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15494 commits

Author SHA1 Message Date
Holden Karau 457e58befe [SPARK-14424][BUILD][DOCS] Update the build docs to switch from assembly to package and add a no…
## What changes were proposed in this pull request?

Change our build docs & shell scripts to that developers are aware of the change from "assembly" to "package"

## How was this patch tested?

Manually ran ./bin/spark-shell after ./build/sbt assembly and verified error message printed, ran new suggested build target and verified ./bin/spark-shell runs after this.

Author: Holden Karau <holden@pigscanfly.ca>
Author: Holden Karau <holden@us.ibm.com>

Closes #12197 from holdenk/SPARK-1424-spark-class-broken-fix-build-docs.
2016-04-06 16:00:29 -07:00
Tathagata Das 9af5423ec2 [SPARK-12133][STREAMING] Streaming dynamic allocation
## What changes were proposed in this pull request?

Added a new Executor Allocation Manager for the Streaming scheduler for doing Streaming Dynamic Allocation.

## How was this patch tested
Unit tests, and cluster tests.

Author: Tathagata Das <tathagata.das1565@gmail.com>

Closes #12154 from tdas/streaming-dynamic-allocation.
2016-04-06 15:46:20 -07:00
Marcelo Vanzin de4792605a [SPARK-14391][LAUNCHER] Increase test timeouts.
Most of the time tests should still pass really quickly; it's just
when machines are overloaded that the tests may take a little time,
but that's still preferable over just failing the test.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #12210 from vanzin/SPARK-14391.
2016-04-06 15:45:03 -07:00
Davies Liu 5a4b11a901 [SPARK-14224] [SPARK-14223] [SPARK-14310] [SQL] fix RowEncoder and parquet reader for wide table
## What changes were proposed in this pull request?

1) fix the RowEncoder for wide table (many columns) by splitting the generate code into multiple functions.
2) Separate DataSourceScan as RowDataSourceScan and BatchedDataSourceScan
3) Disable the returning columnar batch in parquet reader if there are many columns.
4) Added a internal config for maximum number of fields (nested) columns supported by whole stage codegen.

Closes #12098

## How was this patch tested?

Add a tests for table with 1000 columns.

Author: Davies Liu <davies@databricks.com>

Closes #12047 from davies/many_columns.
2016-04-06 15:33:39 -07:00
Shixiong Zhu a4ead6d388 [SPARK-14382][SQL] QueryProgress should be post after committedOffsets is updated
## What changes were proposed in this pull request?

Make sure QueryProgress is post after committedOffsets is updated. If QueryProgress is post before committedOffsets is updated, the listener may see a wrong sinkStatus (created from committedOffsets).

See https://amplab.cs.berkeley.edu/jenkins/job/spark-master-test-maven-hadoop-2.2/644/testReport/junit/org.apache.spark.sql.util/ContinuousQueryListenerSuite/single_listener/ for an example of the failure.

## How was this patch tested?

Existing unit tests.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #12155 from zsxwing/SPARK-14382.
2016-04-06 12:28:04 -07:00
Bryan Cutler 9c6556c5f8 [SPARK-13430][PYSPARK][ML] Python API for training summaries of linear and logistic regression
## What changes were proposed in this pull request?

Adding Python API for training summaries of LogisticRegression and LinearRegression in PySpark ML.

## How was this patch tested?
Added unit tests to exercise the api calls for the summary classes.  Also, manually verified values are expected and match those from Scala directly.

Author: Bryan Cutler <cutlerb@gmail.com>

Closes #11621 from BryanCutler/pyspark-ml-summary-SPARK-13430.
2016-04-06 12:07:47 -07:00
Sameer Agarwal bb1fa5b218 [SPARK-14320][SQL] Make ColumnarBatch.Row mutable
## What changes were proposed in this pull request?

In order to leverage a data structure like `AggregateHashMap` (https://github.com/apache/spark/pull/12055) to speed up aggregates with keys, we need to make `ColumnarBatch.Row` mutable.

## How was this patch tested?

Unit test in `ColumnarBatchSuite`. Also, tested via `BenchmarkWholeStageCodegen`.

Author: Sameer Agarwal <sameer@databricks.com>

Closes #12103 from sameeragarwal/mutable-row.
2016-04-06 11:59:42 -07:00
Zheng RuiFeng af73d97378 [SPARK-13538][ML] Add GaussianMixture to ML
JIRA: https://issues.apache.org/jira/browse/SPARK-13538

## What changes were proposed in this pull request?

Add GaussianMixture and GaussianMixtureModel to ML package

## How was this patch tested?

unit tests and manual tests were done.
Local Scalastyle checks passed.

