…a-2.12 and JDK9
## What changes were proposed in this pull request?
Some compile error after upgrading to scala-2.12
```javascript
spark_source/core/src/main/scala/org/apache/spark/executor/Executor.scala:455: ambiguous reference to overloaded definition, method limit in class ByteBuffer of type (x$1: Int)java.nio.ByteBuffer
method limit in class Buffer of type ()Int
match expected type ?
val resultSize = serializedDirectResult.limit
error
```
The limit method was moved from ByteBuffer to the superclass Buffer and it can no longer be called without (). The same reason for position method.
```javascript
/home/zly/prj/oss/jdk9_HOS_SOURCE/spark_source/sql/hive/src/main/scala/org/apache/spark/sql/hive/execution/ScriptTransformationExec.scala:427: ambiguous reference to overloaded definition, [error] both method putAll in class Properties of type (x$1: java.util.Map[_, _])Unit [error] and method putAll in class Hashtable of type (x$1: java.util.Map[_ <: Object, _ <: Object])Unit [error] match argument types (java.util.Map[String,String])
[error] props.putAll(outputSerdeProps.toMap.asJava)
[error] ^
```
This is because the key type is Object instead of String which is unsafe.
## How was this patch tested?
running tests
Please review http://spark.apache.org/contributing.html before opening a pull request.
Author: kellyzly <kellyzly@126.com>
Closes#19854 from kellyzly/SPARK-22660.
## What changes were proposed in this pull request?
Some objects functions are using global variables which are not needed. This can generate some unneeded entries in the constant pool.
The PR replaces the unneeded global variables with local variables.
## How was this patch tested?
added UTs
Author: Marco Gaido <mgaido@hortonworks.com>
Author: Marco Gaido <marcogaido91@gmail.com>
Closes#19908 from mgaido91/SPARK-22696.
## What changes were proposed in this pull request?
GenerateSafeProjection is defining a mutable state for each struct, which is not needed. This is bad for the well known issues related to constant pool limits.
The PR replace the global variable with a local one.
## How was this patch tested?
added UT
Author: Marco Gaido <marcogaido91@gmail.com>
Closes#19914 from mgaido91/SPARK-22699.
## What changes were proposed in this pull request?
To support vectorization in native OrcFileFormat later, we need to use `buildReaderWithPartitionValues` instead of `buildReader` like ParquetFileFormat. This PR replaces `buildReader` with `buildReaderWithPartitionValues`.
## How was this patch tested?
Pass the Jenkins with the existing test cases.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19907 from dongjoon-hyun/SPARK-ORC-BUILD-READER.
## What changes were proposed in this pull request?
I propose that BlockManagerMasterEndpoint.removeRdd() should catch and log any IOExceptions it receives. As it is now, the exception can bubble up to the main thread and kill user applications when called from RDD.unpersist(). I think this change is a better experience for the end user.
I chose to catch the exception in BlockManagerMasterEndpoint.removeRdd() instead of RDD.unpersist() because this way the RDD.unpersist() blocking option will still work correctly. Otherwise, blocking will get short circuited by the first error.
## How was this patch tested?
This patch was tested with a job that shows the job killing behavior mentioned above.
rxin, it looks like you originally wrote this method, I would appreciate it if you took a look. Thanks.
This contribution is my original work and is licensed under the project's open source license.
Author: Brad Kaiser <kaiserb@us.ibm.com>
Closes#19836 from brad-kaiser/catch-unpersist-exception.
- Implemented methods getInt, getLong, getBoolean for DataSourceV2Options
- Added new unit tests to exercise these methods
Author: Sunitha Kambhampati <skambha@us.ibm.com>
Closes#19902 from skambha/spark22452.
## What changes were proposed in this pull request?
This PR accomplishes the following two items.
1. Reduce # of global variables from two to one for generated code of `Case` and `Coalesce` and remove global variables for generated code of `In`.
2. Make lifetime of global variable local within an operation
Item 1. reduces # of constant pool entries in a Java class. Item 2. ensures that an variable is not passed to arguments in a method split by `CodegenContext.splitExpressions()`, which is addressed by #19865.
## How was this patch tested?
Added new tests into `PredicateSuite`, `NullExpressionsSuite`, and `ConditionalExpressionSuite`.
Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Closes#19901 from kiszk/SPARK-22705.
## What changes were proposed in this pull request?
Similar to https://github.com/apache/spark/pull/19842 , we should also make `ColumnarRow` an immutable view, and move forward to make `ColumnVector` public.
## How was this patch tested?
Existing tests.
The performance concern should be same as https://github.com/apache/spark/pull/19842 .
Author: Wenchen Fan <wenchen@databricks.com>
Closes#19898 from cloud-fan/row-id.
