Commit graph

1095 commits

Author SHA1 Message Date
itholic b8740a1d1e [SPARK-35499][PYTHON] Apply black to pandas API on Spark codes
### What changes were proposed in this pull request?

This PR proposes applying `black` to pandas API on Spark codes, for improving static analysis.

By executing the `./dev/reformat-python` in the spark home directory, all the code of the pandas API on Spark is fixed according to the static analysis rules.

### Why are the changes needed?

This can be reduces the cost of static analysis during development.

It has been used continuously for about a year in the Koalas project and its convenience has been proven.

### Does this PR introduce _any_ user-facing change?

No, it's dev-only.

### How was this patch tested?

Manually reformat the pandas API on Spark codes by running the `./dev/reformat-python`, and checked the `./dev/lint-python` is passed.

Closes #32779 from itholic/SPARK-35499.

Authored-by: itholic <haejoon.lee@databricks.com>
Signed-off-by: Liang-Chi Hsieh <viirya@gmail.com>
2021-06-06 17:30:07 -07:00
Hyukjin Kwon 807b4006ca [SPARK-35648][PYTHON] Refine and add dependencies needed for dev in dev/requirement.txt
### What changes were proposed in this pull request?

This PR proposes to update `dev/requirement.txt` file.

NOTE that:
- This file isn't used anywhere in Apache Spark CI. It's just for convenience
- To minimize the overhead of maintenance, I removed all lowerbounds of dependencies, which means that using the latest versions of them should work in the clean environment (e.g., you can reinstall all of them).

### Why are the changes needed?

To note the dependencies needed for Spark dev, and for easier env setting up.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

Logically derived from setup.py, and other places like CI

Closes #32780 from HyukjinKwon/SPARK-35648.

Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-06-04 15:02:29 +09:00
Takuya UESHIN 221553c204 [SPARK-35642][INFRA] Split pyspark-pandas tests to rebalance the test duration
### What changes were proposed in this pull request?

Splits some tests in `pyspark-pandas` module as slot tests to rebalance the test duration.

Picked the top 12 tests from the previous runs and the total times are almost even.

### Why are the changes needed?

Currently `pyspark-pandas` module tests take long time, so we should rebalance the tests.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Existing tests.

Closes #32778 from ueshin/issues/SPARK-35642/split-pandas-on-spark-tests.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-06-04 12:52:52 +09:00
Hyukjin Kwon 3d158f9c91 [SPARK-35587][PYTHON][DOCS] Initial porting of Koalas documentation
### What changes were proposed in this pull request?

This PR proposes to port Koalas documentation to PySpark documentation as its initial step.
It ports almost as is except these differences:

- Renamed import from `databricks.koalas` to `pyspark.pandas`.
- Renamed `to_koalas` -> `to_pandas_on_spark`
- Renamed `(Series|DataFrame).koalas` -> `(Series|DataFrame).pandas_on_spark`
- Added a `ps_` prefix in the RST file names of Koalas documentation

Other then that,

- Excluded `python/docs/build/html` in linter
- Fixed GA dependency installataion

### Why are the changes needed?

To document pandas APIs on Spark.

### Does this PR introduce _any_ user-facing change?

Yes, it adds new documentations.

### How was this patch tested?

Manually built the docs and checked the output.

Closes #32726 from HyukjinKwon/SPARK-35587.

Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-06-04 11:11:09 +09:00
Kousuke Saruta c532f8260e [SPARK-35609][BUILD] Add style rules to prohibit to use a Guava's API which is incompatible with newer versions
### What changes were proposed in this pull request?

This PR adds rules to `checkstyle.xml` and `scalastyle-config.xml` to avoid introducing `Objects.toStringHelper` a Guava's API which is no longer present in newer Guava.

### Why are the changes needed?

SPARK-30272 (#26911) replaced `Objects.toStringHelper` which is an APIs Guava 14 provides with `commons.lang3` API because `Objects.toStringHelper` is no longer present in newer Guava.
But toStringHelper was introduced into Spark again and replaced them in SPARK-35420 (#32567).
I think it's better to have a style rule to avoid such repetition.

SPARK-30272 replaced some APIs aside from `Objects.toStringHelper` but `Objects.toStringHelper` seems to affect Spark for now so I add rules only for it.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

I confirmed that `lint-java` and `lint-scala` detect the usage of `toStringHelper` and let the lint check fail.
```
$ dev/lint-java
exec: curl --silent --show-error -L https://downloads.lightbend.com/scala/2.12.14/scala-2.12.14.tgz
Using `mvn` from path: /opt/maven/3.6.3//bin/mvn
Checkstyle checks failed at following occurrences:
[ERROR] src/main/java/org/apache/spark/network/protocol/OneWayMessage.java:[78] (regexp) RegexpSinglelineJava: Avoid using Object.toStringHelper. Use ToStringBuilder instead.

$ dev/lint-scala
Scalastyle checks failed at following occurrences:
[error] /home/kou/work/oss/spark/core/src/main/scala/org/apache/spark/rdd/RDD.scala:93:25: Avoid using Object.toStringHelper. Use ToStringBuilder instead.
[error] Total time: 25 s, completed 2021/06/02 16:18:25
```

Closes #32740 from sarutak/style-rule-for-guava.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Kousuke Saruta <sarutak@oss.nttdata.com>
2021-06-03 21:52:41 +09:00
Hyukjin Kwon d478cff8bb [SPARK-35620][BUILD][PYTHON] Remove documentation build in Python linter
### What changes were proposed in this pull request?

This PR proposes to remove PySpark documentation build in linter check because:

- to speed up CI build by removing duplicate documentation build (linter and doc build)
- for https://github.com/apache/spark/pull/32726. With this PR PySpark documentation build requires a full Spark build to generate plot images in PySpark documentation. It makes less sense to require it in Python linter.
- to remove unnecessary dependency installation for Python linter in CI

### Why are the changes needed?

Python linter script includes documentation build. Because of this, we run documentation builds duplicately in CI, and requires unnecessary dependencies to be installed, and takes extra time. It would more make sense to exclude this in Python linter.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

Manually tested, and it will be tested in CI.

Closes #32760 from HyukjinKwon/SPARK-35620.

Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-06-03 12:48:30 +09:00
yangjie01 ff27264ae5 [SPARK-35550][BUILD] Upgrade Jackson to 2.12.3
### What changes were proposed in this pull request?
This pr upgrade Jackson version to 2.12.3.
Jackson Release 2.12.3: [https://github.com/FasterXML/jackson/wiki/Jackson-Release-2.12.3](https://github.com/FasterXML/jackson/wiki/Jackson-Release-2.12.3)

### Why are the changes needed?
Upgrade to a new version to bring potential bug fixes like [https://github.com/FasterXML/jackson-modules-java8/issues/207](https://github.com/FasterXML/jackson-modules-java8/issues/207)  and avro's master has been upgraded to Jackson to 2.12.3

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Pass the Jenkins or GitHub Action

Closes #32688 from LuciferYang/SPARK-35550.

Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-05-31 10:28:43 +09:00
Dongjoon Hyun 6c4b60f3b3 [SPARK-31168][BUILD] Upgrade Scala to 2.12.14
### What changes were proposed in this pull request?

This PR is the 4th try to upgrade Scala 2.12.x in order to see the feasibility.
- https://github.com/apache/spark/pull/27929 (Upgrade Scala to 2.12.11, wangyum )
- https://github.com/apache/spark/pull/30940 (Upgrade Scala to 2.12.12, viirya )
- https://github.com/apache/spark/pull/31223 (Upgrade Scala to 2.12.13, dongjoon-hyun )

Note that Scala 2.12.14 has the following fix for Apache Spark community.
- Fix cyclic error in runtime reflection (protobuf), a regression that prevented Spark upgrading to 2.12.13

REQUIREMENTS:
- [x] `silencer` library is released via https://github.com/ghik/silencer/pull/66
- [x] `genjavadoc` library is released via https://github.com/lightbend/genjavadoc/issues/282

### Why are the changes needed?

Apache Spark was stuck to 2.12.10 due to the regression in Scala 2.12.11/2.12.12/2.12.13. This will bring all the bug fixes.
- https://github.com/scala/scala/releases/tag/v2.12.14
- https://github.com/scala/scala/releases/tag/v2.12.13
- https://github.com/scala/scala/releases/tag/v2.12.12
- https://github.com/scala/scala/releases/tag/v2.12.11

### Does this PR introduce _any_ user-facing change?

Yes, but this is a bug-fixed version.

### How was this patch tested?

Pass the CIs.

Closes #32697 from dongjoon-hyun/SPARK-31168.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-05-30 16:08:13 -07:00
Kousuke Saruta 2de19e460b [SPARK-35483][INFRA] Add docker-integration-tests to run-tests.py and GA
### What changes were proposed in this pull request?

This PR proposes to add `docker-integratin-tests` to `run-tests.py` and GA.
Once #32631 was merged but there was a lack of consideration.

Diff between this change and 692d95d145 merged in #32631 is as follows.

```
       if: github.repository != 'apache/spark'
       id: sync-branch
       run: |
+        apache_spark_ref=`git rev-parse HEAD`
         git fetch https://github.com/$GITHUB_REPOSITORY.git ${GITHUB_REF#refs/heads/}
         git -c user.name='Apache Spark Test Account' -c user.email='sparktestaccgmail.com' merge --no-commit --progress --squash FETCH_HEAD
         git -c user.name='Apache Spark Test Account' -c user.email='sparktestaccgmail.com' commit -m "Merged commit"
+        echo "::set-output name=APACHE_SPARK_REF::$apache_spark_ref"
     - name: Cache Scala, SBT and Maven
       uses: actions/cachev2
       with:
```

### Why are the changes needed?

CI for `docker-integration-tests` is absent for now.

### Does this PR introduce _any_ user-facing change?

GA.

### How was this patch tested?

Closes #32691 from sarutak/docker-integration-test-ga-take2.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-05-28 16:54:47 +09:00
Hyukjin Kwon d189cf75f9 Revert "[SPARK-35483][INFRA] Add docker-integration-tests to run-tests.py and GA"
This reverts commit 0a74ad66b3.
2021-05-28 14:29:12 +09:00
Kousuke Saruta 0a74ad66b3 [SPARK-35483][INFRA] Add docker-integration-tests to run-tests.py and GA
### What changes were proposed in this pull request?

This PR proposes to add `docker-integratin-tests` to `run-tests.py` and GA.
`doker-integration-tests` can't run if docker is not installed so it run only if `docker-integration-tests` is specified with `--module`.

### Why are the changes needed?

CI for `docker-integration-tests` is absent for now.

### Does this PR introduce _any_ user-facing change?

GA.

### How was this patch tested?

Closes #32631 from sarutak/docker-integration-test-ga.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-05-28 07:56:37 +09:00
Xinrong Meng 8cc7232ffa [SPARK-35522][PYTHON] Introduce BinaryOps for BinaryType
### What changes were proposed in this pull request?

BinaryType, which represents byte sequence values in Spark, doesn't support data-type-based operations yet. We are going to introduce BinaryOps for it.

### Why are the changes needed?

The data-type-based-operations class should be set for each individual data type, including BinaryType.
In addition, BinaryType has its special way of addition, which means concatenation.

### Does this PR introduce _any_ user-facing change?

Yes.

Before the change:
```py
>>> import pyspark.pandas as ps
>>> psser = ps.Series([b'1', b'2', b'3'])
>>> psser + psser
Traceback (most recent call last):
...
TypeError: Type object was not understood.
>>> psser + b'1'
Traceback (most recent call last):
...
TypeError: Type object was not understood.

```
After the change:
```py
>>> import pyspark.pandas as ps
>>> psser = ps.Series([b'1', b'2', b'3'])
>>> psser + psser
0    [49, 49]
1    [50, 50]
2    [51, 51]
dtype: object
>>> psser + b'1'
0    [49, 49]
1    [50, 49]
2    [51, 49]
dtype: object
```

### How was this patch tested?

Unit tests.

Closes #32665 from xinrong-databricks/datatypeops_binary.

Lead-authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Co-authored-by: xinrong-databricks <47337188+xinrong-databricks@users.noreply.github.com>
Signed-off-by: Takuya UESHIN <ueshin@databricks.com>
2021-05-26 14:30:24 -07:00
Xinrong Meng 266608d50e [SPARK-35452][PYTHON] Introduce ArrayOps, MapOps and StructOps
### What changes were proposed in this pull request?

The PR is proposed to introduce ArrayOps, MapOps and StructOps to handle data-type-based operations for StructType, ArrayType, and MapType separately.

### Why are the changes needed?

StructType, ArrayType, and MapType are not accepted by DataTypeOps now.

We should handle these complex types. Among them:

- ArrayType supports concatenation: for example, ps.Series([[1,2,3]]) + ps.Series([[4,5,6]]) should work the same as pd.Series([[1,2,3]]) + pd.Series([[4,5,6]]), as concatenation.

- StructOps will be helpful to make to/from pandas conversion data-type-based.

### Does this PR introduce _any_ user-facing change?

Yes.

Before the change:
```py
>>> import pyspark.pandas as ps
>>> from pyspark.pandas.config import set_option
>>> set_option("compute.ops_on_diff_frames", True)
>>> ps.Series([[1, 2, 3]]) + ps.Series([[0.4, 0.5]])
Traceback (most recent call last):
...
TypeError: Type object was not understood.
>>> ps.Series([[1, 2, 3]]) + ps.Series([[4, 5]])
Traceback (most recent call last):
...
TypeError: Type object was not understood.
>>> ps.Series([[1, 2, 3]]) + ps.Series([['x']])
Traceback (most recent call last):
...
TypeError: Type object was not understood.
```

After the change:
```py
>>> import pyspark.pandas as ps
>>> from pyspark.pandas.config import set_option
>>> set_option("compute.ops_on_diff_frames", True)
>>> ps.Series([[1, 2, 3]]) + ps.Series([[0.4, 0.5]])
0    [1.0, 2.0, 3.0, 0.4, 0.5]
dtype: object
>>> ps.Series([[1, 2, 3]]) + ps.Series([[4, 5]])
0    [1, 2, 3, 4, 5]
dtype: object
>>> ps.Series([[1, 2, 3]]) + ps.Series([['x']])
Traceback (most recent call last):
...
TypeError: Concatenation can only be applied to arrays of the same type
```

### How was this patch tested?

Unit tests.

Closes #32626 from xinrong-databricks/datatypeop_complex.

Authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Signed-off-by: Takuya UESHIN <ueshin@databricks.com>
2021-05-26 10:40:01 -07:00
Vinod KC e3c6907c99 [SPARK-35490][BUILD] Update json4s to 3.7.0-M11
### What changes were proposed in this pull request?
This PR aims to upgrade json4s from   3.7.0-M5  to 3.7.0-M11

Note: json4s version greater than 3.7.0-M11 is not binary compatible with Spark third party jars

### Why are the changes needed?
Multiple defect fixes and improvements  like

https://github.com/json4s/json4s/issues/750
https://github.com/json4s/json4s/issues/554
https://github.com/json4s/json4s/issues/715

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Ran with the existing UTs

Closes #32636 from vinodkc/br_build_upgrade_json4s.

Authored-by: Vinod KC <vinod.kc.in@gmail.com>
Signed-off-by: Max Gekk <max.gekk@gmail.com>
2021-05-26 11:10:14 +03:00
Hyukjin Kwon e47e615c0e [SPARK-35506][PYTHON][INFRA] Run tests with Python 3.9 in GitHub Actions
### What changes were proposed in this pull request?

This PR enables GitHub Actions to test PySpark with Python 3.9.

### Why are the changes needed?

To verify the support of Python 3.9.

### Does this PR introduce _any_ user-facing change?

No, test-only.

### How was this patch tested?

Existing tests should cover.

Closes #32657 from HyukjinKwon/SPARK-35506.

Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
2021-05-26 09:25:51 +09:00
Vinod KC 4ba1db91f0 [SPARK-35513][BUILD] Update joda-time to 2.10.10
### What changes were proposed in this pull request?
This PR aims to upgrade joda-time from 2.10.5 to 2.10.10

### Why are the changes needed?
Improvement and bug fixes in joda-time
https://www.joda.org/joda-time/changes-report.html#a2.10.10

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Ran with the existing UTs

Closes #32661 from vinodkc/br_build_upgrade_joda_time.

Authored-by: Vinod KC <vinod.kc.in@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-05-25 11:29:03 -07:00
Gengliang Wang 321c6545b3 [SPARK-35514][INFRA] Automatically update version index of DocSearch via release-tag.sh
### What changes were proposed in this pull request?

Automatically update version index of DocSearch via release-tag.sh for releasing new documentation site, instead of the current manual update.

### Why are the changes needed?

Simplify the release process.

### Does this PR introduce _any_ user-facing change?

No

### How was this patch tested?

Manually run the following command and check the diff
```
R_NEXT_VERSION=3.2.0
sed -i".tmp8" "s/'facetFilters':.*$/'facetFilters': [\"version:$R_NEXT_VERSION\"]/g" docs/_config.yml
```

Closes #32662 from gengliangwang/updateDocsearchInRelease.

Authored-by: Gengliang Wang <ltnwgl@gmail.com>
Signed-off-by: Gengliang Wang <ltnwgl@gmail.com>
2021-05-26 00:30:44 +08:00
Vinod KC d5868ebc39 [SPARK-35492][BUILD] Upgrade httpcore to 4.4.14
### What changes were proposed in this pull request?
This PR aims to upgrade Apache HttpCore from 4.4.12 to 4.4.14.

### Why are the changes needed?
Stability improvements in httpcore 4.4.14

- Bug fix: Non-blocking TLSv1.3 connections can end up in an infinite event spin when closed concurrently by the local and the remote endpoints.
- HTTPCORE-647: Non-blocking connection terminated due to 'java.io.IOException: Broken pipe' can enter an infinite loop flushing buffered output data.
- PR #201, HTTPCORE-634: Fix race condition in AbstractConnPool that can cause internal state
-   corruption
- HTTPCORE-612: DefaultConnectionReuseStrategy incorrectly used int to represent Content-Length value
-   instead of long

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
 With Jenkins Tests

Closes #32638 from vinodkc/br_build_upgrade_httpcore.

Authored-by: Vinod KC <vinod.kc.in@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-05-23 08:16:50 -07:00
Dongjoon Hyun fa424ac2b8 [SPARK-35489][BUILD] Upgrade ORC to 1.6.8
### What changes were proposed in this pull request?