Author: Zheng RuiFeng <ruifengz@foxmail.com>
Author: Ruifeng Zheng <ruifengz@foxmail.com>
Author: Joseph K. Bradley <joseph@databricks.com>

Closes #11419 from zhengruifeng/mlgmm.
2016-04-06 11:45:16 -07:00
Yuhao Yang 8cffcb60de [SPARK-14322][MLLIB] Use treeAggregate instead of reduce in OnlineLDAOptimizer
## What changes were proposed in this pull request?
jira: https://issues.apache.org/jira/browse/SPARK-14322

OnlineLDAOptimizer uses RDD.reduce in two places where it could use treeAggregate. This can cause scalability issues. This should be an easy fix.
This is also a bug since it modifies the first argument to reduce, so we should use aggregate or treeAggregate.
See this line: f12f11e578/mllib/src/main/scala/org/apache/spark/mllib/clustering/LDAOptimizer.scala (L452)
and a few lines below it.

## How was this patch tested?
unit tests

Author: Yuhao Yang <hhbyyh@gmail.com>

Closes #12106 from hhbyyh/ldaTreeReduce.
2016-04-06 11:36:26 -07:00
Xusen Yin db0b06c6ea [SPARK-13786][ML][PYSPARK] Add save/load for pyspark.ml.tuning
## What changes were proposed in this pull request?

https://issues.apache.org/jira/browse/SPARK-13786

Add save/load for Python CrossValidator/Model and TrainValidationSplit/Model.

## How was this patch tested?

Test with Python doctest.

Author: Xusen Yin <yinxusen@gmail.com>

Closes #12020 from yinxusen/SPARK-13786.
2016-04-06 11:24:11 -07:00
bomeng 3c8d882165 [SPARK-14383][SQL] missing "|" in the g4 file
## What changes were proposed in this pull request?

A very trivial one. It missed "|" between DISTRIBUTE and UNSET.

## How was this patch tested?

I do not think it is really needed.

Author: bomeng <bmeng@us.ibm.com>

Closes #12156 from bomeng/SPARK-14383.
2016-04-06 11:12:48 -07:00
bomeng 5abd02c02b [SPARK-14429][SQL] Improve LIKE pattern in "SHOW TABLES / FUNCTIONS LIKE <pattern>" DDL
LIKE <pattern> is commonly used in SHOW TABLES / FUNCTIONS etc DDL. In the pattern, user can use `|` or `*` as wildcards.

1. Currently, we used `replaceAll()` to replace `*` with `.*`, but the replacement was scattered in several places; I have created an utility method and use it in all the places;

2. Consistency with Hive: the pattern is case insensitive in Hive and white spaces will be trimmed, but current pattern matching does not do that. For example, suppose we have tables (t1, t2, t3), `SHOW TABLES LIKE ' T* ' ` will list all the t-tables. Please use Hive to verify it.

3. Combined with `|`, the result will be sorted. For pattern like `'  B*|a*  '`, it will list the result in a-b order.

I've made some changes to the utility method to make sure we will get the same result as Hive does.

A new method was created in StringUtil and test cases were added.

andrewor14

Author: bomeng <bmeng@us.ibm.com>

Closes #12206 from bomeng/SPARK-14429.
2016-04-06 11:06:14 -07:00
Kousuke Saruta 10494feae0 [SPARK-14426][SQL] Merge PerserUtils and ParseUtils
## What changes were proposed in this pull request?

We have ParserUtils and ParseUtils which are both utility collections for use during the parsing process.
Those names and what they are used for is very similar so I think we can merge them.

Also, the original unescapeSQLString method may have a fault. When "\u0061" style character literals are passed to the method, it's not unescaped successfully.
This patch fix the bug.

## How was this patch tested?

Added a new test case.

Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #12199 from sarutak/merge-ParseUtils-and-ParserUtils.
2016-04-06 10:57:46 -07:00
Davies Liu 90ca184486 [SPARK-14418][PYSPARK] fix unpersist of Broadcast in Python
## What changes were proposed in this pull request?

Currently, Broaccast.unpersist() will remove the file of broadcast, which should be the behavior of destroy().

This PR added destroy() for Broadcast in Python, to match the sematics in Scala.

## How was this patch tested?

Added regression tests.

Author: Davies Liu <davies@databricks.com>

Closes #12189 from davies/py_unpersist.
2016-04-06 10:46:34 -07:00
Michael Armbrust 59236e5c5b [SPARK-14288][SQL] Memory Sink for streaming
This PR exposes the internal testing `MemorySink` though the data source API.  This will allow users to easily test streaming applications in the Spark shell or other local tests.

Usage:
```scala
inputStream.write
  .format("memory")
  .queryName("memStream")
  .startStream()

// Now you can query the result of the stream here.
sqlContext.table("memStream")
```

The most complicated part of the logic is choosing the checkpoint directory.  There are a few requirements we are attempting to satisfy here:
 - when working in the shell locally, it should just work with no extra configuration.
 - when working on a cluster you should be able to make it easily create the checkpoint on a distributed file system so you can test aggregation (state checkpoints are also stored in this directory and must be accessible from workers).
 - it should be clear that you can't resume since the data is just in memory.

