## What changes were proposed in this pull request?
1. Remove parameter `isReadPath`. The supported types of read/write should be the same.
2. Disallow reading `NullType` for ORC data source. In #21667 and #21389, it was supposed that ORC supports reading `NullType`, but can't write it. This doesn't make sense. I read docs and did some tests. ORC doesn't support `NullType`.
## How was this patch tested?
Unit tset
Closes#23639 from gengliangwang/supportDataType.
Authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
## What changes were proposed in this pull request?
Spark replaces `CurrentTimestamp` with `CurrentBatchTimestamp`.
However, `CurrentBatchTimestamp` is `TimeZoneAwareExpression` while `CurrentTimestamp` isn't.
Without TimeZoneId, `CurrentBatchTimestamp` becomes unresolved and raises `UnresolvedException`.
Since `CurrentDate` is `TimeZoneAwareExpression`, there is no problem with `CurrentDate`.
This PR reverts the [previous patch](https://github.com/apache/spark/pull/23609) on `MicroBatchExecution` and fixes the root cause.
## How was this patch tested?
Pass the Jenkins with the updated test cases.
Closes#23660 from dongjoon-hyun/SPARK-26379.
Authored-by: Dongjoon Hyun <dongjoon@apache.org>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
## What changes were proposed in this pull request?
Add verification of plan integrity with regards to special expressions being hosted only in supported operators. Specifically:
- `AggregateExpression`: should only be hosted in `Aggregate`, or indirectly in `Window`
- `WindowExpression`: should only be hosted in `Window`
- `Generator`: should only be hosted in `Generate`
This will help us catch errors in future optimizer rules that incorrectly hoist special expression out of their supported operator.
TODO: This PR actually caught a bug in the analyzer in the test case `SPARK-23957 Remove redundant sort from subquery plan(scalar subquery)` in `SubquerySuite`, where a `max()` aggregate function is hosted in a `Sort` operator in the analyzed plan, which is invalid. That test case is disabled in this PR.
SPARK-26741 has been opened to track the fix in the analyzer.
## How was this patch tested?
Added new test case in `OptimizerStructuralIntegrityCheckerSuite`
Closes#23658 from rednaxelafx/plan-integrity.
Authored-by: Kris Mok <kris.mok@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
## What changes were proposed in this pull request?
This PR targets to support Arrow optimization for conversion from R DataFrame to Spark DataFrame.
Like PySpark side, it falls back to non-optimization code path when it's unable to use Arrow optimization.
This can be tested as below:
```bash
$ ./bin/sparkR --conf spark.sql.execution.arrow.enabled=true
```
```r
collect(createDataFrame(mtcars))
```
### Requirements
- R 3.5.x
- Arrow package 0.12+
```bash
Rscript -e 'remotes::install_github("apache/arrowapache-arrow-0.12.0", subdir = "r")'
```
**Note:** currently, Arrow R package is not in CRAN. Please take a look at ARROW-3204.
**Note:** currently, Arrow R package seems not supporting Windows. Please take a look at ARROW-3204.
### Benchmarks
**Shall**
```bash
sync && sudo purge
./bin/sparkR --conf spark.sql.execution.arrow.enabled=false
```
```bash
sync && sudo purge
./bin/sparkR --conf spark.sql.execution.arrow.enabled=true
```
**R code**
```r
createDataFrame(mtcars) # Initializes
rdf <- read.csv("500000.csv")
test <- function() {
options(digits.secs = 6) # milliseconds
start.time <- Sys.time()
createDataFrame(rdf)
end.time <- Sys.time()
time.taken <- end.time - start.time
print(time.taken)
}
test()
```
**Data (350 MB):**
```r
object.size(read.csv("500000.csv"))
350379504 bytes
```
"500000 Records" http://eforexcel.com/wp/downloads-16-sample-csv-files-data-sets-for-testing/
**Results**
```
Time difference of 29.9468 secs
```
```
Time difference of 3.222129 secs
```
The performance improvement was around **950%**.
Actually, this PR improves around **1200%**+ because this PR includes a small optimization about regular R DataFrame -> Spark DatFrame. See https://github.com/apache/spark/pull/22954#discussion_r231847272
### Limitations:
For now, Arrow optimization with R does not support when the data is `raw`, and when user explicitly gives float type in the schema. They produce corrupt values.
In this case, we decide to fall back to non-optimization code path.
## How was this patch tested?
Small test was added.
I manually forced to set this optimization `true` for _all_ R tests and they were _all_ passed (with few of fallback warnings).
**TODOs:**
- [x] Draft codes
- [x] make the tests passed
- [x] make the CRAN check pass
- [x] Performance measurement
- [x] Supportability investigation (for instance types)
- [x] Wait for Arrow 0.12.0 release
- [x] Fix and match it to Arrow 0.12.0
Closes#22954 from HyukjinKwon/r-arrow-createdataframe.
Lead-authored-by: hyukjinkwon <gurwls223@apache.org>
Co-authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
When we read a hive table and create RDDs in `TableReader`, it'll throw exception `java.lang.ClassCastException: org.apache.hadoop.mapreduce.lib.input.TextInputFormat cannot be cast to org.apache.hadoop.mapred.InputFormat` if the input format class of the table is from mapreduce package.
Now we use NewHadoopRDD to deal with the new input format and keep HadoopRDD to the old one.
This PR is from #23506. We can reproduce this issue by executing the new test with the code in old version. When create a table with `org.apache.hadoop.mapreduce.....` input format, we will find the exception thrown in `org.apache.spark.rdd.HadoopRDD.getInputFormat(HadoopRDD.scala:190)`
## How was this patch tested?
Added a new test.
Closes#23559 from Deegue/fix-hadoopRDD.
Lead-authored-by: heguozi <zyzzxycj@gmail.com>
Co-authored-by: Yizhong Zhang <zyzzxycj@163.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
## What changes were proposed in this pull request?
This PR makes hardcoded configs about spark memory and storage to use `ConfigEntry` and put them in the config package.
## How was this patch tested?
Existing unit tests.
Closes#23623 from SongYadong/configEntry_for_mem_storage.
Authored-by: SongYadong <song.yadong1@zte.com.cn>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
This PR fixes a bug where JSON schema inference attempts to convert every String value to a BigDecimal regardless of the setting of "prefersDecimal". With that bug, behavior is still correct, but performance is impacted.
This PR makes this conversion lazy, so it is only performed if prefersDecimal is set to true.
Using Spark with a single executor thread to infer the schema of a single-column, 100M row JSON file, the performance impact is as follows:
option | baseline | pr
-----|----|-----
inferTimestamp=_default_<br>prefersDecimal=_default_ | 12.5 minutes | 6.1 minutes |
inferTimestamp=false<br>prefersDecimal=_default_ | 6.5 minutes | 49 seconds |
inferTimestamp=false<br>prefersDecimal=true | 6.5 minutes | 6.5 minutes |
## How was this patch tested?
I ran JsonInferSchemaSuite and JsonSuite. Also, I ran manual tests to see performance impact (see above).
Closes#23653 from bersprockets/SPARK-26711_improved.