This PR aims to upgrade ORC to 1.6.8.

### Why are the changes needed?

This will bring the latest bug fixes.
- https://orc.apache.org/news/2021/05/21/ORC-1.6.8/

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the existing CIs.

Closes #32635 from dongjoon-hyun/SPARK-35489.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-05-22 10:35:40 -07:00
Vinod KC 003294ce1d [SPARK-35488][BUILD] Upgrade ASM to 7.3.1
### What changes were proposed in this pull request?
This PR aims to upgrade ASM to 7.3.1.

- https://issues.apache.org/jira/browse/XBEAN-323
- https://asm.ow2.io/versions.html

### Why are the changes needed?
ASM 7.3.1 bring following changes

- new V15 constant
- experimental support for PermittedSubtypes and RecordComponent
- bug fixes
- - 317885: SKIP_DEBUG now skips MethodParameters attributes

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Ran with the existing UTs

Closes #32634 from vinodkc/br_build_upgrade_asm.

Authored-by: Vinod KC <vinod.kc.in@gmail.com>
Signed-off-by: Kousuke Saruta <sarutak@oss.nttdata.com>
2021-05-23 02:33:15 +09:00
Kousuke Saruta 6bd6e46aec [SPARK-35487][BUILD] Upgrade dropwizard metrics to 4.2.0
### What changes were proposed in this pull request?

This PR upgrades Dropwizard metrics to 4.2.0.
I also modified the corresponding links in `docs/monitoring.md`.

### Why are the changes needed?

The latest version was released last week and it contains some improvements.
https://github.com/dropwizard/metrics/releases/tag/v4.2.0

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Build succeeds and all the modified links are reachable.

Closes #32628 from sarutak/upgrade-dropwizard-4.2.0.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-05-21 22:53:32 -07:00
Dongjoon Hyun 3757c1803d [SPARK-35462][BUILD][K8S] Upgrade Kubernetes-client to 5.4.0 to support K8s 1.21 models
### What changes were proposed in this pull request?

This PR aims to upgrade `kubernetes-client` from 5.3.1 to 5.4.0 to support K8s 1.21 models officially.

### Why are the changes needed?

`kubernetes-client` 5.4.0 has `Kubernetes Model v1.21.0`
- https://github.com/fabric8io/kubernetes-client/releases/tag/v5.4.0

### Does this PR introduce _any_ user-facing change?

No. This is a dev-only change.

### How was this patch tested?

Pass the CIs including Jenkins K8s IT.
- https://github.com/apache/spark/pull/32612#issuecomment-845456039

I tested K8s IT with the following versions.
- minikube version: v1.20.0
- K8s Client Version: v1.21.0
- Server Version: v1.21.0

```
KubernetesSuite:
- Run SparkPi with no resources
- Run SparkPi with a very long application name.
- Use SparkLauncher.NO_RESOURCE
- Run SparkPi with a master URL without a scheme.
- Run SparkPi with an argument.
- Run SparkPi with custom labels, annotations, and environment variables.
- All pods have the same service account by default
- Run extraJVMOptions check on driver
- Run SparkRemoteFileTest using a remote data file
- Verify logging configuration is picked from the provided SPARK_CONF_DIR/log4j.properties
- Run SparkPi with env and mount secrets.
- Run PySpark on simple pi.py example
- Run PySpark to test a pyfiles example
- Run PySpark with memory customization
- Run in client mode.
- Start pod creation from template
- Launcher client dependencies
- SPARK-33615: Launcher client archives
- SPARK-33748: Launcher python client respecting PYSPARK_PYTHON
- SPARK-33748: Launcher python client respecting spark.pyspark.python and spark.pyspark.driver.python
- Launcher python client dependencies using a zip file
- Test basic decommissioning
- Test basic decommissioning with shuffle cleanup
- Test decommissioning with dynamic allocation & shuffle cleanups
- Test decommissioning timeouts
- Run SparkR on simple dataframe.R example
Run completed in 17 minutes, 18 seconds.
Total number of tests run: 26
Suites: completed 2, aborted 0
Tests: succeeded 26, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
```

Closes #32612 from dongjoon-hyun/SPARK-35462.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-05-20 14:34:58 -07:00
Bo Zhang e170e63955 [SPARK-35457][BUILD] Bump ANTLR runtime version to 4.8
### What changes were proposed in this pull request?
This PR changes the antlr4-runtime version from 4.8-1 to 4.8.

### Why are the changes needed?
Version 4.8 is the official release version, with a proper release note (see https://github.com/antlr/antlr4/releases) and artifiacts listed in https://www.antlr.org/download/index.html.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Will rely on tests in the PR.

Closes #32603 from bozhang2820/antlr-4.8.

Authored-by: Bo Zhang <bo.zhang@databricks.com>
Signed-off-by: Takeshi Yamamuro <yamamuro@apache.org>
2021-05-20 17:24:40 +09:00
Xinrong Meng a970f8505d [SPARK-35338][PYTHON] Separate arithmetic operations into data type based structures
### What changes were proposed in this pull request?

The PR is proposed for **pandas APIs on Spark**, in order to separate arithmetic operations shown as below into data-type-based structures.
`__add__, __sub__, __mul__, __truediv__, __floordiv__, __pow__, __mod__,
__radd__, __rsub__, __rmul__, __rtruediv__, __rfloordiv__, __rpow__,__rmod__`

DataTypeOps and subclasses are introduced.

The existing behaviors of each arithmetic operation should be preserved.

### Why are the changes needed?

Currently, the same arithmetic operation of all data types is defined in one function, so it’s difficult to extend the behavior change based on the data types.

Introducing DataTypeOps would be the foundation for [pandas APIs on Spark: Separate basic operations into data type based structures.](https://docs.google.com/document/d/12MS6xK0hETYmrcl5b9pX5lgV4FmGVfpmcSKq--_oQlc/edit?usp=sharing).

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Tests are introduced under pyspark.pandas.tests.data_type_ops. One test file per DataTypeOps class.

Closes #32596 from xinrong-databricks/datatypeop_arith_fix.

Authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Signed-off-by: Takuya UESHIN <ueshin@databricks.com>
2021-05-19 19:47:00 -07:00
Takuya UESHIN d44e6c7f10 Revert "[SPARK-35338][PYTHON] Separate arithmetic operations into data type based structures"
This reverts commit d1b24d8aba.
2021-05-19 16:49:47 -07:00
Xinrong Meng d1b24d8aba [SPARK-35338][PYTHON] Separate arithmetic operations into data type based structures
### What changes were proposed in this pull request?

The PR is proposed for **pandas APIs on Spark**, in order to separate arithmetic operations shown as below into data-type-based structures.
`__add__, __sub__, __mul__, __truediv__, __floordiv__, __pow__, __mod__,
__radd__, __rsub__, __rmul__, __rtruediv__, __rfloordiv__, __rpow__,__rmod__`

DataTypeOps and subclasses are introduced.

The existing behaviors of each arithmetic operation should be preserved.

### Why are the changes needed?

Currently, the same arithmetic operation of all data types is defined in one function, so it’s difficult to extend the behavior change based on the data types.

Introducing DataTypeOps would be the foundation for [pandas APIs on Spark: Separate basic operations into data type based structures.](https://docs.google.com/document/d/12MS6xK0hETYmrcl5b9pX5lgV4FmGVfpmcSKq--_oQlc/edit?usp=sharing).

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Tests are introduced under pyspark.pandas.tests.data_type_ops. One test file per DataTypeOps class.

Closes #32469 from xinrong-databricks/datatypeop_arith.

Authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Signed-off-by: Takuya UESHIN <ueshin@databricks.com>
2021-05-19 15:05:32 -07:00
Kousuke Saruta 7b942d523c [SPARK-35425][BUILD] Pin jinja2 in spark-rm/Dockerfile and add as a required dependency in the release README.md
### What changes were proposed in this pull request?

The following two things are done in this PR.

* Add note about Jinja2 as a required dependency for document build.
* Add Jinja2 dependency for the document build to `spark-rm/Dockerfile`

### Why are the changes needed?

SPARK-35375(#32509) confined the version of Jinja to <3.0.0.
So it's good to note about it in `docs/README.md` and add the dependency to `spark-rm/Dockerfile`.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

I confimed that `make html` succeed under `python/docs` with the following command.
```
sudo pip install 'sphinx<3.1.0' mkdocs numpy pydata_sphinx_theme ipython nbsphinx numpydoc 'jinja2<3.0.0'
```

Closes #32573 from sarutak/required-module-for-python-doc.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Kousuke Saruta <sarutak@oss.nttdata.com>
2021-05-18 16:48:23 +09:00
Hyukjin Kwon 7d371d27f2 [SPARK-35393][PYTHON][INFRA][TESTS] Recover pip packaging test in Github Actions
### What changes were proposed in this pull request?

Currently pip packaging test is being skipped:

```
========================================================================
Running PySpark packaging tests
========================================================================
Constructing virtual env for testing
Missing virtualenv & conda, skipping pip installability tests
Cleaning up temporary directory - /tmp/tmp.iILYWISPXW
```

See https://github.com/apache/spark/runs/2568923639?check_suite_focus=true

GitHub Actions's image has its default Conda installed at `/usr/share/miniconda` but seems like the image we're using for PySpark does not have it (which is legitimate).

This PR proposes to install Conda to use in pip packaging tests in GitHub Actions.

### Why are the changes needed?

To recover the test coverage.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

It was tested in my fork: https://github.com/HyukjinKwon/spark/runs/2575126882?check_suite_focus=true

```
========================================================================
Running PySpark packaging tests
========================================================================
Constructing virtual env for testing
Using conda virtual environments
Testing pip installation with python 3.6
Using /tmp/tmp.qPjTenqfGn for virtualenv
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /tmp/tmp.qPjTenqfGn/3.6

  added / updated specs:
    - numpy
    - pandas
    - pip
    - python=3.6
    - setuptools

...

Successfully ran pip sanity check
```

Closes #32537 from HyukjinKwon/SPARK-35393.

Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-05-13 10:35:56 -07:00
Ludovic Henry b52d47a920 [SPARK-35295][ML] Replace fully com.github.fommil.netlib by dev.ludovic.netlib:2.0
### What changes were proposed in this pull request?

Bump to `dev.ludovic.netlib:2.0` which provides JNI-based wrappers for BLAS, ARPACK, and LAPACK. Theseare not taking dependencies on GPL or LGPL libraries, allowing to provide out-of-the-box support for hardware acceleration when a native library is present (this is still up to the end-user to install such library on their system, like OpenBLAS, Intel MKL, and libarpack2).

### Why are the changes needed?

Great performance improvement for ML-related workload on vanilla-distributions of Spark.

### Does this PR introduce _any_ user-facing change?

Users now take advantage of hardware acceleration as long as a native library is installed (like OpenBLAS, Intel MKL and libarpack2).

### How was this patch tested?

Spark test-suite + dev.ludovic.netlib testsuite.

#### JDK8:
```
[info] OpenJDK 64-Bit Server VM 1.8.0_292-b10 on Linux 5.8.0-50-generic
[info] Intel(R) Xeon(R) E-2276G CPU  3.80GHz
[info]
[info] f2jBLAS    = dev.ludovic.netlib.blas.F2jBLAS
[info] javaBLAS   = dev.ludovic.netlib.blas.Java8BLAS
[info] nativeBLAS = dev.ludovic.netlib.blas.JNIBLAS
[info]
[info] daxpy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        220            226           6        454.9           2.2       1.0X
[info] java                       221            228           5        451.9           2.2       1.0X
[info] native                     209            215           5        478.7           2.1       1.1X
[info]
[info] saxpy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        121            125           3        823.3           1.2       1.0X
[info] java                       121            125           3        824.3           1.2       1.0X
[info] native                     101            105           3        988.4           1.0       1.2X
[info]
[info] dcopy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        212            219           6        470.9           2.1       1.0X
[info] java                       208            212           4        481.0           2.1       1.0X
[info] native                     209            215           5        478.5           2.1       1.0X
[info]
[info] scopy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        114            119           3        878.9           1.1       1.0X
[info] java                        99            105           3       1011.4           1.0       1.2X
[info] native                      97            103           3       1026.7           1.0       1.2X
[info]
[info] ddot:            Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        108            111           2        925.9           1.1       1.0X
[info] java                        71             73           2       1414.9           0.7       1.5X
[info] native                      54             56           2       1847.0           0.5       2.0X
[info]
[info] sdot:            Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         96             97           2       1046.8           1.0       1.0X
[info] java                        47             48           1       2129.8           0.5       2.0X
[info] native                      29             30           1       3404.7           0.3       3.3X
[info]
[info] dnrm2:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        139            143           2        718.2           1.4       1.0X
[info] java                        46             47           1       2171.2           0.5       3.0X
[info] native                      44             46           2       2261.8           0.4       3.1X
[info]
[info] snrm2:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        154            157           4        651.0           1.5       1.0X
[info] java                        40             42           1       2469.3           0.4       3.8X
[info] native                      26             27           1       3787.6           0.3       5.8X
[info]
[info] dscal:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        185            195           8        541.0           1.8       1.0X
[info] java                       186            196           7        538.5           1.9       1.0X
[info] native                     177            187           7        564.1           1.8       1.0X
[info]
[info] sscal:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         98            102           3       1016.2           1.0       1.0X
[info] java                        98            102           3       1017.8           1.0       1.0X
[info] native                      87             91           3       1143.2           0.9       1.1X
[info]
[info] dgemv[N]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         68             70           1       1474.7           0.7       1.0X
[info] java                        51             52           1       1973.0           0.5       1.3X
[info] native                      30             32           1       3298.8           0.3       2.2X
[info]
[info] dgemv[T]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         96             99           2       1037.9           1.0       1.0X
[info] java                        50             51           1       1999.6           0.5       1.9X
[info] native                      30             31           1       3368.1           0.3       3.2X
[info]
[info] sgemv[N]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         59             61           1       1688.7           0.6       1.0X
[info] java                        41             42           1       2461.9           0.4       1.5X
[info] native                      15             16           1       6593.0           0.2       3.9X
[info]
[info] sgemv[T]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         90             92           1       1116.2           0.9       1.0X
[info] java                        39             40           1       2565.8           0.4       2.3X
[info] native                      15             16           1       6594.2           0.2       5.9X
[info]
[info] dger:            Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        192            202           7        520.5           1.9       1.0X
[info] java                       203            214           7        491.9           2.0       0.9X
[info] native                     176            187           7        568.8           1.8       1.1X
[info]
[info] dspmv[U]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         59             61           1        846.1           1.2       1.0X
[info] java                        38             39           1       1313.5           0.8       1.6X
[info] native                      24             27           1       2047.8           0.5       2.4X
[info]
[info] dspr[U]:         Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         97            101           3        515.4           1.9       1.0X
[info] java                        97            101           2        515.1           1.9       1.0X
[info] native                      88             91           3        569.1           1.8       1.1X
[info]
[info] dsyr[U]:         Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        169            174           3        295.4           3.4       1.0X
[info] java                       169            174           3        295.4           3.4       1.0X
[info] native                     160            165           4        312.2           3.2       1.1X
[info]
[info] dgemm[N,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        561            577          13       1782.3           0.6       1.0X
[info] java                       225            231           4       4446.2           0.2       2.5X
[info] native                      31             32           3      32473.1           0.0      18.2X
[info]
[info] dgemm[N,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        570            584           9       1754.8           0.6       1.0X
[info] java                       224            230           4       4457.3           0.2       2.5X
[info] native                      31             32           1      32493.4           0.0      18.5X
[info]
[info] dgemm[T,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        855            866           6       1169.2           0.9       1.0X
[info] java                       224            228           3       4466.9           0.2       3.8X
[info] native                      31             32           1      32395.5           0.0      27.7X
[info]
[info] dgemm[T,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                       1328           1344           8        752.8           1.3       1.0X
[info] java                       224            230           4       4458.9           0.2       5.9X
[info] native                      31             32           1      32201.8           0.0      42.8X
[info]
[info] sgemm[N,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        534            541           5       1873.0           0.5       1.0X
[info] java                       220            224           3       4542.8           0.2       2.4X
[info] native                      15             16           1      66803.1           0.0      35.7X
[info]
[info] sgemm[N,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        544            551           6       1839.6           0.5       1.0X
[info] java                       220            224           4       4538.2           0.2       2.5X
[info] native                      15             16           1      65589.9           0.0      35.7X
[info]
[info] sgemm[T,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        833            845          21       1201.0           0.8       1.0X
[info] java                       220            224           3       4548.7           0.2       3.8X
[info] native                      15             16           1      66603.2           0.0      55.5X
[info]
[info] sgemm[T,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        899            907           5       1112.9           0.9       1.0X
[info] java                       221            224           2       4531.6           0.2       4.1X
[info] native                      15             16           1      65944.9           0.0      59.3X
```

