tests

Author: Zheng RuiFeng <ruifengz@foxmail.com>

Closes #12282 from zhengruifeng/vecslicer_pe.
2016-04-26 14:38:29 -07:00
Dongjoon Hyun e4f3eec5b7 [SPARK-14907][MLLIB] Use repartition in GLMRegressionModel.save
## What changes were proposed in this pull request?

This PR changes `GLMRegressionModel.save` function like the following code that is similar to other algorithms' parquet write.
```
- val dataRDD: DataFrame = sc.parallelize(Seq(data), 1).toDF()
- // TODO: repartition with 1 partition after SPARK-5532 gets fixed
- dataRDD.write.parquet(Loader.dataPath(path))
+ sqlContext.createDataFrame(Seq(data)).repartition(1).write.parquet(Loader.dataPath(path))
```

## How was this patch tested?

Manual.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #12676 from dongjoon-hyun/SPARK-14907.
2016-04-26 13:58:29 -07:00
Davies Liu 7131b03bcf [SPARK-14853] [SQL] Support LeftSemi/LeftAnti in SortMergeJoinExec
## What changes were proposed in this pull request?

This PR update SortMergeJoinExec to support LeftSemi/LeftAnti, so it could support all the join types, same as other three join implementations: BroadcastHashJoinExec, ShuffledHashJoinExec,and BroadcastNestedLoopJoinExec.

This PR also simplify the join selection in SparkStrategy.

## How was this patch tested?

Added new tests.

Author: Davies Liu <davies@databricks.com>

Closes #12668 from davies/smj_semi.
2016-04-26 12:43:47 -07:00
Joseph K. Bradley 89f082de0e [SPARK-14903][SPARK-14071][ML][PYTHON] Revert : MLWritable.write property
## What changes were proposed in this pull request?

SPARK-14071 changed MLWritable.write to be a property.  This reverts that change since there was not a good way to make MLReadable.read appear to be a property.

## How was this patch tested?

existing unit tests

Author: Joseph K. Bradley <joseph@databricks.com>

Closes #12671 from jkbradley/revert-MLWritable-write-py.
2016-04-26 12:00:57 -07:00
Yanbo Liang 302a186869 [SPARK-11559][MLLIB] Make runs no effect in mllib.KMeans
## What changes were proposed in this pull request?
We deprecated  ```runs``` of mllib.KMeans in Spark 1.6 (SPARK-11358). In 2.0, we will make it no effect (with warning messages). We did not remove ```setRuns/getRuns``` for better binary compatibility.
This PR change `runs` which are appeared at the public API. Usage inside of ```KMeans.runAlgorithm()``` will be resolved at #10806.

## How was this patch tested?
Existing unit tests.

cc jkbradley

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #12608 from yanboliang/spark-11559.
2016-04-26 11:55:21 -07:00
Andrew Or 2a3d39f48b [MINOR] Follow-up to #12625
## What changes were proposed in this pull request?

That patch mistakenly widened the visibility from `private[x]` to `protected[x]`. This patch reverts those changes.

Author: Andrew Or <andrew@databricks.com>

Closes #12686 from andrewor14/visibility.
2016-04-26 11:08:08 -07:00
Reynold Xin 5cb03220a0 [SPARK-14912][SQL] Propagate data source options to Hadoop configuration
## What changes were proposed in this pull request?
We currently have no way for users to propagate options to the underlying library that rely in Hadoop configurations to work. For example, there are various options in parquet-mr that users might want to set, but the data source API does not expose a per-job way to set it. This patch propagates the user-specified options also into Hadoop Configuration.