Authored-by: Bruce Robbins <bersprockets@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
## What changes were proposed in this pull request?
This patch proposes to fix issue on adding `current_timestamp` / `current_date` with streaming query.
The root reason is that Spark transforms `CurrentTimestamp`/`CurrentDate` to `CurrentBatchTimestamp` in MicroBatchExecution which makes transformed attributes not-yet-resolved. They will be resolved by IncrementalExecution.
(In ContinuousExecution, Spark doesn't allow using `current_timestamp` and `current_date` so it has been OK.)
It's OK for DataSource V1 sink because it simply leverages transformed logical plan and don't evaluate until they're resolved, but for DataSource V2 sink, Spark tries to extract the schema of transformed logical plan in prior to IncrementalExecution, and unresolved attributes will raise errors.
This patch fixes the issue via having separate pre-resolved logical plan to pass the schema to StreamingWriteSupport safely.
## How was this patch tested?
Added UT.
Closes#23609 from HeartSaVioR/SPARK-26379.
Authored-by: Jungtaek Lim (HeartSaVioR) <kabhwan@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
## What changes were proposed in this pull request?
Providing a new configuration "spark.yarn.un-managed-am" (defaults to false) to enable the Unmanaged AM Application in Yarn Client mode which launches the Application Master service as part of the Client. It utilizes the existing code for communicating between the Application Master <-> Task Scheduler for the container requests/allocations/launch, and eliminates these,
1. Allocating and launching the Application Master container
2. Remote Node/Process communication between Application Master <-> Task Scheduler
## How was this patch tested?
I verified manually running the applications in yarn-client mode with "spark.yarn.un-managed-am" enabled, and also ensured that there is no impact to the existing execution flows.
I would like to hear others feedback/thoughts on this.
Closes#19616 from devaraj-kavali/SPARK-22404.
Authored-by: Devaraj K <devaraj@apache.org>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
## What changes were proposed in this pull request?
There are ugly provided dependencies inside core for the following:
* Hive
* Kafka
In this PR I've extracted them out. This PR contains the following:
* Token providers are now loaded with service loader
* Hive token provider moved to hive project
* Kafka token provider extracted into a new project
## How was this patch tested?
Existing + newly added unit tests.
Additionally tested on cluster.
Closes#23499 from gaborgsomogyi/SPARK-26254.
Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
## What changes were proposed in this pull request?
SPARK-21568 made a change to ensure that progress bar is enabled for spark-shell
by default but not for other apps. Before that change, this was distinguished
using log-level which is not a good way to determine the same as users can change
the default log-level. That commit changed the way to determine whether current
app is running in spark-shell or not but it left the log-level part as it is,
which causes this regression. SPARK-25118 changed the default log level to INFO
for spark-shell because of which the progress bar is not enabled anymore.
This commit will remove the log-level check for enabling progress bar for
spark-shell as it is not necessary and seems to be a leftover from SPARK-21568
## How was this patch tested?
1. Ensured that progress bar is enabled with spark-shell by default
2. Ensured that progress bar is not enabled with spark-submit
Closes#23618 from ankuriitg/ankurgupta/SPARK-26694.
Authored-by: ankurgupta <ankur.gupta@cloudera.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
## What changes were proposed in this pull request?
In the PR, I propose to remove the following methods from `DateTimeUtils`:
- `timestampAddInterval` and `stringToTimestamp` - used only in test suites
- `truncTimestamp`, `getSeconds`, `getMinutes`, `getHours` - those methods assume system default time zone. They are not used in Spark.
## How was this patch tested?
This was tested by `DateTimeUtilsSuite` and `UnsafeArraySuite`.
Closes#23643 from MaxGekk/unused-date-time-utils.
Authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
Noop data source for batch was added in [#23471](https://github.com/apache/spark/pull/23471).
In this PR I've added the streaming part.
## How was this patch tested?
Additional unit tests.
Closes#23631 from gaborgsomogyi/SPARK-26649.
Authored-by: Gabor Somogyi <gabor.g.somogyi@gmail.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
## What changes were proposed in this pull request?
When reading from empty tables, the optimization `OptimizeMetadataOnlyQuery` may return wrong results:
```
sql("CREATE TABLE t (col1 INT, p1 INT) USING PARQUET PARTITIONED BY (p1)")
sql("INSERT INTO TABLE t PARTITION (p1 = 5) SELECT ID FROM range(1, 1)")
sql("SELECT MAX(p1) FROM t")
```
The result is supposed to be `null`. However, with the optimization the result is `5`.
The rule is originally ported from https://issues.apache.org/jira/browse/HIVE-1003 in #13494. In Hive, the rule is disabled by default in a later release(https://issues.apache.org/jira/browse/HIVE-15397), due to the same problem.
It is hard to completely avoid the correctness issue. Because data sources like Parquet can be metadata-only. Spark can't tell whether it is empty or not without actually reading it. This PR disable the optimization by default.
## How was this patch tested?
Unit test
Closes#23635 from gengliangwang/optimizeMetadata.
Lead-authored-by: Gengliang Wang <gengliang.wang@databricks.com>
Co-authored-by: Xiao Li <gatorsmile@gmail.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
## What changes were proposed in this pull request?
This PR proposes to add ML events to Instrumentation, and use it in Pipeline so that other developers can track and add some actions for them.
## Introduction
ML events (like SQL events) can be quite useful when people want to track and make some actions for corresponding ML operations. For instance, I have been working on integrating
Apache Spark with [Apache Atlas](https://atlas.apache.org/QuickStart.html). With some custom changes with this PR, I can visualise ML pipeline as below:
Another good thing that might have to be considered is, that we can interact this with other SQL/Streaming events. For instance, where the input `Dataset` is originated. For instance, with current Apache Spark, I can visualise SQL operations as below:
I think we can combine those existing lineages together to easily understand where the data comes and goes. Currently, ML side is a hole so the lineages can't be connected for the current Apache Spark ..
To add up, I think it's not to mention how useful it is to track the SQL/Streaming operations. Likewise, I would like to propose ML events as well (as lowest stability `Unstable` APIs for now - no guarantee about stability).
## Implementation Details
### Sends event (but not expose ML specific listener)
**`mllib/src/main/scala/org/apache/spark/ml/events.scala`**
```scala
Unstable
case class ...StartEvent(caller, input)
Unstable
case class ...EndEvent(caller, output)
trait MLEvents {
// Wrappers to send events:
// def with...Event(body) = {
// body()
// SparkContext.getOrCreate().listenerBus.post(event)
// }
}
```
This trait is used by `Instrumentation`.
```scala
class Instrumentation ... with MLEvents {
```
and used as below:
```scala
instrumented { instr =>
instr.with...Event(...) {
...
}
}
```
This way mimics both:
**1. Catalog events (see `org/apache/spark/sql/catalyst/catalog/events.scala`)**
- This allows a Catalog specific listener to be added `ExternalCatalogEventListener`
- It's implemented in a way of wrapping whole `ExternalCatalog` named `ExternalCatalogWithListener`
which delegates the operations to `ExternalCatalog`
This is not quite possible in this case because most of instances (like `Pipeline`) will be directly created in most of cases. We might be able to do that via extending `ListenerBus` for all possible instances but IMHO it's too invasive. Also, exposing another ML specific listener sounds a bit too much at this stage. Therefore, I simply borrowed file name and structures here
**2. SQL execution events (see `org/apache/spark/sql/execution/SQLExecution.scala`)**
- Add an object that wraps a body to send events
Current apporach is rather close to this. It has a `with...` wrapper to send events. I borrowed this approach to be consistent.