## What changes were proposed in this pull request?
Since SPARK-20682, we have two `OrcFileFormat`s. This PR refactors ORC tests with three principles (with a few exceptions)
1. Move test suite into `sql/core`.
2. Create `HiveXXX` test suite in `sql/hive` by reusing `sql/core` test suite.
3. `OrcTest` will provide common helper functions and `val orcImp: String`.
**Test Suites**
*Native OrcFileFormat*
- org.apache.spark.sql.hive.orc
- OrcFilterSuite
- OrcPartitionDiscoverySuite
- OrcQuerySuite
- OrcSourceSuite
- o.a.s.sql.hive.orc
- OrcHadoopFsRelationSuite
*Hive built-in OrcFileFormat*
- o.a.s.sql.hive.orc
- HiveOrcFilterSuite
- HiveOrcPartitionDiscoverySuite
- HiveOrcQuerySuite
- HiveOrcSourceSuite
- HiveOrcHadoopFsRelationSuite
**Hierarchy**
```
OrcTest
-> OrcSuite
-> OrcSourceSuite
-> OrcQueryTest
-> OrcQuerySuite
-> OrcPartitionDiscoveryTest
-> OrcPartitionDiscoverySuite
-> OrcFilterSuite
HadoopFsRelationTest
-> OrcHadoopFsRelationSuite
-> HiveOrcHadoopFsRelationSuite
```
Please note the followings.
- Unlike the other test suites, `OrcHadoopFsRelationSuite` doesn't inherit `OrcTest`. It is inside `sql/hive` like `ParquetHadoopFsRelationSuite` due to the dependencies and follows the existing convention to use `val dataSourceName: String`
- `OrcFilterSuite`s cannot reuse test cases due to the different function signatures using Hive 1.2.1 ORC classes and Apache ORC 1.4.1 classes.
## How was this patch tested?
Pass the Jenkins tests with reorganized test suites.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19882 from dongjoon-hyun/SPARK-22672.
## What changes were proposed in this pull request?
BytesToBytesMap doesn't update peak memory usage before shrinking back to initial capacity in reset(), so after a disk spill one never knows what was the size of hash table was before spilling.
## How was this patch tested?
Checked manually.
Author: Juliusz Sompolski <julek@databricks.com>
Closes#19915 from juliuszsompolski/SPARK-22721.
## What changes were proposed in this pull request?
CreateNamedStruct and InSet are using a global variable which is not needed. This can generate some unneeded entries in the constant pool.
The PR removes the unnecessary mutable states and makes them local variables.
## How was this patch tested?
added UT
Author: Marco Gaido <marcogaido91@gmail.com>
Author: Marco Gaido <mgaido@hortonworks.com>
Closes#19896 from mgaido91/SPARK-22693.
## What changes were proposed in this pull request?
There was a bug in Univocity Parser that causes the issue in SPARK-22516. This was fixed by upgrading from 2.5.4 to 2.5.9 version of the library :
**Executing**
```
spark.read.option("header","true").option("inferSchema", "true").option("multiLine", "true").option("comment", "g").csv("test_file_without_eof_char.csv").show()
```
**Before**
```
ERROR Executor: Exception in task 0.0 in stage 6.0 (TID 6)
com.univocity.parsers.common.TextParsingException: java.lang.IllegalArgumentException - Unable to skip 1 lines from line 2. End of input reached
...
Internal state when error was thrown: line=3, column=0, record=2, charIndex=31
at com.univocity.parsers.common.AbstractParser.handleException(AbstractParser.java:339)
at com.univocity.parsers.common.AbstractParser.parseNext(AbstractParser.java:475)
at org.apache.spark.sql.execution.datasources.csv.UnivocityParser$$anon$1.next(UnivocityParser.scala:281)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
```
**After**
```
+-------+-------+
|column1|column2|
+-------+-------+
| abc| def|
+-------+-------+
```
## How was this patch tested?
The already existing `CSVSuite.commented lines in CSV data` test was extended to parse the file also in multiline mode. The test input file was modified to also include a comment in the last line.
Author: smurakozi <smurakozi@gmail.com>
Closes#19906 from smurakozi/SPARK-22516.
## What changes were proposed in this pull request?
Our Analyzer and Optimizer have multiple rules for `UnaryNode`. After making `EventTimeWatermark` extend `UnaryNode`, we do not need a special handling for `EventTimeWatermark`.
## How was this patch tested?
The existing tests
Author: gatorsmile <gatorsmile@gmail.com>
Closes#19913 from gatorsmile/eventtimewatermark.
## What changes were proposed in this pull request?
I see the two instances where the exception is occurring.
