Apache Spark - A unified analytics engine for large-scale data processing
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Baohe Zhang b2bfe985e8 [SPARK-34845][CORE] ProcfsMetricsGetter shouldn't return partial procfs metrics
### What changes were proposed in this pull request?
In ProcfsMetricsGetter.scala, propogating IOException from addProcfsMetricsFromOneProcess to computeAllMetrics when the child pid's proc stat file is unavailable. As a result, the for-loop in computeAllMetrics() can terminate earlier and return an all-0 procfs metric.

### Why are the changes needed?
In the case of a child pid's stat file missing and the subsequent child pids' stat files exist, ProcfsMetricsGetter.computeAllMetrics() will return partial metrics (the sum of a subset of child pids), which can be misleading and is undesired per the existing code comments in https://github.com/apache/spark/blob/master/core/src/main/scala/org/apache/spark/executor/ProcfsMetricsGetter.scala#L214.

Also, a side effect of this bug is that it can lead to a verbose warning log if many pids' stat files are missing. An early terminating can make the warning logs more concise.

The unit test can also explain the bug well.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
A unit test is added.

Closes #31945 from baohe-zhang/SPARK-34845.

Authored-by: Baohe Zhang <baohe.zhang@verizonmedia.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-03-29 07:46:58 -07:00
.github [SPARK-34874][INFRA] Recover test reports for failed GA builds 2021-03-26 18:12:28 +09:00
assembly [SPARK-33212][FOLLOWUP] Add hadoop-yarn-server-web-proxy for Hadoop 3.x profile 2021-02-28 16:37:49 -08:00
bin [SPARK-34688][PYTHON] Upgrade to Py4J 0.10.9.2 2021-03-11 09:51:41 -06:00
binder [SPARK-32204][SPARK-32182][DOCS] Add a quickstart page with Binder integration in PySpark documentation 2020-08-26 12:23:24 +09:00
build [SPARK-34539][BUILD][INFRA] Remove stand-alone version Zinc server 2021-03-01 08:39:38 -06:00
common [SPARK-34840][SHUFFLE] Fixes cases of corruption in merged shuffle … 2021-03-25 12:47:46 -05:00
conf [SPARK-34128][SQL] Suppress undesirable TTransportException warnings involved in THRIFT-4805 2021-03-19 21:15:28 -07:00
core [SPARK-34845][CORE] ProcfsMetricsGetter shouldn't return partial procfs metrics 2021-03-29 07:46:58 -07:00
data [SPARK-22666][ML][SQL] Spark datasource for image format 2018-09-05 11:59:00 -07:00
dev [SPARK-34542][BUILD] Upgrade Parquet to 1.12.0 2021-03-27 07:56:29 -07:00
docs [SPARK-34092][SQL] Support Stage level restful api filter task details by task status 2021-03-27 16:26:07 -05:00
examples [SPARK-34760][EXAMPLES] Replace favorite_color with age in JavaSQLDataSourceExample 2021-03-18 22:53:58 +08:00
external [SPARK-33482][SPARK-34756][SQL] Fix FileScan equality check 2021-03-23 17:01:16 +08:00
graphx [SPARK-34068][CORE][SQL][MLLIB][GRAPHX] Remove redundant collection conversion 2021-01-13 18:07:02 -06:00
hadoop-cloud [SPARK-33212][BUILD] Upgrade to Hadoop 3.2.2 and move to shaded clients for Hadoop 3.x profile 2021-01-15 14:06:50 -08:00
launcher [SPARK-33717][LAUNCHER] deprecate spark.launcher.childConectionTimeout 2021-03-26 15:53:52 -05:00
licenses [SPARK-32435][PYTHON] Remove heapq3 port from Python 3 2020-07-27 20:10:13 +09:00
licenses-binary [SPARK-32435][PYTHON] Remove heapq3 port from Python 3 2020-07-27 20:10:13 +09:00
mllib [SPARK-34858][SPARK-34448][ML] Binary Logistic Regression with intercept support centering 2021-03-26 12:28:51 -05:00
mllib-local [SPARK-34470][ML] VectorSlicer utilize ordering if possible 2021-03-22 09:46:53 +08:00