#### JDK11:
```
[info] OpenJDK 64-Bit Server VM 11.0.11+9-LTS on Linux 5.8.0-50-generic
[info] Intel(R) Xeon(R) E-2276G CPU  3.80GHz
[info]
[info] f2jBLAS    = dev.ludovic.netlib.blas.F2jBLAS
[info] javaBLAS   = dev.ludovic.netlib.blas.Java11BLAS
[info] nativeBLAS = dev.ludovic.netlib.blas.JNIBLAS
[info]
[info] daxpy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        195            200           3        512.2           2.0       1.0X
[info] java                       197            202           3        507.0           2.0       1.0X
[info] native                     184            189           4        543.0           1.8       1.1X
[info]
[info] saxpy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        108            112           3        921.8           1.1       1.0X
[info] java                       101            105           3        989.4           1.0       1.1X
[info] native                      87             91           3       1147.1           0.9       1.2X
[info]
[info] dcopy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        187            191           3        535.1           1.9       1.0X
[info] java                       182            188           3        548.8           1.8       1.0X
[info] native                     178            182           3        562.2           1.8       1.1X
[info]
[info] scopy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        110            114           3        909.3           1.1       1.0X
[info] java                        86             93           4       1159.3           0.9       1.3X
[info] native                      86             90           3       1162.4           0.9       1.3X
[info]
[info] ddot:            Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        106            108           2        943.6           1.1       1.0X
[info] java                        70             71           2       1426.8           0.7       1.5X
[info] native                      54             56           2       1835.4           0.5       1.9X
[info]
[info] sdot:            Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         96             97           1       1047.1           1.0       1.0X
[info] java                        43             44           1       2331.9           0.4       2.2X
[info] native                      29             30           1       3392.1           0.3       3.2X
[info]
[info] dnrm2:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        114            115           2        880.7           1.1       1.0X
[info] java                        42             43           1       2398.1           0.4       2.7X
[info] native                      45             46           1       2233.3           0.4       2.5X
[info]
[info] snrm2:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        140            143           2        714.6           1.4       1.0X
[info] java                        28             29           1       3531.0           0.3       4.9X
[info] native                      26             27           1       3820.0           0.3       5.3X
[info]
[info] dscal:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        156            166           7        641.3           1.6       1.0X
[info] java                       158            167           6        633.2           1.6       1.0X
[info] native                     150            160           7        664.8           1.5       1.0X
[info]
[info] sscal:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         85             88           2       1181.7           0.8       1.0X
[info] java                        85             88           2       1176.0           0.9       1.0X
[info] native                      75             78           2       1333.2           0.8       1.1X
[info]
[info] dgemv[N]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         58             59           1       1731.1           0.6       1.0X
[info] java                        41             43           1       2415.5           0.4       1.4X
[info] native                      30             31           1       3293.9           0.3       1.9X
[info]
[info] dgemv[T]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         94             96           1       1063.4           0.9       1.0X
[info] java                        41             42           1       2435.8           0.4       2.3X
[info] native                      30             30           1       3379.8           0.3       3.2X
[info]
[info] sgemv[N]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         44             45           1       2278.9           0.4       1.0X
[info] java                        37             38           0       2686.8           0.4       1.2X
[info] native                      15             16           1       6555.4           0.2       2.9X
[info]
[info] sgemv[T]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         88             89           1       1142.1           0.9       1.0X
[info] java                        33             34           1       3010.7           0.3       2.6X
[info] native                      15             16           1       6553.9           0.2       5.7X
[info]
[info] dger:            Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        164            172           4        609.4           1.6       1.0X
[info] java                       163            172           5        612.6           1.6       1.0X
[info] native                     150            159           4        667.0           1.5       1.1X
[info]
[info] dspmv[U]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         49             50           1       1029.4           1.0       1.0X
[info] java                        41             42           1       1209.4           0.8       1.2X
[info] native                      25             27           1       2029.2           0.5       2.0X
[info]
[info] dspr[U]:         Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         80             85           3        622.2           1.6       1.0X
[info] java                        80             85           3        622.4           1.6       1.0X
[info] native                      75             79           3        668.7           1.5       1.1X
[info]
[info] dsyr[U]:         Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        137            142           3        364.1           2.7       1.0X
[info] java                       139            142           2        360.4           2.8       1.0X
[info] native                     131            135           3        380.4           2.6       1.0X
[info]
[info] dgemm[N,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        517            525           5       1935.5           0.5       1.0X
[info] java                       213            216           3       4704.8           0.2       2.4X
[info] native                      31             31           1      32705.6           0.0      16.9X
[info]
[info] dgemm[N,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        589            601           6       1698.6           0.6       1.0X
[info] java                       213            217           3       4693.3           0.2       2.8X
[info] native                      31             32           1      32498.9           0.0      19.1X
[info]
[info] dgemm[T,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        851            865           6       1175.3           0.9       1.0X
[info] java                       212            216           3       4717.0           0.2       4.0X
[info] native                      30             32           1      32903.0           0.0      28.0X
[info]
[info] dgemm[T,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                       1301           1316           6        768.4           1.3       1.0X
[info] java                       212            216           2       4717.4           0.2       6.1X
[info] native                      31             32           1      32606.0           0.0      42.4X
[info]
[info] sgemm[N,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        454            460           2       2203.0           0.5       1.0X
[info] java                       208            212           3       4803.8           0.2       2.2X
[info] native                      15             16           0      66586.0           0.0      30.2X
[info]
[info] sgemm[N,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        529            536           4       1889.7           0.5       1.0X
[info] java                       208            212           3       4798.6           0.2       2.5X
[info] native                      15             16           1      66751.4           0.0      35.3X
[info]
[info] sgemm[T,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        830            840           5       1205.1           0.8       1.0X
[info] java                       208            211           2       4814.1           0.2       4.0X
[info] native                      15             15           1      67676.4           0.0      56.2X
[info]
[info] sgemm[T,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        894            907           7       1118.7           0.9       1.0X
[info] java                       208            211           3       4809.6           0.2       4.3X
[info] native                      15             16           1      66675.2           0.0      59.6X
```

#### JDK16:
```
[info] OpenJDK 64-Bit Server VM 16+36 on Linux 5.8.0-50-generic
[info] Intel(R) Xeon(R) E-2276G CPU  3.80GHz
[info]
[info] f2jBLAS    = dev.ludovic.netlib.blas.F2jBLAS
[info] javaBLAS   = dev.ludovic.netlib.blas.VectorBLAS
[info] nativeBLAS = dev.ludovic.netlib.blas.JNIBLAS
[info]
[info] daxpy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        193            199           3        517.5           1.9       1.0X
[info] java                       181            186           4        553.2           1.8       1.1X
[info] native                     181            185           5        553.6           1.8       1.1X
[info]
[info] saxpy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        108            112           2        925.1           1.1       1.0X
[info] java                        88             91           3       1138.6           0.9       1.2X
[info] native                      87             91           3       1144.2           0.9       1.2X
[info]
[info] dcopy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        184            189           3        542.5           1.8       1.0X
[info] java                       181            185           3        552.8           1.8       1.0X
[info] native                     179            183           2        558.0           1.8       1.0X
[info]
[info] scopy:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         97            101           3       1031.6           1.0       1.0X
[info] java                        86             90           2       1163.7           0.9       1.1X
[info] native                      85             88           2       1182.9           0.8       1.1X
[info]
[info] ddot:            Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        107            109           2        932.4           1.1       1.0X
[info] java                        54             56           2       1846.7           0.5       2.0X
[info] native                      54             56           2       1846.7           0.5       2.0X
[info]
[info] sdot:            Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         96             97           1       1043.6           1.0       1.0X
[info] java                        29             30           1       3439.3           0.3       3.3X
[info] native                      29             30           1       3423.9           0.3       3.3X
[info]
[info] dnrm2:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        121            123           2        829.8           1.2       1.0X
[info] java                        32             32           1       3171.3           0.3       3.8X
[info] native                      45             46           1       2246.2           0.4       2.7X
[info]
[info] snrm2:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        142            144           2        705.9           1.4       1.0X
[info] java                        15             16           1       6585.8           0.2       9.3X
[info] native                      26             27           1       3839.5           0.3       5.4X
[info]
[info] dscal:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        157            165           5        635.6           1.6       1.0X
[info] java                       151            159           5        664.0           1.5       1.0X
[info] native                     151            160           5        663.6           1.5       1.0X
[info]
[info] sscal:           Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         85             89           2       1172.3           0.9       1.0X
[info] java                        75             79           3       1337.3           0.7       1.1X
[info] native                      75             79           2       1335.5           0.7       1.1X
[info]
[info] dgemv[N]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         58             59           1       1731.5           0.6       1.0X
[info] java                        28             29           1       3544.2           0.3       2.0X
[info] native                      30             31           1       3306.2           0.3       1.9X
[info]
[info] dgemv[T]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         90             92           1       1108.3           0.9       1.0X
[info] java                        28             28           1       3622.5           0.3       3.3X
[info] native                      30             31           1       3381.3           0.3       3.1X
[info]
[info] sgemv[N]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         44             45           1       2284.7           0.4       1.0X
[info] java                        14             15           1       7034.0           0.1       3.1X
[info] native                      15             16           1       6643.7           0.2       2.9X
[info]
[info] sgemv[T]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         85             86           1       1177.4           0.8       1.0X
[info] java                        15             15           1       6886.1           0.1       5.8X
[info] native                      15             16           1       6560.1           0.2       5.6X
[info]
[info] dger:            Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        164            173           6        608.1           1.6       1.0X
[info] java                       148            157           5        675.2           1.5       1.1X
[info] native                     152            160           5        659.9           1.5       1.1X
[info]
[info] dspmv[U]:        Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         61             63           1        815.4           1.2       1.0X
[info] java                        16             17           1       3104.3           0.3       3.8X
[info] native                      24             27           1       2071.9           0.5       2.5X
[info]
[info] dspr[U]:         Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                         81             85           2        616.4           1.6       1.0X
[info] java                        81             85           2        614.7           1.6       1.0X
[info] native                      75             78           2        669.5           1.5       1.1X
[info]
[info] dsyr[U]:         Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        138            141           3        362.7           2.8       1.0X
[info] java                       137            140           2        365.3           2.7       1.0X
[info] native                     131            134           2        382.9           2.6       1.1X
[info]
[info] dgemm[N,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        525            544           8       1906.2           0.5       1.0X
[info] java                        61             68           3      16358.1           0.1       8.6X
[info] native                      31             32           1      32623.7           0.0      17.1X
[info]
[info] dgemm[N,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        580            598          12       1724.5           0.6       1.0X
[info] java                        61             68           4      16302.5           0.1       9.5X
[info] native                      30             32           1      32962.8           0.0      19.1X
[info]
[info] dgemm[T,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        829            838           4       1206.2           0.8       1.0X
[info] java                        61             69           3      16339.7           0.1      13.5X
[info] native                      30             31           1      33231.9           0.0      27.6X
[info]
[info] dgemm[T,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                       1352           1363           5        739.6           1.4       1.0X
[info] java                        61             69           3      16347.0           0.1      22.1X
[info] native                      31             32           1      32740.3           0.0      44.3X
[info]
[info] sgemm[N,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        482            493           7       2073.1           0.5       1.0X
[info] java                        35             38           2      28315.3           0.0      13.7X
[info] native                      15             15           1      67579.7           0.0      32.6X
[info]
[info] sgemm[N,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        472            482           4       2119.0           0.5       1.0X
[info] java                        36             38           2      28138.1           0.0      13.3X
[info] native                      15             16           1      66616.5           0.0      31.4X
[info]
[info] sgemm[T,N]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        823            830           5       1215.2           0.8       1.0X
[info] java                        35             38           2      28681.4           0.0      23.6X
[info] native                      15             15           1      67908.4           0.0      55.9X
[info]
[info] sgemm[T,T]:      Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] -----------------------------------------------------------------------------------------------
[info] f2j                        896            908           7       1115.8           0.9       1.0X
[info] java                        35             38           2      28402.0           0.0      25.5X
[info] native                      15             16           0      66691.2           0.0      59.8X
```

TODO:
- [x] update documentation in `docs/` and `docs/ml-linalg-guide.md` refering `com.github.fommil.netlib`
- [ ] merge https://github.com/luhenry/netlib/pull/1 with all feedback from this PR + remove references to snapshot repositories in `pom.xml` and `project/SparkBuild.scala`.

Closes #32415 from luhenry/master.

Authored-by: Ludovic Henry <git@ludovic.dev>
Signed-off-by: Sean Owen <srowen@gmail.com>
2021-05-12 08:59:36 -05:00
Takeshi Yamamuro 101b0cc313 [SPARK-35253][SQL][BUILD] Bump up the janino version to v3.1.4
### What changes were proposed in this pull request?

This PR proposes to bump up the janino version from 3.0.16 to v3.1.4.
The major changes of this upgrade are as follows:
 - Fixed issue #131: Janino 3.1.2 is 10x slower than 3.0.11: The Compiler's IClassLoader was initialized way too eagerly, thus lots of classes were loaded from the class path, which is very slow.
 - Improved the encoding of stack map frames according to JVMS11 4.7.4: Previously, only "full_frame"s were generated.
 - Fixed issue #107: Janino requires "org.codehaus.commons.compiler.io", but commons-compiler does not export this package
 - Fixed the promotion of the array access index expression (see JLS7 15.13 Array Access Expressions).

For all the changes, please see the change log: http://janino-compiler.github.io/janino/changelog.html

NOTE1: I've checked that there is no obvious performance regression. For all the data, see a link: https://docs.google.com/spreadsheets/d/1srxT9CioGQg1fLKM3Uo8z1sTzgCsMj4pg6JzpdcG6VU/edit?usp=sharing

NOTE2: We upgraded janino to 3.1.2 (#27860) once before, but the commit had been reverted in #29495 because of the correctness issue. Recently, #32374 had checked if Spark could land on v3.1.3 or not, but a new bug was found there. These known issues has been fixed in v3.1.4 by following PRs:
 - janino-compiler/janino#145
 - janino-compiler/janino#146

### Why are the changes needed?

janino v3.0.X  is no longer maintained.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

GA passed.

Closes #32455 from maropu/janino_v3.1.4.

Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Sean Owen <srowen@gmail.com>
2021-05-12 08:57:57 -05:00
Liang-Chi Hsieh 20d32242a2 [SPARK-35358][BUILD] Increase maximum Java heap used for release build to avoid OOM
### What changes were proposed in this pull request?

This patch proposes to increase the maximum heap memory setting for release build.

### Why are the changes needed?

When I was cutting RCs for 2.4.8, I frequently encountered OOM during building using mvn. It happens many times until I increased the heap memory setting.

I am not sure if other release managers encounter the same issue. So I propose to increase the heap memory setting and see if it looks good for others.

### Does this PR introduce _any_ user-facing change?

No, dev only.

### How was this patch tested?

Manually used it during cutting RCs of 2.4.8.

Closes #32487 from viirya/release-mvn-oom.

Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2021-05-10 00:29:05 -07:00
Kousuke Saruta 2634dbac35 [SPARK-35175][BUILD] Add linter for JavaScript source files
### What changes were proposed in this pull request?

This PR proposes to add linter for JavaScript source files.
[ESLint](https://eslint.org/) seems to be a popular linter for JavaScript so I choose it.

### Why are the changes needed?

Linter enables us to check style and keeps code clean.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Manually run `dev/lint-js` (Node.js and npm are required).

In this PR, mainly indentation style is also fixed an linter passes.

Closes #32274 from sarutak/introduce-eslint.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Kousuke Saruta <sarutak@oss.nttdata.com>
2021-05-07 21:55:08 +09:00
Dongjoon Hyun 482b43d78d [SPARK-35326][BUILD][FOLLOWUP] Update dependency manifest files
### What changes were proposed in this pull request?

This is a followup of https://github.com/apache/spark/pull/32453.

### Why are the changes needed?

Jenkins doesn't check dependency manifest files.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the GitHub Action or manually.

Closes #32458 from dongjoon-hyun/SPARK-35326.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-05-06 09:08:10 -07:00
Dongjoon Hyun a0c76a8755 [SPARK-35319][K8S][BUILD] Upgrade K8s client to 5.3.1
### What changes were proposed in this pull request?

This PR aims to upgrade K8s client to 5.3.1.

### Why are the changes needed?

This will bring the latest bug fixes.
- https://github.com/fabric8io/kubernetes-client/releases/tag/v5.3.1

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the CIs.

K8s IT is manually tested like the following.

```
KubernetesSuite:
- Run SparkPi with no resources
- Run SparkPi with a very long application name.
- Use SparkLauncher.NO_RESOURCE
- Run SparkPi with a master URL without a scheme.
- Run SparkPi with an argument.
- Run SparkPi with custom labels, annotations, and environment variables.
- All pods have the same service account by default
- Run extraJVMOptions check on driver
- Run SparkRemoteFileTest using a remote data file
- Verify logging configuration is picked from the provided SPARK_CONF_DIR/log4j.properties
- Run SparkPi with env and mount secrets.
- Run PySpark on simple pi.py example
- Run PySpark to test a pyfiles example
- Run PySpark with memory customization
- Run in client mode.
- Start pod creation from template
- PVs with local storage
- Launcher client dependencies
- SPARK-33615: Launcher client archives
- SPARK-33748: Launcher python client respecting PYSPARK_PYTHON
- SPARK-33748: Launcher python client respecting spark.pyspark.python and spark.pyspark.driver.python
- Launcher python client dependencies using a zip file
- Test basic decommissioning
- Test basic decommissioning with shuffle cleanup
- Test decommissioning with dynamic allocation & shuffle cleanups
- Test decommissioning timeouts
- Run SparkR on simple dataframe.R example
Run completed in 18 minutes, 33 seconds.
Total number of tests run: 27
Suites: completed 2, aborted 0
Tests: succeeded 27, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Spark Project Parent POM 3.2.0-SNAPSHOT:
[INFO]
[INFO] Spark Project Parent POM ........................... SUCCESS [  3.959 s]
[INFO] Spark Project Tags ................................. SUCCESS [  7.830 s]
[INFO] Spark Project Local DB ............................. SUCCESS [  3.457 s]
[INFO] Spark Project Networking ........................... SUCCESS [  5.496 s]
[INFO] Spark Project Shuffle Streaming Service ............ SUCCESS [  3.239 s]
[INFO] Spark Project Unsafe ............................... SUCCESS [  9.006 s]
[INFO] Spark Project Launcher ............................. SUCCESS [  2.422 s]
[INFO] Spark Project Core ................................. SUCCESS [02:17 min]
[INFO] Spark Project Kubernetes Integration Tests ......... SUCCESS [21:05 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  23:59 min
[INFO] Finished at: 2021-05-05T11:59:19-07:00
[INFO] ------------------------------------------------------------------------
```

Closes #32443 from dongjoon-hyun/SPARK-35319.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-05-05 19:50:37 -07:00
William Hyun ac8813e37c [SPARK-35277][BUILD] Upgrade snappy to 1.1.8.4
### What changes were proposed in this pull request?
This PR aims to upgrade snappy to version 1.1.8.4.

### Why are the changes needed?
This will bring the latest bug fixes and improvements.
- https://github.com/xerial/snappy-java/blob/master/Milestone.md#snappy-java-1183-2021-01-20

    - Make pure-java Snappy thread-safe
    - Improved SnappyFramedInput/OutputStream performance by using java.util.zip.CRC32C

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?
Pass the CIs.

Closes #32402 from williamhyun/snappy1184.

Authored-by: William Hyun <william@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-04-29 21:26:16 -07:00
lipzhu 77e9152898 [SPARK-35255][BUILD] Automated formatting for Scala Code for Blank Lines
### What changes were proposed in this pull request?

https://github.com/databricks/scala-style-guide#blanklines
https://scalameta.org/scalafmt/docs/configuration.html#newlinestoplevelstatements

### How was this patch tested?

Manually tested by modifying a few files and running ./dev/scalafmt then checking that ./dev/scalastyle still passed.