**Instance 1:**
```
17/11/10 15:49:32 ERROR util.Utils: Uncaught exception in thread driver-revive-thread
org.apache.spark.SparkException: Could not find CoarseGrainedScheduler.
at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:160)
at org.apache.spark.rpc.netty.Dispatcher.postOneWayMessage(Dispatcher.scala:140)
at org.apache.spark.rpc.netty.NettyRpcEnv.send(NettyRpcEnv.scala:187)
at org.apache.spark.rpc.netty.NettyRpcEndpointRef.send(NettyRpcEnv.scala:521)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverEndpoint$$anon$1$$anonfun$run$1$$anonfun$apply$mcV$sp$1.apply(CoarseGrainedSchedulerBackend.scala:125)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverEndpoint$$anon$1$$anonfun$run$1$$anonfun$apply$mcV$sp$1.apply(CoarseGrainedSchedulerBackend.scala:125)
at scala.Option.foreach(Option.scala:257)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverEndpoint$$anon$1$$anonfun$run$1.apply$mcV$sp(CoarseGrainedSchedulerBackend.scala:125)
at org.apache.spark.util.Utils$.tryLogNonFatalError(Utils.scala:1344)
at org.apache.spark.scheduler.cluster.CoarseGrainedSchedulerBackend$DriverEndpoint$$anon$1.run(CoarseGrainedSchedulerBackend.scala:124)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:308)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:294)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
```
In CoarseGrainedSchedulerBackend.scala, driver-revive-thread starts with DriverEndpoint.onStart() and keeps sending the ReviveOffers messages periodically till it gets shutdown as part DriverEndpoint.onStop(). There is no proper coordination between the driver-revive-thread(shutdown) and the RpcEndpoint unregister, RpcEndpoint unregister happens first and then driver-revive-thread shuts down as part of DriverEndpoint.onStop(), In-between driver-revive-thread may try to send the ReviveOffers message which is leading to the above exception.
To fix this issue, this PR moves the shutting down of driver-revive-thread to CoarseGrainedSchedulerBackend.stop() which executes before the DriverEndpoint unregister.
**Instance 2:**
```
17/11/10 16:31:38 ERROR cluster.YarnSchedulerBackend$YarnSchedulerEndpoint: Error requesting driver to remove executor 1 for reason Executor for container container_1508535467865_0226_01_000002 exited because of a YARN event (e.g., pre-emption) and not because of an error in the running job.
org.apache.spark.SparkException: Could not find CoarseGrainedScheduler.
at org.apache.spark.rpc.netty.Dispatcher.postMessage(Dispatcher.scala:160)
at org.apache.spark.rpc.netty.Dispatcher.postLocalMessage(Dispatcher.scala:135)
at org.apache.spark.rpc.netty.NettyRpcEnv.ask(NettyRpcEnv.scala:229)
at org.apache.spark.rpc.netty.NettyRpcEndpointRef.ask(NettyRpcEnv.scala:516)
at org.apache.spark.rpc.RpcEndpointRef.ask(RpcEndpointRef.scala:63)
at org.apache.spark.scheduler.cluster.YarnSchedulerBackend$YarnSchedulerEndpoint$$anonfun$receive$1.applyOrElse(YarnSchedulerBackend.scala:269)
at org.apache.spark.rpc.netty.Inbox$$anonfun$process$1.apply$mcV$sp(Inbox.scala:117)
at org.apache.spark.rpc.netty.Inbox.safelyCall(Inbox.scala:205)
at org.apache.spark.rpc.netty.Inbox.process(Inbox.scala:101)
at org.apache.spark.rpc.netty.Dispatcher$MessageLoop.run(Dispatcher.scala:221)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
```
Here YarnDriverEndpoint tries to send remove executor messages after the Yarn scheduler backend service stop, which is leading to the above exception. To avoid the above exception,
1) We may add a condition(which checks whether service has stopped or not) before sending executor remove message
2) Add a warn log message in onFailure case when the service is already stopped
In this PR, chosen the 2) option which adds a log message in the case of onFailure without the exception stack trace since the option 1) would need to to go through for every remove executor message.
## How was this patch tested?
I verified it manually, I don't see these exceptions with the PR changes.
Author: Devaraj K <devaraj@apache.org>
Closes#19741 from devaraj-kavali/SPARK-14228.
## What changes were proposed in this pull request?
I was looking at the config code today and found that configs defined using ConfigBuilder.fallbackConf didn't trigger onCreate function. This patch fixes it.
This doesn't require backporting since we currently have no configs that use it.
## How was this patch tested?
Added a test case for all the config final creator functions in ConfigEntrySuite.
Author: Reynold Xin <rxin@databricks.com>
Closes#19905 from rxin/SPARK-22710.
## What changes were proposed in this pull request?
ScalaUDF is using global variables which are not needed. This can generate some unneeded entries in the constant pool.