## Usage
It needs a custom implementation for a query listener. For instance,
with the custom listener below:
```scala
class CustomMLListener extends SparkListener
def onOtherEvents(e) = e match {
case e: MLEvent => // do something
case _ => // pass
}
}
```
There are two (existing) ways to use this.
```scala
spark.sparkContext.addSparkListener(new CustomMLListener)
```
```bash
spark-submit ...\
--conf spark.extraListeners=CustomMLListener\
...
```
It's also similar with other existing implementation in SQL side.
## Target users
1. I think someone in general would likely utilise this feature like other event listeners. At least, I can see some interests going on outside.
- SQL Listener
- https://stackoverflow.com/questions/46409339/spark-listener-to-an-sql-query
- http://apache-spark-user-list.1001560.n3.nabble.com/spark-sql-Custom-Query-Execution-listener-via-conf-properties-td30979.html
- Streaming Query Listener
- https://jhui.github.io/2017/01/15/Apache-Spark-Streaming/
- http://apache-spark-developers-list.1001551.n3.nabble.com/Structured-Streaming-with-Watermark-td25413.html#a25416
2. Someone would likely run this via Atlas. The plugin mirror intentionally is exposed at [spark-atlas-connector](https://github.com/hortonworks-spark/spark-atlas-connector) so that anyone could do something about lineage and governance in Atlas. I'm trying to show integrated lineages in Apache Spark but this is a missing hole.
## How was this patch tested?
Manually tested and unit tests were added.
Closes#23263 from HyukjinKwon/SPARK-23674-1.
Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
This PR adds Jenkins build and AppVeyor build badges
Take a look at cc24b9e0b3/README.md
## How was this patch tested?
Manually tested by `grip`.
Closes#23629 from HyukjinKwon/minor-badges.
Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
This is updated PR https://github.com/apache/spark/pull/16722 to latest master
## What changes were proposed in this pull request?
This patch adds support for sample weights to DecisionTreeRegressor and DecisionTreeClassifier.
Note: This patch does not add support for sample weights to RandomForest. As discussed in the JIRA, we would like to add sample weights into the bagging process. This patch is large enough as is, and there are some additional considerations to be made for random forests. Since the machinery introduced here needs to be present regardless, I have opted to leave random forests for a follow up pr.
## How was this patch tested?
The algorithms are tested to ensure that:
1. Arbitrary scaling of constant weights has no effect
2. Outliers with small weights do not affect the learned model
3. Oversampling and weighting are equivalent
Unit tests are also added to test other smaller components.
## Summary of changes
- Impurity aggregators now store weighted sufficient statistics. They also store a raw count, however, since this is needed to use minInstancesPerNode.
- Impurity aggregators now also hold the raw count.
- This patch maintains the meaning of minInstancesPerNode, in that the parameter still corresponds to raw, unweighted counts. It also adds a new parameter minWeightFractionPerNode which requires that nodes must contain at least minWeightFractionPerNode * weightedNumExamples total weight.
- This patch modifies findSplitsForContinuousFeatures to use weighted sums. Unit tests are added.
- TreePoint is modified to hold a sample weight
- BaggedPoint is modified from:
``` Scala
private[spark] class BaggedPoint[Datum](val datum: Datum, val subsampleWeights: Array[Double]) extends Serializable
```
to
``` Scala
private[spark] class BaggedPoint[Datum](
val datum: Datum,
val subsampleCounts: Array[Int],
val sampleWeight: Double) extends Serializable
```
We do not simply multiply the counts by the weight and store that because we need the raw counts and the weight in order to use both minInstancesPerNode and minWeightPerNode
**Note**: many of the changed files are due simply to using Instance instead of LabeledPoint
Closes#21632 from imatiach-msft/ilmat/sample-weights.
Authored-by: Ilya Matiach <ilmat@microsoft.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
To help debugging failed or slow tasks, its really useful to know the
size of the blocks getting fetched. Though that is available at the
debug level, debug logs aren't on in general -- but there is already an
info level log line that this augments a little.
## How was this patch tested?
Ran very basic local-cluster mode app, looked at logs. Example line:
```
INFO ShuffleBlockFetcherIterator: Getting 2 (194.0 B) non-empty blocks including 1 (97.0 B) local blocks and 1 (97.0 B) remote blocks
```
Full suite via jenkins.
Closes#23621 from squito/SPARK-26697.
Authored-by: Imran Rashid <irashid@cloudera.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
## What changes were proposed in this pull request?
Currently, heartbeat related arguments is not validated in spark, so if these args are inproperly specified, the Application may run for a while and not failed until the max executor failures reached(especially with spark.dynamicAllocation.enabled=true), thus may incurs resources waste.
This PR is to precheck these arguments in HeartbeatReceiver to fix this problem.
## How was this patch tested?
NA-just validation changes
Closes#23445 from liupc/validate-heartbeat-arguments-in-SparkSubmitArguments.
Authored-by: Liupengcheng <liupengcheng@xiaomi.com>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
## What changes were proposed in this pull request?
With the changes from vanzin's PR #23019 (SPARK-26025) we use a pared down temporary Docker build context which significantly improves build times. However the way this is implemented leads to non-intuitive behaviour when supplying custom Docker file paths. This is because of the following code snippets:
```
(cd $(img_ctx_dir base) && docker build $NOCACHEARG "${BUILD_ARGS[]}" \
-t $(image_ref spark) \
-f "$BASEDOCKERFILE" .)
```
Since the script changes to the temporary build context directory and then runs `docker build` there any path given for the Docker file is taken as relative to the temporary build context directory rather than to the directory where the user invoked the script. This is rather unintuitive and produces somewhat unhelpful errors e.g.
```
> ./bin/docker-image-tool.sh -r rvesse -t badpath -p resource-managers/kubernetes/docker/src/main/dockerfiles/spark/bindings/python/Dockerfile build
Sending build context to Docker daemon 218.4MB
Step 1/15 : FROM openjdk:8-alpine
---> 5801f7d008e5
Step 2/15 : ARG spark_uid=185
---> Using cache
---> 5fd63df1ca39
...
Successfully tagged rvesse/spark:badpath
unable to prepare context: unable to evaluate symlinks in Dockerfile path: lstat /Users/rvesse/Documents/Work/Code/spark/target/tmp/docker/pyspark/resource-managers: no such file or directory
Failed to build PySpark Docker image, please refer to Docker build output for details.
```
Here we can see that the relative path that was valid where the user typed the command was not valid inside the build context directory.