Closes #32383 from lipzhu/SPARK-35255.

Authored-by: lipzhu <lipzhu@ebay.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-30 11:45:58 +09:00
yangjie01 7b78e34417 [SPARK-35269][BUILD] Upgrade commons-lang3 to 3.12.0
### What changes were proposed in this pull request?

This pr aims to upgrade Apache commons-lang3 to 3.12.0

### Why are the changes needed?
This version will bring the latest bug fixes as follows:

- https://commons.apache.org/proper/commons-lang/changes-report.html#a3.12.0

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Pass the Jenkins or GitHub Action

Closes #32393 from LuciferYang/lang3-to-312.

Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-04-29 09:27:28 -07:00
Ludovic Henry 5b77ebb57b [SPARK-35150][ML] Accelerate fallback BLAS with dev.ludovic.netlib
### What changes were proposed in this pull request?

Following https://github.com/apache/spark/pull/30810, I've continued looking for ways to accelerate the usage of BLAS in Spark. With this PR, I integrate work done in the [`dev.ludovic.netlib`](https://github.com/luhenry/netlib/) Maven package.

The `dev.ludovic.netlib` library wraps the original `com.github.fommil.netlib` library and focus on accelerating the linear algebra routines in use in Spark. When running the `org.apache.spark.ml.linalg.BLASBenchmark` benchmarking suite, I get the results at [1] on an Intel machine. Moreover, this library is thoroughly tested to return the exact same results as the reference implementation.

Under the hood, it reimplements the necessary algorithms in pure autovectorization-friendly Java 8, as well as takes advantage of the Vector API and Foreign Linker API introduced in JDK 16 when available.

A table summarising which version gets loaded in which case:

```
|                       | BLAS.nativeBLAS                                    | BLAS.javaBLAS                                      |
| --------------------- | -------------------------------------------------- | -------------------------------------------------- |
| with -Pnetlib-lgpl    | 1. dev.ludovic.netlib.blas.NetlibNativeBLAS, a     | 1. dev.ludovic.netlib.blas.VectorizedBLAS          |
|                       |     wrapper for com.github.fommil:all              |    (JDK16+, relies on the Vector API, requires     |
|                       | 2. dev.ludovic.netlib.blas.ForeignBLAS (JDK16+,    |     `--add-modules=jdk.incubator.vector` on JDK16) |
|                       |    relies on the Foreign Linker API, requires      | 2. dev.ludovic.netlib.blas.Java11BLAS (JDK11+)     |
|                       |    `--add-modules=jdk.incubator.foreign            | 3. dev.ludovic.netlib.blas.JavaBLAS                |
|                       |     -Dforeign.restricted=warn`)                    | 4. dev.ludovic.netlib.blas.NetlibF2jBLAS, a        |
|                       | 3. fails to load, falls back to BLAS.javaBLAS in   |     wrapper for com.github.fommil:core             |
|                       |     org.apache.spark.ml.linalg.BLAS                |                                                    |
| --------------------- | -------------------------------------------------- | -------------------------------------------------- |
| without -Pnetlib-lgpl | 1. dev.ludovic.netlib.blas.ForeignBLAS (JDK16+,    | 1. dev.ludovic.netlib.blas.VectorizedBLAS          |
|                       |    relies on the Foreign Linker API, requires      |    (JDK16+, relies on the Vector API, requires     |
|                       |    `--add-modules=jdk.incubator.foreign            |     `--add-modules=jdk.incubator.vector` on JDK16) |
|                       |     -Dforeign.restricted=warn`)                    | 2. dev.ludovic.netlib.blas.Java11BLAS (JDK11+)     |
|                       | 2. fails to load, falls back to BLAS.javaBLAS in   | 3. dev.ludovic.netlib.blas.JavaBLAS                |
|                       |     org.apache.spark.ml.linalg.BLAS                | 4. dev.ludovic.netlib.blas.NetlibF2jBLAS, a        |
|                       |                                                    |     wrapper for com.github.fommil:core             |
| --------------------- | -------------------------------------------------- | -------------------------------------------------- |
```

### Why are the changes needed?

Accelerates linear algebra operations when the pure-java fallback method is in use. Transparently falls back to native implementation (OpenBLAS, MKL) when available.

### Does this PR introduce _any_ user-facing change?

No, all changes are transparent to the user.

### How was this patch tested?

The `dev.ludovic.netlib` library has its own test suite [2]. It has also been validated by running the Spark test suite and benchmarking suite.

[1] Results for `org.apache.spark.ml.linalg.BLASBenchmark`:
#### JDK8:
```
[info] OpenJDK 64-Bit Server VM 1.8.0_292-b10 on Linux 5.8.0-50-generic
[info] Intel(R) Xeon(R) E-2276G CPU  3.80GHz
[info]
[info] f2jBLAS    = dev.ludovic.netlib.blas.NetlibF2jBLAS
[info] javaBLAS   = dev.ludovic.netlib.blas.Java8BLAS
[info] nativeBLAS = dev.ludovic.netlib.blas.Java8BLAS
[info]
[info] daxpy:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 223            232           8        448.0           2.2       1.0X
[info] java                                                221            228           7        453.0           2.2       1.0X
[info]
[info] saxpy:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 122            128           4        821.2           1.2       1.0X
[info] java                                                122            128           4        822.3           1.2       1.0X
[info]
[info] ddot:                                     Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 109            112           2        921.4           1.1       1.0X
[info] java                                                 70             74           3       1423.5           0.7       1.5X
[info]
[info] sdot:                                     Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                  96             98           2       1046.1           1.0       1.0X
[info] java                                                 47             49           2       2121.7           0.5       2.0X
[info]
[info] dscal:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 184            195           8        544.3           1.8       1.0X
[info] java                                                185            196           7        539.5           1.9       1.0X
[info]
[info] sscal:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                  99            104           4       1011.9           1.0       1.0X
[info] java                                                 99            104           4       1010.4           1.0       1.0X
[info]
[info] dspmv[U]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0        947.2           1.1       1.0X
[info] java                                                  0              0           0       1584.8           0.6       1.7X
[info]
[info] dspr[U]:                                  Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0        867.4           1.2       1.0X
[info] java                                                  1              1           0        865.0           1.2       1.0X
[info]
[info] dsyr[U]:                                  Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0        485.9           2.1       1.0X
[info] java                                                  1              1           0        486.8           2.1       1.0X
[info]
[info] dgemv[N]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0       1843.0           0.5       1.0X
[info] java                                                  0              0           0       2690.6           0.4       1.5X
[info]
[info] dgemv[T]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0       1214.7           0.8       1.0X
[info] java                                                  0              0           0       2536.8           0.4       2.1X
[info]
[info] sgemv[N]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0       1895.9           0.5       1.0X
[info] java                                                  0              0           0       2961.1           0.3       1.6X
[info]
[info] sgemv[T]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0       1223.4           0.8       1.0X
[info] java                                                  0              0           0       3091.4           0.3       2.5X
[info]
[info] dgemm[N,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 560            575          20       1787.1           0.6       1.0X
[info] java                                                226            232           5       4432.4           0.2       2.5X
[info]
[info] dgemm[N,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 570            586          23       1755.2           0.6       1.0X
[info] java                                                227            232           4       4410.1           0.2       2.5X
[info]
[info] dgemm[T,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 863            879          17       1158.4           0.9       1.0X
[info] java                                                227            231           3       4407.9           0.2       3.8X
[info]
[info] dgemm[T,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                1282           1305          23        780.0           1.3       1.0X
[info] java                                                227            232           4       4413.4           0.2       5.7X
[info]
[info] sgemm[N,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 538            548           8       1858.6           0.5       1.0X
[info] java                                                221            226           3       4521.1           0.2       2.4X
[info]
[info] sgemm[N,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 549            558          10       1819.9           0.5       1.0X
[info] java                                                222            229           7       4503.5           0.2       2.5X
[info]
[info] sgemm[T,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 838            852          12       1193.0           0.8       1.0X
[info] java                                                222            229           5       4500.5           0.2       3.8X
[info]
[info] sgemm[T,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 905            919          18       1104.8           0.9       1.0X
[info] java                                                221            228           5       4521.3           0.2       4.1X
```

#### JDK11:
```
[info] OpenJDK 64-Bit Server VM 11.0.11+9-LTS on Linux 5.8.0-50-generic
[info] Intel(R) Xeon(R) E-2276G CPU  3.80GHz
[info]
[info] f2jBLAS    = dev.ludovic.netlib.blas.NetlibF2jBLAS
[info] javaBLAS   = dev.ludovic.netlib.blas.Java11BLAS
[info] nativeBLAS = dev.ludovic.netlib.blas.Java11BLAS
[info]
[info] daxpy:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 195            204          10        512.7           2.0       1.0X
[info] java                                                195            202           7        512.4           2.0       1.0X
[info]
[info] saxpy:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 108            113           4        923.3           1.1       1.0X
[info] java                                                102            107           4        984.4           1.0       1.1X
[info]
[info] ddot:                                     Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 107            110           3        938.1           1.1       1.0X
[info] java                                                 69             72           3       1447.1           0.7       1.5X
[info]
[info] sdot:                                     Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                  96             98           2       1046.5           1.0       1.0X
[info] java                                                 43             45           2       2317.1           0.4       2.2X
[info]
[info] dscal:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 155            168           8        644.2           1.6       1.0X
[info] java                                                158            169           8        632.8           1.6       1.0X
[info]
[info] sscal:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                  85             90           4       1178.1           0.8       1.0X
[info] java                                                 86             90           4       1167.7           0.9       1.0X
[info]
[info] dspmv[U]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   0              0           0       1182.1           0.8       1.0X
[info] java                                                  0              0           0       1432.1           0.7       1.2X
[info]
[info] dspr[U]:                                  Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0        898.7           1.1       1.0X
[info] java                                                  1              1           0        891.5           1.1       1.0X
[info]
[info] dsyr[U]:                                  Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0        495.4           2.0       1.0X
[info] java                                                  1              1           0        495.7           2.0       1.0X
[info]
[info] dgemv[N]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   0              0           0       2271.6           0.4       1.0X
[info] java                                                  0              0           0       3648.1           0.3       1.6X
[info]
[info] dgemv[T]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0       1229.3           0.8       1.0X
[info] java                                                  0              0           0       2711.3           0.4       2.2X
[info]
[info] sgemv[N]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   0              0           0       2677.5           0.4       1.0X
[info] java                                                  0              0           0       3288.2           0.3       1.2X
[info]
[info] sgemv[T]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0       1233.0           0.8       1.0X
[info] java                                                  0              0           0       2766.3           0.4       2.2X
[info]
[info] dgemm[N,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 520            536          16       1923.6           0.5       1.0X
[info] java                                                214            221           7       4669.5           0.2       2.4X
[info]
[info] dgemm[N,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 593            612          17       1686.5           0.6       1.0X
[info] java                                                215            219           3       4643.3           0.2       2.8X
[info]
[info] dgemm[T,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 853            870          16       1172.8           0.9       1.0X
[info] java                                                215            218           3       4659.7           0.2       4.0X
[info]
[info] dgemm[T,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                1350           1370          23        740.8           1.3       1.0X
[info] java                                                215            219           4       4656.6           0.2       6.3X
[info]
[info] sgemm[N,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 460            468           6       2173.2           0.5       1.0X
[info] java                                                210            213           2       4752.7           0.2       2.2X
[info]
[info] sgemm[N,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 535            544           8       1869.3           0.5       1.0X
[info] java                                                210            215           5       4761.8           0.2       2.5X
[info]
[info] sgemm[T,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 843            853          11       1186.8           0.8       1.0X
[info] java                                                209            214           4       4793.4           0.2       4.0X
[info]
[info] sgemm[T,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 891            904          15       1122.0           0.9       1.0X
[info] java                                                209            214           4       4777.2           0.2       4.3X
```

#### JDK16:
```
[info] OpenJDK 64-Bit Server VM 16+36 on Linux 5.8.0-50-generic
[info] Intel(R) Xeon(R) E-2276G CPU  3.80GHz
[info]
[info] f2jBLAS    = dev.ludovic.netlib.blas.NetlibF2jBLAS
[info] javaBLAS   = dev.ludovic.netlib.blas.VectorizedBLAS
[info] nativeBLAS = dev.ludovic.netlib.blas.VectorizedBLAS
[info]
[info] daxpy:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 194            199           7        515.7           1.9       1.0X
[info] java                                                181            186           3        551.1           1.8       1.1X
[info]
[info] saxpy:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 109            115           4        915.0           1.1       1.0X
[info] java                                                 88             92           3       1138.8           0.9       1.2X
[info]
[info] ddot:                                     Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 108            110           2        922.6           1.1       1.0X
[info] java                                                 54             56           2       1839.2           0.5       2.0X
[info]
[info] sdot:                                     Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                  96             97           2       1046.1           1.0       1.0X
[info] java                                                 29             30           1       3393.4           0.3       3.2X
[info]
[info] dscal:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 156            165           5        643.0           1.6       1.0X
[info] java                                                150            159           5        667.1           1.5       1.0X
[info]
[info] sscal:                                    Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                  85             91           6       1171.0           0.9       1.0X
[info] java                                                 75             79           3       1340.6           0.7       1.1X
[info]
[info] dspmv[U]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0        917.0           1.1       1.0X
[info] java                                                  0              0           0       8147.2           0.1       8.9X
[info]
[info] dspr[U]:                                  Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0        859.3           1.2       1.0X
[info] java                                                  1              1           0        859.3           1.2       1.0X
[info]
[info] dsyr[U]:                                  Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0        482.1           2.1       1.0X
[info] java                                                  1              1           0        482.6           2.1       1.0X
[info]
[info] dgemv[N]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   0              0           0       2214.2           0.5       1.0X
[info] java                                                  0              0           0       7975.8           0.1       3.6X
[info]
[info] dgemv[T]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0       1231.4           0.8       1.0X
[info] java                                                  0              0           0       8680.9           0.1       7.0X
[info]
[info] sgemv[N]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   0              0           0       2684.3           0.4       1.0X
[info] java                                                  0              0           0      18527.1           0.1       6.9X
[info]
[info] sgemv[T]:                                 Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                   1              1           0       1235.4           0.8       1.0X
[info] java                                                  0              0           0      17347.9           0.1      14.0X
[info]
[info] dgemm[N,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 530            552          18       1887.5           0.5       1.0X
[info] java                                                 58             64           3      17143.9           0.1       9.1X
[info]
[info] dgemm[N,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 598            620          17       1671.1           0.6       1.0X
[info] java                                                 58             64           3      17196.6           0.1      10.3X
[info]
[info] dgemm[T,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 834            847          14       1199.4           0.8       1.0X
[info] java                                                 57             63           4      17486.9           0.1      14.6X
[info]
[info] dgemm[T,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                1338           1366          22        747.3           1.3       1.0X
[info] java                                                 58             63           3      17356.6           0.1      23.2X
[info]
[info] sgemm[N,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 489            501           9       2045.5           0.5       1.0X
[info] java                                                 36             38           2      27721.9           0.0      13.6X
[info]
[info] sgemm[N,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 478            488           9       2094.0           0.5       1.0X
[info] java                                                 36             38           2      27813.2           0.0      13.3X
[info]
[info] sgemm[T,N]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 825            837          10       1211.6           0.8       1.0X
[info] java                                                 35             38           2      28433.1           0.0      23.5X
[info]
[info] sgemm[T,T]:                               Best Time(ms)   Avg Time(ms)   Stdev(ms)    Rate(M/s)   Per Row(ns)   Relative
[info] ------------------------------------------------------------------------------------------------------------------------
[info] f2j                                                 900            918          15       1111.6           0.9       1.0X
[info] java                                                 36             38           2      28073.0           0.0      25.3X
```

[2] https://github.com/luhenry/netlib/tree/master/blas/src/test/java/dev/ludovic/netlib/blas

Closes #32253 from luhenry/master.

Authored-by: Ludovic Henry <git@ludovic.dev>
Signed-off-by: Sean Owen <srowen@gmail.com>
2021-04-27 14:00:59 -05:00
yangjie01 c7e18ad223 [SPARK-35132][BUILD][CORE] Upgrade netty-all to 4.1.63.Final
### What changes were proposed in this pull request?
There are 3 CVE problems were found after netty 4.1.51.Final as follows:

- [CVE-2021-21409](https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2021-21409)
- [CVE-2021-21295](https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2021-21295)
- [CVE-2021-21290](https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2021-21290)

So the main change of this pr is upgrade netty-all to 4.1.63.Final avoid these potential risks.

Another change is to clean up deprecated api usage: [Tiny caches have been merged into small caches](https://github.com/netty/netty/blob/4.1/buffer/src/main/java/io/netty/buffer/PooledByteBufAllocator.java#L447-L455)(after [netty#10267](https://github.com/netty/netty/pull/10267)) and [should use  PooledByteBufAllocator(boolean, int, int, int, int, int, int, boolean, int)](https://github.com/netty/netty/blob/4.1/buffer/src/main/java/io/netty/buffer/PooledByteBufAllocator.java#L227-L239) api to create `PooledByteBufAllocator`.

### Why are the changes needed?
Upgrade netty-all to 4.1.63.Final avoid CVE problems.

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Pass the Jenkins or GitHub Action

Closes #32227 from LuciferYang/SPARK-35132.

Authored-by: yangjie01 <yangjie01@baidu.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2021-04-20 18:28:43 -05:00
Dongjoon Hyun 425dc58c02 [SPARK-35125][K8S] Upgrade K8s client to 5.3.0 to support K8s 1.20
### What changes were proposed in this pull request?

Although AS-IS master branch already works with K8s 1.20, this PR aims to upgrade K8s client to 5.3.0 to support K8s 1.20 officially.
- https://github.com/fabric8io/kubernetes-client#compatibility-matrix

The following are the notable breaking API changes.

1. Remove Doneable (5.0+):
    - https://github.com/fabric8io/kubernetes-client/pull/2571
2. Change Watcher.onClose signature (5.0+):
    - https://github.com/fabric8io/kubernetes-client/pull/2616
3. Change Readiness (5.1+)
    - https://github.com/fabric8io/kubernetes-client/pull/2796

### Why are the changes needed?

According to the compatibility matrix, this makes Apache Spark and its external cluster manager extension support all K8s 1.20 features officially for Apache Spark 3.2.0.

### Does this PR introduce _any_ user-facing change?

Yes, this is a dev dependency change which affects K8s cluster extension users.