The PR replaces the unneeded global variables with local variables.
## How was this patch tested?
added UT
Author: Marco Gaido <mgaido@hortonworks.com>
Author: Marco Gaido <marcogaido91@gmail.com>
Closes#19900 from mgaido91/SPARK-22695.
## What changes were proposed in this pull request?
This PR accomplishes the following two items.
1. Reduce # of global variables from two to one
2. Make lifetime of global variable local within an operation
Item 1. reduces # of constant pool entries in a Java class. Item 2. ensures that an variable is not passed to arguments in a method split by `CodegenContext.splitExpressions()`, which is addressed by #19865.
## How was this patch tested?
Added new test into `ArithmeticExpressionSuite`
Author: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Closes#19899 from kiszk/SPARK-22704.
## What changes were proposed in this pull request?
make `Imputer` inherit `HasOutputCols`
## How was this patch tested?
existing tests
Author: Zheng RuiFeng <ruifengz@foxmail.com>
Closes#19889 from zhengruifeng/using_HasOutputCols.
## What changes were proposed in this pull request?
This is a follow-up of https://github.com/apache/spark/pull/19871 to improve an exception message.
## How was this patch tested?
Pass the Jenkins.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19903 from dongjoon-hyun/orc_exception.
## What changes were proposed in this pull request?
The SQL `Analyzer` goes through a whole query plan even most part of it is analyzed. This increases the time spent on query analysis for long pipelines in ML, especially.
This patch adds a logical node called `AnalysisBarrier` that wraps an analyzed logical plan to prevent it from analysis again. The barrier is applied to the analyzed logical plan in `Dataset`. It won't change the output of wrapped logical plan and just acts as a wrapper to hide it from analyzer. New operations on the dataset will be put on the barrier, so only the new nodes created will be analyzed.
This analysis barrier will be removed at the end of analysis stage.
## How was this patch tested?
Added tests.
Author: Liang-Chi Hsieh <viirya@gmail.com>
Closes#19873 from viirya/SPARK-20392-reopen.
## What changes were proposed in this pull request?
During [SPARK-22488](https://github.com/apache/spark/pull/19713) to fix view resolution issue, there occurs a regression at `2.2.1` and `master` branch like the following. This PR fixes that.
```scala
scala> spark.version
res2: String = 2.2.1
scala> sql("DROP TABLE IF EXISTS t").show
17/12/04 21:01:06 WARN DropTableCommand: org.apache.spark.sql.AnalysisException:
Table or view not found: t;
org.apache.spark.sql.AnalysisException: Table or view not found: t;
```
## How was this patch tested?
Manual.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19888 from dongjoon-hyun/SPARK-22686.
## What changes were proposed in this pull request?
As a simple example:
```
spark-sql> create table base (a int, b int) using parquet;
Time taken: 0.066 seconds
spark-sql> create table relInSubq ( x int, y int, z int) using parquet;
Time taken: 0.042 seconds
spark-sql> explain select a from base where a in (select x from relInSubq);
== Physical Plan ==
*Project [a#83]
+- *BroadcastHashJoin [a#83], [x#85], LeftSemi, BuildRight
:- *FileScan parquet default.base[a#83,b#84] Batched: true, Format: Parquet, Location: InMemoryFileIndex[hdfs://100.0.0.4:9000/wzh/base], PartitionFilters: [], PushedFilters: [], ReadSchema: struct<a:int,b:int>
+- BroadcastExchange HashedRelationBroadcastMode(List(cast(input[0, int, true] as bigint)))
+- *Project [x#85]
+- *FileScan parquet default.relinsubq[x#85] Batched: true, Format: Parquet, Location: InMemoryFileIndex[hdfs://100.0.0.4:9000/wzh/relinsubq], PartitionFilters: [], PushedFilters: [], ReadSchema: struct<x:int>
```
We only need column `a` in table `base`, but all columns (`a`, `b`) are fetched.
The reason is that, in "Operator Optimizations" batch, `ColumnPruning` first produces a `Project` on table `base`, but then it's removed by `removeProjectBeforeFilter`. Because at that time, the predicate subquery is in filter form. Then, in "Rewrite Subquery" batch, `RewritePredicateSubquery` converts the subquery into a LeftSemi join, but this batch doesn't have the `ColumnPruning` rule. This results in reading all columns for the `base` table.
## How was this patch tested?
Added a new test case.
Author: Zhenhua Wang <wangzhenhua@huawei.com>
Closes#19855 from wzhfy/column_pruning_subquery.
## What changes were proposed in this pull request?
A followup of https://github.com/apache/spark/pull/19730, we can split the code for casting struct even with whole stage codegen.
This PR also has some renaming to make the code easier to read.
## How was this patch tested?
existing test
Author: Wenchen Fan <wenchen@databricks.com>
Closes#19891 from cloud-fan/cast.