## How was this patch tested?
Used a mock data source implementation to test both the read path and the write path.

Author: Reynold Xin <rxin@databricks.com>

Closes #12688 from rxin/SPARK-14912.
2016-04-26 10:58:56 -07:00
Yanbo Liang 92f66331b4 [SPARK-14313][ML][SPARKR] AFTSurvivalRegression model persistence in SparkR
## What changes were proposed in this pull request?
```AFTSurvivalRegressionModel``` supports ```save/load``` in SparkR.

## How was this patch tested?
Unit tests.

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #12685 from yanboliang/spark-14313.
2016-04-26 10:30:24 -07:00
gatorsmile 162cf02efa [SPARK-14910][SQL] Native DDL Command Support for Describe Function in Non-identifier Format
#### What changes were proposed in this pull request?
The existing `Describe Function` only support the function name in `identifier`. This is different from what Hive behaves. That is why many test cases `udf_abc` in `HiveCompatibilitySuite` are not using our native DDL support. For example,
- udf_not.q
- udf_bitwise_not.q

This PR is to resolve the issues. Now, we can support the command of `Describe Function` whose function names are in the following format:
- `qualifiedName` (e.g., `db.func1`)
- `STRING` (e.g., `'func1'`)
- `comparisonOperator` (e.g,. `<`)
- `arithmeticOperator` (e.g., `+`)
- `predicateOperator` (e.g., `or`)

Note, before this PR, we only have a native command support when the function name is in the format of `qualifiedName`.
#### How was this patch tested?
Added test cases in `DDLSuite.scala`. Also manually verified all the related test cases in `HiveCompatibilitySuite` passed.

Author: gatorsmile <gatorsmile@gmail.com>

Closes #12679 from gatorsmile/descFunction.
2016-04-26 19:29:34 +02:00
Jacek Laskowski b208229ba1 [MINOR][DOCS] Minor typo fixes
## What changes were proposed in this pull request?

Minor typo fixes (too minor to deserve separate a JIRA)

## How was this patch tested?

local build

Author: Jacek Laskowski <jacek@japila.pl>

Closes #12469 from jaceklaskowski/minor-typo-fixes.
2016-04-26 11:51:12 +01:00
Azeem Jiva de6e633420 [SPARK-14756][CORE] Use parseLong instead of valueOf
## What changes were proposed in this pull request?

Use Long.parseLong which returns a primative.
Use a series of appends() reduces the creation of an extra StringBuilder type

## How was this patch tested?

Unit tests

Author: Azeem Jiva <azeemj@gmail.com>

Closes #12520 from javawithjiva/minor.
2016-04-26 11:49:04 +01:00
Subhobrata Dey f70e4fff0e [SPARK-14889][SPARK CORE] scala.MatchError: NONE (of class scala.Enumeration) when spark.scheduler.mode=NONE
## What changes were proposed in this pull request?

Handling exception for the below mentioned issue

```
➜  spark git:(master) ✗ ./bin/spark-shell -c spark.scheduler.mode=NONE
16/04/25 09:15:00 ERROR SparkContext: Error initializing SparkContext.
scala.MatchError: NONE (of class scala.Enumeration$Val)
	at org.apache.spark.scheduler.Pool.<init>(Pool.scala:53)
	at org.apache.spark.scheduler.TaskSchedulerImpl.initialize(TaskSchedulerImpl.scala:131)
	at org.apache.spark.SparkContext$.org$apache$spark$SparkContext$$createTaskScheduler(SparkContext.scala:2352)
	at org.apache.spark.SparkContext.<init>(SparkContext.scala:492)
```

The exception now looks like