### How was this patch tested?

Pass the CIs.

This is manually tested with K8s IT.
```
KubernetesSuite:
- Run SparkPi with no resources
- Run SparkPi with a very long application name.
- Use SparkLauncher.NO_RESOURCE
- Run SparkPi with a master URL without a scheme.
- Run SparkPi with an argument.
- Run SparkPi with custom labels, annotations, and environment variables.
- All pods have the same service account by default
- Run extraJVMOptions check on driver
- Run SparkRemoteFileTest using a remote data file
- Verify logging configuration is picked from the provided SPARK_CONF_DIR/log4j.properties
- Run SparkPi with env and mount secrets.
- Run PySpark on simple pi.py example
- Run PySpark to test a pyfiles example
- Run PySpark with memory customization
- Run in client mode.
- Start pod creation from template
- PVs with local storage
- Launcher client dependencies
- SPARK-33615: Launcher client archives
- SPARK-33748: Launcher python client respecting PYSPARK_PYTHON
- SPARK-33748: Launcher python client respecting spark.pyspark.python and spark.pyspark.driver.python
- Launcher python client dependencies using a zip file
- Test basic decommissioning
- Test basic decommissioning with shuffle cleanup
- Test decommissioning with dynamic allocation & shuffle cleanups
- Test decommissioning timeouts
- Run SparkR on simple dataframe.R example
Run completed in 17 minutes, 44 seconds.
Total number of tests run: 27
Suites: completed 2, aborted 0
Tests: succeeded 27, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
```

Closes #32221 from dongjoon-hyun/SPARK-K8S-530.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-04-19 07:39:38 -07:00
Dongjoon Hyun 7f6dee8c86 [MINOR][INFRA] Upgrade Jira client to 2.0.0
### What changes were proposed in this pull request?

SPARK-10498 added the initial Jira client requirement with 1.0.3 five year ago (2016 January). As of today, it causes `dev/merge_spark_pr.py` failure with `Python 3.9.4` due to this old dependency. This PR aims to upgrade it to the latest version, 2.0.0. The latest version is also a little old (2018 July).
- https://pypi.org/project/jira/#history

### Why are the changes needed?

`Jira==2.0.0` works well with both Python 3.8/3.9 while `Jira==1.0.3` fails with Python 3.9.

**BEFORE**
```
$ pyenv global 3.9.4
$ pip freeze | grep jira
jira==1.0.3
$ dev/merge_spark_pr.py
Traceback (most recent call last):
  File "/Users/dongjoon/APACHE/spark-merge/dev/merge_spark_pr.py", line 39, in <module>
    import jira.client
  File "/Users/dongjoon/.pyenv/versions/3.9.4/lib/python3.9/site-packages/jira/__init__.py", line 5, in <module>
    from .config import get_jira
  File "/Users/dongjoon/.pyenv/versions/3.9.4/lib/python3.9/site-packages/jira/config.py", line 17, in <module>
    from .client import JIRA
  File "/Users/dongjoon/.pyenv/versions/3.9.4/lib/python3.9/site-packages/jira/client.py", line 165
    validate=False, get_server_info=True, async=False, logging=True, max_retries=3):
                                          ^
SyntaxError: invalid syntax
```

**AFTER**
```
$ pip install jira==2.0.0
$ dev/merge_spark_pr.py
git rev-parse --abbrev-ref HEAD
Which pull request would you like to merge? (e.g. 34):
```

### Does this PR introduce _any_ user-facing change?

No. This is a committer-only script.

### How was this patch tested?

Manually.

Closes #32215 from dongjoon-hyun/jira.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-18 11:34:24 +09:00
Xinrong Meng 4aee19efb4 [SPARK-35032][PYTHON] Port Koalas Index unit tests into PySpark
### What changes were proposed in this pull request?
Now that we merged the Koalas main code into the PySpark code base (#32036), we should port the Koalas Index unit tests to PySpark.

### Why are the changes needed?
Currently, the pandas-on-Spark modules are not tested fully. We should enable the Index unit tests.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Enable Index unit tests.

Closes #32139 from xinrong-databricks/port.indexes_tests.

Authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-16 08:53:30 +09:00
xinrong-databricks 58feb85145 [SPARK-35034][PYTHON] Port Koalas miscellaneous unit tests into PySpark
### What changes were proposed in this pull request?
Now that we merged the Koalas main code into the PySpark code base (#32036), we should port the Koalas miscellaneous unit tests to PySpark.

### Why are the changes needed?
Currently, the pandas-on-Spark modules are not tested fully. We should enable miscellaneous unit tests.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Enable miscellaneous unit tests.

Closes #32152 from xinrong-databricks/port.misc_tests.

Lead-authored-by: xinrong-databricks <47337188+xinrong-databricks@users.noreply.github.com>
Co-authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-15 11:45:15 +09:00
HyukjinKwon 3e218ade9c [SPARK-35061][BUILD] Upgrade pycodestyle from 2.6.0 to 2.7.0
### What changes were proposed in this pull request?

This PR bumps up the version of pycodestyle from 2.6.0 to 2.7.0 released a month ago.

### Why are the changes needed?

2.7.0 includes three major fixes below (see https://readthedocs.org/projects/pycodestyle/downloads/pdf/latest/):

- Fix physical checks (such as W191) at end of file. PR #961.
- Add --indent-size option (defaulting to 4). PR #970.
- W605: fix escaped crlf false positive on windows. PR #976

The first and third ones could be useful for dev to detect the styles.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

Manually tested locally.

Closes #32160 from HyukjinKwon/SPARK-35061.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-04-14 08:07:05 -07:00
Xinrong Meng 47d62af2a9 [SPARK-35035][PYTHON] Port Koalas internal implementation unit tests into PySpark
### What changes were proposed in this pull request?
Now that we merged the Koalas main code into the PySpark code base (#32036), we should port the Koalas internal implementation unit tests to PySpark.

### Why are the changes needed?
Currently, the pandas-on-Spark modules are not tested fully. We should enable the internal implementation unit tests.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Enable internal implementation unit tests.

Closes #32137 from xinrong-databricks/port.test_internal_impl.

Lead-authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Co-authored-by: xinrong-databricks <47337188+xinrong-databricks@users.noreply.github.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-14 13:59:33 +09:00
HyukjinKwon 2974b70d1e [SPARK-35048][INFRA] Distribute GitHub Actions workflows to fork repositories to share the resources
### What changes were proposed in this pull request?

This PR proposes to leverage the GitHub Actions resources from the forked repositories instead of using the resources in ASF organisation at GitHub.

This is how it works:

1. "Build and test" (`build_and_test.yml`)  triggers a build on any commit on any branch (except `branch-*.*`), which roughly means:
    - The original repository will trigger the build on any commits in `master` branch
    - The forked repository will trigger the build on any commit in any branch.
2. The build triggered in the forked repository will checkout the original repository's `master` branch locally, and merge the branch from the forked repository into the original repository's `master` branch locally.
  Therefore, the tests in the forked repository will run after being sync'ed with the original repository's `master` branch.
3. In the original repository, it triggers a workflow that detects the workflow triggered in the forked repository, and add a comment, to the PR, pointing out the workflow in forked repository.

In short, please see this example HyukjinKwon#34

1. You create a PR and your repository triggers the workflow. Your PR uses the resources allocated to you for testing.
2. Apache Spark repository finds your workflow, and links it in a comment in your PR

**NOTE** that we will still run the tests in the original repository for each commit pushed to `master` branch. This distributes the workflows only in PRs.

### Why are the changes needed?

ASF shares the resources across all the ASF projects, which makes the development slow down.
Please see also:
- Discussion in the buildsa.o mailing list: https://lists.apache.org/x/thread.html/r48d079eeff292254db22705c8ef8618f87ff7adc68d56c4e5d0b4105%3Cbuilds.apache.org%3E
- Infra ticket: https://issues.apache.org/jira/browse/INFRA-21646

By distributing the workflows to use author's resources, we can get around this issue.

### Does this PR introduce _any_ user-facing change?

No, this is a dev-only change.

### How was this patch tested?

Manually tested at https://github.com/HyukjinKwon/spark/pull/34 and https://github.com/HyukjinKwon/spark/pull/33.

Closes #32092 from HyukjinKwon/poc-fork-resources.

Lead-authored-by: HyukjinKwon <gurwls223@apache.org>
Co-authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-14 13:28:11 +09:00
Xinrong Meng cd1e8e8158 [SPARK-35033][PYTHON] Port Koalas plot unit tests into PySpark
### What changes were proposed in this pull request?
Now that we merged the Koalas main code into the PySpark code base (#32036), we should port the Koalas plot unit tests to PySpark.

### Why are the changes needed?
Currently, the pandas-on-Spark modules are not tested fully. We should enable the plot unit tests.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Enable plot unit tests.

Closes #32151 from xinrong-databricks/port.plot_tests.

Authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-14 13:20:16 +09:00
Xinrong Meng 8ebc3fca8c [SPARK-35012][PYTHON] Port Koalas DataFrame-related unit tests into PySpark
### What changes were proposed in this pull request?
Now that we merged the Koalas main code into the PySpark code base (#32036), we should port the Koalas DataFrame-related unit tests to PySpark.

### Why are the changes needed?
Currently, the pandas-on-Spark modules are not fully tested. We should enable the DataFrame-related unit tests first.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Enable DataFrame-related unit tests.

Closes #32131 from xinrong-databricks/port.test_dataframe_related.

Lead-authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Co-authored-by: xinrong-databricks <47337188+xinrong-databricks@users.noreply.github.com>
Signed-off-by: Takuya UESHIN <ueshin@databricks.com>
2021-04-13 14:24:08 -07:00
Xinrong Meng a392633566 [SPARK-34996][PYTHON] Port Koalas Series-related unit tests into PySpark
### What changes were proposed in this pull request?
Now that we merged the Koalas main code into the PySpark code base (#32036), we should port the Koalas Series related unit tests to PySpark.

### Why are the changes needed?
Currently, the pandas-on-Spark modules are not fully tested. We should enable the Series related unit tests first.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Enable Series-related unit tests.

Closes #32117 from xinrong-databricks/port.test_series_related.

Lead-authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Co-authored-by: xinrong-databricks <47337188+xinrong-databricks@users.noreply.github.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-13 13:03:35 +09:00
Xinrong Meng 9c1f807549 [SPARK-35031][PYTHON] Port Koalas operations on different frames tests into PySpark
### What changes were proposed in this pull request?
Now that we merged the Koalas main code into the PySpark code base (#32036), we should port the Koalas operations on different frames unit tests to PySpark.

### Why are the changes needed?
Currently, the pandas-on-Spark modules are not tested fully. We should enable the operations on different frames unit tests.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Enable operations on different frames unit tests.

Closes #32133 from xinrong-databricks/port.test_ops_on_diff_frames.

Authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-13 11:22:51 +09:00
Xinrong Meng 3af2c1bb9c [SPARK-34886][PYTHON] Port/integrate Koalas DataFrame unit test into PySpark
### What changes were proposed in this pull request?
Now that we merged the Koalas main code into the PySpark code base (#32036), we should port the Koalas DataFrame unit test to PySpark.

### Why are the changes needed?
Currently, the pandas-on-Spark modules are not tested at all. We should enable the DataFrame unit test first.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Enable the DataFrame unit test.

Closes #32083 from xinrong-databricks/port.test_dataframe.

Authored-by: Xinrong Meng <xinrong.meng@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-09 15:48:13 +09:00
Takuya UESHIN 2635c3894f [SPARK-34972][PYTHON] Make pandas-on-Spark doctests work
### What changes were proposed in this pull request?

Now that we merged the Koalas main code into PySpark code base (#32036), we should enable doctests on the Spark's infrastructure.

### Why are the changes needed?

Currently the pandas-on-Spark modules are not tested at all.
We should enable doctests first, and we will port other unit tests separately later.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Enabled the whole doctests.

Closes #32069 from ueshin/issues/SPARK-34972/pyspark-pandas_doctests.

Authored-by: Takuya UESHIN <ueshin@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-07 20:50:41 +09:00
itholic caf04f9b77 [SPARK-34890][PYTHON] Port/integrate Koalas main codes into PySpark
### What changes were proposed in this pull request?

As a first step of [SPARK-34849](https://issues.apache.org/jira/browse/SPARK-34849), this PR proposes porting the Koalas main code into PySpark.

This PR contains minimal changes to the existing Koalas code as follows:
1. `databricks.koalas` -> `pyspark.pandas`
2. `from databricks import koalas as ks` -> `from pyspark import pandas as pp`
3. `ks.xxx -> pp.xxx`

Other than them:
1. Added a line to `python/mypy.ini` in order to ignore the mypy test. See related issue at [SPARK-34941](https://issues.apache.org/jira/browse/SPARK-34941).
2. Added a comment to several lines in several files to ignore the flake8 F401. See related issue at [SPARK-34943](https://issues.apache.org/jira/browse/SPARK-34943).

When this PR is merged, all the features that were previously used in [Koalas](https://github.com/databricks/koalas) will be available in PySpark as well.

Users can access to the pandas API in PySpark as below:

```python
>>> from pyspark import pandas as pp
>>> ppdf = pp.DataFrame({"A": [1, 2, 3], "B": [15, 20, 25]})
>>> ppdf
   A   B
0  1  15
1  2  20
2  3  25
```

The existing "options and settings" in Koalas are also available in the same way:

```python
>>> from pyspark.pandas.config import set_option, reset_option, get_option
>>> ppser1 = pp.Series([1, 2, 3])
>>> ppser2 = pp.Series([3, 4, 5])
>>> ppser1 + ppser2
Traceback (most recent call last):
...
ValueError: Cannot combine the series or dataframe because it comes from a different dataframe. In order to allow this operation, enable 'compute.ops_on_diff_frames' option.

>>> set_option("compute.ops_on_diff_frames", True)
>>> ppser1 + ppser2
0    4
1    6
2    8
dtype: int64
```

Please also refer to the [API Reference](https://koalas.readthedocs.io/en/latest/reference/index.html) and [Options and Settings](https://koalas.readthedocs.io/en/latest/user_guide/options.html) for more detail.

**NOTE** that this PR intentionally ports the main codes of Koalas first almost as are with minimal changes because:
- Koalas project is fairly large. Making some changes together for PySpark will make it difficult to review the individual change.
    Koalas dev includes multiple Spark committers who will review. By doing this, the committers will be able to more easily and effectively review and drive the development.
- Koalas tests and documentation require major changes to make it look great together with PySpark whereas main codes do not require.
- We lately froze the Koalas codebase, and plan to work together on the initial porting. By porting the main codes first as are, it unblocks the Koalas dev to work on other items in parallel.

I promise and will make sure on:
- Rename Koalas to PySpark pandas APIs and/or pandas-on-Spark accordingly in documentation, and the docstrings and comments in the main codes.
- Triage APIs to remove that don’t make sense when Koalas is in PySpark

The documentation changes will be tracked in [SPARK-34885](https://issues.apache.org/jira/browse/SPARK-34885), the test code changes will be tracked in [SPARK-34886](https://issues.apache.org/jira/browse/SPARK-34886).

### Why are the changes needed?

Please refer to:
- [[DISCUSS] Support pandas API layer on PySpark](http://apache-spark-developers-list.1001551.n3.nabble.com/DISCUSS-Support-pandas-API-layer-on-PySpark-td30945.html)
- [[VOTE] SPIP: Support pandas API layer on PySpark](http://apache-spark-developers-list.1001551.n3.nabble.com/VOTE-SPIP-Support-pandas-API-layer-on-PySpark-td30996.html)

### Does this PR introduce _any_ user-facing change?

Yes, now users can use the pandas APIs on Spark

### How was this patch tested?

Manually tested for exposed major APIs and options as described above.

### Koalas contributors

Koalas would not have been possible without the following contributors:

ueshin
HyukjinKwon
rxin
xinrong-databricks
RainFung
charlesdong1991
harupy
floscha
beobest2
thunterdb
garawalid
LucasG0
shril
deepyaman
gioa
fwani
90jam
thoo
AbdealiJK
abishekganesh72
gliptak
DumbMachine
dvgodoy
stbof
nitlev
hjoo
gatorsmile
tomspur
icexelloss
awdavidson
guyao
akhilputhiry
scook12
patryk-oleniuk
tracek
dennyglee
athena15
gstaubli
WeichenXu123
hsubbaraj
lfdversluis
ktksq
shengjh
margaret-databricks
LSturtew
sllynn
manuzhang
jijosg
sadikovi

Closes #32036 from itholic/SPARK-34890.

Authored-by: itholic <haejoon.lee@databricks.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-04-06 12:42:39 +09:00
Yuming Wang cbffc12f90 [SPARK-34542][BUILD] Upgrade Parquet to 1.12.0
### What changes were proposed in this pull request?

Parquet 1.12.0 New Feature
- PARQUET-41 - Add bloom filters to parquet statistics
- PARQUET-1373 - Encryption key management tools
- PARQUET-1396 - Example of using EncryptionPropertiesFactory and DecryptionPropertiesFactory
- PARQUET-1622 - Add BYTE_STREAM_SPLIT encoding
- PARQUET-1784 - Column-wise configuration
- PARQUET-1817 - Crypto Properties Factory
- PARQUET-1854 - Properties-Driven Interface to Parquet Encryption

Parquet 1.12.0 release notes:
https://github.com/apache/parquet-mr/blob/apache-parquet-1.12.0/CHANGES.md

### Why are the changes needed?

- Bloom filters to improve filter performance
- ZSTD enhancement

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Existing unit test.

Closes #31649 from wangyum/SPARK-34542.

Lead-authored-by: Yuming Wang <yumwang@ebay.com>
Co-authored-by: Yuming Wang <yumwang@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-03-27 07:56:29 -07:00
Ismaël Mejía 8a552bfc76 [SPARK-34778][BUILD] Upgrade to Avro 1.10.2
### What changes were proposed in this pull request?
Update the  Avro version to 1.10.2

### Why are the changes needed?
To stay up to date with upstream and catch compatibility issues with zstd

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Unit tests

Closes #31866 from iemejia/SPARK-27733-upgrade-avro-1.10.2.

Authored-by: Ismaël Mejía <iemejia@gmail.com>
Signed-off-by: Yuming Wang <yumwang@ebay.com>
2021-03-22 19:30:14 +08:00
Zhang, Xingchao 2888d1883e [SPARK-34784][BUILD] Upgrade Jackson to 2.12.2
### What changes were proposed in this pull request?