The chosen algorithm proceeds as follows:
 - the user gives a checkpoint directory, use it
 - if the conf has a checkpoint location, use `$location/$queryName`
 - if neither, create a local directory
 - always check to make sure there are no offsets written to the directory

Author: Michael Armbrust <michael@databricks.com>

Closes #12119 from marmbrus/memorySink.
2016-04-06 10:05:02 -07:00
Prajwal Tuladhar 5e64dab868 [SPARK-14430][BUILD] use https while downloading binaries from build/mvn
## What changes were proposed in this pull request?

`./build/mvn` file was downloading binaries in non HTTPS mode. This PR tends to fix it.

## How was this patch tested?

By running `./build/mvn clean package` locally

Author: Prajwal Tuladhar <praj@infynyxx.com>

Closes #12182 from infynyxx/mvn_use_https.
2016-04-06 15:28:52 +01:00
Victor Chima 24015199f4 Added omitted word in error message
## What changes were proposed in this pull request?

Added an omitted word in the error message displayed by the Graphx Pregel API when `maxIterations <= 0`

## How was this patch tested?

Manual test

Author: Victor Chima <blazy2k9@gmail.com>

Closes #12205 from blazy2k9/hotfix/pregel-error-message.
2016-04-06 15:27:46 +01:00
gatorsmile 25a4c8e0c5 [SPARK-14396][BUILD][HOT] Fix compilation against Scala 2.10
#### What changes were proposed in this pull request?
This PR is to fix the compilation errors in Scala 2.10 build, as shown in the link:
https://amplab.cs.berkeley.edu/jenkins/job/spark-master-compile-maven-scala-2.10/735/console
```
[error] /home/jenkins/workspace/spark-master-compile-maven-scala-2.10/sql/hive/src/test/scala/org/apache/spark/sql/hive/HiveDDLCommandSuite.scala:266: value contains is not a member of Option[String]
[error]     assert(desc.viewText.contains("SELECT * FROM tab1"))
[error]                          ^
[error] /home/jenkins/workspace/spark-master-compile-maven-scala-2.10/sql/hive/src/test/scala/org/apache/spark/sql/hive/HiveDDLCommandSuite.scala:267: value contains is not a member of Option[String]
[error]     assert(desc.viewOriginalText.contains("SELECT * FROM tab1"))
[error]                                  ^
[error] /home/jenkins/workspace/spark-master-compile-maven-scala-2.10/sql/hive/src/test/scala/org/apache/spark/sql/hive/HiveDDLCommandSuite.scala:293: value contains is not a member of Option[String]
[error]     assert(desc.viewText.contains("SELECT * FROM tab1"))
[error]                          ^
[error] /home/jenkins/workspace/spark-master-compile-maven-scala-2.10/sql/hive/src/test/scala/org/apache/spark/sql/hive/HiveDDLCommandSuite.scala:294: value contains is not a member of Option[String]
[error]     assert(desc.viewOriginalText.contains("SELECT * FROM tab1"))
[error]                                  ^
[error] four errors found
[error] Compile failed at Apr 5, 2016 10:59:09 PM [10.502s]
```

#### How was this patch tested?
Not sure how to trigger Scala 2.10 compilation in the test environment.

Author: gatorsmile <gatorsmile@gmail.com>

Closes #12201 from gatorsmile/buildBreak2.10.
2016-04-06 15:48:28 +02:00
Eric Liang 78c1076d04 [SPARK-14252] Executors do not try to download remote cached blocks
## What changes were proposed in this pull request?

As mentioned in the ticket this was because one get path in the refactored `BlockManager` did not check for remote storage.

## How was this patch tested?

Unit test, also verified manually with reproduction in the ticket.

cc JoshRosen

Author: Eric Liang <ekl@databricks.com>

Closes #12193 from ericl/spark-14252.
2016-04-05 22:37:51 -07:00
gatorsmile 68be5b9e8a [SPARK-14396][SQL] Throw Exceptions for DDLs of Partitioned Views
#### What changes were proposed in this pull request?

Because the concept of partitioning is associated with physical tables, we disable all the supports of partitioned views, which are defined in the following three commands in [Hive DDL Manual](https://cwiki.apache.org/confluence/display/Hive/LanguageManual+DDL#LanguageManualDDL-Create/Drop/AlterView):
```
ALTER VIEW view DROP [IF EXISTS] PARTITION spec1[, PARTITION spec2, ...];

ALTER VIEW view ADD [IF NOT EXISTS] PARTITION spec;

CREATE VIEW [IF NOT EXISTS] [db_name.]view_name [(column_name [COMMENT column_comment], ...) ]
  [COMMENT view_comment]
  [TBLPROPERTIES (property_name = property_value, ...)]
  AS SELECT ...;
```

An exception is thrown when users issue any of these three DDL commands.