## What changes were proposed in this pull request?
This pattern appears many times in the codebase:
```
if (ctx.INPUT_ROW == null || ctx.currentVars != null) {
exprs.mkString("\n")
} else {
ctx.splitExpressions(...)
}
```
This PR adds a `ctx.splitExpressionsWithCurrentInputs` for this pattern
## How was this patch tested?
existing tests
Author: Wenchen Fan <wenchen@databricks.com>
Closes#19895 from cloud-fan/splitExpression.
## What changes were proposed in this pull request?
As the doc says "For accumulator updates performed inside actions only, Spark guarantees that each task’s update to the accumulator will only be applied once, i.e. restarted tasks will not update the value."
But currently the code doesn't guarantee this.
## How was this patch tested?
New added tests.
Author: Carson Wang <carson.wang@intel.com>
Closes#19877 from carsonwang/fixAccum.
## What changes were proposed in this pull request?
This PR aims to provide a configuration to choose the default `OrcFileFormat` from legacy `sql/hive` module or new `sql/core` module.
For example, this configuration will affects the following operations.
```scala
spark.read.orc(...)
```
```sql
CREATE TABLE t
USING ORC
...
```
## How was this patch tested?
Pass the Jenkins with new test suites.
Author: Dongjoon Hyun <dongjoon@apache.org>
Closes#19871 from dongjoon-hyun/spark-sql-orc-enabled.
## What changes were proposed in this pull request?
PropagateTypes are called twice in TypeCoercion. We do not need to call it twice. Instead, we should call it after each change on the types.
## How was this patch tested?
The existing tests
Author: gatorsmile <gatorsmile@gmail.com>
Closes#19874 from gatorsmile/deduplicatePropagateTypes.
## What changes were proposed in this pull request?
It turns out that `HashExpression` can pass around some values via parameter when splitting codes into methods, to save some global variable slots.
This can also prevent a weird case that global variable appears in parameter list, which is discovered by https://github.com/apache/spark/pull/19865
## How was this patch tested?
existing tests
Author: Wenchen Fan <wenchen@databricks.com>
Closes#19878 from cloud-fan/minor.
## What changes were proposed in this pull request?
The `HashAggregateExec` whole stage codegen path is a little messy and hard to understand, this code cleans it up a little bit, especially for the fast hash map part.
## How was this patch tested?
existing tests
Author: Wenchen Fan <wenchen@databricks.com>
Closes#19869 from cloud-fan/hash-agg.
## What changes were proposed in this pull request?
Repartitioning by empty set of expressions is currently possible, even though it is a case which is not handled properly. Indeed, in `HashExpression` there is a check to avoid to run it on an empty set, but this check is not performed while repartitioning.
Thus, the PR adds a check to avoid this wrong situation.
## How was this patch tested?
added UT
Author: Marco Gaido <marcogaido91@gmail.com>
Closes#19870 from mgaido91/SPARK-22665.
## What changes were proposed in this pull request?
This PR improves documentation for not using zero `numRows` statistics and simplifies the test case.
The reason why some Hive tables have zero `numRows` is that, in Hive, when stats gathering is disabled, `numRows` is always zero after INSERT command:
```
hive> create table src (key int, value string) stored as orc;
hive> desc formatted src;
Table Parameters:
COLUMN_STATS_ACCURATE {\"BASIC_STATS\":\"true\"}
numFiles 0
numRows 0
rawDataSize 0
totalSize 0
transient_lastDdlTime 1512399590
hive> set hive.stats.autogather=false;
hive> insert into src select 1, 'a';
hive> desc formatted src;
Table Parameters:
numFiles 1
numRows 0
rawDataSize 0
totalSize 275
transient_lastDdlTime 1512399647
hive> insert into src select 1, 'b';
hive> desc formatted src;
Table Parameters:
numFiles 2
numRows 0
rawDataSize 0
totalSize 550
transient_lastDdlTime 1512399687
```
## How was this patch tested?
Modified existing test.
Author: Zhenhua Wang <wzh_zju@163.com>
Closes#19880 from wzhfy/doc_zero_rowCount.
The main goal of this change is to allow multiple cluster-mode
submissions from the same JVM, without having them end up with
mixed configuration. That is done by extending the SparkApplication
trait, and doing so was reasonably trivial for standalone and
mesos modes.
For YARN mode, there was a complication. YARN used a "SPARK_YARN_MODE"
system property to control behavior indirectly in a whole bunch of
places, mainly in the SparkHadoopUtil / YarnSparkHadoopUtil classes.
Most of the changes here are removing that.
