Apache Spark - A unified analytics engine for large-scale data processing
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yi.wu d5022c3c6f [SPARK-35276][CORE] Calculate checksum for shuffle data and write as checksum file
### What changes were proposed in this pull request?

This is the initial work of add checksum support of shuffle. This is a piece of https://github.com/apache/spark/pull/32385. And this PR only adds checksum functionality at the shuffle writer side.

Basically, the idea is to wrap a `MutableCheckedOutputStream`* upon the `FileOutputStream` while the shuffle writer generating the shuffle data. But the specific wrapping places are a bit different among the shuffle writers due to their different implementation:

* `BypassMergeSortShuffleWriter` -  wrap on each partition file
* `UnsafeShuffleWriter` - wrap on each spill files directly since they doesn't require aggregation, sorting
* `SortShuffleWriter` - wrap on the `ShufflePartitionPairsWriter` after merged spill files since they might require aggregation, sorting

\* `MutableCheckedOutputStream` is a variant of `java.util.zip.CheckedOutputStream` which can change the checksum calculator at runtime.

And we use the `Adler32`, which uses the CRC-32 algorithm but much faster, to calculate the checksum as the same as `Broadcast`'s checksum.

### Why are the changes needed?

### Does this PR introduce _any_ user-facing change?

Yes, added a new conf: `spark.shuffle.checksum`.

### How was this patch tested?

Added unit tests.

Closes #32401 from Ngone51/add-checksum-files.

Authored-by: yi.wu <yi.wu@databricks.com>
Signed-off-by: Mridul Muralidharan <mridul<at>gmail.com>
(cherry picked from commit 4783fb72af)
Signed-off-by: Mridul Muralidharan <mridulatgmail.com>
2021-07-17 00:24:03 -05:00
.github [SPARK-36165][INFRA] Fix SQL doc generation in GitHub Action 2021-07-15 22:18:24 -07:00
.idea [SPARK-35223] Add IssueNavigationLink 2021-04-26 21:51:21 +08:00
assembly [SPARK-33212][FOLLOWUP] Add hadoop-yarn-server-web-proxy for Hadoop 3.x profile 2021-02-28 16:37:49 -08:00
bin [SPARK-34688][PYTHON] Upgrade to Py4J 0.10.9.2 2021-03-11 09:51:41 -06:00
binder [SPARK-35588][PYTHON][DOCS] Merge Binder integration and quickstart notebook for pandas API on Spark 2021-06-24 10:17:22 +09:00
build [SPARK-35825][INFRA][FOLLOWUP] Increase it in build/mvn script 2021-07-01 22:24:48 -07:00
common [SPARK-36081][SPARK-36066][SQL] Update the document about the behavior change of trimming characters for cast 2021-07-13 20:29:05 +08:00
conf [SPARK-35143][SQL][SHELL] Add default log level config for spark-sql 2021-04-23 14:26:19 +09:00
core [SPARK-35276][CORE] Calculate checksum for shuffle data and write as checksum file 2021-07-17 00:24:03 -05:00
data [SPARK-22666][ML][SQL] Spark datasource for image format 2018-09-05 11:59:00 -07:00
dev [SPARK-36166][TESTS] Support Scala 2.13 test in dev/run-tests.py 2021-07-15 19:26:20 -07:00
docs [SPARK-36081][SPARK-36066][SQL] Update the document about the behavior change of trimming characters for cast 2021-07-13 20:29:05 +08:00
examples [SPARK-35380][SQL] Loading SparkSessionExtensions from ServiceLoader 2021-05-13 16:34:13 +08:00
external [SPARK-36109][SS][TEST] Check data after adding data to topic in KafkaSourceStressSuite 2021-07-13 01:22:06 -07:00
graphx [SPARK-35928][BUILD] Upgrade ASM to 9.1 2021-06-29 10:27:51 -07:00
hadoop-cloud Revert "[SPARK-36068][BUILD][TEST] No tests in hadoop-cloud run unless hadoop-3.2 profile is activated explicitly" 2021-07-09 18:02:19 +09:00
launcher [SPARK-33717][LAUNCHER] deprecate spark.launcher.childConectionTimeout 2021-03-26 15:53:52 -05:00
licenses [SPARK-32435][PYTHON] Remove heapq3 port from Python 3 2020-07-27 20:10:13 +09:00
licenses-binary [SPARK-35150][ML] Accelerate fallback BLAS with dev.ludovic.netlib 2021-04-27 14:00:59 -05:00
mllib [SPARK-35678][ML][FOLLOWUP] Revert changes in ANN 2021-06-24 14:02:28 +09:00
mllib-local [SPARK-35678][ML][FOLLOWUP] softmax support offset and step 2021-06-23 21:03:18 -05:00
project [SPARK-35276][CORE] Calculate checksum for shuffle data and write as checksum file 2021-07-17 00:24:03 -05:00
python [SPARK-36160][PYTHON][DOCS] Clarifying documentation for pyspark sql/column 2021-07-16 21:41:57 +09:00
R [SPARK-36154][DOCS] Documenting week and quarter as valid formats in pyspark sql/functions trunc 2021-07-15 16:51:25 +03:00
repl [SPARK-35928][BUILD] Upgrade ASM to 9.1 2021-06-29 10:27:51 -07:00
resource-managers [SPARK-36067][BUILD][TEST][YARN] YarnClusterSuite fails due to NoClassDefFoundError unless hadoop-3.2 profile is activated explicitly 2021-07-09 15:19:03 +09:00
sbin [SPARK-34688][PYTHON] Upgrade to Py4J 0.10.9.2 2021-03-11 09:51:41 -06:00
sql [SPARK-36128][SQL] Apply spark.sql.hive.metastorePartitionPruning for non-Hive tables that uses Hive metastore for partition management 2021-07-16 13:32:45 -07:00
streaming [SPARK-34520][CORE] Remove unused SecurityManager references 2021-02-24 20:38:03 -08:00
tools [SPARK-33662][BUILD] Setting version to 3.2.0-SNAPSHOT 2020-12-04 14:10:42 -08:00
.asf.yaml [MINOR][INFRA] Update a broken link in .asf.yml 2021-01-16 13:42:27 -08:00
.gitattributes [SPARK-30653][INFRA][SQL] EOL character enforcement for java/scala/xml/py/R files 2020-01-27 10:20:51 -08:00
.gitignore [SPARK-35842][INFRA] Ignore all .idea folders 2021-06-21 22:07:02 +08:00
appveyor.yml [SPARK-33757][INFRA][R][FOLLOWUP] Provide more simple solution 2020-12-13 17:27:39 -08:00
CONTRIBUTING.md [MINOR][DOCS] Tighten up some key links to the project and download pages to use HTTPS 2019-05-21 10:56:42 -07:00
LICENSE [SPARK-32435][PYTHON] Remove heapq3 port from Python 3 2020-07-27 20:10:13 +09:00
LICENSE-binary [SPARK-35295][ML] Replace fully com.github.fommil.netlib by dev.ludovic.netlib:2.0 2021-05-12 08:59:36 -05:00
NOTICE [SPARK-29674][CORE] Update dropwizard metrics to 4.1.x for JDK 9+ 2019-11-03 15:13:06 -08:00
NOTICE-binary [SPARK-29674][CORE] Update dropwizard metrics to 4.1.x for JDK 9+ 2019-11-03 15:13:06 -08:00
pom.xml [SPARK-36129][BUILD] Upgrade commons-compress to 1.21 to deal with CVEs 2021-07-13 22:53:22 -07:00
README.md [MINOR] Add GitHub Action build status badge to the README 2021-06-17 15:25:24 -07:00
scalastyle-config.xml [SPARK-35894][BUILD] Introduce new style enforce to not import scala.collection.Seq/IndexedSeq 2021-06-26 09:41:16 +09:00