#### How was this patch tested?
Added test cases for parsing create view and changed the existing test cases to verify if the exceptions are thrown.

Author: gatorsmile <gatorsmile@gmail.com>
Author: xiaoli <lixiao1983@gmail.com>
Author: Xiao Li <xiaoli@Xiaos-MacBook-Pro.local>

Closes #12169 from gatorsmile/viewPartition.
2016-04-05 22:33:44 -07:00
Shixiong Zhu 48467f4eb0 [SPARK-14416][CORE] Add thread-safe comments for CoarseGrainedSchedulerBackend's fields
## What changes were proposed in this pull request?

While I was reviewing #12078, I found most of CoarseGrainedSchedulerBackend's mutable fields doesn't have any comments about the thread-safe assumptions and it's hard for people to figure out which part of codes should be protected by the lock. This PR just added comments/annotations for them and also added strict access modifiers for some fields.

## How was this patch tested?

Existing unit tests.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #12188 from zsxwing/comments.
2016-04-05 22:32:37 -07:00
Andrew Or adbfdb878d [SPARK-14128][SQL] Alter table DDL followup
## What changes were proposed in this pull request?

This is just a followup to #12121, which implemented the alter table DDLs using the `SessionCatalog`. Specially, this corrects the behavior of setting the location of a datasource table. For datasource tables, we need to set the `locationUri` in addition to the `path` entry in the serde properties. Additionally, changing the location of a datasource table partition is not allowed.

## How was this patch tested?

`DDLSuite`

Author: Andrew Or <andrew@databricks.com>

Closes #12186 from andrewor14/alter-table-ddl-followup.
2016-04-05 21:23:20 -07:00
Wenchen Fan f6456fa80b [SPARK-14296][SQL] whole stage codegen support for Dataset.map
## What changes were proposed in this pull request?

This PR adds a new operator `MapElements` for `Dataset.map`, it's a 1-1 mapping and is easier to adapt to whole stage codegen framework.

## How was this patch tested?

new test in `WholeStageCodegenSuite`

Author: Wenchen Fan <wenchen@databricks.com>

Closes #12087 from cloud-fan/map.
2016-04-06 12:09:10 +08:00
Sean Owen 8e5c1cbf2c [SPARK-13211][STREAMING] StreamingContext throws NoSuchElementException when created from non-existent checkpoint directory
## What changes were proposed in this pull request?

Take 2: avoid None.get NoSuchElementException in favor of more descriptive IllegalArgumentException if a non-existent checkpoint dir is used without a SparkContext

## How was this patch tested?

Jenkins test plus new test for this particular case

Author: Sean Owen <sowen@cloudera.com>

Closes #12174 from srowen/SPARK-13211.
2016-04-05 19:57:23 -07:00
Eric Liang 7d29c72f64 [SPARK-14359] Unit tests for java 8 lambda syntax with typed aggregates
## What changes were proposed in this pull request?

Adds unit tests for java 8 lambda syntax with typed aggregates as a follow-up to #12168

## How was this patch tested?

Unit tests.

Author: Eric Liang <ekl@databricks.com>

Closes #12181 from ericl/sc-2794-2.
2016-04-05 21:22:20 -05:00
Burak Yavuz 1146c534d6 [SPARK-14353] Dataset Time Window window API for R
## What changes were proposed in this pull request?

The `window` function was added to Dataset with [this PR](https://github.com/apache/spark/pull/12008).
This PR adds the R API for this function.

With this PR, SQL, Java, and Scala will share the same APIs as in users can use:
 - `window(timeColumn, windowDuration)`
 - `window(timeColumn, windowDuration, slideDuration)`
 - `window(timeColumn, windowDuration, slideDuration, startTime)`

In Python and R, users can access all APIs above, but in addition they can do
 - In R:
   `window(timeColumn, windowDuration, startTime=...)`

that is, they can provide the startTime without providing the `slideDuration`. In this case, we will generate tumbling windows.

## How was this patch tested?

Unit tests + manual tests

Author: Burak Yavuz <brkyvz@gmail.com>

Closes #12141 from brkyvz/R-windows.
2016-04-05 17:21:41 -07:00
Dongjoon Hyun 48682f6bf6 [HOTFIX] Fix optional to createOptional.
## What changes were proposed in this pull request?

This PR fixes the following line.
```
   private[spark] val STAGING_DIR = ConfigBuilder("spark.yarn.stagingDir")
     .doc("Staging directory used while submitting applications.")
     .stringConf
-    .optional
+    .createOptional
```

## How was this patch tested?

Pass the build.