This pr upgrade Jackson to 2.12.2.
Jackson Release 2.12: https://github.com/FasterXML/jackson/wiki/Jackson-Release-2.12

### Why are the changes needed?

Make it easy to upgrade Avro 1.10.2.

```
[error] Caused by: sbt.ForkMain$ForkError: com.fasterxml.jackson.databind.JsonMappingException: Scala module 2.11.4 requires Jackson Databind version >= 2.11.0 and < 2.12.0
[error] 	at com.fasterxml.jackson.module.scala.JacksonModule.setupModule(JacksonModule.scala:61)
[error] 	at com.fasterxml.jackson.module.scala.JacksonModule.setupModule$(JacksonModule.scala:46)
[error] 	at com.fasterxml.jackson.module.scala.DefaultScalaModule.setupModule(DefaultScalaModule.scala:17)
```

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Tested with Avro 1.10.2 and Parquet 1.12.0: https://github.com/apache/spark/runs/2157735537

Closes #31878 from xclyfe/SPARK-34784.

Authored-by: Zhang, Xingchao <xingczhang@ebay.com>
Signed-off-by: Yuming Wang <yumwang@ebay.com>
2021-03-21 15:36:38 +08:00
Kousuke Saruta c5cadfefdf [SPARK-34762][BUILD] Fix the build failure with Scala 2.13 which is related to commons-cli
### What changes were proposed in this pull request?

This PR fixes the build failure with Scala 2.13 which is related to `commons-cli`.
The last few days, build with Scala 2.13 on GA continues to fail and the error message says like as follows.
```
[error] /home/runner/work/spark/spark/sql/hive-thriftserver/src/main/java/org/apache/hive/service/server/HiveServer2.java:26:1:  error: package org.apache.commons.cli does not exist
1278[error] import org.apache.commons.cli.GnuParser;
```
The reason is that `mvn help` in `change-scala-version.sh` downloads the POM file of `commons-cli` but doesn't download the JAR file, leading the build failure.

This PR also adds `commons-cli` to the dependencies explicitly because HiveThriftServer depends on it.
### Why are the changes needed?

Expect to fix the build failure with Scala 2.13.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

I confirmed that build successfully finishes with Scala 2.13 on my laptop.
```
find ~/.m2 -name commons-cli -exec rm -rf {} \;
find ~/.ivy2 -name commons-cli -exec rm -rf {} \;
find ~/.cache/ -name commons-cli -exec rm -rf {} \; // For Linux
find ~/Library/Caches -name commons-cli -exec rm -rf {} \; // For macOS

dev/change-scala-version 2.13
./build/sbt -Pyarn -Pmesos -Pkubernetes -Phive -Phive-thriftserver -Phadoop-cloud -Pkinesis-asl -Pdocker-integration-tests -Pkubernetes-integration-tests -Pspark-ganglia-lgpl -Pscala-2.13 clean compile test:compile
```

Closes #31862 from sarutak/commons-cli.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-03-18 12:31:50 +09:00
wankunde 60e324aa9f [SPARK-34688][PYTHON] Upgrade to Py4J 0.10.9.2
### What changes were proposed in this pull request?
This PR upgrade Py4J from 0.10.9.1 to 0.10.9.2 that contains some bug fixes and improvements.

* expose shell parameter in Popen inside launch_gateway. ([bartdag/py4j220efc3](220efc3716))
* fixed Flake8 errors ([bartdag/py4j6c6ee9a](6c6ee9aedc))

### Why are the changes needed?
To leverage fixes from the upstream in Py4J.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Jenkins build and GitHub Actions will test it out.

Closes #31796 from wankunde/py4j.

Authored-by: wankunde <wankunde@163.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2021-03-11 09:51:41 -06:00
Sean Owen 5e120e4651 [SPARK-34507][BUILD] Update scala.version in parent POM when changing Scala version for cross-build
### What changes were proposed in this pull request?

The `change-scala-version.sh` script updates Scala versions across the build for cross-build purposes. It manually changes `scala.binary.version` but not `scala.version`.

### Why are the changes needed?

It seems that this has always been an oversight, and the cross-built builds of Spark have an incorrect scala.version. See 2.4.5's 2.12 POM for example, which shows a Scala 2.11 version.
https://search.maven.org/artifact/org.apache.spark/spark-core_2.12/2.4.5/pom

More comments in the JIRA.

### Does this PR introduce _any_ user-facing change?

Should be a build-only bug fix.

### How was this patch tested?

Existing tests, but really N/A

Closes #31801 from srowen/SPARK-34507.

Authored-by: Sean Owen <srowen@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-03-11 10:02:24 +09:00
Dongjoon Hyun ba7e525a11 [SPARK-34670][BUILD] Upgrade ZSTD-JNI to 1.4.9-1
### What changes were proposed in this pull request?

This PR aims to upgrade ZSTD-JNI to 1.4.9-1.

### Why are the changes needed?

ZStandard 1.4.9 and its corresponding JNI brings the following bug fixes and improvements.
- https://github.com/facebook/zstd/releases/tag/v1.4.9

One of notable improvement of ZStandard 1.4.9 is `2x faster Long Distance Mode`, but we are not using it yet.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the CIs with the existing tests and there is no regression in ZStandardBenchmark.

Closes #31784 from dongjoon-hyun/ZSTD-149.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-03-08 22:40:49 -08:00
HyukjinKwon 2526fdea48 [SPARK-34657][PYTHON][DOCS] Replace the tag of release to the hash to hide RC tags in Binder
### What changes were proposed in this pull request?

Currently Binder link at Spark 3.1.1 (https://mybinder.org/v2/gh/apache/spark/v3.1.1-rc3?filepath=python%2Fdocs%2Fsource%2Fgetting_started%2Fquickstart.ipynb) shows  `v3.1.1-rc3` like:
![Screen Shot 2021-03-08 at 10 10 55 AM](https://user-images.githubusercontent.com/6477701/110262729-ecb70880-7ff7-11eb-92ba-f151d74985a6.png)

After the fix, it will shows the explicit hash:

![Screen Shot 2021-03-08 at 10 17 25 AM](https://user-images.githubusercontent.com/6477701/110262740-f476ad00-7ff7-11eb-8632-5b418ff87024.png)

In addition, this also fixes the examples URL while I am fixing it. For example: https://github.com/apache/spark/tree/v3.1.1-rc3/examples/src/main/python -> https://github.com/apache/spark/tree/1d550c4e902/examples/src/main/python

Note that it is hash in order to make both dev and release easier.

### Why are the changes needed?

To hide RC tags.

### Does this PR introduce _any_ user-facing change?

It will just change the URL shown when Binder is being loaded.

### How was this patch tested?

Manually tested:

```bash
make clean html
```

![Screen Shot 2021-03-08 at 10 17 06 AM](https://user-images.githubusercontent.com/6477701/110262813-2ee04a00-7ff8-11eb-9983-c4484f7832c4.png)

```bash
git_hash=`git rev-parse --short HEAD`
export GIT_HASH=$git_hash
make clean html
```

![Screen Shot 2021-03-08 at 10 17 25 AM](https://user-images.githubusercontent.com/6477701/110262805-2982ff80-7ff8-11eb-8560-e1e2aa7b263a.png)

Closes #31773 from HyukjinKwon/SPARK-34657.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-03-08 10:48:17 +09:00
Dongjoon Hyun 1f6089b165 [SPARK-34647][CORE] Use ZSTD JNI NoFinalizer classes and bump to 1.4.8-7
### What changes were proposed in this pull request?

This PR aims to use `ZstdInputStreamNoFinalizer` and `ZstdOutputStreamNoFinalizer` classes and upgrade ZSTD JNI to 1.4.8-7.

### Why are the changes needed?

`1.4.8-7` makes `NoFinalizer` classes public again. This improves the performance.
- 57d53a09d2

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the CIs.

Closes #31762 from dongjoon-hyun/SPARK-ZSTD-NOFINALIZER.

Lead-authored-by: Dongjoon Hyun <dhyun@apple.com>
Co-authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-03-06 10:32:27 -08:00
Yikun Jiang 85b50d4258 [SPARK-34539][BUILD][INFRA] Remove stand-alone version Zinc server
### What changes were proposed in this pull request?
Cleanup all Zinc standalone server code, and realated coniguration.

### Why are the changes needed?
![image](https://user-images.githubusercontent.com/1736354/109154790-c1d3e580-77a9-11eb-8cde-835deed6e10e.png)
- Zinc is the incremental compiler to speed up builds of compilation.
- The scala-maven-plugin is the mave plugin, which is used by Spark, one of the function is to integrate the Zinc to enable the incremental compiler.
- Since Spark v3.0.0 ([SPARK-28759](https://issues.apache.org/jira/browse/SPARK-28759)), the scala-maven-plugin is upgraded to v4.X, that means Zinc v0.3.13 standalone server is useless anymore.

However, we still download, install, start the standalone Zinc server. we should remove all zinc standalone server code, and all related configuration.

See more in [SPARK-34539](https://issues.apache.org/jira/projects/SPARK/issues/SPARK-34539) or the doc [Zinc standalone server is useless after scala-maven-plugin 4.x](https://docs.google.com/document/d/1u4kCHDx7KjVlHGerfmbcKSB0cZo6AD4cBdHSse-SBsM).

### Does this PR introduce _any_ user-facing change?
No

### How was this patch tested?
Run any mvn build:
./build/mvn -DskipTests clean package -pl core
You could see the increamental compilation is still working, the stage of "scala-maven-plugin:4.3.0:compile (scala-compile-first)" with incremental compilation info, like:
```
[INFO] --- scala-maven-plugin:4.3.0:testCompile (scala-test-compile-first)  spark-core_2.12 ---
[INFO] Using incremental compilation using Mixed compile order
[INFO] Compiler bridge file: /root/.sbt/1.0/zinc/org.scala-sbt/org.scala-sbt-compiler-bridge_2.12-1.3.1-bin_2.12.10__52.0-1.3.1_20191012T045515.jar
[INFO] compiler plugin: BasicArtifact(com.github.ghik,silencer-plugin_2.12.10,1.6.0,null)
[INFO] Compiling 303 Scala sources and 27 Java sources to /root/spark/core/target/scala-2.12/test-classes ...
```

Closes #31647 from Yikun/cleanup-zinc.

Authored-by: Yikun Jiang <yikunkero@gmail.com>
Signed-off-by: Sean Owen <srowen@gmail.com>
2021-03-01 08:39:38 -06:00
Kousuke Saruta a6cc5e625f [SPARK-34574][DOCS] Jekyll fails to generate Scala API docs for Scala 2.13
### What changes were proposed in this pull request?

This PR fixes an issue that `bundler exec jekyll` build fails to generate Scala API docs even though after `dev/change-scala-version.sh 2.13` run.

### Why are the changes needed?

The reason of this issue is that `build/sbt` in `copy_api_dirs.rb` runs without `-Pscala-2.13`.
So, it's a bug.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

I tested the following patterns manually.

* `dev/change-scala-version 2.13` and then `bundler exec jekyll build`
* `dev/change-scala-version 2.12` to change back to Scala 2.12 and then `bundler exec jekyll build`
* `dev/change-scala-version 2.13` two times to confirm the idempotency and then `bundler exec jekyll build`
* `dev/change-scala-version 2.12` two times to confirm the idempotency and then `bundler exec jekyll build`

Closes #31690 from sarutak/jekyll-scala-2.13.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-03-01 15:36:33 +09:00
Chao Sun f494c5cff9 [SPARK-33212][FOLLOWUP] Add hadoop-yarn-server-web-proxy for Hadoop 3.x profile
### What changes were proposed in this pull request?

This adds `hadoop-yarn-server-web-proxy` as dependency for Yarn and Hadoop 3.x profile (it is already a dependency for 2.x). Also excludes some dependencies from the module which are already covered by other Hadoop jars used by Spark.

### Why are the changes needed?

The class `org.apache.hadoop.yarn.server.webproxy.amfilter.AmIpFilter` is used by `ApplicationMaster`:
```scala
  private def addAmIpFilter(driver: Option[RpcEndpointRef], proxyBase: String) = {
    val amFilter = "org.apache.hadoop.yarn.server.webproxy.amfilter.AmIpFilter"
    val params = client.getAmIpFilterParams(yarnConf, proxyBase)
    driver match {
      case Some(d) =>
        d.send(AddWebUIFilter(amFilter, params, proxyBase))
   ...
```
and will be loaded at runtime. Therefore, without the above jar Spark Yarn app will fail with `ClassNotFoundError`.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Existing unit tests. Also tested manually and it worked with the fix, while was failing previously.

Closes #31642 from sunchao/SPARK-33212-followup-2.

Authored-by: Chao Sun <sunchao@apple.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2021-02-28 16:37:49 -08:00
Dongjoon Hyun 1aeafb4852 [SPARK-34559][BUILD] Upgrade to ZSTD JNI 1.4.8-6
### What changes were proposed in this pull request?

This PR aims to upgrade ZSTD JNI to 1.4.8-6.

### Why are the changes needed?

This fixes the following issue and will unblock SPARK-34479 (Support ZSTD at Avro data source).
- https://github.com/luben/zstd-jni/issues/161

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the CIs.

Closes #31674 from dongjoon-hyun/SPARK-34559.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2021-02-27 03:04:12 -08:00
HyukjinKwon 8d68f3f746 [MINOR] Add more known translations of contributors
### What changes were proposed in this pull request?

This PR adds some more known translations of contributors who contributed multiple times in Spark 3.1.1.

### Why are the changes needed?

To make release process easier.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

N/A (auto-generated)

Closes #31665 from HyukjinKwon/minor-add-known-translations.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-02-27 01:02:11 +09:00
HyukjinKwon ac774ec0c2 [SPARK-34553][INFRA] Rename GITHUB_API_TOKEN to GITHUB_OAUTH_KEY in translate-contributors.py
### What changes were proposed in this pull request?

This PR proposes to add an alias environment variable `GITHUB_OAUTH_KEY` for `GITHUB_API_TOKEN` in `translate-contributors.py` script.

### Why are the changes needed?

```
dev/github_jira_sync.py:GITHUB_OAUTH_KEY = os.environ.get("GITHUB_OAUTH_KEY")
dev/github_jira_sync.py:        request.add_header('Authorization', 'token %s' % GITHUB_OAUTH_KEY)
dev/github_jira_sync.py:        request.add_header('Authorization', 'token %s' % GITHUB_OAUTH_KEY)
dev/merge_spark_pr.py:GITHUB_OAUTH_KEY = os.environ.get("GITHUB_OAUTH_KEY")
dev/merge_spark_pr.py:        if GITHUB_OAUTH_KEY:
dev/merge_spark_pr.py:            request.add_header('Authorization', 'token %s' % GITHUB_OAUTH_KEY)
dev/run-tests-jenkins.py:    github_oauth_key = os.environ["GITHUB_OAUTH_KEY"]
```

Spark uses `GITHUB_OAUTH_KEY` for GitHub token, but `translate-contributors.py` script alone uses `GITHUB_API_TOKEN`. We should better match to make it easier to run the script

### Does this PR introduce _any_ user-facing change?

No, it's dev-only.

### How was this patch tested?

I manually tested by running this script.

Closes #31662 from HyukjinKwon/minor-gh-token-name.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-02-26 20:20:31 +09:00
HyukjinKwon 5b92531937 [SPARK-34551][INFRA] Fix credit related scripts to recover, drop Python 2 and work with Python 3
### What changes were proposed in this pull request?

This PR proposes to make the scripts working by:
- Recovering credit related scripts that were broken from https://github.com/apache/spark/pull/29563
    `raw_input` does not exist in `releaseutils` but only in Python 2
- Dropping Python 2 in these scripts because we dropped Python 2 in https://github.com/apache/spark/pull/28957
- Making these scripts workin with Python 3

### Why are the changes needed?

To unblock the release.

### Does this PR introduce _any_ user-facing change?

No, it's dev-only change.

### How was this patch tested?

I manually tested against Spark 3.1.1 RC3.

Closes #31660 from HyukjinKwon/SPARK-34551.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-02-26 20:19:33 +09:00
Dongjoon Hyun 0bccf1664f [SPARK-34496][BUILD] Upgrade ZSTD-JNI to 1.4.8-5 for better API compatibility
### What changes were proposed in this pull request?

This PR aims to upgrade ZSTD-JNI to 1.4.8-5 for better API compatibility.

### Why are the changes needed?

Previously, we upgrade for ZSTD-JNI performance improvement.
And, `Apache Spark`/`Apache Parquet`/`Apache Avro` master branches are using JZSTD-JNI 1.4.8-x.

This PR aims to upgrade a minor version for a better API compatibility.
- def1860c6f
- 188c803044

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the CIs

Closes #31609 from dongjoon-hyun/SPARK-34496.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-02-22 22:27:39 +09:00
Dongjoon Hyun 020e84e92f [SPARK-34486][K8S] Upgrade kubernetes-client to 4.13.2
### What changes were proposed in this pull request?

This PR aims to upgrade `kubernetes-client` library from 4.12.0 to 4.13.2 for Apache Spark 3.2.0.

### Why are the changes needed?

This will bring [K8s 1.19.1](https://github.com/fabric8io/kubernetes-client/pull/2541) models officially and the latest bug fixes.

- https://github.com/fabric8io/kubernetes-client/releases/tag/v4.13.0
- https://github.com/fabric8io/kubernetes-client/releases/tag/v4.13.1
- https://github.com/fabric8io/kubernetes-client/releases/tag/v4.13.2

### Does this PR introduce _any_ user-facing change?

No

### How was this patch tested?

Pass the K8s IT and UT.

```
KubernetesSuite:
- Run SparkPi with no resources
- Run SparkPi with a very long application name.
- Use SparkLauncher.NO_RESOURCE
- Run SparkPi with a master URL without a scheme.
- Run SparkPi with an argument.
- Run SparkPi with custom labels, annotations, and environment variables.
- All pods have the same service account by default
- Run extraJVMOptions check on driver
- Run SparkRemoteFileTest using a remote data file
- Verify logging configuration is picked from the provided SPARK_CONF_DIR/log4j.properties
- Run SparkPi with env and mount secrets.
- Run PySpark on simple pi.py example
- Run PySpark to test a pyfiles example
- Run PySpark with memory customization
- Run in client mode.
- Start pod creation from template
- PVs with local storage
- Launcher client dependencies
- SPARK-33615: Launcher client archives
- SPARK-33748: Launcher python client respecting PYSPARK_PYTHON
- SPARK-33748: Launcher python client respecting spark.pyspark.python and spark.pyspark.driver.python
- Launcher python client dependencies using a zip file
- Test basic decommissioning
- Test basic decommissioning with shuffle cleanup
- Test decommissioning with dynamic allocation & shuffle cleanups
- Test decommissioning timeouts
- Run SparkR on simple dataframe.R example
Run completed in 19 minutes, 25 seconds.
Total number of tests run: 27
Suites: completed 2, aborted 0
Tests: succeeded 27, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
```

Closes #31602 from dongjoon-hyun/SPARK-34486.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-02-21 18:35:38 +09:00
Dongjoon Hyun 331c6fd4ef [SPARK-34467][BUILD] Upgrade Zstd-jni to 1.4.8-4
### What changes were proposed in this pull request?