```
java.lang.RuntimeException: The scheduler mode NONE is not supported by Spark.
```

## How was this patch tested?

manual tests

Author: Subhobrata Dey <sbcd90@gmail.com>

Closes #12666 from sbcd90/schedulerModeIssue.
2016-04-26 11:46:24 +01:00
Michael Gummelt 6a7ba1ff74 Fix dynamic allocation docs to address cached data.
## What changes were proposed in this pull request?

Documentation changes

## How was this patch tested?

No tests

Author: Michael Gummelt <mgummelt@mesosphere.io>

Closes #12664 from mgummelt/fix-dynamic-docs.
2016-04-26 09:31:53 +01:00
BenFradet 2a5c930790 [SPARK-13962][ML] spark.ml Evaluators should support other numeric types for label
## What changes were proposed in this pull request?

Made BinaryClassificationEvaluator, MulticlassClassificationEvaluator and RegressionEvaluator accept all numeric types for label

## How was this patch tested?

Unit tests

Author: BenFradet <benjamin.fradet@gmail.com>

Closes #12500 from BenFradet/SPARK-13962.
2016-04-26 08:55:50 +02:00
Reynold Xin f870921811 [HOTFIX] Fix the problem for real this time. 2016-04-25 21:38:01 -07:00
Reynold Xin d2614eaadb [HOTFIX] Fix compilation 2016-04-25 21:24:06 -07:00
Andrew Or 18c2c92580 [SPARK-14861][SQL] Replace internal usages of SQLContext with SparkSession
## What changes were proposed in this pull request?

In Spark 2.0, `SparkSession` is the new thing. Internally we should stop using `SQLContext` everywhere since that's supposed to be not the main user-facing API anymore.

In this patch I took care to not break any public APIs. The one place that's suspect is `o.a.s.ml.source.libsvm.DefaultSource`, but according to mengxr it's not supposed to be public so it's OK to change the underlying `FileFormat` trait.

**Reviewers**: This is a big patch that may be difficult to review but the changes are actually really straightforward. If you prefer I can break it up into a few smaller patches, but it will delay the progress of this issue a little.

## How was this patch tested?

No change in functionality intended.

Author: Andrew Or <andrew@databricks.com>

Closes #12625 from andrewor14/spark-session-refactor.
2016-04-25 20:54:31 -07:00
Andrew Or fa3c06987e [SPARK-14904][SQL] Put removed HiveContext in compatibility module
## What changes were proposed in this pull request?
This is for users who can't upgrade and need to continue to use HiveContext.

## How was this patch tested?
Added some basic tests for sanity check.

This is based on #12672 and closes #12672.

Author: Andrew Or <andrew@databricks.com>
Author: Reynold Xin <rxin@databricks.com>

Closes #12682 from rxin/add-back-hive-context.
2016-04-25 20:53:16 -07:00
Sameer Agarwal c71c6853fc [SPARK-14870][SQL][FOLLOW-UP] Move decimalDataWithNulls in DataFrameAggregateSuite
## What changes were proposed in this pull request?

Minor followup to https://github.com/apache/spark/pull/12651

## How was this patch tested?

Test-only change

Author: Sameer Agarwal <sameer@databricks.com>

Closes #12674 from sameeragarwal/tpcds-fix-2.
2016-04-25 18:22:06 -07:00
Andrew Or cfa64882fc [SPARK-14902][SQL] Expose RuntimeConfig in SparkSession
## What changes were proposed in this pull request?

`RuntimeConfig` is the new user-facing API in 2.0 added in #11378. Until now, however, it's been dead code. This patch uses `RuntimeConfig` in `SessionState` and exposes that through the `SparkSession`.

## How was this patch tested?

New test in `SQLContextSuite`.

Author: Andrew Or <andrew@databricks.com>

Closes #12669 from andrewor14/use-runtime-conf.
2016-04-25 17:52:25 -07:00
Reynold Xin f36c9c8379 [SPARK-14888][SQL] UnresolvedFunction should use FunctionIdentifier
## What changes were proposed in this pull request?
This patch changes UnresolvedFunction and UnresolvedGenerator to use a FunctionIdentifier rather than just a String for function name. Also changed SessionCatalog to accept FunctionIdentifier in lookupFunction.

## How was this patch tested?
Updated related unit tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12659 from rxin/SPARK-14888.
2016-04-25 16:20:57 -07:00
Andrew Or 34336b6250 [SPARK-14828][SQL] Start SparkSession in REPL instead of SQLContext
## What changes were proposed in this pull request?

```
Spark context available as 'sc' (master = local[*], app id = local-1461283768192).
Spark session available as 'spark'.
Welcome to
      ____              __
     / __/__  ___ _____/ /__
    _\ \/ _ \/ _ `/ __/  '_/
   /___/ .__/\_,_/_/ /_/\_\   version 2.0.0-SNAPSHOT
      /_/

Using Scala version 2.11.8 (Java HotSpot(TM) 64-Bit Server VM, Java 1.7.0_51)
Type in expressions to have them evaluated.
Type :help for more information.