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #12187 from dongjoon-hyun/hotfix.
2016-04-05 18:10:40 -05:00
Marcelo Vanzin d5ee9d5c24 [SPARK-529][SQL] Modify SQLConf to use new config API from core.
Because SQL keeps track of all known configs, some customization was
needed in SQLConf to allow that, since the core API does not have that
feature.

Tested via existing (and slightly updated) unit tests.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #11570 from vanzin/SPARK-529-sql.
2016-04-05 15:19:51 -07:00
Shixiong Zhu 7329fe272d [SPARK-14411][SQL] Add a note to warn that onQueryProgress is asynchronous
## What changes were proposed in this pull request?

onQueryProgress is asynchronous so the user may see some future status of `ContinuousQuery`. This PR just updated comments to warn it.

## How was this patch tested?

Only updated comments.

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #12180 from zsxwing/ContinuousQueryListener-doc.
2016-04-05 15:18:35 -07:00
Andrew Or 45d8cdee39 [SPARK-14129][SPARK-14128][SQL] Alter table DDL commands
## What changes were proposed in this pull request?

In Spark 2.0, we want to handle the most common `ALTER TABLE` commands ourselves instead of passing the entire query text to Hive. This is done using the new `SessionCatalog` API introduced recently.

The commands supported in this patch include:
```
ALTER TABLE ... RENAME TO ...
ALTER TABLE ... SET TBLPROPERTIES ...
ALTER TABLE ... UNSET TBLPROPERTIES ...
ALTER TABLE ... SET LOCATION ...
ALTER TABLE ... SET SERDE ...
```
The commands we explicitly do not support are:
```
ALTER TABLE ... CLUSTERED BY ...
ALTER TABLE ... SKEWED BY ...
ALTER TABLE ... NOT CLUSTERED
ALTER TABLE ... NOT SORTED
ALTER TABLE ... NOT SKEWED
ALTER TABLE ... NOT STORED AS DIRECTORIES
```
For these we throw exceptions complaining that they are not supported.

## How was this patch tested?

`DDLSuite`

Author: Andrew Or <andrew@databricks.com>

Closes #12121 from andrewor14/alter-table-ddl.
2016-04-05 14:54:07 -07:00
Dongjoon Hyun c59abad052 [SPARK-14402][SQL] initcap UDF doesn't match Hive/Oracle behavior in lowercasing rest of string
## What changes were proposed in this pull request?

Current, SparkSQL `initCap` is using `toTitleCase` function. However, `UTF8String.toTitleCase` implementation changes only the first letter and just copy the other letters: e.g. sParK --> SParK. This is the correct implementation `toTitleCase`.
```
hive> select initcap('sParK');
Spark
```
```
scala> sql("select initcap('sParK')").head
res0: org.apache.spark.sql.Row = [SParK]
```

This PR updates the implementation of `initcap` using `toLowerCase` and `toTitleCase`.

## How was this patch tested?

Pass the Jenkins tests (including new testcase).

Author: Dongjoon Hyun <dongjoon@apache.org>

Closes #12175 from dongjoon-hyun/SPARK-14402.
2016-04-05 13:31:00 -07:00
Burak Yavuz 9ee5c25717 [SPARK-14353] Dataset Time Window window API for Python, and SQL
## What changes were proposed in this pull request?

The `window` function was added to Dataset with [this PR](https://github.com/apache/spark/pull/12008).
This PR adds the Python, and SQL, API for this function.

With this PR, SQL, Java, and Scala will share the same APIs as in users can use:
 - `window(timeColumn, windowDuration)`
 - `window(timeColumn, windowDuration, slideDuration)`
 - `window(timeColumn, windowDuration, slideDuration, startTime)`

In Python, users can access all APIs above, but in addition they can do
 - In Python:
   `window(timeColumn, windowDuration, startTime=...)`

that is, they can provide the startTime without providing the `slideDuration`. In this case, we will generate tumbling windows.

## How was this patch tested?

Unit tests + manual tests

Author: Burak Yavuz <brkyvz@gmail.com>

Closes #12136 from brkyvz/python-windows.
2016-04-05 13:18:39 -07:00
Yin Huai 72544d6f2a [SPARK-14123][SPARK-14384][SQL] Handle CreateFunction/DropFunction
## What changes were proposed in this pull request?
This PR implements CreateFunction and DropFunction commands. Besides implementing these two commands, we also change how to manage functions. Here are the main changes.
* `FunctionRegistry` will be a container to store all functions builders and it will not actively load any functions. Because of this change, we do not need to maintain a separate registry for HiveContext. So, `HiveFunctionRegistry` is deleted.
* SessionCatalog takes care the job of loading a function if this function is not in the `FunctionRegistry` but its metadata is stored in the external catalog. For this case, SessionCatalog will (1) load the metadata from the external catalog, (2) load all needed resources (i.e. jars and files), (3) create a function builder based on the function definition, (4) register the function builder in the `FunctionRegistry`.
* A `UnresolvedGenerator` is created. So, the parser will not need to call `FunctionRegistry` directly during parsing, which is not a good time to create a Hive UDTF. In the analysis phase, we will resolve `UnresolvedGenerator`.