To resolve this we need to ensure that we are resolving relative paths to Docker files appropriately which we do by adding a `resolve_file` function to the script and invoking that on the supplied Docker file paths
## How was this patch tested?
Validated that relative paths now work as expected:
```
> ./bin/docker-image-tool.sh -r rvesse -t badpath -p resource-managers/kubernetes/docker/src/main/dockerfiles/spark/bindings/python/Dockerfile build
Sending build context to Docker daemon 218.4MB
Step 1/15 : FROM openjdk:8-alpine
---> 5801f7d008e5
Step 2/15 : ARG spark_uid=185
---> Using cache
---> 5fd63df1ca39
Step 3/15 : RUN set -ex && apk upgrade --no-cache && apk add --no-cache bash tini libc6-compat linux-pam krb5 krb5-libs && mkdir -p /opt/spark && mkdir -p /opt/spark/examples && mkdir -p /opt/spark/work-dir && touch /opt/spark/RELEASE && rm /bin/sh && ln -sv /bin/bash /bin/sh && echo "auth required pam_wheel.so use_uid" >> /etc/pam.d/su && chgrp root /etc/passwd && chmod ug+rw /etc/passwd
---> Using cache
---> eb0a568e032f
Step 4/15 : COPY jars /opt/spark/jars
...
Successfully tagged rvesse/spark:badpath
Sending build context to Docker daemon 6.599MB
Step 1/13 : ARG base_img
Step 2/13 : ARG spark_uid=185
Step 3/13 : FROM $base_img
---> 8f4fff16f903
Step 4/13 : WORKDIR /
---> Running in 25466e66f27f
Removing intermediate container 25466e66f27f
---> 1470b6efae61
Step 5/13 : USER 0
---> Running in b094b739df37
Removing intermediate container b094b739df37
---> 6a27eb4acad3
Step 6/13 : RUN mkdir ${SPARK_HOME}/python
---> Running in bc8002c5b17c
Removing intermediate container bc8002c5b17c
---> 19bb12f4286a
Step 7/13 : RUN apk add --no-cache python && apk add --no-cache python3 && python -m ensurepip && python3 -m ensurepip && rm -r /usr/lib/python*/ensurepip && pip install --upgrade pip setuptools && rm -r /root/.cache
---> Running in 12dcba5e527f
...
Successfully tagged rvesse/spark-py:badpath
```
Closes#23613 from rvesse/SPARK-26687.
Authored-by: Rob Vesse <rvesse@dotnetrdf.org>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
## What changes were proposed in this pull request?
Checkpoints of Dataframes currently do not show up in SQL UI. This PR fixes that by setting an execution id for the execution of the checkpoint by wrapping the checkpoint code with a `withAction`.
## How was this patch tested?
A unit test was added to DatasetSuite.
Closes#23636 from tomvanbussel/SPARK-26690.
Authored-by: Tom van Bussel <tom.vanbussel@databricks.com>
Signed-off-by: Herman van Hovell <hvanhovell@databricks.com>
## What changes were proposed in this pull request?
When a user passes a Stream to groupBy, ```CodegenSupport.consume``` ends up lazily generating ```inputVars``` from a Stream, since the field ```output``` will be a Stream. At the time ```output.zipWithIndex.map``` is called, conditions are correct. However, by the time the map operation actually executes, conditions are no longer appropriate. The closure used by the map operation ends up using a reference to the partially created ```inputVars```. As a result, a StackOverflowError occurs.
This PR ensures that ```inputVars``` is eagerly created while conditions are appropriate. It seems this was also an issue with the code path for creating ```inputVars``` from ```outputVars``` (SPARK-25767). I simply extended the solution for that code path to encompass both code paths.
## How was this patch tested?
SQL unit tests
new test
python tests
Closes#23617 from bersprockets/SPARK-26680_opt1.
Authored-by: Bruce Robbins <bersprockets@gmail.com>
Signed-off-by: Herman van Hovell <hvanhovell@databricks.com>
## What changes were proposed in this pull request?
Updates the attempt ID used by FileFormatWriter. Tasks in stage attempts use the same task attempt number and could conflict. Using Spark's task attempt ID guarantees that Hadoop TaskAttemptID instances are unique.
## How was this patch tested?
Existing tests. Also validated that we no longer detect this failure case in our logs after deployment.
Closes#23608 from rdblue/SPARK-26682-fix-hadoop-task-attempt-id.
Authored-by: Ryan Blue <blue@apache.org>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
## What changes were proposed in this pull request?
Fixed several places in CacheManager where a write lock was being held while running the query optimizer. This could cause a very lock block if the query optimization takes a long time. This builds on changes from [SPARK-26548] that fixed this issue for one specific case in the CacheManager.
gatorsmile This is very similar to the PR you approved last week.
## How was this patch tested?
Has been tested on a live system where the blocking was causing major issues and it is working well.
CacheManager has no explicit unit test but is used in many places internally as part of the SharedState.
Closes#23539 from DaveDeCaprio/cache-manager-locks.
Lead-authored-by: Dave DeCaprio <daved@alum.mit.edu>
Co-authored-by: David DeCaprio <daved@alum.mit.edu>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
## What changes were proposed in this pull request?
Implement copy() for ColumnarArray
## How was this patch tested?
Updating test case to existing tests in ColumnVectorSuite
Closes#23569 from ayudovin/copy-for-columnArray.
Authored-by: ayudovin <a.yudovin6695@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
## What changes were proposed in this pull request?
This PR contains a minor change in `Cast$mayTruncate` that fixes its logic for bytes.
Right now, `mayTruncate(ByteType, LongType)` returns `false` while `mayTruncate(ShortType, LongType)` returns `true`. Consequently, `spark.range(1, 3).as[Byte]` and `spark.range(1, 3).as[Short]` behave differently.
Potentially, this bug can silently corrupt someone's data.
```scala
// executes silently even though Long is converted into Byte
spark.range(Long.MaxValue - 10, Long.MaxValue).as[Byte]
.map(b => b - 1)
.show()
+-----+
|value|
+-----+
| -12|
| -11|
| -10|
| -9|
| -8|
| -7|
| -6|
| -5|
| -4|
| -3|
+-----+
// throws an AnalysisException: Cannot up cast `id` from bigint to smallint as it may truncate
spark.range(Long.MaxValue - 10, Long.MaxValue).as[Short]
.map(s => s - 1)
.show()
```
## How was this patch tested?
This PR comes with a set of unit tests.
Closes#23632 from aokolnychyi/cast-fix.
Authored-by: Anton Okolnychyi <aokolnychyi@apple.com>
Signed-off-by: DB Tsai <d_tsai@apple.com>
## What changes were proposed in this pull request?
Currently, some ML library may generate large ml model, which may be referenced in the task closure, so driver will broadcasting large task binary, and executor may not able to deserialize it and result in OOM failures(for instance, executor's memory is not enough). This problem not only affects apps using ml library, some user specified closure or function which refers large data may also have this problem.
In order to facilitate the debuging of memory problem caused by large taskBinary broadcast, we can add same warning logs for it.
This PR will add some warning logs on the driver side when broadcasting a large task binary, and it also included some minor log changes in the reading of broadcast.
## How was this patch tested?
NA-Just log changes.
Please review http://spark.apache.org/contributing.html before opening a pull request.