Apache Spark

Spark is a unified analytics engine for large-scale data processing. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Structured Streaming for stream processing.

https://spark.apache.org/

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Online Documentation

You can find the latest Spark documentation, including a programming guide, on the project web page. This README file only contains basic setup instructions.

Building Spark

Spark is built using Apache Maven. To build Spark and its example programs, run:

./build/mvn -DskipTests clean package

(You do not need to do this if you downloaded a pre-built package.)

More detailed documentation is available from the project site, at "Building Spark".

For general development tips, including info on developing Spark using an IDE, see "Useful Developer Tools".

Interactive Scala Shell

The easiest way to start using Spark is through the Scala shell:

./bin/spark-shell

Try the following command, which should return 1,000,000,000:

scala> spark.range(1000 * 1000 * 1000).count()

Interactive Python Shell

Alternatively, if you prefer Python, you can use the Python shell:

./bin/pyspark

And run the following command, which should also return 1,000,000,000:

>>> spark.range(1000 * 1000 * 1000).count()

Example Programs

Spark also comes with several sample programs in the examples directory. To run one of them, use ./bin/run-example <class> [params]. For example:

./bin/run-example SparkPi

will run the Pi example locally.

You can set the MASTER environment variable when running examples to submit examples to a cluster. This can be a mesos:// or spark:// URL, "yarn" to run on YARN, and "local" to run locally with one thread, or "local[N]" to run locally with N threads. You can also use an abbreviated class name if the class is in the examples package. For instance:

MASTER=spark://host:7077 ./bin/run-example SparkPi

Many of the example programs print usage help if no params are given.

Running Tests

Testing first requires building Spark. Once Spark is built, tests can be run using:

./dev/run-tests

Please see the guidance on how to run tests for a module, or individual tests.

There is also a Kubernetes integration test, see resource-managers/kubernetes/integration-tests/README.md

A Note About Hadoop Versions

Spark uses the Hadoop core library to talk to HDFS and other Hadoop-supported storage systems. Because the protocols have changed in different versions of Hadoop, you must build Spark against the same version that your cluster runs.

Please refer to the build documentation at "Specifying the Hadoop Version and Enabling YARN" for detailed guidance on building for a particular distribution of Hadoop, including building for particular Hive and Hive Thriftserver distributions.

Configuration

Please refer to the Configuration Guide in the online documentation for an overview on how to configure Spark.

Contributing

Please review the Contribution to Spark guide for information on how to get started contributing to the project.