This PR aims to upgrade Zstd-JNI library to 1.4.8-4 to bring JNI side optimization.
`ZStandardBenchmark` shows that there is no regression in terms of performance and show some improvements.

### Why are the changes needed?

https://github.com/luben/zstd-jni/commits/v1.4.8-4
- be9be47fae
- be51ebade1
- 44ff8b6f95

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the CIs.

Closes #31585 from dongjoon-hyun/SPARK-ZSTD-1.4.8-4.

Lead-authored-by: Dongjoon Hyun <dhyun@apple.com>
Co-authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-02-18 13:35:49 -08:00
“attilapiros” bdcad33d8b [SPARK-34433][DOCS] Lock Jekyll version by Gemfile and Bundler
### What changes were proposed in this pull request?

Improving the documentation and release process by pinning Jekyll version by Gemfile and Bundler.

Some files and their responsibilities within this PR:
- `docs/.bundle/config` is used to specify a directory "docs/.local_ruby_bundle" which will be used as destination to install the ruby packages into instead of the global one which requires root access
- `docs/Gemfile` is specifying the required Jekyll version and other top level gem versions
- `docs/Gemfile.lock` is generated by the "bundle install". This file contains the exact resolved versions of all the gems including the top level gems and all the direct and transitive dependencies of those gems. When this file is generated it contains a platform related section "PLATFORMS" (in my case after the generation it was "universal-darwin-19"). Still this file must be under version control as when the version of a gem does not fit to the one specified in `Gemfile` an error comes (i.e. if the `Gemfile.lock` was generated for Jekyll 4.1.0 and its version is updated in the `Gemfile` to 4.2.0 then it triggers the error: "The bundle currently has jekyll locked at 4.1.0."). This is solution is also suggested officially in [its documentation](https://bundler.io/rationale.html#checking-your-code-into-version-control). To get rid of the specific platform (like "universal-darwin-19") first we have to add "ruby" as platform [which means this should work on every platform where Ruby runs](https://guides.rubygems.org/what-is-a-gem/)) by running "bundle lock --add-platform ruby" then the specific platform can be removed by "bundle lock --remove-platform universal-darwin-19".

After this the correct process to update Jekyll version is the following:
1. update the version in `Gemfile`
2. run "bundle update" which updates the `Gemfile.lock`
3. commit both files

This process for version update is tested for details please check the testing section.

### Why are the changes needed?

Using different Jekyll versions can generate different output documents.
This PR standardize the process.

### Does this PR introduce _any_ user-facing change?

No, assuming the release was done via docker by using `do-release-docker.sh`.
In that case  there should be no difference at all as the same Jekyll version is specified in the Gemfile.

### How was this patch tested?

#### Testing document generation

Doc generation step was triggered via  the docker release:

```
$ ./do-release-docker.sh -d ~/working -n -s docs
...
========================
= Building documentation...
Command: /opt/spark-rm/release-build.sh docs
Log file: docs.log
Skipping publish step.
```

The docs.log contains the followings:
```
Building Spark docs
Fetching gem metadata from https://rubygems.org/.........
Using bundler 2.2.9
Fetching rb-fsevent 0.10.4
Fetching forwardable-extended 2.6.0
Fetching public_suffix 4.0.6
Fetching colorator 1.1.0
Fetching eventmachine 1.2.7
Fetching http_parser.rb 0.6.0
Fetching ffi 1.14.2
Fetching concurrent-ruby 1.1.8
Installing colorator 1.1.0
Installing forwardable-extended 2.6.0
Installing rb-fsevent 0.10.4
Installing public_suffix 4.0.6
Installing http_parser.rb 0.6.0 with native extensions
Installing eventmachine 1.2.7 with native extensions
Installing concurrent-ruby 1.1.8
Fetching rexml 3.2.4
Fetching liquid 4.0.3
Installing ffi 1.14.2 with native extensions
Installing rexml 3.2.4
Installing liquid 4.0.3
Fetching mercenary 0.4.0
Installing mercenary 0.4.0
Fetching rouge 3.26.0
Installing rouge 3.26.0
Fetching safe_yaml 1.0.5
Installing safe_yaml 1.0.5
Fetching unicode-display_width 1.7.0
Installing unicode-display_width 1.7.0
Fetching webrick 1.7.0
Installing webrick 1.7.0
Fetching pathutil 0.16.2
Fetching kramdown 2.3.0
Fetching terminal-table 2.0.0
Fetching addressable 2.7.0
Fetching i18n 1.8.9
Installing terminal-table 2.0.0
Installing pathutil 0.16.2
Installing i18n 1.8.9
Installing addressable 2.7.0
Installing kramdown 2.3.0
Fetching kramdown-parser-gfm 1.1.0
Installing kramdown-parser-gfm 1.1.0
Fetching rb-inotify 0.10.1
Fetching sassc 2.4.0
Fetching em-websocket 0.5.2
Installing rb-inotify 0.10.1
Installing em-websocket 0.5.2
Installing sassc 2.4.0 with native extensions
Fetching listen 3.4.1
Installing listen 3.4.1
Fetching jekyll-watch 2.2.1
Installing jekyll-watch 2.2.1
Fetching jekyll-sass-converter 2.1.0
Installing jekyll-sass-converter 2.1.0
Fetching jekyll 4.2.0
Installing jekyll 4.2.0
Fetching jekyll-redirect-from 0.16.0
Installing jekyll-redirect-from 0.16.0
Bundle complete! 4 Gemfile dependencies, 30 gems now installed.
Bundled gems are installed into `./.local_ruby_bundle`
```

#### Testing Jekyll (or other gem) update

First locally I reverted Jekyll to 4.1.0:
```
$ rm Gemfile.lock
$ rm -rf .local_ruby_bundle

# edited Gemfile to use version 4.1.0
$ cat Gemfile
source "https://rubygems.org"

gem "jekyll", "4.1.0"
gem "rouge", "3.26.0"
gem "jekyll-redirect-from", "0.16.0"
gem "webrick", "1.7"
$ bundle install
...
```

Testing Jekyll version before the update:

```
$ bundle exec jekyll --version
jekyll 4.1.0
```

Imitating Jekyll update coming from git by reverting my local changes:

```
$ git checkout Gemfile
Updated 1 path from the index
$ cat Gemfile
source "https://rubygems.org"

gem "jekyll", "4.2.0"
gem "rouge", "3.26.0"
gem "jekyll-redirect-from", "0.16.0"
gem "webrick", "1.7"

$ git checkout Gemfile.lock
Updated 1 path from the index
```

Run the install:

```
$ bundle install
...
```

Checking the updated Jekyll version:
```
$ bundle exec jekyll --version
jekyll 4.2.0
```

Closes #31559 from attilapiros/pin-jekyll-version.

Lead-authored-by: “attilapiros” <piros.attila.zsolt@gmail.com>
Co-authored-by: Hyukjin Kwon <gurwls223@gmail.com>
Co-authored-by: Attila Zsolt Piros <2017933+attilapiros@users.noreply.github.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-02-18 12:17:57 +09:00
HyukjinKwon 556ecd681a [MINOR] Add a note about pip installation test in RC for release vote template
### What changes were proposed in this pull request?

This PR proposes to add a note about pip installation test in RC for release vote template.

### Why are the changes needed?

To promote PySpark users to test PyPi distribution and pip installation.

### Does this PR introduce _any_ user-facing change?

No. It will be used for release vote.

### How was this patch tested?

N/A

Closes #31527 from HyukjinKwon/minor-update-vote-templ.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-02-08 22:24:42 +09:00
Dongjoon Hyun 329f945534 [SPARK-34391][BUILD] Upgrade commons-io to 2.8.0
### What changes were proposed in this pull request?

This PR aims to upgrade `commons-io` from 2.5 to 2.8.0 for Apache Spark 3.2.0.

### Why are the changes needed?

`2.5` was released on 2016-04-22. This will bring the latest bug fixes.
- [2020-09-05: 2.8.0](https://commons.apache.org/proper/commons-io/changes-report.html#a2.8.0)
- [2020-05-24: 2.7](https://commons.apache.org/proper/commons-io/changes-report.html#a2.7)
- [2017-10-15: 2.6](https://commons.apache.org/proper/commons-io/changes-report.html#a2.6)

### Does this PR introduce _any_ user-facing change?

Yes, but this is a compatible dependency change.

### How was this patch tested?

Pass the CIs.

Closes #31503 from dongjoon-hyun/SPARK-34391.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-02-07 21:53:42 -08:00
William Hyun 5acc5b8f1e [SPARK-34323][BUILD] Upgrade zstd-jni to 1.4.8-3
### What changes were proposed in this pull request?

This PR aims to upgrade zstd-jni to 1.4.8-3.

### Why are the changes needed?

This will bring the latest improvements and bug fixes.

### Does this PR introduce _any_ user-facing change?
No.

### How was this patch tested?
Pass the CIs with the existing tests.

Closes #31430 from williamhyun/zstd-148.

Authored-by: William Hyun <williamhyun3@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-02-02 00:39:05 -08:00
David Toneian d99d0d27be [SPARK-34300][PYSPARK][DOCS][MINOR] Fix some typos and syntax issues in docstrings and output of dev/lint-python
This changeset is published into the public domain.

### What changes were proposed in this pull request?

Some typos and syntax issues in docstrings and the output of `dev/lint-python` have been fixed.

### Why are the changes needed?
In some places, the documentation did not refer to parameters or classes by the full and correct name, potentially causing uncertainty in the reader or rendering issues in Sphinx. Also, a typo in the standard output of `dev/lint-python` was fixed.

### Does this PR introduce _any_ user-facing change?

Slight improvements in documentation, and in standard output of `dev/lint-python`.

### How was this patch tested?

Manual testing and `dev/lint-python` run. No new Sphinx warnings arise due to this change.

Closes #31401 from DavidToneian/SPARK-34300.

Authored-by: David Toneian <david@toneian.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-02-02 09:30:50 +09:00
Yuming Wang a7683afdf4 [SPARK-26346][BUILD][SQL] Upgrade Parquet to 1.11.1
### What changes were proposed in this pull request?

This PR upgrade Parquet to 1.11.1.

Parquet 1.11.1 new features:

- [PARQUET-1201](https://issues.apache.org/jira/browse/PARQUET-1201) - Column indexes
- [PARQUET-1253](https://issues.apache.org/jira/browse/PARQUET-1253) - Support for new logical type representation
- [PARQUET-1388](https://issues.apache.org/jira/browse/PARQUET-1388) - Nanosecond precision time and timestamp - parquet-mr

More details:
https://github.com/apache/parquet-mr/blob/apache-parquet-1.11.1/CHANGES.md

### Why are the changes needed?
Support column indexes to improve query performance.

### Does this PR introduce any user-facing change?
No.

### How was this patch tested?
Existing test.

Closes #26804 from wangyum/SPARK-26346.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Yuming Wang <yumwang@ebay.com>
2021-01-29 08:07:49 +08:00
HyukjinKwon 1217c8b418 Revert "[SPARK-31168][SPARK-33913][BUILD] Upgrade Scala to 2.12.13 and Kafka to 2.7.0"
This reverts commit a65e86a65e.
2021-01-27 17:03:15 +09:00
Dongjoon Hyun 785d5822e5 [SPARK-34218][INFRA][FOLLOWUP] Fix Scala 2.13 profile typo in publish-snapshot
### What changes were proposed in this pull request?

This is a follow-up of #31311 and fixes a typo in Scala 2.13 profile section in `publish-snapshot` command.

### Why are the changes needed?

To fix snapshot publishing for Scala 2.13.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Manual.

Closes #31338 from dongjoon-hyun/SPARK-34218-2.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-01-26 15:11:07 +09:00
Dongjoon Hyun bdf71be0ff [SPARK-34218][INFRA] Add Scala 2.13 packaging and publishing
### What changes were proposed in this pull request?

This PR aims to add `Scala 2.13` packaging and publishing.

### Why are the changes needed?

To support Scala 2.13 officially in Apache Spark 3.2.0, we need to publish the artifacts.

### Does this PR introduce _any_ user-facing change?

Yes, this will provide additional artifacts.

### How was this patch tested?

Manual.

Closes #31311 from dongjoon-hyun/SPARK-34218.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-25 09:01:26 -08:00
Dongjoon Hyun b8fc6f88b5 [SPARK-34217][INFRA] Fix Scala 2.12 release profile
### What changes were proposed in this pull request?

This PR aims to fix the Scala 2.12 release profile in `release-build.sh`.

### Why are the changes needed?

Since 3.0.0 (SPARK-26132), the release script is using `SCALA_2_11_PROFILES` to publish Scala 2.12 artifacts.

After looking at the code, this is not a blocker because `-Pscala-2.11` is no-op in `branch-3.x`.
In addition `scala-2.12` profile is enabled by default and it's an empty profile without any configuration technically.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

This is used by release manager only.
Manually. This should land at `master/3.1/3.0`.

Closes #31310 from dongjoon-hyun/SPARK-34217.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-24 14:59:55 -08:00
Dongjoon Hyun d5d1c84bf4 [SPARK-34208][BUILD] Upgrade ORC to 1.6.7
### What changes were proposed in this pull request?

This PR aims to upgrade Apache ORC from 1.6.6 to 1.6.7.

### Why are the changes needed?

Apache ORC 1.6.7 has the following fixes including [ORC-711 Support CryptoExtension in create/decryptLocalKey](https://issues.apache.org/jira/browse/ORC-711).
- https://issues.apache.org/jira/secure/ReleaseNote.jspa?projectId=12318320&version=12349470

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Pass the CIs with the existing tests.

Closes #31301 from dongjoon-hyun/SPARK-34208.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-22 17:06:18 -08:00
Ismaël Mejía e9e81f798f [SPARK-27733][CORE] Upgrade Avro to version 1.10.1
### What changes were proposed in this pull request?

Update Avro dependency to version 1.10.1

### Why are the changes needed?

To catch up multiple improvements of Avro as well as fix security issues on transitive dependencies.

### Does this PR introduce _any_ user-facing change?

No

### How was this patch tested?

Since there were no API changes required we just run the tests

Closes #31232 from iemejia/SPARK-27733-avro-upgrade.

Authored-by: Ismaël Mejía <iemejia@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-20 15:42:27 -08:00
CodingCat 7f3e952c23 [SPARK-33940][BUILD] Upgrade univocity to 2.9.1
### What changes were proposed in this pull request?

upgrade univocity

### Why are the changes needed?

csv writer actually has an implicit limit on column name length due to univocity-parser 2.9.0,

when we initialize a writer e09114c687/src/main/java/com/univocity/parsers/common/AbstractWriter.java (L211), it calls toIdentifierGroupArray which calls valueOf in NormalizedString.java eventually (e09114c687/src/main/java/com/univocity/parsers/common/NormalizedString.java (L205-L209))

in that stringCache.get, it has a maxStringLength cap e09114c687/src/main/java/com/univocity/parsers/common/StringCache.java (L104) which is 1024 by default

more details at https://github.com/apache/spark/pull/30972 and https://github.com/uniVocity/univocity-parsers/issues/438

### Does this PR introduce _any_ user-facing change?

No

### How was this patch tested?
existing UT

Closes #31246 from CodingCat/upgrade_univocity.

Authored-by: CodingCat <zhunansjtu@gmail.com>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2021-01-20 11:40:37 +09:00
Dongjoon Hyun a65e86a65e [SPARK-31168][SPARK-33913][BUILD] Upgrade Scala to 2.12.13 and Kafka to 2.7.0
### What changes were proposed in this pull request?

This PR is the 3rd try to upgrade Scala 2.12.x in order to see the feasibility.
- https://github.com/apache/spark/pull/27929 (Upgrade Scala to 2.12.11, wangyum )
- https://github.com/apache/spark/pull/30940 (Upgrade Scala to 2.12.12, viirya )

`silencer` library is updated accordingly. And, Kafka version upgrade is required because it fails like the following.
```
[info] KafkaDataConsumerSuite:
[info] org.apache.spark.streaming.kafka010.KafkaDataConsumerSuite *** ABORTED *** (1 second, 580 milliseconds)
[info]   java.lang.NoClassDefFoundError: scala/math/Ordering$$anon$7
[info]   at kafka.api.ApiVersion$.orderingByVersion(ApiVersion.scala:45)
```

### Why are the changes needed?

Apache Spark was stuck to 2.12.10 due to the regression in Scala 2.12.11 and 2.12.12. This will bring all the bug fixes.
- https://github.com/scala/scala/releases/tag/v2.12.13
- https://github.com/scala/scala/releases/tag/v2.12.12
- https://github.com/scala/scala/releases/tag/v2.12.11

### Does this PR introduce _any_ user-facing change?

Yes, but this is a bug-fixed version.

### How was this patch tested?

Pass the CIs.

Closes #31223 from dongjoon-hyun/SPARK-31168.

Authored-by: Dongjoon Hyun <dhyun@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-18 13:45:06 -08:00
Yuming Wang c87b0085c9 [SPARK-33696][BUILD][SQL] Upgrade built-in Hive to 2.3.8
### What changes were proposed in this pull request?