Closes#23580 from liupc/Add-warning-logs-for-large-taskBinary-size.
Authored-by: Liupengcheng <liupengcheng@xiaomi.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
This adds a new pattern to recognize Ammonite REPL classes and return the correct scope.
## How was this patch tested?
Manually tested with Spark in an Ammonite session.
Closes#23607 from rdblue/SPARK-26681-support-ammonite-scopes.
Authored-by: Ryan Blue <blue@apache.org>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
In the PR, I propose using of the `stringToDate` and `stringToTimestamp` methods in parsing JDBC lower/upper bounds of the partition column if it has `DateType` or `TimestampType`. Since those methods have been ported on Proleptic Gregorian calendar by #23512, the PR switches parsing of JDBC bounds of the partition column on the calendar as well.
## How was this patch tested?
This was tested by `JDBCSuite`.
Closes#23597 from MaxGekk/jdbc-parse-timestamp-bounds.
Lead-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Co-authored-by: Maxim Gekk <max.gekk@gmail.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
## What changes were proposed in this pull request?
In the master, GetArrayItem nullable is always true;
cf133e6110/sql/catalyst/src/main/scala/org/apache/spark/sql/catalyst/expressions/complexTypeExtractors.scala (L236)
But, If input array size is constant and ordinal is foldable, we could make GetArrayItem nullability more precise. This pr added code to make `GetArrayItem` nullability more precise.
## How was this patch tested?
Added tests in `ComplexTypeSuite`.
Closes#23566 from maropu/GetArrayItemNullability.
Authored-by: Takeshi Yamamuro <yamamuro@apache.org>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
## What changes were proposed in this pull request?
Followup of #20091. We could also use existing partitioner when defaultNumPartitions is equal to the maxPartitioner's numPartitions.
## How was this patch tested?
Existed.
Closes#23581 from Ngone51/dev-use-existing-partitioner-when-defaultNumPartitions-equalTo-MaxPartitioner#-numPartitions.
Authored-by: Ngone51 <ngone_5451@163.com>
Signed-off-by: Wenchen Fan <wenchen@databricks.com>
## What changes were proposed in this pull request?
Avoid memory problems in closure cleaning when handling large Gramians (>= 16K rows/cols) by using null as zeroValue
## How was this patch tested?
Existing tests.
Note that it's hard to test the case that triggers this issue as it would require a large amount of memory and run a while. I confirmed locally that a 16K x 16K Gramian failed with tons of driver memory before, and didn't fail upfront after this change.
Closes#23600 from srowen/SPARK-26228.
Authored-by: Sean Owen <sean.owen@databricks.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
Documentation and .gitignore
## How was this patch tested?
Manual test that SBT honors the settings in .jvmopts if present
Closes#23615 from sadhen/impr/gitignore.
Authored-by: Darcy Shen <sadhen@zoho.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
The explain output of the Hive CTAS command, regardless of whether it's actually writing via Hive's SerDe or converted into using Spark's data source, would always show that it's using `InsertIntoHiveTable` because it's hardcoded.
e.g.
```
Execute OptimizedCreateHiveTableAsSelectCommand [Database:default, TableName: foo, InsertIntoHiveTable]
```
This CTAS is converted into using Spark's data source, but it still says `InsertIntoHiveTable` in the explain output.
It's better to show the actual class name of the writing command used. For the example above, it'd be:
```
Execute OptimizedCreateHiveTableAsSelectCommand [Database:default, TableName: foo, InsertIntoHadoopFsRelationCommand]
```
## How was this patch tested?
Added test case in `HiveExplainSuite`
Closes#23582 from rednaxelafx/fix-explain-1.
Authored-by: Kris Mok <kris.mok@databricks.com>
Signed-off-by: Dongjoon Hyun <dongjoon@apache.org>
Latest Docker releases are stricter in their enforcement of build argument scope. The location of the `ARG spark_uid` declaration in the Python and R Dockerfiles means the variable is out of scope by the time it is used in a `USER` declaration resulting in a container running as root rather than the default/configured UID.
Also with some of the refactoring of the script that has happened since my PR that introduced the configurable UID it turns out the `-u <uid>` argument is not being properly passed to the Python and R image builds when those are opted into
## What changes were proposed in this pull request?
This commit moves the `ARG` declaration to just before the argument is used such that it is in scope. It also ensures that Python and R image builds receive the build arguments that include the `spark_uid` argument where relevant
## How was this patch tested?
Prior to the patch images are produced where the Python and R images ignore the default/configured UID:
```
> docker run -it --entrypoint /bin/bash rvesse/spark-py:uid456
bash-4.4# whoami
root
bash-4.4# id -u
0
bash-4.4# exit
> docker run -it --entrypoint /bin/bash rvesse/spark:uid456
bash-4.4$ id -u
456
bash-4.4$ exit
```
Note that the Python image is still running as `root` having ignored the configured UID of 456 while the base image has the correct UID because the relevant `ARG` declaration is correctly in scope.
After the patch the correct UID is observed:
```
> docker run -it --entrypoint /bin/bash rvesse/spark-r:uid456
bash-4.4$ id -u
456
bash-4.4$ exit
exit
> docker run -it --entrypoint /bin/bash rvesse/spark-py:uid456
bash-4.4$ id -u
456
bash-4.4$ exit
exit
> docker run -it --entrypoint /bin/bash rvesse/spark:uid456
bash-4.4$ id -u
456
bash-4.4$ exit
```
Closes#23611 from rvesse/SPARK-26685.
Authored-by: Rob Vesse <rvesse@dotnetrdf.org>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
This enhancement allows for specifying the desired context to use for the initial K8S client auto-configuration. This allows users to more easily access alternative K8S contexts without having to first
explicitly change their current context via kubectl.
Explicitly set my K8S context to a context pointing to a non-existent cluster, then launched Spark jobs with explicitly specified contexts via the new `spark.kubernetes.context` configuration property.
Example Output:
```
> kubectl config current-context
minikube
> minikube status
minikube: Stopped
cluster:
kubectl:
> ./spark-submit --master k8s://https://localhost:6443 --deploy-mode cluster --name spark-pi --class org.apache.spark.examples.SparkPi --conf spark.executor.instances=2 --conf spark.kubernetes.context=docker-for-desktop --conf spark.kubernetes.container.image=rvesse/spark:debian local:///opt/spark/examples/jars/spark-examples_2.11-3.0.0-SNAPSHOT.jar 4
18/10/31 11:57:51 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
18/10/31 11:57:51 INFO SparkKubernetesClientFactory: Auto-configuring K8S client using context docker-for-desktop from users K8S config file
18/10/31 11:57:52 INFO LoggingPodStatusWatcherImpl: State changed, new state:
pod name: spark-pi-1540987071845-driver
namespace: default
labels: spark-app-selector -> spark-2c4abc226ed3415986eb602bd13f3582, spark-role -> driver
pod uid: 32462cac-dd04-11e8-b6c6-025000000001
creation time: 2018-10-31T11:57:52Z
service account name: default
volumes: spark-local-dir-1, spark-conf-volume, default-token-glpfv
node name: N/A
start time: N/A
phase: Pending
container status: N/A
18/10/31 11:57:52 INFO LoggingPodStatusWatcherImpl: State changed, new state:
pod name: spark-pi-1540987071845-driver
namespace: default
labels: spark-app-selector -> spark-2c4abc226ed3415986eb602bd13f3582, spark-role -> driver
pod uid: 32462cac-dd04-11e8-b6c6-025000000001
creation time: 2018-10-31T11:57:52Z
service account name: default
volumes: spark-local-dir-1, spark-conf-volume, default-token-glpfv
node name: docker-for-desktop
start time: N/A
phase: Pending
container status: N/A
...