scala> sql("SHOW TABLES").collect()
16/04/21 17:09:39 WARN ObjectStore: Version information not found in metastore. hive.metastore.schema.verification is not enabled so recording the schema version 1.2.0
16/04/21 17:09:39 WARN ObjectStore: Failed to get database default, returning NoSuchObjectException
res0: Array[org.apache.spark.sql.Row] = Array([src,false])

scala> sql("SHOW TABLES").collect()
res1: Array[org.apache.spark.sql.Row] = Array([src,false])

scala> spark.createDataFrame(Seq((1, 1), (2, 2), (3, 3)))
res2: org.apache.spark.sql.DataFrame = [_1: int, _2: int]
```

Hive things are loaded lazily.

## How was this patch tested?

Manual.

Author: Andrew Or <andrew@databricks.com>

Closes #12589 from andrewor14/spark-session-repl.
2016-04-25 15:30:18 -07:00
Yanbo Liang 9cb3ba1013 [SPARK-14312][ML][SPARKR] NaiveBayes model persistence in SparkR
## What changes were proposed in this pull request?
SparkR ```NaiveBayesModel``` supports ```save/load``` by the following API:
```
df <- createDataFrame(sqlContext, infert)
model <- naiveBayes(education ~ ., df, laplace = 0)
ml.save(model, path)
model2 <- ml.load(path)
```

## How was this patch tested?
Add unit tests.

cc mengxr

Author: Yanbo Liang <ybliang8@gmail.com>

Closes #12573 from yanboliang/spark-14312.
2016-04-25 14:08:41 -07:00
gatorsmile 0c47e274ab [SPARK-13739][SQL] Push Predicate Through Window
#### What changes were proposed in this pull request?

For performance, predicates can be pushed through Window if and only if the following conditions are satisfied:
 1. All the expressions are part of window partitioning key. The expressions can be compound.
 2. Deterministic

#### How was this patch tested?

TODO:
- [X]  DSL needs to be modified for window
- [X] more tests will be added.

Author: gatorsmile <gatorsmile@gmail.com>
Author: xiaoli <lixiao1983@gmail.com>
Author: Xiao Li <xiaoli@Xiaos-MacBook-Pro.local>

Closes #11635 from gatorsmile/pushPredicateThroughWindow.
2016-04-25 22:32:34 +02:00
Andrew Or 3c5e65c339 [SPARK-14721][SQL] Remove HiveContext (part 2)
## What changes were proposed in this pull request?

This removes the class `HiveContext` itself along with all code usages associated with it. The bulk of the work was already done in #12485. This is mainly just code cleanup and actually removing the class.

Note: A couple of things will break after this patch. These will be fixed separately.
- the python HiveContext
- all the documentation / comments referencing HiveContext
- there will be no more HiveContext in the REPL (fixed by #12589)

## How was this patch tested?

No change in functionality.

Author: Andrew Or <andrew@databricks.com>

Closes #12585 from andrewor14/delete-hive-context.
2016-04-25 13:23:05 -07:00
Lianhui Wang 6bfe42a3be [SPARK-14731][shuffle]Revert SPARK-12130 to make 2.0 shuffle service compatible with 1.x
## What changes were proposed in this pull request?
SPARK-12130 make 2.0 shuffle service incompatible with 1.x. So from discussion: [http://apache-spark-developers-list.1001551.n3.nabble.com/YARN-Shuffle-service-and-its-compatibility-td17222.html](url) we should maintain compatibility between Spark 1.x and Spark 2.x's shuffle service.
I put string comparison into executor's register at first avoid string comparison in getBlockData every time.

## How was this patch tested?
N/A

Author: Lianhui Wang <lianhuiwang09@gmail.com>

Closes #12568 from lianhuiwang/SPARK-14731.
2016-04-25 12:33:32 -07:00
Yanbo Liang 425f691646 [SPARK-10574][ML][MLLIB] HashingTF supports MurmurHash3