Hive 2.3.8 changes:
HIVE-19662: Upgrade Avro to 1.8.2
HIVE-24324: Remove deprecated API usage from Avro
HIVE-23980: Shade Guava from hive-exec in Hive 2.3
HIVE-24436: Fix Avro NULL_DEFAULT_VALUE compatibility issue
HIVE-24512: Exclude calcite in packaging.
HIVE-22708: Fix for HttpTransport to replace String.equals
HIVE-24551: Hive should include transitive dependencies from calcite after shading it
HIVE-24553: Exclude calcite from test-jar dependency of hive-exec

### Why are the changes needed?

Upgrade Avro and Parquet to latest version.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Existing test add test try to upgrade Parquet to 1.11.1 and Avro to 1.10.1: https://github.com/apache/spark/pull/30517

Closes #30657 from wangyum/SPARK-33696.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-17 21:54:35 -08:00
Yuming Wang d6906b3b76 [SPARK-34110][BUILD] Upgrade Zookeeper to 3.6.2
### What changes were proposed in this pull request?

This PR upgrade Zookeeper to 3.6.2.

### Why are the changes needed?

To make Spark running on jdk 14, otherwise:
```
21/01/13 20:25:32,533 WARN [Driver-SendThread(apache-spark-zk-3.vip.hadoop.com:2181)] zookeeper.ClientCnxn:1164 : Session 0x0 for server apache-spark-zk-3.vip.hadoop.com/<unresolved>:2181, unexpected error, closing socket connection and attempting reconnect
java.lang.IllegalArgumentException: Unable to canonicalize address apache-spark-zk-3.vip.hadoop.com/<unresolved>:2181 because it's not resolvable
	at org.apache.zookeeper.SaslServerPrincipal.getServerPrincipal(SaslServerPrincipal.java:65)
	at org.apache.zookeeper.SaslServerPrincipal.getServerPrincipal(SaslServerPrincipal.java:41)
	at org.apache.zookeeper.ClientCnxn$SendThread.startConnect(ClientCnxn.java:1001)
	at org.apache.zookeeper.ClientCnxn$SendThread.run(ClientCnxn.java:1060)
```

Please see [ZOOKEEPER-3779](https://issues.apache.org/jira/browse/ZOOKEEPER-3779) for more details.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Manual test:
1. Replace zookeeper-3.4.14.jar with zookeeper-3.6.2.jar and zookeeper-jute-3.6.2.jar
2. Run Spark on jdk 14. Hadoop 2.7 with HADOOP-12760, Hive 1.2.1 and Zookeeper server version is 3.4.6.
    Some key configurations:
    ```
    # spark-defaults.conf
    spark.yarn.appMasterEnv.JAVA_HOME              /apache/releases/jdk-14.0.2
    spark.executorEnv.JAVA_HOME                    /apache/releases/jdk-14.0.2
    # spark-env.sh
    export JAVA_HOME=/apache/releases/jdk-14.0.2
    ```

Jenkins Tests
- Hadoop 3.2: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/134048/testReport
- Hadoop 2.7: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/134063/testReport

Closes #31177 from wangyum/SPARK-34110.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-15 21:12:41 -08:00
Chao Sun b6f46ca297 [SPARK-33212][BUILD] Upgrade to Hadoop 3.2.2 and move to shaded clients for Hadoop 3.x profile
### What changes were proposed in this pull request?

This:
1. switches Spark to use shaded Hadoop clients, namely hadoop-client-api and hadoop-client-runtime, for Hadoop 3.x.
2. upgrade built-in version for Hadoop 3.x to Hadoop 3.2.2

Note that for Hadoop 2.7, we'll still use the same modules such as hadoop-client.

In order to still keep default Hadoop profile to be hadoop-3.2, this defines the following Maven properties:

```
hadoop-client-api.artifact
hadoop-client-runtime.artifact
hadoop-client-minicluster.artifact
```

which default to:
```
hadoop-client-api
hadoop-client-runtime
hadoop-client-minicluster
```
but all switch to `hadoop-client` when the Hadoop profile is hadoop-2.7. A side affect from this is we'll import the same dependency multiple times. For this I have to disable Maven enforcer `banDuplicatePomDependencyVersions`.

Besides above, there are the following changes:
- explicitly add a few dependencies which are imported via transitive dependencies from Hadoop jars, but are removed from the shaded client jars.
- removed the use of `ProxyUriUtils.getPath` from `ApplicationMaster` which is a server-side/private API.
- modified `IsolatedClientLoader` to exclude `hadoop-auth` jars when Hadoop version is 3.x. This change should only matter when we're not sharing Hadoop classes with Spark (which is _mostly_ used in tests).

### Why are the changes needed?

Hadoop 3.2.2 is released with new features and bug fixes, so it's good for the Spark community to adopt it. However, latest Hadoop versions starting from Hadoop 3.2.1 have upgraded to use Guava 27+. In order to resolve Guava conflicts, this takes the approach by switching to shaded client jars provided by Hadoop. This also has the benefits of avoid pulling other 3rd party dependencies from Hadoop side so as to avoid more potential future conflicts.

### Does this PR introduce _any_ user-facing change?

When people use Spark with `hadoop-provided` option, they should make sure class path contains `hadoop-client-api` and `hadoop-client-runtime` jars. In addition, they may need to make sure these jars appear before other Hadoop jars in the order. Otherwise, classes may be loaded from the other non-shaded Hadoop jars and cause potential conflicts.

### How was this patch tested?

Relying on existing tests.

Closes #30701 from sunchao/test-hadoop-3.2.2.

Authored-by: Chao Sun <sunchao@apple.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-15 14:06:50 -08:00
Kousuke Saruta b1c4fc7fc7 [SPARK-34008][BUILD] Upgrade derby to 10.14.2.0
### What changes were proposed in this pull request?

This PR upgrades `derby` to `10.14.2.0`.

You can check the major changes from the following URLs.

* 10.13.1.1 http://svn.apache.org/repos/asf/db/derby/code/tags/10.13.1.1/RELEASE-NOTES.html
* 10.14.1.0 http://svn.apache.org/repos/asf/db/derby/code/tags/10.14.1.0/RELEASE-NOTES.html
* 10.14.2.0 http://svn.apache.org/repos/asf/db/derby/code/tags/10.14.2.0/RELEASE-NOTES.html

### Why are the changes needed?

It seems to be the final release which supports `JDK8` as the minimum required version.
After `10.15.1.3`, the minimum required version is `JDK9`.
https://db.apache.org/derby/

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Existing tests.

Closes #31032 from sarutak/upgrade-derby.

Authored-by: Kousuke Saruta <sarutak@oss.nttdata.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-05 21:50:16 -08:00
HyukjinKwon 6b86aa0b52 [SPARK-33984][PYTHON] Upgrade to Py4J 0.10.9.1
### What changes were proposed in this pull request?

This PR upgrade Py4J from 0.10.9 to 0.10.9.1 that contains some bug fixes and improvements.
It contains one bug fix (4152353ac1).

### Why are the changes needed?

To leverage fixes from the upstream in Py4J.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Jenkins build and GitHub Actions will test it out.

Closes #31009 from HyukjinKwon/SPARK-33984.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-04 10:23:38 -08:00
William Hyun bd346f4a2d [SPARK-33957][BUILD] Update commons-lang3 to 3.11
### What changes were proposed in this pull request?

This PR aims to update commons-lang3 to 3.11 to support Java 16+ better.

### Why are the changes needed?

commons-lang3 has the following bug fixes and Java 16 support.
- https://commons.apache.org/proper/commons-lang/changes-report.html#a3.11

### Does this PR introduce _any_ user-facing change?

N/A

### How was this patch tested?
Pass the CIs.

Closes #30990 from williamhyun/Commons-lang3.

Authored-by: William Hyun <williamhyun3@gmail.com>
Signed-off-by: Dongjoon Hyun <dhyun@apple.com>
2021-01-01 19:59:17 -08:00
Hyukjin Kwon 403bf55cbe [SPARK-33927][BUILD] Fix Dockerfile for Spark release to work
### What changes were proposed in this pull request?

This PR proposes to fix the `Dockerfile` for Spark release.

- Port b135db3b1a to `Dockerfile`
- Upgrade Ubuntu 18.04 -> 20.04 (because of porting b135db3)
- Remove Python 2 (because of Ubuntu upgrade)
- Use built-in Python 3.8.5 (because of Ubuntu upgrade)
- Node.js 11 -> 12 (because of Ubuntu upgrade)
- Ruby 2.5 -> 2.7 (because of Ubuntu upgrade)
- Python dependencies and Jekyll + plugins upgrade to the latest as it's used in GitHub Actions build (unrelated to the issue itself)

### Why are the changes needed?

To make a Spark release :-).

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

Manually tested via:

```bash
cd dev/create-release/spark-rm
docker build -t spark-rm --build-arg UID=$UID .
```

```
...
Successfully built 516d7943634f
Successfully tagged spark-rm:latest
```

Closes #30971 from HyukjinKwon/SPARK-33927.

Lead-authored-by: Hyukjin Kwon <gurwls223@apache.org>
Co-authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-30 16:37:23 +09:00
Dongjoon Hyun 00642ee19e
[SPARK-33843][BUILD] Upgrade to Zstd 1.4.8
### What changes were proposed in this pull request?

This PR aims to upgrade Zstd library to 1.4.8.

### Why are the changes needed?

This will bring Zstd 1.4.7 and 1.4.8 improvement and bug fixes and the following from `zstd-jni`.
- https://github.com/facebook/zstd/releases/tag/v1.4.7
- https://github.com/facebook/zstd/releases/tag/v1.4.8
- https://github.com/luben/zstd-jni/issues/153 (Apple M1 architecture)

### Does this PR introduce _any_ user-facing change?

This will unblock Apple Silicon usage.

### How was this patch tested?

Pass the CIs.

Closes #30848 from dongjoon-hyun/SPARK-33843.

Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-12-19 06:59:44 -08:00
HyukjinKwon ddda32b156 [SPARK-33802][INFRA][FOLLOW-UP] Separate arguments properly for -c option in git command for PySpark coverage
### What changes were proposed in this pull request?

This PR proposes to separate arguments properly for `-c` options. Otherwise, the space is considered as its part of argument:

```
Cloning into 'pyspark-coverage-site'...
unknown option: -c user.name='Apache Spark Test Account'
usage: git [--version] [--help] [-C <path>] [-c <name>=<value>]
           [--exec-path[=<path>]] [--html-path] [--man-path] [--info-path]
           [-p | --paginate | -P | --no-pager] [--no-replace-objects] [--bare]
           [--git-dir=<path>] [--work-tree=<path>] [--namespace=<name>]
           <command> [<args>]
[error] running git -c user.name='Apache Spark Test Account' -c user.email='sparktestaccgmail.com' commit -am Coverage report at latest commit in Apache Spark ; received return code 129
```

### Why are the changes needed?

To make the build pass (https://amplab.cs.berkeley.edu/jenkins/job/spark-master-test-sbt-hadoop-3.2/1728/console).

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

```python
>>> from sparktestsupport.shellutils import run_cmd
>>> run_cmd([
...             "git",
...             "-c",
...             "user.name='Apache Spark Test Account'",
...             "-c",
...             "user.email='sparktestaccgmail.com'",
...             "commit",
...             "-am",
...             "Coverage report at latest commit in Apache Spark"])
[SPARK-33802-followup 80d2565a511] Coverage report at latest commit in Apache Spark
 1 file changed, 1 insertion(+), 1 deletion(-)
CompletedProcess(args=['git', '-c', "user.name='Apache Spark Test Account'", '-c', "user.email='sparktestaccgmail.com'", 'commit', '-am', 'Coverage report at latest commit in Apache Spark'], returncode=0)
```

I cannot run e2e test because it requires the env to have Jenkins secret.

Closes #30804 from HyukjinKwon/SPARK-33802-followup.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-16 23:42:34 +09:00
HyukjinKwon 888a274a88 [SPARK-33802][INFRA] Override name and email address explicitly when updating PySpark coverage
### What changes were proposed in this pull request?

The current Jenkins job fails as below (https://amplab.cs.berkeley.edu/jenkins/job/spark-master-test-sbt-hadoop-3.2/1726/console)

```
Generating HTML files for PySpark coverage under /home/jenkins/workspace/spark-master-test-sbt-hadoop-3.2/python/test_coverage/htmlcov
/home/jenkins/workspace/spark-master-test-sbt-hadoop-3.2
Cloning into 'pyspark-coverage-site'...

*** Please tell me who you are.

Run

  git config --global user.email "youexample.com"
  git config --global user.name "Your Name"

to set your account's default identity.
Omit --global to set the identity only in this repository.
```

This PR proposes to set both when committing to the coverage site.

### Why are the changes needed?

To make the coverage site keep working.

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

Manually tested in the console but it has to be merged to test in the Jenkins environment.

Closes #30796 from HyukjinKwon/SPARK-33802.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-16 17:20:03 +09:00
Kent Yao 4d47ac4b4b [SPARK-33705][SQL][TEST] Fix HiveThriftHttpServerSuite flakiness
### What changes were proposed in this pull request?
TO FIX flaky tests:

https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/132345/testReport/
```
org.apache.spark.sql.hive.thriftserver.HiveThriftHttpServerSuite.JDBC query execution
org.apache.spark.sql.hive.thriftserver.HiveThriftHttpServerSuite.Checks Hive version
org.apache.spark.sql.hive.thriftserver.HiveThriftHttpServerSuite.SPARK-24829 Checks cast as float
```

The root cause here is a jar conflict issue.
`NewCookie.isHttpOnly` is not defined in the `jsr311-api.jar` which conflicts
The transitive artifact `jsr311-api.jar` of `hadoop-client` is excluded at the maven side. See https://issues.apache.org/jira/browse/SPARK-27179.

The Jenkins PR builder and Github Action use `SBT` as the compiler tool.

First, the exclusion rule from maven is not followed by sbt, so I was able to see `jsr311-api.jar` from maven cache to be added to the classpath directly. **This seems to be a  bug of `sbt-pom-reader` plugin but I'm not that sure.**

Then I added an `ExcludeRule` for the `hive-thriftserver` module at the SBT side and did see the `jsr311-api.jar` gone, but the CI jobs still failed with the same error.

I added a trace log in ThriftHttpServlet

```s
ERROR ThriftHttpServlet: !!!!!!!!! Suspect???????? --->
file:/home/jenkins/workspace/SparkPullRequestBuilder/assembly/target/scala-2.12/jars/jsr311-api-1.1.1.jar
```
And the log pointed out that the assembly phase copied it to `assembly/target/scala-2.12/jars/` which will be added to the classpath too. With the help of SBT `dependencyTree` tool, I saw the `jsr311-api` again as a transitive of `jersery-core` from `yarn` module with a `test` scope. So **This seems to be another bug from the SBT side of the `sbt-assembly` plugin.**  It copied a test scope transitive artifact to the assembly output.

In this PR, I defined some rules in SparkBuild.scala to bypass the potential bugs from the SBT side.

First, exclude the `jsr311` from all over the project and then add it back separately to the YARN module for SBT.

Additionally, the HiveThriftServerSuites was reflected for reducing flakiness too, but not related to the bugs I have found so far.

### Why are the changes needed?

fix test here

### Does this PR introduce _any_ user-facing change?

NO
### How was this patch tested?

passing jenkins and ga

Closes #30643 from yaooqinn/HiveThriftHttpServerSuite.

Authored-by: Kent Yao <yaooqinn@hotmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
2020-12-14 05:14:38 +00:00
Yuming Wang 01b73ae638
[SPARK-33766][BUILD] Upgrade Jackson to 2.11.4
### What changes were proposed in this pull request?

This pr upgrade Jackson to 2.11.4.
Jackson Release 2.11: https://github.com/FasterXML/jackson/wiki/Jackson-Release-2.11

### Why are the changes needed?

Make it easy to upgrade dependency because Jackson 2.10 is not compatible with 2.11:
```
com.fasterxml.jackson.databind.JsonMappingException: Scala module 2.10.5 requires Jackson Databind version >= 2.10.0 and < 2.11.0
```
[Avro](https://issues.apache.org/jira/browse/AVRO-2967) has upgraded Jackson to 2.11.3.
[Parquet](https://issues.apache.org/jira/browse/PARQUET-1895) has upgraded Jackson to 2.11.2.

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Existing test.

Closes #30746 from wangyum/SPARK-33766.

Authored-by: Yuming Wang <yumwang@ebay.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-12-13 14:40:55 -08:00
Nicholas Marion 99848e530f
[SPARK-33762][BUILD] Upgrade commons-codec to 1.15
### What changes were proposed in this pull request?

### Why are the changes needed?

Open Source scans are reporting a potential encoding/decoding issue related to versions of commons-codec prior to 1.13. Commit referenced: 48b615756d

### Does this PR introduce _any_ user-facing change?

No.

### How was this patch tested?

Existing tests.

Closes #30740 from n-marion/SPARK-33762_upgrade-commons-codec.

Authored-by: Nicholas Marion <nmarion@us.ibm.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
2020-12-13 14:36:54 -08:00
HyukjinKwon cd7a30641f [SPARK-33749][BUILD][PYTHON] Exclude target directory in pycodestyle and flake8
### What changes were proposed in this pull request?

Once you build and ran K8S tests, Python lint fails as below:

```bash
$ ./dev/lint-python
```

Before this PR:

```
starting python compilation test...
python compilation succeeded.

downloading pycodestyle from https://raw.githubusercontent.com/PyCQA/pycodestyle/2.6.0/pycodestyle.py...
starting pycodestyle test...
pycodestyle checks failed:
./resource-managers/kubernetes/integration-tests/target/spark-dist-unpacked/python/pyspark/cloudpickle/cloudpickle.py:15:101: E501 line too long (105 > 100 characters)
./resource-managers/kubernetes/integration-tests/target/spark-dist-unpacked/python/docs/source/conf.py:60:101: E501 line too long (124 > 100 characters)
...
```

After this PR:

```
starting python compilation test...
python compilation succeeded.

downloading pycodestyle from https://raw.githubusercontent.com/PyCQA/pycodestyle/2.6.0/pycodestyle.py...
starting pycodestyle test...
pycodestyle checks passed.

starting flake8 test...
flake8 checks passed.

starting mypy test...
mypy checks passed.

starting sphinx-build tests...
sphinx-build checks passed.
```

This PR excludes target directory to avoid such cases in the future.

### Why are the changes needed?

To make it easier to run linters

### Does this PR introduce _any_ user-facing change?

No, dev-only.

### How was this patch tested?

Manually tested va running `./dev/lint-python`.

Closes #30718 from HyukjinKwon/SPARK-33749.

Authored-by: HyukjinKwon <gurwls223@apache.org>
Signed-off-by: HyukjinKwon <gurwls223@apache.org>
2020-12-11 14:15:56 +09:00