18/10/31 11:58:03 INFO LoggingPodStatusWatcherImpl: State changed, new state:
pod name: spark-pi-1540987071845-driver
namespace: default
labels: spark-app-selector -> spark-2c4abc226ed3415986eb602bd13f3582, spark-role -> driver
pod uid: 32462cac-dd04-11e8-b6c6-025000000001
creation time: 2018-10-31T11:57:52Z
service account name: default
volumes: spark-local-dir-1, spark-conf-volume, default-token-glpfv
node name: docker-for-desktop
start time: 2018-10-31T11:57:52Z
phase: Succeeded
container status:
container name: spark-kubernetes-driver
container image: rvesse/spark:debian
container state: terminated
container started at: 2018-10-31T11:57:54Z
container finished at: 2018-10-31T11:58:02Z
exit code: 0
termination reason: Completed
```
Without the `spark.kubernetes.context` setting this will fail because the current context - `minikube` - is pointing to a non-running cluster e.g.
```
> ./spark-submit --master k8s://https://localhost:6443 --deploy-mode cluster --name spark-pi --class org.apache.spark.examples.SparkPi --conf spark.executor.instances=2 --conf spark.kubernetes.container.image=rvesse/spark:debian local:///opt/spark/examples/jars/spark-examples_2.11-3.0.0-SNAPSHOT.jar 4
18/10/31 12:02:30 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
18/10/31 12:02:30 INFO SparkKubernetesClientFactory: Auto-configuring K8S client using current context from users K8S config file
18/10/31 12:02:31 WARN WatchConnectionManager: Exec Failure
javax.net.ssl.SSLHandshakeException: sun.security.validator.ValidatorException: PKIX path building failed: sun.security.provider.certpath.SunCertPathBuilderException: unable to find valid certification path to requested target
at sun.security.ssl.Alerts.getSSLException(Alerts.java:192)
at sun.security.ssl.SSLSocketImpl.fatal(SSLSocketImpl.java:1949)
at sun.security.ssl.Handshaker.fatalSE(Handshaker.java:302)
at sun.security.ssl.Handshaker.fatalSE(Handshaker.java:296)
at sun.security.ssl.ClientHandshaker.serverCertificate(ClientHandshaker.java:1509)
at sun.security.ssl.ClientHandshaker.processMessage(ClientHandshaker.java:216)
at sun.security.ssl.Handshaker.processLoop(Handshaker.java:979)
at sun.security.ssl.Handshaker.process_record(Handshaker.java:914)
at sun.security.ssl.SSLSocketImpl.readRecord(SSLSocketImpl.java:1062)
at sun.security.ssl.SSLSocketImpl.performInitialHandshake(SSLSocketImpl.java:1375)
at sun.security.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:1403)
at sun.security.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:1387)
at okhttp3.internal.connection.RealConnection.connectTls(RealConnection.java:281)
at okhttp3.internal.connection.RealConnection.establishProtocol(RealConnection.java:251)
at okhttp3.internal.connection.RealConnection.connect(RealConnection.java:151)
at okhttp3.internal.connection.StreamAllocation.findConnection(StreamAllocation.java:195)
at okhttp3.internal.connection.StreamAllocation.findHealthyConnection(StreamAllocation.java:121)
at okhttp3.internal.connection.StreamAllocation.newStream(StreamAllocation.java:100)
at okhttp3.internal.connection.ConnectInterceptor.intercept(ConnectInterceptor.java:42)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at okhttp3.internal.cache.CacheInterceptor.intercept(CacheInterceptor.java:93)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at okhttp3.internal.http.BridgeInterceptor.intercept(BridgeInterceptor.java:93)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RetryAndFollowUpInterceptor.intercept(RetryAndFollowUpInterceptor.java:120)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at io.fabric8.kubernetes.client.utils.BackwardsCompatibilityInterceptor.intercept(BackwardsCompatibilityInterceptor.java:119)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at io.fabric8.kubernetes.client.utils.ImpersonatorInterceptor.intercept(ImpersonatorInterceptor.java:66)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at io.fabric8.kubernetes.client.utils.HttpClientUtils$2.intercept(HttpClientUtils.java:109)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at okhttp3.RealCall.getResponseWithInterceptorChain(RealCall.java:185)
at okhttp3.RealCall$AsyncCall.execute(RealCall.java:135)
at okhttp3.internal.NamedRunnable.run(NamedRunnable.java:32)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: sun.security.validator.ValidatorException: PKIX path building failed: sun.security.provider.certpath.SunCertPathBuilderException: unable to find valid certification path to requested target
at sun.security.validator.PKIXValidator.doBuild(PKIXValidator.java:387)
at sun.security.validator.PKIXValidator.engineValidate(PKIXValidator.java:292)
at sun.security.validator.Validator.validate(Validator.java:260)
at sun.security.ssl.X509TrustManagerImpl.validate(X509TrustManagerImpl.java:324)
at sun.security.ssl.X509TrustManagerImpl.checkTrusted(X509TrustManagerImpl.java:229)
at sun.security.ssl.X509TrustManagerImpl.checkServerTrusted(X509TrustManagerImpl.java:124)
at sun.security.ssl.ClientHandshaker.serverCertificate(ClientHandshaker.java:1491)
... 39 more
Caused by: sun.security.provider.certpath.SunCertPathBuilderException: unable to find valid certification path to requested target
at sun.security.provider.certpath.SunCertPathBuilder.build(SunCertPathBuilder.java:141)
at sun.security.provider.certpath.SunCertPathBuilder.engineBuild(SunCertPathBuilder.java:126)
at java.security.cert.CertPathBuilder.build(CertPathBuilder.java:280)
at sun.security.validator.PKIXValidator.doBuild(PKIXValidator.java:382)
... 45 more
Exception in thread "kubernetes-dispatcher-0" Exception in thread "main" java.util.concurrent.RejectedExecutionException: Task java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask611a9c09 rejected from java.util.concurrent.ScheduledThreadPoolExecutor404819e4[Terminated, pool size = 0, active threads = 0, queued tasks = 0, completed tasks = 0]
at java.util.concurrent.ThreadPoolExecutor$AbortPolicy.rejectedExecution(ThreadPoolExecutor.java:2047)
at java.util.concurrent.ThreadPoolExecutor.reject(ThreadPoolExecutor.java:823)
at java.util.concurrent.ScheduledThreadPoolExecutor.delayedExecute(ScheduledThreadPoolExecutor.java:326)
at java.util.concurrent.ScheduledThreadPoolExecutor.schedule(ScheduledThreadPoolExecutor.java:533)
at java.util.concurrent.ScheduledThreadPoolExecutor.submit(ScheduledThreadPoolExecutor.java:632)