## What changes were proposed in this pull request?
As the discussion at [SPARK-10574](https://issues.apache.org/jira/browse/SPARK-10574), ```HashingTF``` should support MurmurHash3 and make it as the default hash algorithm. We should also expose set/get API for ```hashAlgorithm```, then users can choose the hash method.

Note: The problem that ```mllib.feature.HashingTF``` behaves differently between Scala/Java and Python will be resolved in the followup work.

## How was this patch tested?
unit tests.

cc jkbradley MLnick

Author: Yanbo Liang <ybliang8@gmail.com>
Author: Joseph K. Bradley <joseph@databricks.com>

Closes #12498 from yanboliang/spark-10574.
2016-04-25 12:08:43 -07:00
gatorsmile 88e54218d5 [SPARK-14892][SQL][TEST] Disable the HiveCompatibilitySuite test case for INPUTDRIVER and OUTPUTDRIVER.
#### What changes were proposed in this pull request?
Disable the test case involving INPUTDRIVER and OUTPUTDRIVER, which are not supported

#### How was this patch tested?
N/A

Author: gatorsmile <gatorsmile@gmail.com>

Closes #12662 from gatorsmile/disableInOutDriver.
2016-04-25 12:04:16 -07:00
Joseph K. Bradley c7758ba384 [MINOR][ML][PYTHON][DOC] Remove use of JavaMLWriter/Reader in public Python API docs
## What changes were proposed in this pull request?

Removed instances of JavaMLWriter, JavaMLReader appearing in public Python API docs

## How was this patch tested?

n/a

Author: Joseph K. Bradley <joseph@databricks.com>

Closes #12542 from jkbradley/javamlwriter-doc.
2016-04-25 11:02:32 -07:00
wm624@hotmail.com b50e2eca93 [SPARK-14433][PYSPARK][ML] PySpark ml GaussianMixture
## What changes were proposed in this pull request?

Add Python API in ML for GaussianMixture

## How was this patch tested?

(Please explain how this patch was tested. E.g. unit tests, integration tests, manual tests)

Add doctest and test cases are the same as mllib Python tests
./dev/lint-python
PEP8 checks passed.
rm -rf _build/*
pydoc checks passed.

./python/run-tests --python-executables=python2.7 --modules=pyspark-ml
Running PySpark tests. Output is in /Users/mwang/spark_ws_0904/python/unit-tests.log
Will test against the following Python executables: ['python2.7']
Will test the following Python modules: ['pyspark-ml']
Finished test(python2.7): pyspark.ml.evaluation (18s)
Finished test(python2.7): pyspark.ml.clustering (40s)
Finished test(python2.7): pyspark.ml.classification (49s)
Finished test(python2.7): pyspark.ml.recommendation (44s)
Finished test(python2.7): pyspark.ml.feature (64s)
Finished test(python2.7): pyspark.ml.regression (45s)
Finished test(python2.7): pyspark.ml.tuning (30s)
Finished test(python2.7): pyspark.ml.tests (56s)
Tests passed in 106 seconds

Author: wm624@hotmail.com <wm624@hotmail.com>

Closes #12402 from wangmiao1981/gmm.
2016-04-25 10:48:15 -07:00
Marcelo Vanzin a680562a6f [SPARK-14744][EXAMPLES] Clean up examples packaging, remove outdated examples.
First, make all dependencies in the examples module provided, and explicitly
list a couple of ones that somehow are promoted to compile by maven. This
means that to run streaming examples, the streaming connector package needs
to be provided to run-examples using --packages or --jars, just like regular
apps.

Also, remove a couple of outdated examples. HBase has had Spark bindings for
a while and is even including them in the HBase distribution in the next
version, making the examples obsolete. The same applies to Cassandra, which
seems to have a proper Spark binding library already.

I just tested the build, which passes, and ran SparkPi. The examples jars
directory now has only two jars:

```
$ ls -1 examples/target/scala-2.11/jars/
scopt_2.11-3.3.0.jar
spark-examples_2.11-2.0.0-SNAPSHOT.jar
```

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #12544 from vanzin/SPARK-14744.
2016-04-25 10:20:51 -07:00
Jason Lee bfda099913 [SPARK-14768][ML][PYSPARK] removed expectedType from Param __init__()
## What changes were proposed in this pull request?
Removed expectedType arg from PySpark Param __init__, as suggested by the JIRA.

## How was this patch tested?
Manually looked through all places that use Param. Compiled and ran all ML PySpark test cases before and after the fix.

Author: Jason Lee <cjlee@us.ibm.com>

Closes #12581 from jasoncl/SPARK-14768.
2016-04-25 15:32:11 +02:00
Cheng Lian e66afd5c66 [SPARK-14875][SQL] Makes OutputWriterFactory.newInstance public
## What changes were proposed in this pull request?

This method was accidentally made `private[sql]` in Spark 2.0. This PR makes it public again, since 3rd party data sources like spark-avro depend on it.

## How was this patch tested?

N/A

Author: Cheng Lian <lian@databricks.com>

Closes #12652 from liancheng/spark-14875.
2016-04-25 20:42:49 +08:00
Peter Ableda cef77d1f68 [SPARK-14636] Add minimum memory checks for drivers and executors
## What changes were proposed in this pull request?

Implement the same memory size validations for the StaticMemoryManager (Legacy) as the UnifiedMemoryManager has.

## How was this patch tested?

Manual tests were done in CDH cluster.

Test with small executor memory:
`
spark-submit --class org.apache.spark.examples.SparkPi --deploy-mode client --master yarn --executor-memory 15m --conf spark.memory.useLegacyMode=true /opt/cloudera/parcels/CDH/lib/spark/examples/lib/spark-examples*.jar 10
`

Exception thrown:
```
ERROR spark.SparkContext: Error initializing SparkContext.
java.lang.IllegalArgumentException: Executor memory 15728640 must be at least 471859200. Please increase executor memory using the --executor-memory option or spark.executor.memory in Spark configuration.
	at org.apache.spark.memory.StaticMemoryManager$.org$apache$spark$memory$StaticMemoryManager$$getMaxExecutionMemory(StaticMemoryManager.scala:127)
	at org.apache.spark.memory.StaticMemoryManager.<init>(StaticMemoryManager.scala:46)
	at org.apache.spark.SparkEnv$.create(SparkEnv.scala:352)
	at org.apache.spark.SparkEnv$.createDriverEnv(SparkEnv.scala:193)
	at org.apache.spark.SparkContext.createSparkEnv(SparkContext.scala:289)
	at org.apache.spark.SparkContext.<init>(SparkContext.scala:462)
	at org.apache.spark.examples.SparkPi$.main(SparkPi.scala:29)
	at org.apache.spark.examples.SparkPi.main(SparkPi.scala)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:731)
	at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:181)
	at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:206)
	at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:121)
	at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
```

Author: Peter Ableda <peter.ableda@cloudera.com>

Closes #12395 from peterableda/SPARK-14636.
2016-04-25 10:42:49 +02:00
Zheng RuiFeng e6f954a579 [SPARK-14758][ML] Add checking for StepSize and Tol
## What changes were proposed in this pull request?
add the checking for StepSize and Tol in sharedParams

## How was this patch tested?
Unit tests

Author: Zheng RuiFeng <ruifengz@foxmail.com>

Closes #12530 from zhengruifeng/ml_args_checking.
2016-04-25 10:30:55 +02:00
Eric Liang 761fc46c70 [SPARK-14790] Always run scalastyle on sbt compile and test
## What changes were proposed in this pull request?

Sbt compile and test should also run scalastyle. This makes it less likely you forget to run scalastyle and fail in jenkins. Scalastyle results are cached for efficiency.

This patch was originally written by ahirreddy; I just fixed it up to work with scalastyle 0.8.0.

## How was this patch tested?

Tested manually with `build/sbt package`.

Author: Eric Liang <ekl@databricks.com>

Closes #12555 from ericl/scalastyle.
2016-04-25 00:33:51 -07:00
Sameer Agarwal cbdcd4edab [SPARK-14870] [SQL] Fix NPE in TPCDS q14a
## What changes were proposed in this pull request?

This PR fixes a bug in `TungstenAggregate` that manifests while aggregating by keys over nullable `BigDecimal` columns. This causes a null pointer exception while executing TPCDS q14a.

## How was this patch tested?

1. Added regression test in `DataFrameAggregateSuite`.
2. Verified that TPCDS q14a works

Author: Sameer Agarwal <sameer@databricks.com>

Closes #12651 from sameeragarwal/tpcds-fix.
2016-04-24 22:52:50 -07:00