This PR is based on viirya's https://github.com/apache/spark/pull/12036/

## How was this patch tested?
Existing tests and new tests.

## TODOs
[x] Self-review
[x] Cleanup
[x] More tests for create/drop functions (we need to more tests for permanent functions).
[ ] File JIRAs for all TODOs
[x] Standardize the error message when a function does not exist.

Author: Yin Huai <yhuai@databricks.com>
Author: Liang-Chi Hsieh <simonh@tw.ibm.com>

Closes #12117 from yhuai/function.
2016-04-05 12:27:06 -07:00
Devaraj K bc36df127d [SPARK-13063][YARN] Make the SPARK YARN STAGING DIR as configurable
## What changes were proposed in this pull request?
Made the SPARK YARN STAGING DIR as configurable with the configuration as 'spark.yarn.staging-dir'.

## How was this patch tested?

I have verified it manually by running applications on yarn, If the 'spark.yarn.staging-dir' is configured then the value used as staging directory otherwise uses the default value i.e. file system’s home directory for the user.

Author: Devaraj K <devaraj@apache.org>

Closes #12082 from devaraj-kavali/SPARK-13063.
2016-04-05 14:12:00 -05:00
Shixiong Zhu 463bac0011 [SPARK-14257][SQL] Allow multiple continuous queries to be started from the same DataFrame
## What changes were proposed in this pull request?

Make StreamingRelation store the closure to create the source in StreamExecution so that we can start multiple continuous queries from the same DataFrame.

## How was this patch tested?

`test("DataFrame reuse")`

Author: Shixiong Zhu <shixiong@databricks.com>

Closes #12049 from zsxwing/df-reuse.
2016-04-05 11:12:05 -07:00
Wenchen Fan f77f11c671 [SPARK-14345][SQL] Decouple deserializer expression resolution from ObjectOperator
## What changes were proposed in this pull request?

This PR decouples deserializer expression resolution from `ObjectOperator`, so that we can use deserializer expression in normal operators. This is needed by #12061 and #12067 , I abstracted the logic out and put them in this PR to reduce code change in the future.

## How was this patch tested?

existing tests.

Author: Wenchen Fan <wenchen@databricks.com>

Closes #12131 from cloud-fan/separate.
2016-04-05 10:53:54 -07:00
Kousuke Saruta e4bd504120 [SPARK-14397][WEBUI] <html> and <body> tags are nested in LogPage
## What changes were proposed in this pull request?

In `LogPage`, the content to be rendered is defined as follows.

```
    val content =
      <html>
        <body>
          {linkToMaster}
          <div>
            <div style="float:left; margin-right:10px">{backButton}</div>
            <div style="float:left;">{range}</div>
            <div style="float:right; margin-left:10px">{nextButton}</div>
          </div>
          <br />
          <div style="height:500px; overflow:auto; padding:5px;">
            <pre>{logText}</pre>
          </div>
        </body>
      </html>
    UIUtils.basicSparkPage(content, logType + " log page for " + pageName)
```

As you can see, <html> and <body> tags will be rendered.

On the other hand, `UIUtils.basicSparkPage` will render those tags so those tags will be nested.

```
  def basicSparkPage(
      content: => Seq[Node],
      title: String,
      useDataTables: Boolean = false): Seq[Node] = {
    <html>
      <head>
        {commonHeaderNodes}
        {if (useDataTables) dataTablesHeaderNodes else Seq.empty}
        <title>{title}</title>
      </head>
      <body>
        <div class="container-fluid">
          <div class="row-fluid">
            <div class="span12">
              <h3 style="vertical-align: middle; display: inline-block;">
                <a style="text-decoration: none" href={prependBaseUri("/")}>
                  <img src={prependBaseUri("/static/spark-logo-77x50px-hd.png")} />
                  <span class="version"
                        style="margin-right: 15px;">{org.apache.spark.SPARK_VERSION}</span>
                </a>
                {title}
              </h3>
            </div>
          </div>
          {content}
        </div>
      </body>
    </html>
  }
```

These are the screen shots before this patch is applied.

![before1](https://cloud.githubusercontent.com/assets/4736016/14273236/03cbed8a-fb44-11e5-8786-bc1bfa4d3f8c.png)
![before2](https://cloud.githubusercontent.com/assets/4736016/14273237/03d1741c-fb44-11e5-9dee-ea93022033a6.png)

And these are the ones after this patch is applied.