at java.util.concurrent.Executors$DelegatedExecutorService.submit(Executors.java:678)
at io.fabric8.kubernetes.client.dsl.internal.WatchConnectionManager.scheduleReconnect(WatchConnectionManager.java:300)
at io.fabric8.kubernetes.client.dsl.internal.WatchConnectionManager.access$800(WatchConnectionManager.java:48)
at io.fabric8.kubernetes.client.dsl.internal.WatchConnectionManager$2.onFailure(WatchConnectionManager.java:213)
at okhttp3.internal.ws.RealWebSocket.failWebSocket(RealWebSocket.java:543)
at okhttp3.internal.ws.RealWebSocket$2.onFailure(RealWebSocket.java:208)
at okhttp3.RealCall$AsyncCall.execute(RealCall.java:148)
at okhttp3.internal.NamedRunnable.run(NamedRunnable.java:32)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
io.fabric8.kubernetes.client.KubernetesClientException: Failed to start websocket
at io.fabric8.kubernetes.client.dsl.internal.WatchConnectionManager$2.onFailure(WatchConnectionManager.java:204)
at okhttp3.internal.ws.RealWebSocket.failWebSocket(RealWebSocket.java:543)
at okhttp3.internal.ws.RealWebSocket$2.onFailure(RealWebSocket.java:208)
at okhttp3.RealCall$AsyncCall.execute(RealCall.java:148)
at okhttp3.internal.NamedRunnable.run(NamedRunnable.java:32)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: javax.net.ssl.SSLHandshakeException: sun.security.validator.ValidatorException: PKIX path building failed: sun.security.provider.certpath.SunCertPathBuilderException: unable to find valid certification path to requested target
at sun.security.ssl.Alerts.getSSLException(Alerts.java:192)
at sun.security.ssl.SSLSocketImpl.fatal(SSLSocketImpl.java:1949)
at sun.security.ssl.Handshaker.fatalSE(Handshaker.java:302)
at sun.security.ssl.Handshaker.fatalSE(Handshaker.java:296)
at sun.security.ssl.ClientHandshaker.serverCertificate(ClientHandshaker.java:1509)
at sun.security.ssl.ClientHandshaker.processMessage(ClientHandshaker.java:216)
at sun.security.ssl.Handshaker.processLoop(Handshaker.java:979)
at sun.security.ssl.Handshaker.process_record(Handshaker.java:914)
at sun.security.ssl.SSLSocketImpl.readRecord(SSLSocketImpl.java:1062)
at sun.security.ssl.SSLSocketImpl.performInitialHandshake(SSLSocketImpl.java:1375)
at sun.security.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:1403)
at sun.security.ssl.SSLSocketImpl.startHandshake(SSLSocketImpl.java:1387)
at okhttp3.internal.connection.RealConnection.connectTls(RealConnection.java:281)
at okhttp3.internal.connection.RealConnection.establishProtocol(RealConnection.java:251)
at okhttp3.internal.connection.RealConnection.connect(RealConnection.java:151)
at okhttp3.internal.connection.StreamAllocation.findConnection(StreamAllocation.java:195)
at okhttp3.internal.connection.StreamAllocation.findHealthyConnection(StreamAllocation.java:121)
at okhttp3.internal.connection.StreamAllocation.newStream(StreamAllocation.java:100)
at okhttp3.internal.connection.ConnectInterceptor.intercept(ConnectInterceptor.java:42)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at okhttp3.internal.cache.CacheInterceptor.intercept(CacheInterceptor.java:93)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at okhttp3.internal.http.BridgeInterceptor.intercept(BridgeInterceptor.java:93)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RetryAndFollowUpInterceptor.intercept(RetryAndFollowUpInterceptor.java:120)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at io.fabric8.kubernetes.client.utils.BackwardsCompatibilityInterceptor.intercept(BackwardsCompatibilityInterceptor.java:119)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at io.fabric8.kubernetes.client.utils.ImpersonatorInterceptor.intercept(ImpersonatorInterceptor.java:66)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at io.fabric8.kubernetes.client.utils.HttpClientUtils$2.intercept(HttpClientUtils.java:109)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
at okhttp3.RealCall.getResponseWithInterceptorChain(RealCall.java:185)
at okhttp3.RealCall$AsyncCall.execute(RealCall.java:135)
... 4 more
Caused by: sun.security.validator.ValidatorException: PKIX path building failed: sun.security.provider.certpath.SunCertPathBuilderException: unable to find valid certification path to requested target
at sun.security.validator.PKIXValidator.doBuild(PKIXValidator.java:387)
at sun.security.validator.PKIXValidator.engineValidate(PKIXValidator.java:292)
at sun.security.validator.Validator.validate(Validator.java:260)
at sun.security.ssl.X509TrustManagerImpl.validate(X509TrustManagerImpl.java:324)
at sun.security.ssl.X509TrustManagerImpl.checkTrusted(X509TrustManagerImpl.java:229)
at sun.security.ssl.X509TrustManagerImpl.checkServerTrusted(X509TrustManagerImpl.java:124)
at sun.security.ssl.ClientHandshaker.serverCertificate(ClientHandshaker.java:1491)
... 39 more
Caused by: sun.security.provider.certpath.SunCertPathBuilderException: unable to find valid certification path to requested target
at sun.security.provider.certpath.SunCertPathBuilder.build(SunCertPathBuilder.java:141)
at sun.security.provider.certpath.SunCertPathBuilder.engineBuild(SunCertPathBuilder.java:126)
at java.security.cert.CertPathBuilder.build(CertPathBuilder.java:280)
at sun.security.validator.PKIXValidator.doBuild(PKIXValidator.java:382)
... 45 more
18/10/31 12:02:31 INFO ShutdownHookManager: Shutdown hook called
18/10/31 12:02:31 INFO ShutdownHookManager: Deleting directory /private/var/folders/6b/y1010qp107j9w2dhhy8csvz0000xq3/T/spark-5e649891-8a0f-4f17-bf3a-33b34082eba8
```
Suggested reviews: mccheah liyinan926 - this is the follow up fix to the bug discovered while working on SPARK-25809 (PR #22805)
Closes#22904 from rvesse/SPARK-25887.
Authored-by: Rob Vesse <rvesse@dotnetrdf.org>
Signed-off-by: Marcelo Vanzin <vanzin@cloudera.com>
## What changes were proposed in this pull request?
`ByteBuffer.allocate` may throw `OutOfMemoryError` when the block is large but no enough memory is available. However, when this happens, right now BlockTransferService.fetchBlockSync will just hang forever as its `BlockFetchingListener. onBlockFetchSuccess` doesn't complete `Promise`.
This PR catches `Throwable` and uses the error to complete `Promise`.
## How was this patch tested?
Added a unit test. Since I cannot make `ByteBuffer.allocate` throw `OutOfMemoryError`, I passed a negative size to make `ByteBuffer.allocate` fail. Although the error type is different, it should trigger the same code path.
Closes#23590 from zsxwing/SPARK-26665.