Since we removed support for Hadoop 1.x, some methods that lived in
YarnSparkHadoopUtil can now live in SparkHadoopUtil. The remaining
methods don't need to be part of the class, and can be called directly
from the YarnSparkHadoopUtil object, so now there's a single
implementation of SparkHadoopUtil.
There were two places in the code that relied on SPARK_YARN_MODE to
make decisions about YARN-specific functionality, and now explicitly check
the master from the configuration for that instead:
* fetching the external shuffle service port, which can come from the YARN
configuration.
* propagation of the authentication secret using Hadoop credentials. This also
was cleaned up a little to not need so many methods in `SparkHadoopUtil`.
With those out of the way, actually changing the YARN client
to extend SparkApplication was easy.
Tested with existing unit tests, and also by running YARN apps
with auth and kerberos both on and off in a real cluster.
Author: Marcelo Vanzin <vanzin@cloudera.com>
Closes#19631 from vanzin/SPARK-22372.
I have modified SparkHadoopWriter so that executors and the driver always use consistent JobIds during the hadoop commit. Before SPARK-18191, spark always used the rddId, it just incorrectly named the variable stageId. After SPARK-18191, it used the rddId as the jobId on the driver's side, and the stageId as the jobId on the executors' side. With this change executors and the driver will consistently uses rddId as the jobId. Also with this change, during the hadoop commit protocol spark uses actual stageId to check whether a stage can be committed unlike before that it was using executors' jobId to do this check.
In addition to the existing unit tests, a test has been added to check whether executors and the driver are using the same JobId. The test failed before this change and passed after applying this fix.
Author: Reza Safi <rezasafi@cloudera.com>
Closes#19848 from rezasafi/stagerddsimple.
## What changes were proposed in this pull request?
#19696 replaced the deprecated usages for `Date` and `Waiter`, but a few methods were missed. The PR fixes the forgotten deprecated usages.
## How was this patch tested?
existing UTs
Author: Marco Gaido <mgaido@hortonworks.com>
Closes#19875 from mgaido91/SPARK-22473_FOLLOWUP.
## What changes were proposed in this pull request?
Update broadcast behavior changes in migration section.
## How was this patch tested?
N/A
Author: Yuming Wang <wgyumg@gmail.com>
Closes#19858 from wangyum/SPARK-22489-migration.
This pr to ensure that the Hive's statistics `totalSize` (or `rawDataSize`) > 0, `rowCount` also must be > 0. Otherwise may cause OOM when CBO is enabled.
unit tests
Author: Yuming Wang <wgyumg@gmail.com>
Closes#19831 from wangyum/SPARK-22626.
## What changes were proposed in this pull request?
In many parts of the codebase for code generation, we are splitting the code to avoid exceptions due to the 64KB method size limit. This is generating a lot of methods which are called every time, even though sometime this is not needed. As pointed out here: https://github.com/apache/spark/pull/19752#discussion_r153081547, this is a not negligible overhead which can be avoided.
The PR applies the same approach used in #19752 also to the other places where this was feasible.
## How was this patch tested?
existing UTs.
Author: Marco Gaido <mgaido@hortonworks.com>
Closes#19860 from mgaido91/SPARK-22669.
## What changes were proposed in this pull request?
Since [SPARK-2883](https://issues.apache.org/jira/browse/SPARK-2883), Apache Spark supports Apache ORC inside `sql/hive` module with Hive dependency. This PR aims to add a new ORC data source inside `sql/core` and to replace the old ORC data source eventually. This PR resolves the following three issues.
- [SPARK-20682](https://issues.apache.org/jira/browse/SPARK-20682): Add new ORCFileFormat based on Apache ORC 1.4.1
- [SPARK-15474](https://issues.apache.org/jira/browse/SPARK-15474): ORC data source fails to write and read back empty dataframe
- [SPARK-21791](https://issues.apache.org/jira/browse/SPARK-21791): ORC should support column names with dot
## How was this patch tested?
Pass the Jenkins with the existing all tests and new tests for SPARK-15474 and SPARK-21791.
Author: Dongjoon Hyun <dongjoon@apache.org>
Author: Wenchen Fan <wenchen@databricks.com>
Closes#19651 from dongjoon-hyun/SPARK-20682.
## What changes were proposed in this pull request?
Update Bouncy Castle to 1.58, and jets3t to 0.9.4 to (sort of) match.
## How was this patch tested?
Existing tests
Author: Sean Owen <sowen@cloudera.com>
Closes#19859 from srowen/SPARK-22634.