![after1](https://cloud.githubusercontent.com/assets/4736016/14273248/1b6a7d8a-fb44-11e5-8a3b-69964f3434f6.png)
![after2](https://cloud.githubusercontent.com/assets/4736016/14273249/1b6b9c38-fb44-11e5-9d6f-281d64c842e4.png)

The appearance is not changed but the html source code is changed.

## How was this patch tested?

Manually run some jobs on my standalone-cluster and check the WebUI.

Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #12170 from sarutak/SPARK-14397.
2016-04-05 10:51:23 -07:00
Shally Sangal d356901588 [SPARK-14284][ML] KMeansSummary deprecating size; adding clusterSizes
## What changes were proposed in this pull request?

KMeansSummary class : deprecated size and added clusterSizes

Author: Shally Sangal <shallysangal@gmail.com>

Closes #12084 from shallys/master.
2016-04-05 10:41:59 -07:00
gatorsmile 7807173679 [SPARK-14349][SQL] Issue Error Messages for Unsupported Operators/DML/DDL in SQL Context.
#### What changes were proposed in this pull request?

Currently, the weird error messages are issued if we use Hive Context-only operations in SQL Context.

For example,
- When calling `Drop Table` in SQL Context, we got the following message:
```
Expected exception org.apache.spark.sql.catalyst.parser.ParseException to be thrown, but java.lang.ClassCastException was thrown.
```

- When calling `Script Transform` in SQL Context, we got the message:
```
assertion failed: No plan for ScriptTransformation [key#9,value#10], cat, [tKey#155,tValue#156], null
+- LogicalRDD [key#9,value#10], MapPartitionsRDD[3] at beforeAll at BeforeAndAfterAll.scala:187
```

Updates:
Based on the investigation from hvanhovell , the root cause is `visitChildren`, which is the default implementation. It always returns the result of the last defined context child. After merging the code changes from hvanhovell , it works! Thank you hvanhovell !

#### How was this patch tested?
A few test cases are added.

Not sure if the same issue exist for the other operators/DDL/DML. hvanhovell

Author: gatorsmile <gatorsmile@gmail.com>
Author: xiaoli <lixiao1983@gmail.com>
Author: Herman van Hovell <hvanhovell@questtec.nl>
Author: Xiao Li <xiaoli@Xiaos-MacBook-Pro.local>

Closes #12134 from gatorsmile/hiveParserCommand.
2016-04-05 11:19:46 +02:00
Dilip Biswal 2715bc68bd [SPARK-14348][SQL] Support native execution of SHOW TBLPROPERTIES command
## What changes were proposed in this pull request?

This PR adds Native execution of SHOW TBLPROPERTIES command.

Command Syntax:
``` SQL
SHOW TBLPROPERTIES table_name[(property_key_literal)]
```
## How was this patch tested?

Tests added in HiveComandSuiie and DDLCommandSuite

Author: Dilip Biswal <dbiswal@us.ibm.com>

Closes #12133 from dilipbiswal/dkb_show_tblproperties.
2016-04-05 08:41:59 +02:00
Eric Liang 064623014e [SPARK-14359] Create built-in functions for typed aggregates in Java
## What changes were proposed in this pull request?

This adds the corresponding Java static functions for built-in typed aggregates already exposed in Scala.

## How was this patch tested?

Unit tests.

rxin

Author: Eric Liang <ekl@databricks.com>

Closes #12168 from ericl/sc-2794.
2016-04-05 00:30:55 -05:00
Yong Tang 7db56244fa [SPARK-14368][PYSPARK] Support python.spark.worker.memory with upper-case unit.
## What changes were proposed in this pull request?

This fix tries to address the issue in PySpark where `spark.python.worker.memory`
could only be configured with a lower case unit (`k`, `m`, `g`, `t`). This fix
allows the upper case unit (`K`, `M`, `G`, `T`) to be used as well. This is to
conform to the JVM memory string as is specified in the documentation .

## How was this patch tested?

This fix adds additional test to cover the changes.

Author: Yong Tang <yong.tang.github@outlook.com>

Closes #12163 from yongtang/SPARK-14368.
2016-04-05 12:19:20 +09:00
Joseph K. Bradley 8f50574ab4 [SPARK-14386][ML] Changed spark.ml ensemble trees methods to return concrete types
## What changes were proposed in this pull request?

In spark.ml, GBT and RandomForest expose the trait DecisionTreeModel in the trees method, but they should not since it is a private trait (and not ready to be made public). It will also be more useful to users if we return the concrete types.

This PR: return concrete types

The MIMA checks appear to be OK with this change.