felixcheung c752b6c5ec [SPARK-14881] [PYTHON] [SPARKR] pyspark and sparkR shell default log level should match spark-shell/Scala
## What changes were proposed in this pull request?

Change default logging to WARN for pyspark shell and sparkR shell for a much cleaner environment.

## How was this patch tested?

Manually running pyspark and sparkR shell

Author: felixcheung <felixcheung_m@hotmail.com>

Closes #12648 from felixcheung/pylogging.
2016-04-24 22:51:18 -07:00
Dongjoon Hyun 6ab4d9e0c7 [SPARK-14883][DOCS] Fix wrong R examples and make them up-to-date
## What changes were proposed in this pull request?

This issue aims to fix some errors in R examples and make them up-to-date in docs and example modules.

- Remove the wrong usage of `map`. We need to use `lapply` in `sparkR` if needed. However, `lapply` is private so far. The corrected example will be added later.
- Fix the wrong example in Section `Generic Load/Save Functions` of `docs/sql-programming-guide.md` for consistency
- Fix datatypes in `sparkr.md`.
- Update a data result in `sparkr.md`.
- Replace deprecated functions to remove warnings: jsonFile -> read.json, parquetFile -> read.parquet
- Use up-to-date R-like functions: loadDF -> read.df, saveDF -> write.df, saveAsParquetFile -> write.parquet
- Replace `SparkR DataFrame` with `SparkDataFrame` in `dataframe.R` and `data-manipulation.R`.
- Other minor syntax fixes and a typo.

## How was this patch tested?

Manual.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #12649 from dongjoon-hyun/SPARK-14883.
2016-04-24 22:10:27 -07:00
Yin Huai 35319d3264 [SPARK-14885][SQL] When creating a CatalogColumn, we should use the catalogString of a DataType object.
## What changes were proposed in this pull request?

Right now, the data type field of a CatalogColumn is using the string representation. When we create this string from a DataType object, there are places where we use simpleString instead of catalogString. Although catalogString is the same as simpleString right now, it is still good to use catalogString. So, we will not silently introduce issues when we change the semantic of simpleString or the implementation of catalogString.

## How was this patch tested?
Existing tests.

Author: Yin Huai <yhuai@databricks.com>

Closes #12654 from yhuai/useCatalogString.
2016-04-24 20:48:01 -07:00
Dongjoon Hyun d34d650378 [SPARK-14868][BUILD] Enable NewLineAtEofChecker in checkstyle and fix lint-java errors
## What changes were proposed in this pull request?

Spark uses `NewLineAtEofChecker` rule in Scala by ScalaStyle. And, most Java code also comply with the rule. This PR aims to enforce the same rule `NewlineAtEndOfFile` by CheckStyle explicitly. Also, this fixes lint-java errors since SPARK-14465. The followings are the items.

- Adds a new line at the end of the files (19 files)
- Fixes 25 lint-java errors (12 RedundantModifier, 6 **ArrayTypeStyle**, 2 LineLength, 2 UnusedImports, 2 RegexpSingleline, 1 ModifierOrder)

## How was this patch tested?

After the Jenkins test succeeds, `dev/lint-java` should pass. (Currently, Jenkins dose not run lint-java.)
```bash
$ dev/lint-java
Using `mvn` from path: /usr/local/bin/mvn
Checkstyle checks passed.
```

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #12632 from dongjoon-hyun/SPARK-14868.
2016-04-24 20:40:03 -07:00
Reynold Xin d0ca5797a8 [SPARK-14876][SQL] SparkSession should be case insensitive by default
## What changes were proposed in this pull request?
This patch changes SparkSession to be case insensitive by default, in order to match other database systems.

## How was this patch tested?
N/A - I'm sure some tests will fail and I will need to fix those.

Author: Reynold Xin <rxin@databricks.com>

Closes #12643 from rxin/SPARK-14876.
2016-04-24 19:38:21 -07:00
Reynold Xin 0c8e5332ff Disable flaky script transformation test 2016-04-24 12:54:56 -07:00
jliwork f0f1a8afde [SPARK-14548][SQL] Support not greater than and not less than operator in Spark SQL
!< means not less than which is equivalent to >=
!> means not greater than which is equivalent to <=

I'd to create a PR to support these two operators.

I've added new test cases in: DataFrameSuite, ExpressionParserSuite, JDBCSuite, PlanParserSuite, SQLQuerySuite

dilipbiswal viirya gatorsmile

Author: jliwork <jiali@us.ibm.com>

Closes #12316 from jliwork/SPARK-14548.
2016-04-24 11:22:06 -07:00
gatorsmile 337289d712 [SPARK-14691][SQL] Simplify and Unify Error Generation for Unsupported Alter Table DDL
#### What changes were proposed in this pull request?
So far, we are capturing each unsupported Alter Table in separate visit functions. They should be unified and issue the same ParseException instead.