Authored-by: Shixiong Zhu <zsxwing@gmail.com>
Signed-off-by: Shixiong Zhu <zsxwing@gmail.com>
## What changes were proposed in this pull request?
The expressions `DayWeek`, `DayOfWeek`, `WeekDay` and `WeekOfYear` are changed to use Proleptic Gregorian calendar instead of the hybrid one (Julian+Gregorian). This was achieved by using Java 8 API for date/timestamp manipulation, in particular the `LocalDate` class.
Week of year calculation is performed according to ISO-8601. The first week of a week-based-year is the first Monday-based week of the standard ISO year that has at least 4 days in the new year (see https://docs.oracle.com/javase/8/docs/api/java/time/temporal/IsoFields.html).
## How was this patch tested?
The changes were tested by `DateExpressionsSuite` and `DateFunctionsSuite`.
Closes#23594 from MaxGekk/dayweek-gregorian.
Lead-authored-by: Maxim Gekk <max.gekk@gmail.com>
Co-authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Signed-off-by: Herman van Hovell <hvanhovell@databricks.com>
## What changes were proposed in this pull request?
Add PMML export support for ML KMeans to PySpark.
## How was this patch tested?
Add tests in ml.tests.PersistenceTest.
Closes#23592 from huaxingao/spark-16838.
Authored-by: Huaxin Gao <huaxing@us.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
In MessageEncoder.java, the header would always be allocated on onheap memory regardless of whether netty was configured to use/prefer onheap or offheap. By default this made netty allocate 16mb of onheap memory for a tiny header message. It would be more practical to use preallocated buffers.
Using a memory monitor tool on a simple spark application, the following services currently allocate 16 mb of onheap memory:
netty-rpc-client
netty-blockTransfer-client
netty-external-shuffle-client
With this change, the memory monitor tool reports all three of these services as using 0 b of onheap memory. The offheap memory allocation does not increase, but more of the already-allocated space is used.
## How was this patch tested?
Manually tested change using spark-memory-tool https://github.com/squito/spark-memoryCloses#22114 from NiharS/nettybuffer.
Lead-authored-by: Nihar Sheth <niharrsheth@gmail.com>
Co-authored-by: Nihar Sheth <nsheth@cloudera.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
The PR makes hardcoded `spark.dynamicAllocation`, `spark.scheduler`, `spark.rpc`, `spark.task`, `spark.speculation`, and `spark.cleaner` configs to use `ConfigEntry`.
## How was this patch tested?
Existing tests
Closes#23416 from kiszk/SPARK-26463.
Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
This change exposes the `df` (document frequency) as a public val along with the number of documents (`m`) as part of the IDF model.
* The document frequency is returned as an `Array[Long]`
* If the minimum document frequency is set, this is considered in the df calculation. If the count is less than minDocFreq, the df is 0 for such terms
* numDocs is not very required. But it can be useful, if we plan to provide a provision in future for user to give their own idf function, instead of using a default (log((1+m)/(1+df))). In such cases, the user can provide a function taking input of `m` and `df` and returning the idf value
* Pyspark changes
## How was this patch tested?
The existing test case was edited to also check for the document frequency values.
I am not very good with python or pyspark. I have committed and run tests based on my understanding. Kindly let me know if I have missed anything
Reviewer request: mengxr zjffdu yinxusen
Closes#23549 from purijatin/master.
Authored-by: Jatin Puri <purijatin@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
Since 0.11.0, PyArrow supports to raise an error for unsafe cast ([PR](https://github.com/apache/arrow/pull/2504)). We should use it to raise a proper error for pandas udf users when such cast is detected.
Added a SQL config `spark.sql.execution.pandas.arrowSafeTypeConversion` to disable Arrow safe type check.
## How was this patch tested?
Added test and manually test.
Closes#22807 from viirya/SPARK-25811.
Authored-by: Liang-Chi Hsieh <viirya@gmail.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
Following https://github.com/apache/spark/pull/23086, this PR does the API refactor for micro-batch read, w.r.t. the [doc](https://docs.google.com/document/d/1uUmKCpWLdh9vHxP7AWJ9EgbwB_U6T3EJYNjhISGmiQg/edit?usp=sharing)
The major changes:
1. rename `XXXMicroBatchReadSupport` to `XXXMicroBatchReadStream`
2. implement `TableProvider`, `Table`, `ScanBuilder` and `Scan` for streaming sources
3. at the beginning of micro-batch streaming execution, convert `StreamingRelationV2` to `StreamingDataSourceV2Relation` directly, instead of `StreamingExecutionRelation`.
followup:
support operator pushdown for stream sources
## How was this patch tested?
existing tests
Closes#23430 from cloud-fan/micro-batch.
Authored-by: Wenchen Fan <wenchen@databricks.com>
Signed-off-by: gatorsmile <gatorsmile@gmail.com>
## What changes were proposed in this pull request?
This particular test is being skipped at PyPy and Python 2.
```
Skipped tests in pyspark.sql.tests.test_context with pypy:
test_unbounded_frames (pyspark.sql.tests.test_context.HiveContextSQLTests) ... skipped "Unittest < 3.3 doesn't support mocking"
Skipped tests in pyspark.sql.tests.test_context with python2.7:
test_unbounded_frames (pyspark.sql.tests.test_context.HiveContextSQLTests) ... skipped "Unittest < 3.3 doesn't support mocking"
```
We don't have to use unittest 3.3 module to mock. And looks the test itself isn't compatible with Python 2.
This PR makes:
- Manually monkey-patch `sys.maxsize` to get rid of unittest 3.3 condition
- Use the built-in `reload` in Python 2, and `importlib.reload` in Python 3
## How was this patch tested?
Manually tested, and unit test is fixed.
Closes#23604 from HyukjinKwon/test-window.
Authored-by: Hyukjin Kwon <gurwls223@apache.org>
Signed-off-by: Bryan Cutler <cutlerb@gmail.com>
## What changes were proposed in this pull request?
The `fromString` and `fromJSON` methods of the `Literal` object are removed because they are not used.
Closes#23596Closes#23603 from MaxGekk/remove-literal-fromstring.
Authored-by: Maxim Gekk <maxim.gekk@databricks.com>
Signed-off-by: Hyukjin Kwon <gurwls223@apache.org>
## What changes were proposed in this pull request?
Currently, there are some minor inconsistencies in doc compared to the code. In this PR, I am correcting those inconsistencies.
1) Links related to the evaluation metrics in the docs are not working
2) Minor correction in the evaluation metrics formulas in docs.
## How was this patch tested?
NA
Closes#23589 from shahidki31/docCorrection.
Authored-by: Shahid <shahidki31@gmail.com>
Signed-off-by: Sean Owen <sean.owen@databricks.com>
## What changes were proposed in this pull request?
This PR proposes to extend the spark-submit option --num-executors to be applicable to Spark on K8S too. It is motivated by convenience, for example when migrating jobs written for YARN to run on K8S.
## How was this patch tested?
Manually tested on a K8S cluster.
Author: Luca Canali <luca.canali@cern.ch>
Closes#23573 from LucaCanali/addNumExecutorsToK8s.