## How was this patch tested?

Existing unit tests

Author: Joseph K. Bradley <joseph@databricks.com>

Closes #12158 from jkbradley/hide-dtm.
2016-04-04 20:12:09 -07:00
Burak Yavuz ba24d1ee9a [SPARK-14287] isStreaming method for Dataset
With the addition of StreamExecution (ContinuousQuery) to Datasets, data will become unbounded. With unbounded data, the execution of some methods and operations will not make sense, e.g. `Dataset.count()`.

A simple API is required to check whether the data in a Dataset is bounded or unbounded. This will allow users to check whether their Dataset is in streaming mode or not. ML algorithms may check if the data is unbounded and throw an exception for example.

The implementation of this method is simple, however naming it is the challenge. Some possible names for this method are:
 - isStreaming
 - isContinuous
 - isBounded
 - isUnbounded

I've gone with `isStreaming` for now. We can change it before Spark 2.0 if we decide to come up with a different name. For that reason I've marked it as `Experimental`

Author: Burak Yavuz <brkyvz@gmail.com>

Closes #12080 from brkyvz/is-streaming.
2016-04-04 19:04:09 -07:00
Guillaume Poulin 7201f033ce [SPARK-12425][STREAMING] DStream union optimisation
Use PartitionerAwareUnionRDD when possbile for optimizing shuffling and
preserving the partitioner.

Author: Guillaume Poulin <poulin.guillaume@gmail.com>

Closes #10382 from gpoulin/dstream_union_optimisation.
2016-04-05 02:54:38 +01:00
Luciano Resende a172e11cba [SPARK-14366] Remove sbt-idea plugin
## What changes were proposed in this pull request?

Remove sbt-idea plugin as importing sbt project provides much better support.

Author: Luciano Resende <lresende@apache.org>

Closes #12151 from lresende/SPARK-14366.
2016-04-04 16:55:59 -07:00
Marcelo Vanzin 24d7d2e453 [SPARK-13579][BUILD] Stop building the main Spark assembly.
This change modifies the "assembly/" module to just copy needed
dependencies to its build directory, and modifies the packaging
script to pick those up (and remove duplicate jars packages in the
examples module).

I also made some minor adjustments to dependencies to remove some
test jars from the final packaging, and remove jars that conflict with each
other when packaged separately (e.g. servlet api).

Also note that this change restores guava in applications' classpaths, even
though it's still shaded inside Spark. This is now needed for the Hadoop
libraries that are packaged with Spark, which now are not processed by
the shade plugin.

Author: Marcelo Vanzin <vanzin@cloudera.com>

Closes #11796 from vanzin/SPARK-13579.
2016-04-04 16:52:22 -07:00
Davies Liu 400b2f863f [SPARK-14259] [SQL] Merging small files together based on the cost of opening
## What changes were proposed in this pull request?

This PR basically re-do the things in #12068 but with a different model, which should work better in case of small files with different sizes.

## How was this patch tested?

Updated existing tests.

Ran a query on thousands of partitioned small files locally, with all default settings (the cost to open a file should be over estimated), the durations of tasks become smaller and smaller, which is good (the last few tasks will be shortest).

Author: Davies Liu <davies@databricks.com>

Closes #12095 from davies/file_cost.
2016-04-04 14:41:03 -07:00
Davies Liu cc70f17416 [SPARK-14334] [SQL] add toLocalIterator for Dataset/DataFrame
## What changes were proposed in this pull request?

RDD.toLocalIterator() could be used to fetch one partition at a time to reduce the memory usage. Right now, for Dataset/Dataframe we have to use df.rdd.toLocalIterator, which is super slow also requires lots of memory (because of the Java serializer or even Kyro serializer).

This PR introduce an optimized toLocalIterator for Dataset/DataFrame, which is much faster and requires much less memory. For a partition with 5 millions rows, `df.rdd.toIterator` took about 100 seconds, but df.toIterator took less than 7 seconds. For 10 millions row, rdd.toIterator will crash (not enough memory) with 4G heap, but df.toLocalIterator could finished in 12 seconds.

The JDBC server has been updated to use DataFrame.toIterator.

## How was this patch tested?

Existing tests.

Author: Davies Liu <davies@databricks.com>

Closes #12114 from davies/local_iterator.
2016-04-04 13:31:44 -07:00
Reynold Xin 7143904700 [SPARK-14358] Change SparkListener from a trait to an abstract class
## What changes were proposed in this pull request?
Scala traits are difficult to maintain binary compatibility on, and as a result we had to introduce JavaSparkListener. In Spark 2.0 we can change SparkListener from a trait to an abstract class and then remove JavaSparkListener.

## How was this patch tested?
Updated related unit tests.

Author: Reynold Xin <rxin@databricks.com>

Closes #12142 from rxin/SPARK-14358.
2016-04-04 13:26:18 -07:00