This PR is to refactor the existing implementation and make error message consistent for Alter Table DDL.

#### How was this patch tested?
Updated the existing test cases and also added new test cases to ensure all the unsupported statements are covered.

Author: gatorsmile <gatorsmile@gmail.com>
Author: xiaoli <lixiao1983@gmail.com>
Author: Xiao Li <xiaoli@Xiaos-MacBook-Pro.local>

Closes #12459 from gatorsmile/cleanAlterTable.
2016-04-24 18:53:27 +02:00
Jacek Laskowski 8df8a81825 [DOCS][MINOR] Screenshot + minor fixes to improve reading for accumulators
## What changes were proposed in this pull request?

Added screenshot + minor fixes to improve reading

## How was this patch tested?

Manual

Author: Jacek Laskowski <jacek@japila.pl>

Closes #12569 from jaceklaskowski/docs-accumulators.
2016-04-24 10:36:33 +01:00
Steve Loughran db7113b1d3 [SPARK-13267][WEB UI] document the ?param arguments of the REST API; lift the…
Add to the REST API details on the ? args and examples from the test suite.

I've used the existing table, adding all the fields to the second table.

see [in the pr](https://github.com/steveloughran/spark/blob/history/SPARK-13267-doc-params/docs/monitoring.md).

There's a slightly more sophisticated option: make the table 3 columns wide, and for all existing entries, have the initial `td` span 2 columns. The new entries would then have an empty 1st column, param in 2nd and text in 3rd, with any examples after a `br` entry.

Author: Steve Loughran <stevel@hortonworks.com>

Closes #11152 from steveloughran/history/SPARK-13267-doc-params.
2016-04-24 10:32:22 +01:00
mathieu longtin 902c15c5e6 Support single argument version of sqlContext.getConf
## What changes were proposed in this pull request?

In Python, sqlContext.getConf didn't allow getting the system default (getConf with one parameter).

Now the following are supported:
```
sqlContext.getConf(confName)  # System default if not locally set, this is new
sqlContext.getConf(confName, myDefault)  # myDefault if not locally set, old behavior
```

I also added doctests to this function. The original behavior does not change.

## How was this patch tested?

Manually, but doctests were added.

Author: mathieu longtin <mathieu.longtin@nuance.com>

Closes #12488 from mathieulongtin/pyfixgetconf3.
2016-04-23 22:38:36 -07:00
Yin Huai 1672149c26 [SPARK-14879][SQL] Move CreateMetastoreDataSource and CreateMetastoreDataSourceAsSelect to sql/core
## What changes were proposed in this pull request?

CreateMetastoreDataSource and CreateMetastoreDataSourceAsSelect are not Hive-specific. So, this PR moves them from sql/hive to sql/core. Also, I am adding `Command` suffix to these two classes.

## How was this patch tested?
Existing tests.

Author: Yin Huai <yhuai@databricks.com>

Closes #12645 from yhuai/moveCreateDataSource.
2016-04-23 22:29:31 -07:00
Tathagata Das 2853859655 [SPARK-14833][SQL][STREAMING][TEST] Refactor StreamTests to test for source fault-tolerance correctly.
## What changes were proposed in this pull request?

Current StreamTest allows testing of a streaming Dataset generated explicitly wraps a source. This is different from the actual production code path where the source object is dynamically created through a DataSource object every time a query is started. So all the fault-tolerance testing in FileSourceSuite and FileSourceStressSuite is not really testing the actual code path as they are just reusing the FileStreamSource object.

This PR fixes StreamTest and the FileSource***Suite to test this correctly. Instead of maintaining a mapping of source --> expected offset in StreamTest (which requires reuse of source object), it now maintains a mapping of source index --> offset, so that it is independent of the source object.

Summary of changes
- StreamTest refactored to keep track of offset by source index instead of source
- AddData, AddTextData and AddParquetData updated to find the FileStreamSource object from an active query, so that it can work with sources generated when query is started.
- Refactored unit tests in FileSource***Suite to test using DataFrame/Dataset generated with public, rather than reusing the same FileStreamSource. This correctly tests fault tolerance.

The refactoring changed a lot of indents in FileSourceSuite, so its recommended to hide whitespace changes with this - https://github.com/apache/spark/pull/12592/files?w=1

## How was this patch tested?

Refactored unit tests.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #12592 from tdas/SPARK-14833.
2016-04-23 21:53:05 -07:00