project [SPARK-34778][BUILD] Upgrade to Avro 1.10.2 2021-03-22 19:30:14 +08:00
python [SPARK-34872][SQL] quoteIfNeeded should quote a name which contains non-word characters 2021-03-29 09:31:24 +00:00
R [SPARK-34643][R][DOCS] Use CRAN URL in canonical form 2021-03-05 10:08:11 -08:00
repl [SPARK-33662][BUILD] Setting version to 3.2.0-SNAPSHOT 2020-12-04 14:10:42 -08:00
resource-managers [SPARK-34869][K8S][TEST] Extend "EXTRA LOGS FOR THE FAILED TEST" section of k8s integration test log with the describe pods output 2021-03-28 09:44:56 -07:00
sbin [SPARK-34688][PYTHON] Upgrade to Py4J 0.10.9.2 2021-03-11 09:51:41 -06:00
sql [SPARK-34255][SQL] Support partitioning with static number on required distribution and ordering on V2 write 2021-03-29 14:33:23 +00:00
streaming [SPARK-34520][CORE] Remove unused SecurityManager references 2021-02-24 20:38:03 -08:00
tools [SPARK-33662][BUILD] Setting version to 3.2.0-SNAPSHOT 2020-12-04 14:10:42 -08:00
.asf.yaml [MINOR][INFRA] Update a broken link in .asf.yml 2021-01-16 13:42:27 -08:00
.gitattributes [SPARK-30653][INFRA][SQL] EOL character enforcement for java/scala/xml/py/R files 2020-01-27 10:20:51 -08:00
.gitignore [SPARK-34539][BUILD][INFRA] Remove stand-alone version Zinc server 2021-03-01 08:39:38 -06:00
.sbtopts [SPARK-21708][BUILD] Migrate build to sbt 1.x 2020-10-07 15:28:00 -07:00
appveyor.yml [SPARK-33757][INFRA][R][FOLLOWUP] Provide more simple solution 2020-12-13 17:27:39 -08:00
CONTRIBUTING.md [MINOR][DOCS] Tighten up some key links to the project and download pages to use HTTPS 2019-05-21 10:56:42 -07:00
LICENSE [SPARK-32435][PYTHON] Remove heapq3 port from Python 3 2020-07-27 20:10:13 +09:00
LICENSE-binary [SPARK-33705][SQL][TEST] Fix HiveThriftHttpServerSuite flakiness 2020-12-14 05:14:38 +00:00
NOTICE [SPARK-29674][CORE] Update dropwizard metrics to 4.1.x for JDK 9+ 2019-11-03 15:13:06 -08:00
NOTICE-binary [SPARK-29674][CORE] Update dropwizard metrics to 4.1.x for JDK 9+ 2019-11-03 15:13:06 -08:00
pom.xml [SPARK-34542][BUILD] Upgrade Parquet to 1.12.0 2021-03-27 07:56:29 -07:00
README.md [MINOR][DOCS] Fix Jenkins job badge image and link in README.md 2020-12-16 00:10:13 -08:00
scalastyle-config.xml [SPARK-32539][INFRA] Disallow FileSystem.get(Configuration conf) in style check by default 2020-08-06 05:56:59 +00:00

Apache Spark

Spark is a unified analytics engine for large-scale data processing. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Structured Streaming for stream processing.

https://spark.apache.org/

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Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

./build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

More detailed documentation is available from the project site, at "Building Spark".

For general development tips, including info on developing Spark using an IDE, see "Useful Developer Tools".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1,000,000,000:

scala> spark.range(1000 * 1000 * 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1,000,000,000:

>>> spark.range(1000 * 1000 * 1000).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

There is also a Kubernetes integration test, see resource-managers/kubernetes/integration-tests/README.md

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version and Enabling YARN" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

Contributing

Please review the Contribution to Spark guide for information on how to get started contributing to the project.