## What changes were proposed in this pull request?
Calling `ImageSchema.readImages` multiple times as below in PySpark shell:
```python
from pyspark.ml.image import ImageSchema
data_path = 'data/mllib/images/kittens'
_ = ImageSchema.readImages(data_path, recursive=True, dropImageFailures=True).collect()
_ = ImageSchema.readImages(data_path, recursive=True, dropImageFailures=True).collect()
```
throws an error as below:
```
...
org.datanucleus.exceptions.NucleusDataStoreException: Unable to open a test connection to the given database. JDBC url = jdbc:derby:;databaseName=metastore_db;create=true, username = APP. Terminating connection pool (set lazyInit to true if you expect to start your database after your app). Original Exception: ------
java.sql.SQLException: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1742f639f, see the next exception for details.
...
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
...
at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
...
at org.apache.spark.sql.hive.client.HiveClientImpl.newState(HiveClientImpl.scala:180)
...
at org.apache.spark.sql.hive.HiveExternalCatalog$$anonfun$databaseExists$1.apply$mcZ$sp(HiveExternalCatalog.scala:195)
at org.apache.spark.sql.hive.HiveExternalCatalog$$anonfun$databaseExists$1.apply(HiveExternalCatalog.scala:195)
at org.apache.spark.sql.hive.HiveExternalCatalog$$anonfun$databaseExists$1.apply(HiveExternalCatalog.scala:195)
at org.apache.spark.sql.hive.HiveExternalCatalog.withClient(HiveExternalCatalog.scala:97)
at org.apache.spark.sql.hive.HiveExternalCatalog.databaseExists(HiveExternalCatalog.scala:194)
at org.apache.spark.sql.internal.SharedState.externalCatalog$lzycompute(SharedState.scala:100)
at org.apache.spark.sql.internal.SharedState.externalCatalog(SharedState.scala:88)
at org.apache.spark.sql.hive.HiveSessionStateBuilder.externalCatalog(HiveSessionStateBuilder.scala:39)
at org.apache.spark.sql.hive.HiveSessionStateBuilder.catalog$lzycompute(HiveSessionStateBuilder.scala:54)
at org.apache.spark.sql.hive.HiveSessionStateBuilder.catalog(HiveSessionStateBuilder.scala:52)
at org.apache.spark.sql.hive.HiveSessionStateBuilder$$anon$1.<init>(HiveSessionStateBuilder.scala:69)
at org.apache.spark.sql.hive.HiveSessionStateBuilder.analyzer(HiveSessionStateBuilder.scala:69)
at org.apache.spark.sql.internal.BaseSessionStateBuilder$$anonfun$build$2.apply(BaseSessionStateBuilder.scala:293)
at org.apache.spark.sql.internal.BaseSessionStateBuilder$$anonfun$build$2.apply(BaseSessionStateBuilder.scala:293)
at org.apache.spark.sql.internal.SessionState.analyzer$lzycompute(SessionState.scala:79)
at org.apache.spark.sql.internal.SessionState.analyzer(SessionState.scala:79)
at org.apache.spark.sql.execution.QueryExecution.analyzed$lzycompute(QueryExecution.scala:70)
at org.apache.spark.sql.execution.QueryExecution.analyzed(QueryExecution.scala:68)
at org.apache.spark.sql.execution.QueryExecution.assertAnalyzed(QueryExecution.scala:51)
at org.apache.spark.sql.Dataset$.ofRows(Dataset.scala:70)
at org.apache.spark.sql.SparkSession.internalCreateDataFrame(SparkSession.scala:574)
at org.apache.spark.sql.SparkSession.createDataFrame(SparkSession.scala:593)
at org.apache.spark.sql.SparkSession.createDataFrame(SparkSession.scala:348)
at org.apache.spark.sql.SparkSession.createDataFrame(SparkSession.scala:348)
at org.apache.spark.ml.image.ImageSchema$$anonfun$readImages$2$$anonfun$apply$1.apply(ImageSchema.scala:253)
...
Caused by: ERROR XJ040: Failed to start database 'metastore_db' with class loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1742f639f, see the next exception for details.
at org.apache.derby.iapi.error.StandardException.newException(Unknown Source)
at org.apache.derby.impl.jdbc.SQLExceptionFactory.wrapArgsForTransportAcrossDRDA(Unknown Source)
... 121 more
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database /.../spark/metastore_db.
...
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/.../spark/python/pyspark/ml/image.py", line 190, in readImages
dropImageFailures, float(sampleRatio), seed)
File "/.../spark/python/lib/py4j-0.10.6-src.zip/py4j/java_gateway.py", line 1160, in __call__
File "/.../spark/python/pyspark/sql/utils.py", line 69, in deco
raise AnalysisException(s.split(': ', 1)[1], stackTrace)
pyspark.sql.utils.AnalysisException: u'java.lang.RuntimeException: java.lang.RuntimeException: Unable to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient;'
```
Seems we better stick to `SparkSession.builder.getOrCreate()` like:
51620e288b/python/pyspark/sql/streaming.py (L329)dc5d34d8dc/python/pyspark/sql/column.py (L541)33d43bf1b6/python/pyspark/sql/readwriter.py (L105)
## How was this patch tested?
This was tested as below in PySpark shell:
```python
from pyspark.ml.image import ImageSchema
data_path = 'data/mllib/images/kittens'
_ = ImageSchema.readImages(data_path, recursive=True, dropImageFailures=True).collect()
_ = ImageSchema.readImages(data_path, recursive=True, dropImageFailures=True).collect()
```
Author: hyukjinkwon <gurwls223@gmail.com>
Closes#19845 from HyukjinKwon/SPARK-22651.
## What changes were proposed in this pull request?
Use a separate Spark event queue for StreamingQueryListenerBus so that if there are many non-streaming events, streaming query listeners don't need to wait for other Spark listeners and can catch up.
## How was this patch tested?
Jenkins
Author: Shixiong Zhu <zsxwing@gmail.com>
Closes#19838 from zsxwing/SPARK-22638.
## What changes were proposed in this pull request?
When user tries to load data with a non existing hdfs file path system is not validating it and the load command operation is getting successful.
This is misleading to the user. already there is a validation in the scenario of none existing local file path. This PR has added validation in the scenario of nonexisting hdfs file path
## How was this patch tested?
UT has been added for verifying the issue, also snapshots has been added after the verification in a spark yarn cluster
Author: sujith71955 <sujithchacko.2010@gmail.com>
Closes#19823 from sujith71955/master_LoadComand_Issue.
https://issues.apache.org/jira/browse/SPARK-22653
executorRef.address can be null, pass the executorAddress which accounts for it being null a few lines above the fix.
Manually tested this patch. You can reproduce the issue by running a simple spark-shell in yarn client mode with dynamic allocation and request some executors up front. Let those executors idle timeout. Get a heap dump. Without this fix, you will see that addressToExecutorId still contains the ids, with the fix addressToExecutorId is properly cleaned up.
Author: Thomas Graves <tgraves@oath.com>
Closes#19850 from tgravescs/SPARK-22653.
… with Janino when compiling generated code.
## What changes were proposed in this pull request?
Bump up Janino dependency version to fix thread safety issue during compiling generated code
## How was this patch tested?
Check https://issues.apache.org/jira/browse/SPARK-22373 for details.
Converted part of the code in CodeGenerator into a standalone application, so the issue can be consistently reproduced locally.
Verified that changing Janino dependency version resolved this issue.
Author: Min Shen <mshen@linkedin.com>
Closes#19839 from Victsm/SPARK-22373.
## What changes were proposed in this pull request?
The spark properties for configuring the ContextCleaner are not documented in the official documentation at https://spark.apache.org/docs/latest/configuration.html#available-properties.
This PR adds the doc.
## How was this patch tested?
Manual.
```
cd docs
jekyll build
open _site/configuration.html
```
Author: gaborgsomogyi <gabor.g.somogyi@gmail.com>
Closes#19826 from gaborgsomogyi/SPARK-22428.
## What changes were proposed in this pull request?
This PR introduces a way to explicitly range-partition a Dataset. So far, only round-robin and hash partitioning were possible via `df.repartition(...)`, but sometimes range partitioning might be desirable: e.g. when writing to disk, for better compression without the cost of global sort.
The current implementation piggybacks on the existing `RepartitionByExpression` `LogicalPlan` and simply adds the following logic: If its expressions are of type `SortOrder`, then it will do `RangePartitioning`; otherwise `HashPartitioning`. This was by far the least intrusive solution I could come up with.
## How was this patch tested?
Unit test for `RepartitionByExpression` changes, a test to ensure we're not changing the behavior of existing `.repartition()` and a few end-to-end tests in `DataFrameSuite`.
Author: Adrian Ionescu <adrian@databricks.com>
Closes#19828 from adrian-ionescu/repartitionByRange.
## What changes were proposed in this pull request?
How to reproduce:
```scala
import org.apache.spark.sql.execution.joins.BroadcastHashJoinExec
spark.createDataFrame(Seq((1, "4"), (2, "2"))).toDF("key", "value").createTempView("table1")
spark.createDataFrame(Seq((1, "1"), (2, "2"))).toDF("key", "value").createTempView("table2")
val bl = sql("SELECT /*+ MAPJOIN(t1) */ * FROM table1 t1 JOIN table2 t2 ON t1.key = t2.key").queryExecution.executedPlan
println(bl.children.head.asInstanceOf[BroadcastHashJoinExec].buildSide)
```
The result is `BuildRight`, but should be `BuildLeft`. This PR fix this issue.
## How was this patch tested?
unit tests
Author: Yuming Wang <wgyumg@gmail.com>
Closes#19714 from wangyum/SPARK-22489.
